Citrus Sinensis ID: 000286
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1720 | 2.2.26 [Sep-21-2011] | |||||||
| Q6WWW4 | 1888 | E3 ubiquitin-protein liga | yes | no | 0.986 | 0.898 | 0.769 | 0.0 | |
| Q9LYZ7 | 1502 | E3 ubiquitin-protein liga | no | no | 0.358 | 0.410 | 0.455 | 1e-149 | |
| F1RCR6 | 2026 | E3 ubiquitin-protein liga | yes | no | 0.363 | 0.308 | 0.384 | 1e-122 | |
| E1B7Q7 | 1992 | E3 ubiquitin-protein liga | yes | no | 0.369 | 0.318 | 0.386 | 1e-120 | |
| Q14669 | 1992 | E3 ubiquitin-protein liga | yes | no | 0.369 | 0.318 | 0.386 | 1e-120 | |
| F1LP64 | 2025 | E3 ubiquitin-protein liga | yes | no | 0.368 | 0.313 | 0.385 | 1e-120 | |
| G5E870 | 2025 | E3 ubiquitin-protein liga | yes | no | 0.368 | 0.313 | 0.383 | 1e-119 | |
| B4F6W9 | 2056 | E3 ubiquitin-protein liga | yes | no | 0.368 | 0.308 | 0.376 | 1e-118 | |
| P33202 | 1483 | Ubiquitin fusion degradat | yes | no | 0.280 | 0.325 | 0.378 | 5e-91 | |
| Q10435 | 1647 | Probable ubiquitin fusion | yes | no | 0.264 | 0.276 | 0.380 | 2e-86 |
| >sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2531 bits (6560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1319/1714 (76%), Positives = 1477/1714 (86%), Gaps = 17/1714 (0%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
H +GR+KKILSGLRA+GEEGKQVEALTQLCEMLSIGTE+SLSTFSVDSF PVLVGLLNHE
Sbjct: 190 HLNGRMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHE 249
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+C VARLLTIEYMDLAEQSLQALKKIS
Sbjct: 250 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKIS 309
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+D+VMEAVPLLTNL
Sbjct: 310 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAVPLLTNL 369
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHD+KVLE+AS+CLTRIAEAFA P+KLDELCNHGLVTQAA+LISTSNSGGGQASLS
Sbjct: 370 LQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGQASLSV 429
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
TYTGLIRLLSTCASGSPL +TLL LGIS ILKDIL GSGVSAN++V PALSRPA+QI+
Sbjct: 430 STYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIY 489
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLP+G ISLP+S+N VKG +KS S+SGKQ+D ++S REKL
Sbjct: 490 EIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKISPREKL 545
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L DQPELLQQFG+DLLPVL+QIYGSSVN +RHKCLSVIGKLMYFSS+EMIQSL+ TNI
Sbjct: 546 LGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNI 605
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G P
Sbjct: 606 SSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGK----P 661
Query: 489 SQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVN 548
S AS DKDND +PGS+RSRRYRRRS NAN + N SEE KNP S+ +G+ +S++ PT +
Sbjct: 662 SHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSLDTPTAS 721
Query: 549 SNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSK 608
LR VS+ AKAFK+KYFPSD G +VGVTD LLH+KNLC KL AG+DD + K KGKSK
Sbjct: 722 FMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSK 781
Query: 609 ASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KE 666
ASG L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSCGY KE
Sbjct: 782 ASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSCGYFSKE 841
Query: 667 RMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLS 726
++SE N+ KLRQ+ L+RFK+F+ VALP + G V PMTVL+QKLQNALSSLERFPVVLS
Sbjct: 842 KISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLS 901
Query: 727 HSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLW 786
H +RS +GSARLSSGLSAL+ P KLRLCRA G+K+LRDYSSN+VLIDPLASLAAVEEFLW
Sbjct: 902 HPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEFLW 961
Query: 787 PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
PRVQR+ES KP+A +GN+E GT P+GAG SSPS+STPAS+ RHSSRSR ++NIGD K
Sbjct: 962 PRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSK 1021
Query: 847 KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
K+P EKGTSSSKGKGK V+K AQ + +GPQTR+ A++RA LDKD QMK A+GDSSSEDE
Sbjct: 1022 KDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGDSSSEDE 1080
Query: 907 ELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTV 966
EL+ISPV+IDDALVIE +D D++DD + + DDSLP+C DKVHDVKL DS +D
Sbjct: 1081 ELEISPVDIDDALVIE-EDDISDDEDDDNEDVLDDSLPMCTPDKVHDVKLADSVDDDGL- 1138
Query: 967 PSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVR 1026
+ S Q NPASG +S A R SDS D GNSYGSRGA+SFAAAAMAGLG+A+GRG+R
Sbjct: 1139 -ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIR 1197
Query: 1027 GGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFIS 1086
G RD HGR L SS+EP KLIFT GKQL+RHLTIYQA+QRQL+LDED+D+RFGGSD +S
Sbjct: 1198 GSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVS 1257
Query: 1087 SDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDS 1146
SDGSR +NDIYTI YQR DSQ +R+S G +SS TPSKS+KS + ++S + R SLLDS
Sbjct: 1258 SDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDS 1316
Query: 1147 ILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTG 1206
ILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD+LS T
Sbjct: 1317 ILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLDDLSTTA 1376
Query: 1207 VRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTA 1266
+VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQYFYSTA
Sbjct: 1377 AKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTA 1436
Query: 1267 FGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKA 1326
FGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQKA
Sbjct: 1437 FGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKA 1496
Query: 1327 VLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTS 1386
VLEVEYFGEVGTGLGPTLEFYTLLS DLQ+ L MWRS SS + SM+I DE + GK S
Sbjct: 1497 VLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEIEDGKPS 1555
Query: 1387 NISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFST 1446
+ D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P ST
Sbjct: 1556 AANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLST 1615
Query: 1447 AFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAP 1506
AFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE + DN + DL RG
Sbjct: 1616 AFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCR 1675
Query: 1507 IEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQV 1566
IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQV
Sbjct: 1676 IEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQV 1735
Query: 1567 FDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1626
FDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGY AKSPAI+NLLEIMGE T D
Sbjct: 1736 FDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTAD 1795
Query: 1627 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMT 1686
QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMT
Sbjct: 1796 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMT 1854
Query: 1687 CANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
CANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1855 CANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
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Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1 | Back alignment and function description |
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Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 310/680 (45%), Positives = 406/680 (59%), Gaps = 64/680 (9%)
Query: 1044 PKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQR 1103
P+L+F + G +L+R LT+YQAI + E E +++ S+L + + ITY+R
Sbjct: 884 PRLLFRLEGLELDRSLTVYQAILLHKLKSESE----------ATNDSKL-SGPHNITYER 932
Query: 1104 ADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLE-KSNPT 1162
SA S ++ S D R L + L L+ S+P
Sbjct: 933 --------------SAQLGDSRENLFPPGSMEDDEYR-PFLSYLFTHRLALRLKGSSHPP 977
Query: 1163 YTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPK 1222
Y IL LL+ LEG+N+ L + +++ EG++ +LD+L VP+ EF++SKLT K
Sbjct: 978 YDILFLLKSLEGMNRFLFHLISLERINAFGEGRLENLDDLRVQVRPVPHSEFVSSKLTEK 1037
Query: 1223 LARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGA 1282
L +Q++D+ A+ + LP W L +CP LF FE + +YF AFG + + Q +
Sbjct: 1038 LEQQLRDSFAVSTCGLPPWFNDLMDSCPCLFSFEAKSKYFRLAAFGSQKIRHHPQHLSSS 1097
Query: 1283 DGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGP 1342
+ HG E G L R+K R IL+SAAK+ME+Y +QK V+EVEY EVGTGLGP
Sbjct: 1098 NVHG---EARPVTGSLPRKKFLACRENILESAAKMMELYGNQKVVIEVEYSEEVGTGLGP 1154
Query: 1343 TLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPR 1402
TLEFYTL+SR Q L MWR++ S GK SG L + GLFPR
Sbjct: 1155 TLEFYTLVSRAFQNPDLGMWRNDCS------------FIVGKPVEHSGVLASSS-GLFPR 1201
Query: 1403 PWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDI 1462
PW ++ S+ V++ F LLG V+AKALQDGR+LDLP S AFYKL+LG EL DI
Sbjct: 1202 PWSGTSTTSD------VLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDI 1255
Query: 1463 IPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDY 1522
D E K L EL +V RK+ D+ DL F G IEDLCL+F LPGY DY
Sbjct: 1256 HFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDY 1315
Query: 1523 ILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHEL 1580
L P N V+++NLEEYI +V+ATV GI +Q+EAFR+GFNQVF I L+IF EL
Sbjct: 1316 DLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEEL 1375
Query: 1581 DHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPR 1640
+ +LCG +L+ + +HIKFDHGYT+ SP + LL+I+ EF +QQRAF QFVTG+PR
Sbjct: 1376 ETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPR 1435
Query: 1641 LPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKE 1700
LP GGLA L+PKLTIVRKH S+S+D DLPSVMTCANYLKLPPYS+KE
Sbjct: 1436 LPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKE 1482
Query: 1701 IMYKKLVYAISEGQGSFDLS 1720
M +KL+YAI+EGQGSF LS
Sbjct: 1483 KMKEKLIYAITEGQGSFHLS 1502
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Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/700 (38%), Positives = 384/700 (54%), Gaps = 74/700 (10%)
Query: 1045 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDG-SRLWNDIYTITYQ- 1102
+L F +G L ++T+YQA+ RQ L + E+ER D + G + +W +T+ Y+
Sbjct: 1377 RLQFYIGEHLLPYNMTVYQAV-RQFSL-QAEEERESTDDEANPLGRAGIWTKTHTVWYKP 1434
Query: 1103 -RADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSI---LQGELPCD--- 1155
R D + + + G + +K+ + D + S+ L+ L CD
Sbjct: 1435 VREDEEGCKDAVGGKRGRAQTAPTKTSPRNAKKQDELWHEGVCPSVANPLETYLICDPPE 1494
Query: 1156 -LEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEF 1214
+ +P+ ++ LLRVL +++ L C +P EF
Sbjct: 1495 GITFDDPSMEVILLLRVLHSISRYWFYLYDNAACKEI-----------------IPTGEF 1537
Query: 1215 INSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALY 1274
INSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF RA+
Sbjct: 1538 INSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQ 1597
Query: 1275 RLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1330
RL D + +N+ ++ RV RL+R+K ++R+ +L A VM+ S +A+LE+
Sbjct: 1598 RL-----LDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRAMLEI 1652
Query: 1331 EYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSGKTSNIS 1389
+Y EVGTGLGPT EFY L+S++LQR L +WR + NP +G +
Sbjct: 1653 QYENEVGTGLGPTQEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGTK---------- 1702
Query: 1390 GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFY 1449
+ + GLF P+ ++ +K+ FR LG++MAKA+ D RLLDLP FY
Sbjct: 1703 --YMFSSRGLFAVPF---GRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFY 1757
Query: 1450 KLVLGHE--LDLHDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVVD-LRFR 1503
K +L HE + HD++ D K +Q L I+ +K+ +E S T + ++ ++ L
Sbjct: 1758 KWMLRHESSISSHDLVNIDPGVAKSIQHLEDIIRQKKRIEQDRSHTRETLQQALESLNMN 1817
Query: 1504 GAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRA 1561
G +EDL LDFTLPG+P+ LK G D V I+NLE+Y+ LVV T+ G++RQ E+FR
Sbjct: 1818 GCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEDYLRLVVYWTLNEGVLRQFESFRE 1877
Query: 1562 GFNQVFDITSLQIFTPHELDHLLCG-RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
GF VF + LQ F P ELD LLCG + E W+ L E + DHGYT S A+ L E++
Sbjct: 1878 GFESVFPLHHLQYFYPEELDQLLCGSKSESWDVKTLMECCRPDHGYTHDSRAVRFLFEVL 1937
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD 1680
F +QQR F QFVTG+PRLP GG LNP LTIVRK + +E+ DD
Sbjct: 1938 SSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDF 1986
Query: 1681 LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
LPSVMTC NYLKLP YS+ EIM +KL+ A EGQ SF LS
Sbjct: 1987 LPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 2026
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E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/709 (38%), Positives = 386/709 (54%), Gaps = 74/709 (10%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDG-SRLWN 1094
S N +L F +G L ++T+YQA+ RQ + + EDER D + G + +W
Sbjct: 1334 FLNSGNVRHRLQFYIGEHLLPYNMTVYQAV-RQFSI-QAEDERESTDDESNPLGRAGIWT 1391
Query: 1095 DIYTITYQ--RADSQADRMSAGVS---SSATPSKSSKSGSASN----SNSDSASRMSLLD 1145
+TI Y+ R D ++++ G + P+K+S + + ++ S + L+
Sbjct: 1392 KTHTIWYKPVREDEESNKDCVGGKRGRAQTAPTKTSPRNAKKHDELWNDGVCPSVSNPLE 1451
Query: 1146 SILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGT 1205
L P ++ +P+ ++ LLRVL +++ L +C
Sbjct: 1452 VYLIPTAPENITFEDPSLDVILLLRVLHAVSRYWYYLYDNAMCKEI-------------- 1497
Query: 1206 GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYST 1265
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY T
Sbjct: 1498 ---IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVT 1554
Query: 1266 AFGLSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMY 1321
AF RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+
Sbjct: 1555 AFDRDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDL 1609
Query: 1322 SSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEG 1380
S +A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G +
Sbjct: 1610 GSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQE 1665
Query: 1381 KSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
+ N+ G L P G +P +KV FR LG++MAKA+ D RL+
Sbjct: 1666 GTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLV 1714
Query: 1441 DLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCE 1495
DLP FYK +L E L HD+ D + + L IV +K+ LE S T ++ +
Sbjct: 1715 DLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQ 1774
Query: 1496 EVVD-LRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGI 1552
++ L G +EDL LDFTLPG+P+ LK G D V I+NLEEY+ LV+ + G+
Sbjct: 1775 YALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGV 1834
Query: 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSP 1611
RQ ++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S
Sbjct: 1835 SRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSR 1894
Query: 1612 AIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGT 1671
A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK +
Sbjct: 1895 AVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES--------- 1945
Query: 1672 GPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A EGQ SF LS
Sbjct: 1946 --TENPDDFLPSVMTCVNYLKLPDYSSLEIMREKLLMAAREGQQSFHLS 1992
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/709 (38%), Positives = 385/709 (54%), Gaps = 74/709 (10%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDG-SRLWN 1094
S N +L F +G L ++T+YQA+ RQ + + EDER D + G + +W
Sbjct: 1334 FLNSGNVRHRLQFYIGEHLLPYNMTVYQAV-RQFSI-QAEDERESTDDESNPLGRAGIWT 1391
Query: 1095 DIYTITYQ--RADSQADRMSAGVS---SSATPSKSSKSGSASNS----NSDSASRMSLLD 1145
+TI Y+ R D ++++ G + P+K+S + + + S + L+
Sbjct: 1392 KTHTIWYKPVREDEESNKDCVGGKRGRAQTAPTKTSPRNAKKHDELWHDGVCPSVSNPLE 1451
Query: 1146 SILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGT 1205
L P ++ +P+ ++ LLRVL +++ L +C
Sbjct: 1452 VYLIPTPPENITFEDPSLDVILLLRVLHAISRYWYYLYDNAMCKEI-------------- 1497
Query: 1206 GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYST 1265
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY T
Sbjct: 1498 ---IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVT 1554
Query: 1266 AFGLSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMY 1321
AF RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+
Sbjct: 1555 AFDRDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDL 1609
Query: 1322 SSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEG 1380
S +A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G +
Sbjct: 1610 GSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQE 1665
Query: 1381 KSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
+ N+ G L P G +P +KV FR LG++MAKA+ D RL+
Sbjct: 1666 GTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLV 1714
Query: 1441 DLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCE 1495
DLP FYK +L E L HD+ D + + L IV +K+ LE S T ++ +
Sbjct: 1715 DLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQ 1774
Query: 1496 EVVD-LRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGI 1552
++ L G +EDL LDFTLPG+P+ LK G D V I+NLEEY+ LV+ + G+
Sbjct: 1775 YALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGV 1834
Query: 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSP 1611
RQ ++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S
Sbjct: 1835 SRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSR 1894
Query: 1612 AIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGT 1671
A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK +
Sbjct: 1895 AVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES--------- 1945
Query: 1672 GPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A EGQ SF LS
Sbjct: 1946 --TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992
|
Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/710 (38%), Positives = 383/710 (53%), Gaps = 76/710 (10%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSR--LW 1093
S N +L F +G L ++T+YQA+++ V EDE E +D S+ R +W
Sbjct: 1367 FLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERE---STDDESNPLGRAGIW 1423
Query: 1094 NDIYTITYQ--RADSQADRMSAGVS---SSATPSKSSKSGSASNS----NSDSASRMSLL 1144
+TI Y+ R D ++ + G + P+K+S + + + S + L
Sbjct: 1424 TKTHTIWYKPVREDEESSKDCVGGKRGRAQTAPTKTSPRNAKKHDELWHDGVCPSVANPL 1483
Query: 1145 DSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204
+ L P ++ +P+ ++ LLRVL +++ L +C
Sbjct: 1484 EVYLIPTPPENITFEDPSLDVILLLRVLHAISRYWYYLYDNAMCKEI------------- 1530
Query: 1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1264
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY
Sbjct: 1531 ----IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYV 1586
Query: 1265 TAFGLSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEM 1320
TAF RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+
Sbjct: 1587 TAFDRDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQD 1641
Query: 1321 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDE 1379
S +A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G +
Sbjct: 1642 LGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQ 1697
Query: 1380 GKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRL 1439
+ N+ G L P G +P +KV FR LG++MAKA+ D RL
Sbjct: 1698 EGTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRL 1746
Query: 1440 LDLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNC 1494
+DLP FYK +L E L HD+ D + + L IV +K+ LE S T ++
Sbjct: 1747 VDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESL 1806
Query: 1495 EEVVD-LRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTG 1551
+ ++ L G +EDL LDFTLPG+P+ LK G D V I+NLEEY+ LV+ + G
Sbjct: 1807 QYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEG 1866
Query: 1552 IMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKS 1610
+ RQ ++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S
Sbjct: 1867 VCRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDS 1926
Query: 1611 PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNG 1670
A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK +
Sbjct: 1927 RAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-------- 1978
Query: 1671 TGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+E+ DD LPSVMTC NYLKLP YS+ EIM KL+ A EGQ SF LS
Sbjct: 1979 ---TENPDDFLPSVMTCVNYLKLPDYSSIEIMRDKLLIAAREGQQSFHLS 2025
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 272/710 (38%), Positives = 382/710 (53%), Gaps = 76/710 (10%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSR--LW 1093
S N +L F +G L ++T+YQA+++ V EDE E +D S+ R +W
Sbjct: 1367 FLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERE---STDDESNPLGRAGIW 1423
Query: 1094 NDIYTITYQ--RADSQA-------DRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLL 1144
+TI Y+ R D ++ R A + + T +++K + S + L
Sbjct: 1424 TKTHTIWYKPVREDEESTKDCVGGKRGRAQTAPTKTSPRNAKKHDELWHDGVCPSVANPL 1483
Query: 1145 DSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204
+ L P ++ +P+ ++ LLRVL +++ L +C
Sbjct: 1484 EVYLIPTPPENITFEDPSLDVILLLRVLHAISRYWYYLYDNAMCKEI------------- 1530
Query: 1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1264
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY
Sbjct: 1531 ----IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYV 1586
Query: 1265 TAFGLSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEM 1320
TAF RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+
Sbjct: 1587 TAFDRDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQD 1641
Query: 1321 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDE 1379
S +A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G +
Sbjct: 1642 LGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLCLWRGEEVTLSNPK----GSQ 1697
Query: 1380 GKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRL 1439
+ N+ G L P G +P +KV FR LG++MAKA+ D RL
Sbjct: 1698 EGTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRL 1746
Query: 1440 LDLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNC 1494
+DLP FYK +L E L HD+ D + + L IV +K+ LE S T ++
Sbjct: 1747 VDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESL 1806
Query: 1495 EEVVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTG 1551
+ ++ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G
Sbjct: 1807 QYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEG 1866
Query: 1552 IMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKS 1610
+ RQ ++FR GF VF + LQ F P ELD LLCG + + W+ L E + DHGYT S
Sbjct: 1867 VCRQFDSFRDGFESVFPLCHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDS 1926
Query: 1611 PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNG 1670
A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK +
Sbjct: 1927 RAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-------- 1978
Query: 1671 TGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+E+ DD LPSVMTC NYLKLP YS+ +IM KL+ A EGQ SF LS
Sbjct: 1979 ---TENPDDFLPSVMTCVNYLKLPDYSSIDIMRDKLLIAAREGQQSFHLS 2025
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/712 (37%), Positives = 380/712 (53%), Gaps = 78/712 (10%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSR--LW 1093
S N +L F +G L ++T+YQA+++ + E+E E +D S+ R +W
Sbjct: 1396 FLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSIQTEEERE---STDDESNPLGRAGIW 1452
Query: 1094 NDIYTITYQ--RADSQADRMSAG--------VSSSATPSKSSKSGSASNSNSDSASR-MS 1142
+TI Y+ R + ++ + + G + +P S K + R ++
Sbjct: 1453 TKTHTIWYKPVREEEESAKDTVGGKRGRAQTAPTKTSPRNSKKHDELWHGKDGVCPRILN 1512
Query: 1143 LLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDEL 1202
L+ L P ++ +P+ ++ LLRVL +++ L VC
Sbjct: 1513 PLEVYLISGPPENITFDDPSLDVVILLRVLHAISRYWYYLYDNAVCKEI----------- 1561
Query: 1203 SGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYF 1262
+P EF NSKLT K RQ+QD L + +G++P+W +L K+CPF FPF+TR+ F
Sbjct: 1562 ------IPTSEFNNSKLTAKANRQLQDPLVIMTGNIPTWLTELGKSCPFFFPFDTRQMLF 1615
Query: 1263 YSTAFGLSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVM 1318
Y TAF RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM
Sbjct: 1616 YVTAFDRDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREDLLKQAESVM 1670
Query: 1319 EMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDG 1377
+ S +A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP +G
Sbjct: 1671 QDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLPNPKGSQEG 1730
Query: 1378 DEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDG 1437
+ +H GLF P+ +A + +KV FR LG++MAKA+ D
Sbjct: 1731 TK------------YIHNLQGLFALPFGRTAKPA---HIAKVKMKFRFLGKLMAKAIMDF 1775
Query: 1438 RLLDLPFSTAFYKLVLGHE--LDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCE 1495
RL+D+P FYK +L E L HD++ D K + L IV +K+ LE + E
Sbjct: 1776 RLVDIPLGLPFYKWMLRQESSLATHDLVNIDPVVAKSVYHLEDIVRQKKRLEQDKAQTKE 1835
Query: 1496 EVV----DLRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVK 1549
+ L G +EDL LDFTLPG+P+ LK G D V I+NLE+Y+ LV+ +
Sbjct: 1836 SLQFALESLNMNGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEDYVRLVIYWALN 1895
Query: 1550 TGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTA 1608
G+ RQ+++FR GF VF + LQ F P ELD LLCG R + W+ L E + DHGYT
Sbjct: 1896 EGVSRQLDSFRDGFESVFPLNHLQYFYPEELDQLLCGSRADPWDVKTLMECCRPDHGYTH 1955
Query: 1609 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTAS 1668
S A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK
Sbjct: 1956 DSRAVKFLFEILSSFDKEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFEA------ 2009
Query: 1669 NGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+E+ DD LPSVMTC NYLKLP YS+ + M +KL+ A EGQ SF LS
Sbjct: 2010 -----TENPDDFLPSVMTCVNYLKLPDYSSIDNMREKLLMAAREGQQSFHLS 2056
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Xenopus tropicalis (taxid: 8364) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 200/529 (37%), Positives = 291/529 (55%), Gaps = 47/529 (8%)
Query: 1196 ISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPF 1255
++ LD L GV+ + FINSKL+ KLARQ+ + L + SG+LP W LT+ PFLFPF
Sbjct: 998 LTLLDFLHSCGVKS--DSFINSKLSAKLARQLDEPLVVASGALPDWSLFLTRRFPFLFPF 1055
Query: 1256 ETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAA 1315
+TR + T+FG R + + + +E ++GR+ R+K+R+SR I +
Sbjct: 1056 DTRMLFLQCTSFGYGRLIQLWKNKSKGSKDLRNDEALQQLGRITRRKLRISRKTIFATGL 1115
Query: 1316 KVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375
K++ Y S VLE+EY E GTGLGPTLEFY+++S+ R L MWR NS S M++
Sbjct: 1116 KILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDV 1175
Query: 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQ 1435
D + + LFP P P ++ KVIE F LG +A++L
Sbjct: 1176 DTTDD-------------YITTLLFPEPLNPFSNNE------KVIELFGYLGTFVARSLL 1216
Query: 1436 DGRLLDLPFSTAFYKLVLGHELDLHDI--IPFDAEFGKILQELHVIVCRKQHLESMTSDN 1493
D R+LD FS F++L+ H + ++ +P D E ++ EL ++ + + +
Sbjct: 1217 DNRILDFRFSKVFFELL--HRMSTPNVTTVPSDVETCLLMIEL---------VDPLLAKS 1265
Query: 1494 CEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTG 1551
+ +V + +E L L FT+PG D L PG N +N N+EEYI V+D + G
Sbjct: 1266 LKYIVANKDDNMTLESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKG 1325
Query: 1552 IMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSP 1611
I +Q++AF GF++VF + I P EL + E W A L ++ +HGYT S
Sbjct: 1326 IEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSS 1385
Query: 1612 AIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGT 1671
I + + I+ F ++R F QF+TG+P+LP GG LNPK T+V KH A +G
Sbjct: 1386 IIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL 1438
Query: 1672 GPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+AD+ LPSVMTCANYLKLP Y++K+IM +L AI EG G+F LS
Sbjct: 1439 ----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483
|
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 195/512 (38%), Positives = 275/512 (53%), Gaps = 57/512 (11%)
Query: 1213 EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRA 1272
+F N KL+ KL RQ+++ + G LPSWC LT A PFL PFETR STAFGLSR+
Sbjct: 1189 DFSNWKLSAKLNRQLEEQQLVVHGCLPSWCISLTSAYPFLVPFETRYLLLQSTAFGLSRS 1248
Query: 1273 LYRLQQQQGADGHGSVNERE--IRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1330
+ L + + S NE ++ L RQK+R+SR +I + A ++ Y++ + +LE+
Sbjct: 1249 VSFLLSR---NPELSKNESSSILQFVSLHRQKIRISRKKIFNYALHLLATYAASENILEI 1305
Query: 1331 EYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISG 1390
EY EVG+GLGPTLEFYT +S++ L +WR++ +
Sbjct: 1306 EYEDEVGSGLGPTLEFYTSVSKEFTLNSLDIWRNDQPN---------------------S 1344
Query: 1391 DLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYK 1450
V+ GLFP P P + E + I F LG+ +A+++ D R++ + F+ F+
Sbjct: 1345 KFVYQASGLFPSPIPLLGSSPEN---ERKISLFFALGQFVARSIYDSRIISIQFNPLFFA 1401
Query: 1451 LVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1510
+ L + + D L+ L ++ K N E + L EDL
Sbjct: 1402 RNIP--LTISSVAKVDKGLANSLRYLEKLIPGKN------PTNAETDIKL-------EDL 1446
Query: 1511 CLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFD 1568
LDFTLPG+P L P + + N+ +Y++ V+D TV G+ +Q+EAF+ GF+ VF
Sbjct: 1447 HLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFP 1506
Query: 1569 ITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQ 1628
TSLQ+ T HEL L E W A L + I DHGYT +SP I LL +M + +Q
Sbjct: 1507 YTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQ 1566
Query: 1629 RAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCA 1688
R F QF+TG+ +LP GG A LNP LT+VR+ + P DD LPSVMTC
Sbjct: 1567 RDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCV 1615
Query: 1689 NYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
NYLKLP YS+ E++ +L AI EGQGSF LS
Sbjct: 1616 NYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647
|
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1720 | ||||||
| 255579971 | 1899 | hect ubiquitin-protein ligase, putative | 0.991 | 0.898 | 0.854 | 0.0 | |
| 225428013 | 1896 | PREDICTED: E3 ubiquitin-protein ligase U | 0.992 | 0.900 | 0.845 | 0.0 | |
| 225428015 | 1814 | PREDICTED: E3 ubiquitin-protein ligase U | 0.980 | 0.929 | 0.835 | 0.0 | |
| 356507840 | 1891 | PREDICTED: E3 ubiquitin-protein ligase U | 0.998 | 0.907 | 0.814 | 0.0 | |
| 356544882 | 1877 | PREDICTED: E3 ubiquitin-protein ligase U | 0.985 | 0.903 | 0.821 | 0.0 | |
| 356538640 | 1872 | PREDICTED: E3 ubiquitin-protein ligase U | 0.984 | 0.904 | 0.815 | 0.0 | |
| 356516547 | 1895 | PREDICTED: E3 ubiquitin-protein ligase U | 0.998 | 0.906 | 0.798 | 0.0 | |
| 449458610 | 1892 | PREDICTED: E3 ubiquitin-protein ligase U | 0.993 | 0.902 | 0.786 | 0.0 | |
| 357473823 | 1881 | E3 ubiquitin-protein ligase UPL3 [Medica | 0.990 | 0.905 | 0.793 | 0.0 | |
| 297801930 | 1884 | hypothetical protein ARALYDRAFT_912310 [ | 0.986 | 0.900 | 0.775 | 0.0 |
| >gi|255579971|ref|XP_002530820.1| hect ubiquitin-protein ligase, putative [Ricinus communis] gi|223529612|gb|EEF31560.1| hect ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2815 bits (7297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1470/1721 (85%), Positives = 1577/1721 (91%), Gaps = 15/1721 (0%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 185 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 244
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARA+THLCDVLPSSCAAVVHYGAV+CFVARLLTIEYMDLAEQSLQALKKIS
Sbjct: 245 SNPDIMLLAARAITHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQALKKIS 304
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 305 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 364
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHDAKVLEHASVCLTRIAEAFAS+P+KLDELCNHGLVTQAA+LISTSN+GGGQASLS
Sbjct: 365 LQYHDAKVLEHASVCLTRIAEAFASAPEKLDELCNHGLVTQAASLISTSNAGGGQASLSP 424
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
PTYTGLIRLLST ASGSPL AKTLL L ISGILKDILSGSGVSANS+VPPALSRPAEQIF
Sbjct: 425 PTYTGLIRLLSTFASGSPLGAKTLLLLEISGILKDILSGSGVSANSSVPPALSRPAEQIF 484
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLPQGTISLP+SSN+FVKGPVV+KSP+SSSGKQDD NGN EVSAREKL
Sbjct: 485 EIVNLANELLPPLPQGTISLPASSNVFVKGPVVKKSPSSSSGKQDDLNGNVPEVSAREKL 544
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L DQPELLQQFGMDLLPVL+QIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLS+TNI
Sbjct: 545 LKDQPELLQQFGMDLLPVLLQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSITNI 604
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDPHVL+P+LQIAEILMEKLPGTFSKMFVREGVVHA+DQL+LAGN +T P
Sbjct: 605 SSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDQLVLAGNPSTTP 664
Query: 489 SQASSADKDNDSIPGS-SRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTV 547
+QA S +KDND + G+ SRSRRY+RRSGN+N E + EES++P+ NVGSPPSSVEIPTV
Sbjct: 665 TQAPSTEKDNDYVSGTSSRSRRYKRRSGNSNAEGSLLEESRSPIPTNVGSPPSSVEIPTV 724
Query: 548 NSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKS 607
NS+LR AVS AK+FK+KYFPSDPGA+EVGVTD LLH+KNLCMKLN GVDDQ+TKAKGKS
Sbjct: 725 NSSLRMAVSTCAKSFKDKYFPSDPGASEVGVTDDLLHLKNLCMKLNVGVDDQKTKAKGKS 784
Query: 608 KASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--K 665
KAS SR D S KEEYLIGVIS+MLAEL GDGVSTFEFIGSGVVAALLNYFSCGY K
Sbjct: 785 KASESRGIDGSINKEEYLIGVISDMLAELRKGDGVSTFEFIGSGVVAALLNYFSCGYFSK 844
Query: 666 ERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL 725
ER+SEAN+ KLRQQAL+RFK F+A++LP S +AG APM VLVQKLQNALSSLERFPVVL
Sbjct: 845 ERISEANLSKLRQQALRRFKLFVALSLPYSTNAGSAAPMAVLVQKLQNALSSLERFPVVL 904
Query: 726 SHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFL 785
SHS+RSS GSARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVLIDPLASLAAVEEFL
Sbjct: 905 SHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEEFL 964
Query: 786 WPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGM 845
WPRVQR ESGQKPSASVGNSESGT P GAGA SPS STP+++ RHSSRSR SVNI D
Sbjct: 965 WPRVQRGESGQKPSASVGNSESGTTPAGAGALSPSASTPSTTR-RHSSRSRSSVNI-DAA 1022
Query: 846 KKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSED 905
+KEP QEK TSSSKGKGKAV K AQEE +GPQTRN ARRRAALDKDAQMK NGDSSSED
Sbjct: 1023 RKEPLQEKSTSSSKGKGKAVFKPAQEEAKGPQTRNVARRRAALDKDAQMKSVNGDSSSED 1082
Query: 906 EELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTT 965
EELDISPVEIDDALVIEDDDISDDEDDDHED+L+DD LP+C+ +KVHDVKLGD+ EDS+
Sbjct: 1083 EELDISPVEIDDALVIEDDDISDDEDDDHEDMLRDDPLPVCMPEKVHDVKLGDAPEDSSG 1142
Query: 966 VPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGV 1025
P+ SDSQ NPASGSSSR AT RGS+S DFRGG+SYGSRGAMSFAAAAMAGL +ANGRG+
Sbjct: 1143 APATSDSQTNPASGSSSRAATVRGSESTDFRGGSSYGSRGAMSFAAAAMAGLATANGRGI 1202
Query: 1026 RGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFI 1085
RGGRDR GRPL G S++PPKLIFT GGKQLNRHLTIYQAIQRQLVLDED+D+R+ GSDFI
Sbjct: 1203 RGGRDRQGRPLLGGSSDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDDRYAGSDFI 1262
Query: 1086 SSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSA-SRMSLL 1144
SSDGSRLW+DIYTITYQRAD Q DR+S G SSS T KS+K+GS SNSD +MSLL
Sbjct: 1263 SSDGSRLWSDIYTITYQRADGQPDRVSVGGSSSTT-LKSTKTGS---SNSDGQLHQMSLL 1318
Query: 1145 DSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204
DSILQGELPCDLEKSNPTY ILALLRVL+GLNQLAPRLRAQ D++AEG+IS+LD+LS
Sbjct: 1319 DSILQGELPCDLEKSNPTYNILALLRVLDGLNQLAPRLRAQLFSDNFAEGQISNLDDLSA 1378
Query: 1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1264
T RVP EEF+NSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS
Sbjct: 1379 TSSRVPAEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1438
Query: 1265 TAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
TAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVMEMYSSQ
Sbjct: 1439 TAFGLSRALYRLQQQQGADGHGSANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQ 1498
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGK 1384
KAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+V L MWRSNSSS+ PSMEID D K+GK
Sbjct: 1499 KAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLGMWRSNSSSDKPSMEIDEDGNKNGK 1558
Query: 1385 TSNIS----GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
+N S D+V APLGLFPRPWPPSADASEG QF K +EYFRL+GRVMAKALQDGRLL
Sbjct: 1559 VNNCSDAMGADVVQAPLGLFPRPWPPSADASEGSQFYKAVEYFRLVGRVMAKALQDGRLL 1618
Query: 1441 DLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDL 1500
DLP STAFYKLVL ELDL+DI+ FDAEFGK+LQELH +VCRK+ LES +DN + + DL
Sbjct: 1619 DLPLSTAFYKLVLNQELDLYDILSFDAEFGKVLQELHALVCRKRFLESSGTDNLDAISDL 1678
Query: 1501 RFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFR 1560
RFRG IEDLCLDFTLPGYPDYILKPGDE VD NNL+EYISLVVDATVK+GIMRQMEAFR
Sbjct: 1679 RFRGTLIEDLCLDFTLPGYPDYILKPGDETVDRNNLDEYISLVVDATVKSGIMRQMEAFR 1738
Query: 1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
AGFNQVFDI+SLQIF+P ELD+LLCGRRELWEP L +HIKFDHGYTAKSPAI+NLLEIM
Sbjct: 1739 AGFNQVFDISSLQIFSPQELDYLLCGRRELWEPETLVDHIKFDHGYTAKSPAIINLLEIM 1798
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN-TASNGTGPSESADD 1679
GEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSS+A N A+NGTGPSESADD
Sbjct: 1799 GEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAAATNGTGPSESADD 1858
Query: 1680 DLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1859 DLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1899
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428013|ref|XP_002278408.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2785 bits (7220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1456/1722 (84%), Positives = 1571/1722 (91%), Gaps = 15/1722 (0%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
HQSGRLKKILSGLRADGEEG+QVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 180 HQSGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 239
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+CF ARLLTIEYMDLAEQSLQALKKIS
Sbjct: 240 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKIS 299
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 300 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 359
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLV QAA+LISTSNSGGGQASLST
Sbjct: 360 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVDQAASLISTSNSGGGQASLST 419
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
PTYTGLIRLLSTCASGSPL AKTLL LGISGILKDILSGSG+ A+ +V PA+SRP EQIF
Sbjct: 420 PTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGLVASISVSPAISRPPEQIF 479
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLP+G ISLP+SSN+ VKG +V+K+P+SSSGKQ+D NGN EVSAREKL
Sbjct: 480 EIVNLANELLPPLPEGIISLPASSNLLVKGTLVKKAPSSSSGKQEDVNGNVPEVSAREKL 539
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L+DQPELLQQFGMDLLPVLIQIYGSSVN PVRHKCLSVIGKLMYFS+A+MIQSL+SVTNI
Sbjct: 540 LNDQPELLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTADMIQSLISVTNI 599
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDP VL+P+LQIAEILMEKLPGTFSKMFVREGVVHA+D LILAG+ N V
Sbjct: 600 SSFLAGVLAWKDPQVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDTLILAGSQNAVS 659
Query: 489 SQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVN 548
Q SS +KDNDSI G+SRSRRYR+R GN NP+ NS EE K VSV +GSPPSSVEIPT N
Sbjct: 660 VQPSSNEKDNDSITGTSRSRRYRKRGGNPNPDANSLEEPKTSVSVTIGSPPSSVEIPTSN 719
Query: 549 SNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSK 608
SNLR+ VSA AKAFK+KYFPSDPG AE GVTD LLH+KNLCM+L++G+DD +TKAKGKSK
Sbjct: 720 SNLRTTVSACAKAFKDKYFPSDPGCAEAGVTDDLLHLKNLCMRLSSGIDDHKTKAKGKSK 779
Query: 609 ASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KE 666
ASG RL D S KEE L V+SEMLAELS GDGVSTFEFIGSGVVAALLNYFSCG+ KE
Sbjct: 780 ASGHRLIDTSTNKEENLTAVLSEMLAELSKGDGVSTFEFIGSGVVAALLNYFSCGHFSKE 839
Query: 667 RMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLS 726
R+SEAN+ K R QALKRFKSF+A+ALP+++D + APMTVLVQKLQNALSSLERFPVVLS
Sbjct: 840 RISEANLSKFRTQALKRFKSFVAIALPSNIDGRNAAPMTVLVQKLQNALSSLERFPVVLS 899
Query: 727 HSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLW 786
HS+RSS+G+ARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVLIDPLASLAAVE+FLW
Sbjct: 900 HSSRSSSGNARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEDFLW 959
Query: 787 PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
PRVQR ++GQKPSAS GNSESGT PTGAGASSPSTSTPAS+A RHS+RSR SVNI D +
Sbjct: 960 PRVQRGDTGQKPSASAGNSESGTTPTGAGASSPSTSTPASTARRHSTRSRTSVNIADTAR 1019
Query: 847 KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
KEP EK SSSKGKGKAVLK AQE+ RGPQTRNAARRRA+LDKDAQ+K GDSSSEDE
Sbjct: 1020 KEPPLEKTPSSSKGKGKAVLKPAQEDARGPQTRNAARRRASLDKDAQLKPV-GDSSSEDE 1078
Query: 907 ELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTV 966
ELDISPVEIDDALVIEDDDISDDEDDDH+DVL+DDSLP+C+ DKVHDVKLGDSAEDS
Sbjct: 1079 ELDISPVEIDDALVIEDDDISDDEDDDHDDVLRDDSLPVCMPDKVHDVKLGDSAEDSNNA 1138
Query: 967 PSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVR 1026
P+ SDSQ N ASGSSSR A +G DS +FR GNS+GSRGAMSFAAAAMAGL SANGRG+R
Sbjct: 1139 PATSDSQTNAASGSSSRAAAVKGLDSTEFRSGNSFGSRGAMSFAAAAMAGLASANGRGIR 1198
Query: 1027 GGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFIS 1086
GGRDRHGRPLFGSS +PP+LIF+ GGKQLNRHLTIYQAIQRQLVLDED+DER+ GSDFIS
Sbjct: 1199 GGRDRHGRPLFGSS-DPPRLIFSAGGKQLNRHLTIYQAIQRQLVLDEDDDERYNGSDFIS 1257
Query: 1087 SDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSD-SASRMSLLD 1145
SDGSRLW+DIYTITYQRAD+QADR G SSSAT S+S+++GS S+SN+D S RMSLLD
Sbjct: 1258 SDGSRLWSDIYTITYQRADAQADRALVGGSSSATQSRSTRAGSGSSSNTDMSLHRMSLLD 1317
Query: 1146 SILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGT 1205
SILQGELPCDLEKSNPTY I+ALLRVLEGLNQLAPRLR Q V D ++EGKIS LDELS T
Sbjct: 1318 SILQGELPCDLEKSNPTYNIMALLRVLEGLNQLAPRLRVQAVSDDFSEGKISCLDELSAT 1377
Query: 1206 GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYST 1265
G RVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQ+TKACPFLFPFETRRQYFYST
Sbjct: 1378 GARVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQVTKACPFLFPFETRRQYFYST 1437
Query: 1266 AFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQK 1325
AFGLSRALYRLQQQQGADGHGS NE R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQK
Sbjct: 1438 AFGLSRALYRLQQQQGADGHGSTNE---RIGRLQRQKVRVSRNRILDSAAKVMEMYSSQK 1494
Query: 1326 AVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385
AVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+VGL MWRSN S + SMEIDGDE K+GKT
Sbjct: 1495 AVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWRSNFSPDKQSMEIDGDELKNGKT 1554
Query: 1386 SNIS------GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRL 1439
NIS D+V APLGLFPRPWPP+ADAS+G QFSKVIE+FRL+GRV+AKALQDGRL
Sbjct: 1555 DNISRLSPAASDIVQAPLGLFPRPWPPNADASDGSQFSKVIEHFRLVGRVIAKALQDGRL 1614
Query: 1440 LDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVD 1499
LDLP STA YKLVLG ELDLHDI+ FDA+FGKILQEL V+V RKQ+LES DN + + +
Sbjct: 1615 LDLPLSTALYKLVLGQELDLHDILSFDADFGKILQELQVLVSRKQYLESTGGDNQDAIAN 1674
Query: 1500 LRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAF 1559
L FRGAPIEDLCLDFTLPGYPDYILKPG+ENVDINNLEEYISLVVDATVKTGIMRQMEAF
Sbjct: 1675 LCFRGAPIEDLCLDFTLPGYPDYILKPGEENVDINNLEEYISLVVDATVKTGIMRQMEAF 1734
Query: 1560 RAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEI 1619
R+GFNQVFDITSLQIF+P ELD+LLCGRRELWE L +HIKFDHGYTAKSPAI+NLLEI
Sbjct: 1735 RSGFNQVFDITSLQIFSPDELDYLLCGRRELWEAETLVDHIKFDHGYTAKSPAIINLLEI 1794
Query: 1620 MGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNG-TGPSESAD 1678
MGEF P+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSS+ +TA+NG +GPSESAD
Sbjct: 1795 MGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTVSTAANGSSGPSESAD 1854
Query: 1679 DDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DDLPSVMTCANYLKLPPYSTKEIMYKKL+YAISEGQGSFDLS
Sbjct: 1855 DDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1896
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428015|ref|XP_002278452.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2739 bits (7100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1439/1722 (83%), Positives = 1552/1722 (90%), Gaps = 36/1722 (2%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
HQSGRLKKILSGLRADGEEG+QVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 119 HQSGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 178
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+CF ARLLTIEYMDLAEQSLQALKKIS
Sbjct: 179 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKIS 238
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 239 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 298
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLV QAA+LISTSNSGGGQASLST
Sbjct: 299 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVDQAASLISTSNSGGGQASLST 358
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
PTYTGLIRLLSTCASGSPL AKTLL LGISGILKDILSGSG+ A+ +V PA+SRP EQIF
Sbjct: 359 PTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGLVASISVSPAISRPPEQIF 418
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLP+G ISLP+SSN+ VKG +V+K+P+SSSGKQ+D NGN EVSAREKL
Sbjct: 419 EIVNLANELLPPLPEGIISLPASSNLLVKGTLVKKAPSSSSGKQEDVNGNVPEVSAREKL 478
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L+DQPELLQQFGMDLLPVLIQIYGSSVN PVRHKCLSVIGKLMYFS+A+MIQSL+SVTNI
Sbjct: 479 LNDQPELLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTADMIQSLISVTNI 538
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDP VL+P+LQIAEILMEKLPGTFSKMFVREGVVHA+D LILAG+ N V
Sbjct: 539 SSFLAGVLAWKDPQVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDTLILAGSQNAVS 598
Query: 489 SQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVN 548
Q SS +KDNDSI G+SRSRRYR+R GN NP+ NS EE K VSV +GSPPSSVEIPT N
Sbjct: 599 VQPSSNEKDNDSITGTSRSRRYRKRGGNPNPDANSLEEPKTSVSVTIGSPPSSVEIPTSN 658
Query: 549 SNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSK 608
SNLR+ VSA AKAFK+KYFPSDPG AE GVTD LLH+KNLCM+L++G+DD +TKAKGKSK
Sbjct: 659 SNLRTTVSACAKAFKDKYFPSDPGCAEAGVTDDLLHLKNLCMRLSSGIDDHKTKAKGKSK 718
Query: 609 ASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KE 666
ASG RL D S KEE L V+SEMLAELS GDGVSTFEFIGSGVVAALLNYFSCG+ KE
Sbjct: 719 ASGHRLIDTSTNKEENLTAVLSEMLAELSKGDGVSTFEFIGSGVVAALLNYFSCGHFSKE 778
Query: 667 RMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLS 726
R+SEAN+ K R QALKRFKSF+A+ALP+++D + APMTVLVQKLQNALSSLERFPVVLS
Sbjct: 779 RISEANLSKFRTQALKRFKSFVAIALPSNIDGRNAAPMTVLVQKLQNALSSLERFPVVLS 838
Query: 727 HSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLW 786
HS+RSS+G+ARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVLIDPLASLAAVE+FLW
Sbjct: 839 HSSRSSSGNARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEDFLW 898
Query: 787 PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
PRVQR ++GQKPSAS GNSESGT PTGAGASSPSTSTPAS+A RHS+RSR SVNI D +
Sbjct: 899 PRVQRGDTGQKPSASAGNSESGTTPTGAGASSPSTSTPASTARRHSTRSRTSVNIADTAR 958
Query: 847 KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
KEP EK SSSKGKGKAVLK AQE+ RGPQTRNAARRR DE
Sbjct: 959 KEPPLEKTPSSSKGKGKAVLKPAQEDARGPQTRNAARRR-------------------DE 999
Query: 907 ELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTV 966
ELDISPVEIDDALVIEDDDISDDEDDDH+DVL+DDSLP+C+ DKVHDVKLGDSAEDS
Sbjct: 1000 ELDISPVEIDDALVIEDDDISDDEDDDHDDVLRDDSLPVCMPDKVHDVKLGDSAEDSNNA 1059
Query: 967 PSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVR 1026
P+ SDSQ N ASGSSSR A +G DS +FR GNS+GSRGAMSFAAAAMAGL SANGRG+R
Sbjct: 1060 PATSDSQTNAASGSSSRAAAVKGLDSTEFRSGNSFGSRGAMSFAAAAMAGLASANGRGIR 1119
Query: 1027 GGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFIS 1086
GGRDRHGRPLFGSS +PP+LIF+ GGKQLNRHLTIYQAIQRQLVLDED+DER+ GSDFIS
Sbjct: 1120 GGRDRHGRPLFGSS-DPPRLIFSAGGKQLNRHLTIYQAIQRQLVLDEDDDERYNGSDFIS 1178
Query: 1087 SDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSD-SASRMSLLD 1145
SDGSRLW+DIYTITYQRAD+QADR G SSSAT S+S+++GS S+SN+D S RMSLLD
Sbjct: 1179 SDGSRLWSDIYTITYQRADAQADRALVGGSSSATQSRSTRAGSGSSSNTDMSLHRMSLLD 1238
Query: 1146 SILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGT 1205
SILQGELPCDLEKSNPTY I+ALLRVLEGLNQLAPRLR Q V D ++EGKIS LDELS T
Sbjct: 1239 SILQGELPCDLEKSNPTYNIMALLRVLEGLNQLAPRLRVQAVSDDFSEGKISCLDELSAT 1298
Query: 1206 GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYST 1265
G RVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQ+TKACPFLFPFETRRQYFYST
Sbjct: 1299 GARVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQVTKACPFLFPFETRRQYFYST 1358
Query: 1266 AFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQK 1325
AFGLSRALYRLQQQQGADGHGS NE R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQK
Sbjct: 1359 AFGLSRALYRLQQQQGADGHGSTNE---RIGRLQRQKVRVSRNRILDSAAKVMEMYSSQK 1415
Query: 1326 AVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385
AVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+VGL MWRSN S + SMEIDGDE K+GKT
Sbjct: 1416 AVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWRSNFSPDKQSMEIDGDELKNGKT 1475
Query: 1386 SNIS------GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRL 1439
NIS D+V APLGLFPRPWPP+ADAS+G QFSKVIE+FRL+GRV+AKALQDGRL
Sbjct: 1476 DNISRLSPAASDIVQAPLGLFPRPWPPNADASDGSQFSKVIEHFRLVGRVIAKALQDGRL 1535
Query: 1440 LDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVD 1499
LDLP STA YKLVLG ELDLHDI+ FDA+FGKILQEL V+V RKQ+LES DN + + +
Sbjct: 1536 LDLPLSTALYKLVLGQELDLHDILSFDADFGKILQELQVLVSRKQYLESTGGDNQDAIAN 1595
Query: 1500 LRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAF 1559
L FRGAPIEDLCLDFTLPGYPDYILKPG+ENVDINNLEEYISLVVDATVKTGIMRQMEAF
Sbjct: 1596 LCFRGAPIEDLCLDFTLPGYPDYILKPGEENVDINNLEEYISLVVDATVKTGIMRQMEAF 1655
Query: 1560 RAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEI 1619
R+GFNQVFDITSLQIF+P ELD+LLCGRRELWE L +HIKFDHGYTAKSPAI+N I
Sbjct: 1656 RSGFNQVFDITSLQIFSPDELDYLLCGRRELWEAETLVDHIKFDHGYTAKSPAIIN---I 1712
Query: 1620 MGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNG-TGPSESAD 1678
MGEF P+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSS+ +TA+NG +GPSESAD
Sbjct: 1713 MGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTVSTAANGSSGPSESAD 1772
Query: 1679 DDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DDLPSVMTCANYLKLPPYSTKEIMYKKL+YAISEGQGSFDLS
Sbjct: 1773 DDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1814
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507840|ref|XP_003522671.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2706 bits (7015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1409/1730 (81%), Positives = 1537/1730 (88%), Gaps = 13/1730 (0%)
Query: 1 MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPV 60
MGGSASS HQSGRLKKILSGLRADGEEG+QVEALTQLC+MLSIGTE+SLSTFSVDSF PV
Sbjct: 165 MGGSASSPHQSGRLKKILSGLRADGEEGRQVEALTQLCDMLSIGTEDSLSTFSVDSFVPV 224
Query: 61 LVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQS 120
LVGLLNHESNPD+MLLAARALTHLCDVLPSSCAAVVHYGAV+ F ARLLTIEYMDLAEQS
Sbjct: 225 LVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQS 284
Query: 121 LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180
LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP DAADFVME
Sbjct: 285 LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVME 344
Query: 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240
AVPLLTNLLQYHD+KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA+LISTS+SG
Sbjct: 345 AVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSG 404
Query: 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPAL 300
GGQASLSTPTYTGLIRLLSTCASGSPL AKTLL LG SGILKDILSGSGVS+N++V PAL
Sbjct: 405 GGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGTSGILKDILSGSGVSSNTSVSPAL 464
Query: 301 SRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNAS 360
SRPA+QIFEIVNLANELLPPLPQGTISLP SSN+FVKG VV+KS + +SG Q+DTNGN
Sbjct: 465 SRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKGSVVKKSSSGNSGIQEDTNGNVH 524
Query: 361 EVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQ 420
E+ AREKLL+DQPELLQQFGMDLLPVL+QIYG+SVN PVRHKCLSVIGKLMYFS+AEMIQ
Sbjct: 525 EILAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQ 584
Query: 421 SLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480
SLLSVTNISSFLAGVLAWKDPHVL+P+LQI+EILMEKLPGTFSKMFVREGVVHAVDQLIL
Sbjct: 585 SLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFVREGVVHAVDQLIL 644
Query: 481 AGNTNTVPSQASSADKDND-SIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPP 539
AGN+ + +Q SSA+KDND SSRSRRYR RSGN+NP+ N S++ K+PV VNVG PP
Sbjct: 645 AGNSTNISTQTSSAEKDNDSVSGTSSRSRRYRLRSGNSNPDANPSDDLKSPVPVNVGLPP 704
Query: 540 SSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQ 599
SSVE PT NS++R++VS+ A+AFK+KYFPSDPG+ EVGV+D LLH+KNLC KL GVDDQ
Sbjct: 705 SSVETPTTNSSIRASVSSVARAFKDKYFPSDPGSVEVGVSDDLLHLKNLCTKLITGVDDQ 764
Query: 600 RTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNY 659
R+KAKGK KASG L D S+ EEYLIGVIS+ML EL GD VSTFEFIGSGVV ALLNY
Sbjct: 765 RSKAKGKVKASGFGLDDNSSNTEEYLIGVISDMLKELGKGDSVSTFEFIGSGVVEALLNY 824
Query: 660 FSCGY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSS 717
FSCGY K+R+SE N+ KLRQQAL RFKSF+AVALP S+D G VAPMTVLVQKLQNAL+S
Sbjct: 825 FSCGYFSKDRISETNLPKLRQQALSRFKSFVAVALPLSIDNGAVAPMTVLVQKLQNALAS 884
Query: 718 LERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLAS 777
LERFPV+LS+S+RSS+GSARLSSGLSALSQP KLRLCRAQG+KSLRDYSSNVVLIDPLAS
Sbjct: 885 LERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLAS 944
Query: 778 LAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRL 837
LAA+EEFLW RVQR ESGQK + NSESGT P GAG SS +S S+A RHS+R+R
Sbjct: 945 LAAIEEFLWARVQRGESGQKSTVGTENSESGTTPAGAGVSS-PSSYTPSTAHRHSTRTRS 1003
Query: 838 SVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQA 897
SVNIGD +KE SQ+KGTSSSK KGKAVLK AQEE +GPQTRN RRRAALDK AQMK A
Sbjct: 1004 SVNIGDTPRKETSQDKGTSSSKSKGKAVLKPAQEEAQGPQTRNTVRRRAALDKVAQMKPA 1063
Query: 898 NGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLG 957
NGDS+SEDEELDISPVEI +ALVIEDDDISDDED+DHEDVL+DDSLP+CL DKVHDVKLG
Sbjct: 1064 NGDSTSEDEELDISPVEIAEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLG 1123
Query: 958 DSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGL 1017
DSAE+ST P+ SDSQ N ASGSSS+ T RGSDSADFR G S SRGAMSFAAAAMAGL
Sbjct: 1124 DSAEESTVAPATSDSQTNAASGSSSKAGTARGSDSADFRSGFSSSSRGAMSFAAAAMAGL 1183
Query: 1018 GSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDE 1077
G AN RG RGGRDRHG LFGSSN+PPKLIFT GGKQLNR+L+IYQAIQRQLVLDED+DE
Sbjct: 1184 GYANSRGFRGGRDRHGCLLFGSSNDPPKLIFTTGGKQLNRNLSIYQAIQRQLVLDEDDDE 1243
Query: 1078 RFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDS 1137
RF GSD++S DGS LW DIYTITYQRA++Q D+ ++ SS+ SKS+KSGSA NS+S++
Sbjct: 1244 RFAGSDYVSGDGSSLWGDIYTITYQRAENQPDK-ASTGGSSSNTSKSAKSGSALNSSSEA 1302
Query: 1138 A-SRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKI 1196
+ S+LDSILQGELPCDLEKSNPTY ILALLRVLEG NQLAPRLR V DS+A+GKI
Sbjct: 1303 KLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGFNQLAPRLRVLMVSDSFAKGKI 1362
Query: 1197 SSLDELS-GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPF 1255
LDEL TG RV EEF++ KLTPKLARQIQDALALCSG+LP WCYQLTKACPFLFPF
Sbjct: 1363 LDLDELCVTTGARVLLEEFVSGKLTPKLARQIQDALALCSGNLPLWCYQLTKACPFLFPF 1422
Query: 1256 ETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAA 1315
ETRRQYFYSTAFGLSRALYRLQQQQGADGHGS ERE+RVGRL+RQKVRVSRNR+LDSAA
Sbjct: 1423 ETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLDSAA 1482
Query: 1316 KVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375
KVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYT+LS DLQ+VGL MWRS SS ++ MEI
Sbjct: 1483 KVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSYSSDKH-QMEI 1541
Query: 1376 DGDEGKS---GKTSNISGD--LVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVM 1430
DGDE K G N++GD LV APLGLFPRPWP ++DASE QFSKVIEYFRLLGRVM
Sbjct: 1542 DGDEKKKKSEGSGPNLAGDGELVQAPLGLFPRPWPTNSDASESSQFSKVIEYFRLLGRVM 1601
Query: 1431 AKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1490
AKALQDGRLLDLP S AFYKLVL +LDLHDI+ DAE GK LQE + +VCRK ++ES+
Sbjct: 1602 AKALQDGRLLDLPLSVAFYKLVLCQDLDLHDILFIDAELGKTLQEFNALVCRKHYIESIG 1661
Query: 1491 SDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKT 1550
+ +V+L F GAPIEDLCLDFTLPGYP+Y LKPGDE VDINNLEEYISLV+DATVKT
Sbjct: 1662 GSYTDTIVNLYFHGAPIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVIDATVKT 1721
Query: 1551 GIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS 1610
GIMRQ+EAFRAGFNQVFDI+SLQIFTP ELD+LLCGRRELWE LA+HIKFDHGY AKS
Sbjct: 1722 GIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGRRELWEAETLADHIKFDHGYNAKS 1781
Query: 1611 PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNG 1670
PAIVNLLEIMGEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK SSTA N +SNG
Sbjct: 1782 PAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNNSSNG 1841
Query: 1671 TGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
GPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAISEGQGSFDLS
Sbjct: 1842 NGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1891
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544882|ref|XP_003540876.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2675 bits (6933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1415/1723 (82%), Positives = 1530/1723 (88%), Gaps = 28/1723 (1%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
HQSGRLKKIL GLRADGEEG+QVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 172 HQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 231
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+ F ARLLTIEYMDLAEQSLQALKKIS
Sbjct: 232 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKIS 291
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 292 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 351
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHD+KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA+LIS S+SGGGQASLST
Sbjct: 352 LQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLST 411
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
PTYTGLIRLLSTCASGSPL AKTLL LGISGILKDILSGSGVS+ ++V PALSRP EQIF
Sbjct: 412 PTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSKASVSPALSRPPEQIF 471
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNL NELLPPLP GTISLP SNMF+KGP+V+KSPA SSGKQ+DTNGN E+SAREKL
Sbjct: 472 EIVNLTNELLPPLPHGTISLPIISNMFLKGPIVKKSPAGSSGKQEDTNGNVPEISAREKL 531
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L+DQPELL+QF MDLLPVLIQIYGSSVN PVRHKCLSVIGKLMYFS+AEMIQSLLSVTNI
Sbjct: 532 LNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNI 591
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDPHVL+P+L+IAEILMEKLPGTFSKMF+REGVVHAVDQLIL GN+ +
Sbjct: 592 SSFLAGVLAWKDPHVLLPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILTGNSTNIS 651
Query: 489 SQASSADKDND-SIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTV 547
+QASSA+KDND SSRSRRYRRRSGN+NP+ N ++ K PVSVNVGSPP+SV++PTV
Sbjct: 652 TQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPNSVDMPTV 711
Query: 548 NSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKS 607
NS++R +VS +AKAFK+KYFPSDPGAAEVG+TD LLH+KNLCMKLNAG D+QRT KGKS
Sbjct: 712 NSSIRLSVSTAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGADEQRTNGKGKS 771
Query: 608 KASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--K 665
K SG L EEYLIG+I++ML EL GDGVSTFEFIGSGVVAALLNYFSCGY K
Sbjct: 772 KTSGFGL-------EEYLIGIIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSK 824
Query: 666 ERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL 725
+R E ++ KLRQQAL RFK FIAVALP++ + G VAPMTVLVQKLQNALSSLERFPVVL
Sbjct: 825 DRPLETHLPKLRQQALTRFKLFIAVALPSTTEDGTVAPMTVLVQKLQNALSSLERFPVVL 884
Query: 726 SHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFL 785
SHS+RSS+GSARLSSGLSALSQPFKLRLCRAQG++SLRDYSSNVVL+DPLASLAA+EEF+
Sbjct: 885 SHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGERSLRDYSSNVVLVDPLASLAAIEEFV 944
Query: 786 WPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGM 845
WPR+QR+E GQK + GNSESGT PTGAG SSP+T RHS+RSR SVNIGD
Sbjct: 945 WPRIQRSELGQKSTVPAGNSESGTTPTGAGVSSPTTH-------RHSTRSRSSVNIGDTS 997
Query: 846 KKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSED 905
+KE SQ+K TSSSKGKGKAVLK AQEE RGPQTRNA RRR ALDKDAQ+K NGDS+SED
Sbjct: 998 RKEISQDKSTSSSKGKGKAVLKPAQEEARGPQTRNATRRREALDKDAQIKPVNGDSTSED 1057
Query: 906 EELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTT 965
E+LDISPVEID+ALVIEDDDISDDEDDDH+DVL+DDSLP+C DKVHDVKLGD E+S
Sbjct: 1058 EDLDISPVEIDEALVIEDDDISDDEDDDHDDVLRDDSLPVCSPDKVHDVKLGDIVEESNV 1117
Query: 966 VPSASD-SQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRG 1024
P+ SD Q N ASGSSS+ T RGSDSADFR G + SRGAMSFAAAAMAGLGSAN RG
Sbjct: 1118 APATSDGGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRG 1177
Query: 1025 VRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGG-SD 1083
+RGGRDR GRPLFGSSN+PPKLIFT GGKQLNRHLTIYQAIQRQLVLDED++ERF G SD
Sbjct: 1178 IRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDEERFAGSSD 1237
Query: 1084 FISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNS-DSASRMS 1142
++SSDGSRLW DIYTITYQRA++Q DR G S+S SKS KSGS NS+S D ++ S
Sbjct: 1238 YVSSDGSRLWGDIYTITYQRAENQTDRTPPGGSTS-NASKSGKSGSVLNSSSEDKLNQTS 1296
Query: 1143 LLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDEL 1202
+LDSILQGELPC+LEKSNPTY ILALLRVLEGLNQLA RLRAQ V DS+AEGKI L EL
Sbjct: 1297 VLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKILDLVEL 1356
Query: 1203 SGT-GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQY 1261
S T G RVP EEFI+SKLTPKLARQIQDALALCSGSLPSWCYQL+KACPFLFPFETRRQY
Sbjct: 1357 SFTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQY 1416
Query: 1262 FYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY 1321
FYSTAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVME+Y
Sbjct: 1417 FYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELY 1476
Query: 1322 SSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGK 1381
SSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+V L MWRS SSE MEIDGDE K
Sbjct: 1477 SSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSG-SSEKYQMEIDGDE-K 1534
Query: 1382 SGKTSNIS----GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDG 1437
K S S G+LV APLGLFPRPWP +ADASEG Q KVIEYFRLLGRVMAKALQDG
Sbjct: 1535 KMKNSEGSFVGDGELVQAPLGLFPRPWPANADASEGTQIFKVIEYFRLLGRVMAKALQDG 1594
Query: 1438 RLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEV 1497
RLLDLP S AFYKLVLG ELDLHDI+ DAE GK LQEL+ +VCRK +ES+ +
Sbjct: 1595 RLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKCFIESIGGSYTDTF 1654
Query: 1498 VDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQME 1557
+L FRGAPIEDLCLDFTLPGYP+YILKPGDE VDINNLEEYIS+VV+ATVKTGIMRQME
Sbjct: 1655 ANLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGIMRQME 1714
Query: 1558 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1617
AFRAGFNQVFDI+SLQIF+P ELD+LLCGRRELW+ LA+HIKFDHGYTAKSPAIVNLL
Sbjct: 1715 AFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLL 1774
Query: 1618 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESA 1677
EIMGEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK SS+A N +SNG GPSE A
Sbjct: 1775 EIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSELA 1834
Query: 1678 DDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAISEGQGSFDLS
Sbjct: 1835 DDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1877
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538640|ref|XP_003537809.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2646 bits (6858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1404/1721 (81%), Positives = 1525/1721 (88%), Gaps = 27/1721 (1%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
HQSGRLKKIL GLRADGEEG+QVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 170 HQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 229
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+ F ARLLTIEYMDLAEQSLQALKKIS
Sbjct: 230 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKIS 289
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 290 LEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 349
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHD+KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQA +LIS S+SGGGQASLST
Sbjct: 350 LQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQATSLISNSSSGGGQASLST 409
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
PTYTGLIRLLSTCASGSPL AKTLL LGISGILKDILSGSGVS+N++V PALSRP EQIF
Sbjct: 410 PTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIF 469
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLP GTISLP SNMF+KGP+V+KSP+ SSGKQ+DTNGN E+SAREKL
Sbjct: 470 EIVNLANELLPPLPHGTISLPIISNMFLKGPIVKKSPSGSSGKQEDTNGNVPEISAREKL 529
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L+DQPELL+QF MDLLPVLIQIYGSSVN PVRHKCLSVIGKLMYFS+AEMIQSLLSVTNI
Sbjct: 530 LNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNI 589
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDPHVL+P+L+IAEILMEKLPGTFSKMF+REGVVHAVDQLILA N+ +
Sbjct: 590 SSFLAGVLAWKDPHVLLPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILASNSTNIS 649
Query: 489 SQASSADKDND-SIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTV 547
+QAS A+KDND SSRSRRYRRRSGN+NP+ N ++ K PVSVNVGSPPSSV++PT+
Sbjct: 650 TQASPAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPSSVDMPTL 709
Query: 548 NSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKS 607
NS++R +VS +AKAFK+KYFPSDPGAAEVG+TD LLH+KNLCMKLNAG D+QRT KG+S
Sbjct: 710 NSSIRLSVSTAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGDDEQRTNGKGES 769
Query: 608 KASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--K 665
K SG EEYLIG+I+ ML EL GDGVSTFEFIGSGVVAALLNYFSCGY K
Sbjct: 770 KTSG-------FGPEEYLIGIIANMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSK 822
Query: 666 ERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL 725
+R EA++ KLRQQAL RFK FIAVALP++++ G VAPMTVLVQKLQNALSSLERFPVVL
Sbjct: 823 DRPLEAHLPKLRQQALTRFKLFIAVALPSTIEVGTVAPMTVLVQKLQNALSSLERFPVVL 882
Query: 726 SHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFL 785
SHS+RSS+GSARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVL+DPLASLAA+EEF+
Sbjct: 883 SHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFV 942
Query: 786 WPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGM 845
WPR+QR+ESGQK + + GNSESGT P GAG SSP+T HS+RSR SVNIGD
Sbjct: 943 WPRIQRSESGQKSTVATGNSESGTTPAGAGVSSPTTRR-------HSTRSRSSVNIGDTS 995
Query: 846 KKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSED 905
+KE +Q+K TSSSKGKGK VLK AQEE RGPQTRNA RRRAALDKDAQMK N DS+SED
Sbjct: 996 RKEITQDKSTSSSKGKGKVVLKPAQEEARGPQTRNATRRRAALDKDAQMKPVNADSTSED 1055
Query: 906 EELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTT 965
E+LDISPVEID+ALVIEDDDISDDEDDDHEDVL+DDSLP+C DKVHDVKLGD AE+S
Sbjct: 1056 EDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDKVHDVKLGDLAEESNV 1115
Query: 966 VPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGV 1025
P+ SD Q N ASGSSS+ T RGSDS DFR G + SRGAMSFAAAAMAGLGSAN RG+
Sbjct: 1116 APATSDGQANAASGSSSKAGTVRGSDSTDFRSGYNSSSRGAMSFAAAAMAGLGSANSRGI 1175
Query: 1026 RGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGG-SDF 1084
RGGRDR GRPLFGSSN+PPKLIFT GGKQLNRHLTIYQAIQRQLVL D+DERF G SD+
Sbjct: 1176 RGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVL--DDDERFAGSSDY 1233
Query: 1085 ISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSA-SRMSL 1143
+SSDGSRLW DIYTITY RA++Q DR G S+S SKS KSGS SNS+S++ + S+
Sbjct: 1234 VSSDGSRLWGDIYTITYHRAENQTDRTPPGGSTS-NASKSCKSGSVSNSSSEAKLHQTSV 1292
Query: 1144 LDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1203
LDSILQGELPC+LEKSNPTY ILALLRVLEGLNQLA RLRAQ V DS+AEGKI LDELS
Sbjct: 1293 LDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKILDLDELS 1352
Query: 1204 GT-GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYF 1262
T G RVP EEFI+SKLTPKLARQIQDALALCSGSLPSWCYQL+KACPFLFPFETRRQYF
Sbjct: 1353 VTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYF 1412
Query: 1263 YSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS 1322
YSTAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVME+YS
Sbjct: 1413 YSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYS 1472
Query: 1323 SQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKS 1382
SQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ++ L MWRS SSE M+IDGDE K
Sbjct: 1473 SQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKIILEMWRSG-SSEKYQMKIDGDEKKM 1531
Query: 1383 GKTSNI---SGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRL 1439
++ G+LV APLGLFPRPW +ADASEG QF KVIEYFRLLGRVMAKALQDGRL
Sbjct: 1532 KRSEGSFVGDGELVQAPLGLFPRPWSANADASEGTQFFKVIEYFRLLGRVMAKALQDGRL 1591
Query: 1440 LDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVD 1499
LDLP S AFYKLVLG ELDLHDI+ DAE GK LQEL+ +VCRK +++S + +
Sbjct: 1592 LDLPMSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKHYIQSTGGSYTDTFAN 1651
Query: 1500 LRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAF 1559
L FRGAPIEDLCLDFTLPGYP+YILKPGDE VDINNLEEYIS+VV+ATVKTGIMRQMEAF
Sbjct: 1652 LHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGIMRQMEAF 1711
Query: 1560 RAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEI 1619
RAGFNQVFDI+SLQIF+P ELD+LLCGRRELW+ LA+HIKFDHGYTAKSPAIVNLL I
Sbjct: 1712 RAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLGI 1771
Query: 1620 MGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADD 1679
MGEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK SS+A N +SNG GPSE ADD
Sbjct: 1772 MGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSELADD 1831
Query: 1680 DLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DLPSVMTCANYLKLPPYSTKEIMYKKL+YAISEGQGSFDLS
Sbjct: 1832 DLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1872
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516547|ref|XP_003526955.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2635 bits (6830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1383/1733 (79%), Positives = 1515/1733 (87%), Gaps = 16/1733 (0%)
Query: 1 MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPV 60
MGGS SSHQ+G LK+ILSGLRADGEEG+QVEALT LC+MLSIGTE+SLSTFSVDSF PV
Sbjct: 166 MGGSVPSSHQTGGLKQILSGLRADGEEGRQVEALTHLCDMLSIGTEDSLSTFSVDSFVPV 225
Query: 61 LVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQS 120
LVGLLNHESNPD+MLLAARALTHLCDVLPSSCAAVVHYGAV+ F ARLLTIEYMDLAEQS
Sbjct: 226 LVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQS 285
Query: 121 LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180
LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP DAADFVME
Sbjct: 286 LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVME 345
Query: 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240
AVPLLTNLLQYHD+KVLEHASVCLTRIA+AFASSPDKLDELCNHGLVTQAA+LISTS SG
Sbjct: 346 AVPLLTNLLQYHDSKVLEHASVCLTRIAKAFASSPDKLDELCNHGLVTQAASLISTSGSG 405
Query: 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPAL 300
GGQASLSTPTYTGLIRLLSTCASGSPL AKTLL G SGILKDILSGSGVS+N++V PAL
Sbjct: 406 GGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLHGASGILKDILSGSGVSSNTSVSPAL 465
Query: 301 SRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSS-GKQDDTNGNA 359
SRPA+QIFEIVNLANELLPPLPQGTISLP SSN+FVK VV+KSP S + G Q+DTNGN
Sbjct: 466 SRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKESVVKKSPPSGNPGIQEDTNGNV 525
Query: 360 SEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419
E+SAR KLL+D+PELL+QFGMDLLPVL+QIYG+SVN PVRHKCLSVIGKLMYFS+AEMI
Sbjct: 526 HEISARAKLLNDKPELLKQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMI 585
Query: 420 QSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLI 479
QSLLSVTNISSFLAGVLAWKDPHVL+P+LQI+EILMEKLPG FSKMFVREGVVHAVDQLI
Sbjct: 586 QSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGIFSKMFVREGVVHAVDQLI 645
Query: 480 LAGNTNTVPSQASSADKDND-SIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSP 538
LAGN + +Q SSA+KD D SSRSRRYR RSGN+NP+ N S++ K+PV VNVG P
Sbjct: 646 LAGNATNISTQTSSAEKDTDSVSGTSSRSRRYRLRSGNSNPDANRSDDLKSPVPVNVGLP 705
Query: 539 PSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDD 598
PSSVE PT NS++R+++S+ A AFK+KYFPSDPG+ EVGV+D LLH+KNLC KLN GVDD
Sbjct: 706 PSSVETPTTNSSIRASISSVANAFKDKYFPSDPGSVEVGVSDDLLHLKNLCSKLNTGVDD 765
Query: 599 QRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLN 658
QR+KAKGK +ASG L D S EEYLIGVIS+ML EL GD VSTFEFIGSGVV ALLN
Sbjct: 766 QRSKAKGKVEASGFDLDDDSTNTEEYLIGVISDMLKELGKGDSVSTFEFIGSGVVEALLN 825
Query: 659 YFSCGY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALS 716
YFSCGY K+R+SE N+ KLRQQAL RFKSF+AVALP S+D G VAPMTVLVQKLQN LS
Sbjct: 826 YFSCGYFSKDRISETNLPKLRQQALTRFKSFVAVALPLSIDNGAVAPMTVLVQKLQNVLS 885
Query: 717 SLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLA 776
SLERFPV+LS+S+RSS+GS RLSSGLSALSQP KLR CRAQG+KSL+DYSS+VVLIDPLA
Sbjct: 886 SLERFPVMLSNSSRSSSGSGRLSSGLSALSQPIKLRFCRAQGEKSLKDYSSSVVLIDPLA 945
Query: 777 SLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHS--SR 834
SLAA+EEFLW RVQR ESG K + NSESGT P GAG SSPS+ P S+A R+S SR
Sbjct: 946 SLAAIEEFLWARVQRGESGLKSTVGTENSESGTTPAGAGVSSPSSYIP-STAFRYSTGSR 1004
Query: 835 SRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQM 894
SR SVNIGD +KE Q+ GTSSSK KGKAVLK AQEE RGPQTRNA RRRAALDKDAQM
Sbjct: 1005 SRSSVNIGDTPRKEIFQDNGTSSSKSKGKAVLKPAQEEARGPQTRNAVRRRAALDKDAQM 1064
Query: 895 KQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDV 954
K ANGDS+SEDEELDISPVEID+ALVIEDDDISDDED+D EDV +D LP+ L D+VHDV
Sbjct: 1065 KPANGDSTSEDEELDISPVEIDEALVIEDDDISDDEDEDREDVRRDYYLPVYLPDEVHDV 1124
Query: 955 KLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAM 1014
KLGDSAE+ST P+ SDSQ N ASGSSS+ T RG DSADFR G S SRGAMSFAAAAM
Sbjct: 1125 KLGDSAEESTVAPATSDSQTNAASGSSSKAGTARGCDSADFRSGYSSSSRGAMSFAAAAM 1184
Query: 1015 AGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDED 1074
AGLG AN RG RGGRDRHGR LFGSSN+PPKLIFT GGK LNR+LTIYQAIQRQL+LDED
Sbjct: 1185 AGLGYANSRGFRGGRDRHGRLLFGSSNDPPKLIFTAGGKHLNRNLTIYQAIQRQLMLDED 1244
Query: 1075 EDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSN 1134
+DER GSD +SSDGS LW DIYTITYQRA++Q D+ ++ SS+ SKS+KSGSA NS+
Sbjct: 1245 DDERLAGSDRVSSDGSSLWGDIYTITYQRAENQPDK-ASNGGSSSNTSKSAKSGSALNSS 1303
Query: 1135 SDSA-SRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAE 1193
S++ + S+LDSILQG+LPCDLEKSNPTY ILALLRVLEGLNQLAP LR Q V DS+A+
Sbjct: 1304 SEAKLHQTSVLDSILQGDLPCDLEKSNPTYNILALLRVLEGLNQLAPHLRTQMVSDSFAK 1363
Query: 1194 GKISSLDELS-GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFL 1252
GKI LDEL TG RV EEF++ KLTPKLARQIQDALALCSGSLP WC QLTKACPFL
Sbjct: 1364 GKILDLDELGVTTGARVLPEEFVSGKLTPKLARQIQDALALCSGSLPLWCCQLTKACPFL 1423
Query: 1253 FPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILD 1312
FPF+TRRQYFYSTAFGLSRALYRLQQQQGADGHGS ERE+RVGRL+RQKVRVSRNR+LD
Sbjct: 1424 FPFDTRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLD 1483
Query: 1313 SAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1372
SAAKVM MYSSQKAVLEVEYFGEVGTGLGPTLEFYT+LS DLQ+VGL MWRS SSE
Sbjct: 1484 SAAKVMGMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQQVGLQMWRS-YSSEKHQ 1542
Query: 1373 MEIDGDEGKS---GKTSNISGD--LVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLG 1427
MEID DE K G N++GD LV APLGLFPRPWP ++DASEG +FSKV+EYFRLLG
Sbjct: 1543 MEIDRDEKKKKSDGSGPNLAGDGELVEAPLGLFPRPWPTNSDASEGSRFSKVVEYFRLLG 1602
Query: 1428 RVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLE 1487
RVMAKALQDGRLLDLP S AFYKLVLG +LDLHDI+ DAE GK LQE + +VCRK ++E
Sbjct: 1603 RVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILSIDAELGKTLQEFNALVCRKHYIE 1662
Query: 1488 SMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDAT 1547
S+ + +V+L F G PIEDLCLDFTLPGYP+Y LKPGDE VDINNLEEYISLV DAT
Sbjct: 1663 SIGGSYTDTIVNLHFHGVPIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVADAT 1722
Query: 1548 VKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYT 1607
VKTGIMRQ+EAFRAGFNQVFDI+SLQIFTP ELD+LLCG RELWE LA+HIKFDHGY
Sbjct: 1723 VKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGCRELWESETLADHIKFDHGYN 1782
Query: 1608 AKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTA 1667
AKSPAI+NLLEIMG FTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK SSTA NT+
Sbjct: 1783 AKSPAIINLLEIMGGFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTS 1842
Query: 1668 SNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
SNG GPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EG+GSFDLS
Sbjct: 1843 SNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGRGSFDLS 1895
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458610|ref|XP_004147040.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] gi|449489652|ref|XP_004158376.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2590 bits (6714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1355/1723 (78%), Positives = 1501/1723 (87%), Gaps = 15/1723 (0%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
Q GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 174 QQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 233
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV CF ARLLTIEYMDLAEQSLQALKKIS
Sbjct: 234 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVPCFCARLLTIEYMDLAEQSLQALKKIS 293
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 294 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 353
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA+LISTS++GGGQ++L +
Sbjct: 354 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLGS 413
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
TYTGLIRLLSTCASGS L AKTLL LGISGILKDILSGSGVS N++V PAL+RP EQIF
Sbjct: 414 ATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIF 473
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLPQGTIS P + NM VKGPV++K S S K++D +A EVSAREKL
Sbjct: 474 EIVNLANELLPPLPQGTISFPPNFNMLVKGPVIKKPSTSGSVKEEDPTDSAPEVSAREKL 533
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L DQPELL QFGMDLLP+LIQIYGSSVN PVRHKCLS IGKLMYFS+ EMIQSLL+VTNI
Sbjct: 534 LKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNI 593
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
+SFLAGVLAWKDPH+LIP+LQIAEILMEKL TFSKMF+REGVV+AVDQLILA N NT
Sbjct: 594 ASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNT-S 652
Query: 489 SQASSADKDNDSIPG-SSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTV 547
SQ++S +KD+ S G SSR+RRYRRRSGN N + +S +E+KN VS G P SVE+P++
Sbjct: 653 SQSASVEKDSTSASGTSSRTRRYRRRSGNMNSDGSSLDENKNSVS-GSGVPQGSVEVPSI 711
Query: 548 NSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKS 607
NSNLRS+VS+ A AFK KYFP DPG EVGVTD LL +KNLC KLNAG+DDQ++K+KGK
Sbjct: 712 NSNLRSSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCFKLNAGIDDQKSKSKGKL 771
Query: 608 KASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--K 665
KASGSRL DI KEEYL GVISEML EL DGVSTFEFIGSGVV LLNYFSCGY K
Sbjct: 772 KASGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSK 831
Query: 666 ERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL 725
R+S+ + KLRQQ LKRFKSFI+VALP S++ G VAPMTVLVQKLQ+ALSSLERFPVVL
Sbjct: 832 GRISDVELPKLRQQVLKRFKSFISVALPGSINEGTVAPMTVLVQKLQSALSSLERFPVVL 891
Query: 726 SHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFL 785
SHS+RSS+GSARLSSGLS LSQPFKLRLCRAQG+KSLRDYSSN+VLIDPLASLAAVEEFL
Sbjct: 892 SHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFL 951
Query: 786 WPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGM 845
WPRVQ++ESGQKPSAS NS+SGT P+G A S STP+S+A R+S+RSR S+ IG+
Sbjct: 952 WPRVQKSESGQKPSASGANSDSGTTPSGNVAPSGLNSTPSSTARRYSTRSRSSMTIGERA 1011
Query: 846 KKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSED 905
KE SQEK T SKGKGKA+LK A EE RG QTR++ RRRAA+DKDAQMK NG+++SED
Sbjct: 1012 GKESSQEKNT--SKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSED 1069
Query: 906 EELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTT 965
EELD++ ++IDD+LVIEDDDISDDEDDDH+DVL+DDSLPLC+ +KVHDVKLGD+ ED
Sbjct: 1070 EELDLTSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEDGDA 1129
Query: 966 VPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGV 1025
P+ SD Q + GSSSR AT RGS S D R GNS+ SRG MSFAAAAMAGLG ANGRG
Sbjct: 1130 GPATSDGQIHSTFGSSSRAATVRGSSSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGF 1189
Query: 1026 RGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFG--GSD 1083
RGGRD GRPLFG SN+ PKL+F+ G KQL+RHLTIYQA+QRQLVL+ED+DERF GSD
Sbjct: 1190 RGGRDPQGRPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGTGSD 1249
Query: 1084 FISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSA-SRMS 1142
F+S+DGS LW DIYTITYQRAD+Q++R SS++ SKS+K S SNSNS+S +MS
Sbjct: 1250 FLSNDGSSLWGDIYTITYQRADNQSERAVLAGESSSSKSKSTKCVSTSNSNSESQFHQMS 1309
Query: 1143 LLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDEL 1202
LLDSILQG+LPCD +KSNPTY IL+LLRVLEGLNQLAPRLRAQ V D +AEGKI++LDEL
Sbjct: 1310 LLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITALDEL 1369
Query: 1203 SGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYF 1262
G G +VP+EEFIN+KLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYF
Sbjct: 1370 GGVGGKVPHEEFINNKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYF 1429
Query: 1263 YSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS 1322
YSTAFGLSRALYRL QQQGADG G+VNERE RVGRL+RQKVRVSRNRILDSAAKVMEMYS
Sbjct: 1430 YSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYS 1489
Query: 1323 SQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGD---- 1378
SQKAVLEVEYFGEVGTGLGPTLEFYTLLS +LQR GL MWRSNS E+ DG
Sbjct: 1490 SQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQARKP 1549
Query: 1379 EGKSGKTSNISG-DLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDG 1437
+G S TS+ + D++ +PLGLFPRPWP +AD+S+G QFSKVIEYFRL+GRVMAKALQDG
Sbjct: 1550 KGGSRLTSDAANIDIIQSPLGLFPRPWPANADSSDGSQFSKVIEYFRLVGRVMAKALQDG 1609
Query: 1438 RLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEV 1497
RLLDLP STAFYKLVLG +LDLHDI+ FDAE GK LQEL +VCRKQ+L S+ DN +
Sbjct: 1610 RLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLGSLNGDNQNTI 1669
Query: 1498 VDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQME 1557
+L FRG P+EDLCLDFT+PGYPDY+L+PGDE V+I+NLEEYISLV+DATVKTGIMRQME
Sbjct: 1670 SNLTFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQME 1729
Query: 1558 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1617
AF AGFNQVFDIT+L IF PHELDHLLCGRRELW+ L +HIKFDHGYTAKSPAIVN L
Sbjct: 1730 AFTAGFNQVFDITALHIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFL 1789
Query: 1618 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESA 1677
EIMGEFTP+QQRAFCQFVTGAPRLPPGGLAVLNP+LTIVRKHSSTA N A++ TG SESA
Sbjct: 1790 EIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGASESA 1849
Query: 1678 DDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1850 DDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS 1892
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473823|ref|XP_003607196.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] gi|355508251|gb|AES89393.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2583 bits (6696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1368/1725 (79%), Positives = 1504/1725 (87%), Gaps = 22/1725 (1%)
Query: 3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLV 62
G SSSHQSGRLKKIL GLRA+GEEG+QVEALTQLCE+LSIGTE+SLSTFSVDSF PVLV
Sbjct: 172 GMGSSSHQSGRLKKILFGLRAEGEEGRQVEALTQLCEILSIGTEDSLSTFSVDSFVPVLV 231
Query: 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQ 122
GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+ F ARLLTIEYMDLAEQSLQ
Sbjct: 232 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQ 291
Query: 123 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAV 182
ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+DFVMEAV
Sbjct: 292 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAV 351
Query: 183 PLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242
PLLTNLLQYHDAKVLEHASVCLTRIAEAFASS DKLDELCNHGLVTQAA+LIS S+SGGG
Sbjct: 352 PLLTNLLQYHDAKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGG 411
Query: 243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302
QASLSTPTYTGLIRLLSTCASGSPL +KTLL LGIS ILKDILSGSG S+N +V PALSR
Sbjct: 412 QASLSTPTYTGLIRLLSTCASGSPLGSKTLLLLGISRILKDILSGSGDSSNDSVSPALSR 471
Query: 303 PAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 362
P EQIFEIVNL NELLPPLPQGTISLP S+N FVKGPVV+KSPA SS +Q+DTNGN E+
Sbjct: 472 PPEQIFEIVNLTNELLPPLPQGTISLPVSTN-FVKGPVVKKSPAGSSVQQEDTNGNVPEI 530
Query: 363 SAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSL 422
SAREKLL++QPELL QFGMDLLPVLIQIYGSSVN PVRHKCLSVIGKLMYFS +EMIQSL
Sbjct: 531 SAREKLLNEQPELLGQFGMDLLPVLIQIYGSSVNIPVRHKCLSVIGKLMYFSPSEMIQSL 590
Query: 423 LSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 482
LSVTNISSFLAGVLA KD HVL P+LQIAEILMEKLP TFSKMF+REGVVHAVDQLIL G
Sbjct: 591 LSVTNISSFLAGVLASKDSHVLTPALQIAEILMEKLPETFSKMFIREGVVHAVDQLILPG 650
Query: 483 NTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSV 542
N+ V +QASSA+KD DS+PG+S R RR + ++ K+PVSVNVGSPPSS
Sbjct: 651 NSTNVSTQASSAEKDTDSMPGASSRPRRNRRRSGNSNP--DGDDLKSPVSVNVGSPPSSA 708
Query: 543 EIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTK 602
IPT S++R +VSA+AK FK++YFPS+PGA EVGVTD LLH+KNLCMKLN GVDDQRT
Sbjct: 709 NIPTAGSSIRLSVSAAAKTFKDQYFPSEPGAVEVGVTDDLLHLKNLCMKLNGGVDDQRTN 768
Query: 603 AKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSC 662
KGKSK G L EE LIGVISEML EL GDGVSTFEFIGSGVVAALLNYFSC
Sbjct: 769 GKGKSKTFGLGL-------EEGLIGVISEMLKELGKGDGVSTFEFIGSGVVAALLNYFSC 821
Query: 663 GY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLER 720
GY K+R SE ++ KLR+QAL RFK FI VALP ++D D APMTVLVQKLQNALSS+ER
Sbjct: 822 GYFSKDRPSETHLPKLRKQALTRFKLFITVALPTAIDNRDAAPMTVLVQKLQNALSSMER 881
Query: 721 FPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAA 780
FPV+LS S RSS+GSARLSSGLSALS PFKLRLCRAQG+KSL+DYS+NVVLIDPLASLAA
Sbjct: 882 FPVLLSQSPRSSSGSARLSSGLSALSHPFKLRLCRAQGEKSLKDYSNNVVLIDPLASLAA 941
Query: 781 VEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVN 840
+EEFLWPR+QR+ES QK +A GNSESGT+P GAG +++ S+ RHS+RSR S +
Sbjct: 942 IEEFLWPRIQRSESVQKSTAPAGNSESGTSPVGAGVPP-PSTSTPSTTRRHSTRSRSSAS 1000
Query: 841 IGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGD 900
+GD KKE +Q+K +SSSKGKGKAVLK AQEE RGPQTRNA+RRRAALDKD QMK ANGD
Sbjct: 1001 LGDTSKKESTQDKTSSSSKGKGKAVLKPAQEEARGPQTRNASRRRAALDKDVQMKPANGD 1060
Query: 901 SSSEDEELDISPVEIDDALVIE-DDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDS 959
S+SEDE+LDISPVEID+ALVIE DDDISDDEDDDH+D+L+DDSLP+CL +KVHDVKLGDS
Sbjct: 1061 STSEDEDLDISPVEIDEALVIEDDDDISDDEDDDHDDMLRDDSLPVCLPEKVHDVKLGDS 1120
Query: 960 AEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGS 1019
AE+ST P+ +D Q N ASGSSS+ + RGSD DFR G S SRGAMSFAAAAMAGLGS
Sbjct: 1121 AEESTATPATNDGQTNAASGSSSKVGSVRGSDPTDFRSGYSSSSRGAMSFAAAAMAGLGS 1180
Query: 1020 ANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERF 1079
AN RG+RGGRDRHGRPLFGSSN+PPKLIFT GGKQLNR LTIYQA+QRQLV D+D+DERF
Sbjct: 1181 ANSRGIRGGRDRHGRPLFGSSNDPPKLIFTAGGKQLNRQLTIYQAVQRQLVQDDDDDERF 1240
Query: 1080 GGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSAS 1139
GSDF+S+DGSR+W DI+TITYQ+AD Q DR S G +SS T S ++++S+
Sbjct: 1241 AGSDFVSNDGSRMWGDIFTITYQKADGQTDRASPGGASSNTSKSSKSGSASNSSSEVKLH 1300
Query: 1140 RMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSL 1199
+ S++DSILQGELPC+LEKSNPTY ILALLRVLEGLNQLAPRLRAQ D +AEGK+ L
Sbjct: 1301 QTSVVDSILQGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDGFAEGKLLDL 1360
Query: 1200 DEL-SGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETR 1258
DEL TG +VP EEFI+SKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFE R
Sbjct: 1361 DELVVATGSKVPPEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEIR 1420
Query: 1259 RQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVM 1318
RQYFYSTAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVM
Sbjct: 1421 RQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVM 1480
Query: 1319 EMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGD 1378
E+YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+VGL MWRS S MEIDGD
Sbjct: 1481 ELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSD----HMEIDGD 1536
Query: 1379 EGKSGKTS-NIS--GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQ 1435
E K + NI+ G+LV APLGLFPRPWP +ADASEG Q KVIEYFRLLGRV+AKALQ
Sbjct: 1537 EKKKKSSEGNIARDGELVQAPLGLFPRPWPANADASEGSQLFKVIEYFRLLGRVVAKALQ 1596
Query: 1436 DGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCE 1495
DGRLLDLP S AFYKLVLG +LDLHDI+ DAE GK LQEL+ +VCRK ++ES+ N
Sbjct: 1597 DGRLLDLPLSVAFYKLVLGQDLDLHDILYVDAELGKTLQELNALVCRKHNIESIGGGNTG 1656
Query: 1496 EVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQ 1555
V +L +RGAPI DLCLDFTLPGYP+Y LKPGDE VD+NNLE+YIS+VVDATVKTGI RQ
Sbjct: 1657 TVSNLHYRGAPIADLCLDFTLPGYPEYTLKPGDEIVDLNNLEDYISMVVDATVKTGITRQ 1716
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVN 1615
+EAFRAGFNQVFDI+SLQIFTPHELD+LLCGRRELW+ LA+HIKFDHGYTAKSPAIVN
Sbjct: 1717 LEAFRAGFNQVFDISSLQIFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVN 1776
Query: 1616 LLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE 1675
LLEIMGEFTP+QQRAFCQFVTGAP+LPPGGLAVLNPKLTIVRK SSTA NT SNG GPSE
Sbjct: 1777 LLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTTSNGNGPSE 1836
Query: 1676 SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
+ADDDLPSVMTCANYLKLPPYSTKEIM+KKL+YAI+EGQGSFDLS
Sbjct: 1837 TADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1881
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801930|ref|XP_002868849.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] gi|297314685|gb|EFH45108.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2555 bits (6621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1330/1715 (77%), Positives = 1489/1715 (86%), Gaps = 18/1715 (1%)
Query: 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
H +GR+KKILSGLR++GEEGKQVEALTQLCEMLSIGTE+SLSTFSVDSF PVLVGLLNHE
Sbjct: 185 HLNGRMKKILSGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHE 244
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+C VARLLTIEYMDLAEQSLQALKKIS
Sbjct: 245 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKIS 304
Query: 129 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+D+VMEAVPLLTNL
Sbjct: 305 QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAVPLLTNL 364
Query: 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
LQYHDAKVLE+AS+CLTRIAEAFA P+KLDELCNHGLVTQAA+LISTSNSGGGQASLS
Sbjct: 365 LQYHDAKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGQASLSV 424
Query: 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
TYTGLIRLLSTCASGSPL +TLL LGIS ILKDIL GSGVSAN++V PALSRPA+QIF
Sbjct: 425 STYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANTSVSPALSRPADQIF 484
Query: 309 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
EIVNLANELLPPLP+G ISLP+S+N FVKG +KS S+SGKQ+D A ++S REKL
Sbjct: 485 EIVNLANELLPPLPEGVISLPTSTNAFVKGSCQKKSCPSTSGKQED----ALKISPREKL 540
Query: 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
L DQPELLQQFG+DLLPVL+QIYGSSVN +RHKCLSVIGKLMYFSS+EMIQSL+ TNI
Sbjct: 541 LGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNI 600
Query: 429 SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
SSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G +
Sbjct: 601 SSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGKS---- 656
Query: 489 SQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVN 548
S AS DKDND +PGS+RSRRYRRRS NAN + N SEE KN S+N+G+ +S++ PT +
Sbjct: 657 SHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNSASLNIGANHNSLDTPTAS 716
Query: 549 SNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSK 608
L+ VS+ AKAFK+KYFPSD G +VGVTD LLH+KNLC KL AG+DD + K KGKSK
Sbjct: 717 FMLKETVSSCAKAFKDKYFPSDGGDLDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSK 776
Query: 609 ASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KE 666
ASG L D SA+KEEYLIGVISE+L ELS GDGVSTFEFIGSGVVAA LNYFSCGY KE
Sbjct: 777 ASGPCLGDFSASKEEYLIGVISEILGELSKGDGVSTFEFIGSGVVAAFLNYFSCGYFSKE 836
Query: 667 RMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLS 726
++SE + KLRQ+ L+RFK+F+ VALP + G V PMTVL+QKLQNALSSLERFPVVLS
Sbjct: 837 KISELILPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLS 896
Query: 727 HSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLW 786
H +RS +GSARLSSGLSAL+ P KLRLCRA G+K+LRDYSSN+VLIDPLAS+AAVEEFLW
Sbjct: 897 HPSRSLSGSARLSSGLSALAHPLKLRLCRAPGEKTLRDYSSNIVLIDPLASIAAVEEFLW 956
Query: 787 PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
PRVQR+ES KP+A GN+E GT P+G G SSPS+STPAS+ RHSSRSR ++NIGD K
Sbjct: 957 PRVQRSESALKPAAPAGNTEPGTLPSGVGVSSPSSSTPASTTRRHSSRSRSAINIGDTSK 1016
Query: 847 KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
K+P EKGTSSSKGKGK V+K AQ + +GPQTR++A++RA LDKD QMK A+GDSSSEDE
Sbjct: 1017 KDPVPEKGTSSSKGKGKGVMKPAQAD-KGPQTRSSAQKRAVLDKDTQMKPASGDSSSEDE 1075
Query: 907 ELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTV 966
ELDISPV+IDDALVIE +D D++DD + + DDSLP+C DKVHDVKL DS +D
Sbjct: 1076 ELDISPVDIDDALVIE-EDDISDDEDDDNEDVLDDSLPMCTPDKVHDVKLADSVDDDGL- 1133
Query: 967 PSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVR 1026
+ S Q NPASG +S A RGSDS D GNSYGSRGA+SFAAAAMAGLG+A+GRG+R
Sbjct: 1134 -ATSGRQMNPASGGTSGAAAARGSDSTDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIR 1192
Query: 1027 GGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFIS 1086
G RD HGR L SS+EP KLIFT GGKQL+RHLTIYQA+QRQL+LDED+D+RFGGSD IS
Sbjct: 1193 GSRDLHGRTLNRSSDEPSKLIFTAGGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLIS 1252
Query: 1087 SDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSAS-RMSLLD 1145
SDGSR +NDIYTI YQR DSQ +R+S G +SS TPSKS+KS + +NS+ +S S R SLLD
Sbjct: 1253 SDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTTNSSVESQSHRASLLD 1311
Query: 1146 SILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGT 1205
SILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD+LS T
Sbjct: 1312 SILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLDDLSTT 1371
Query: 1206 GVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYST 1265
++P+EEF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQYFYST
Sbjct: 1372 AAKIPHEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYST 1431
Query: 1266 AFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQK 1325
AFGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQK
Sbjct: 1432 AFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQK 1491
Query: 1326 AVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385
AVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+V L MWRS SS + SM+ID DE + GK+
Sbjct: 1492 AVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRS-SSGDKVSMQIDRDEIEDGKS 1550
Query: 1386 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFS 1445
S + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P S
Sbjct: 1551 SAANIDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLS 1610
Query: 1446 TAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGA 1505
TAFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE++ DN V DL RG+
Sbjct: 1611 TAFYKLILGQELDLHDIVLFDAELGKTLQELRVLVARKHYLEAVGGDNSSTVSDLCLRGS 1670
Query: 1506 PIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQ 1565
IEDLCLDFTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQ
Sbjct: 1671 RIEDLCLDFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQ 1730
Query: 1566 VFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTP 1625
VFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGYTAKSPAI+NLLEIMGE T
Sbjct: 1731 VFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYTAKSPAIINLLEIMGELTA 1790
Query: 1626 DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVM 1685
DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVM
Sbjct: 1791 DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAATNGAGASETADDDLPSVM 1849
Query: 1686 TCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
TCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1850 TCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1884
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1720 | ||||||
| TAIR|locus:2121224 | 1888 | KAK "AT4G38600" [Arabidopsis t | 0.990 | 0.902 | 0.676 | 0.0 | |
| UNIPROTKB|Q0E4T3 | 718 | Os02g0101700 "Os02g0101700 pro | 0.392 | 0.940 | 0.702 | 4.2e-253 | |
| DICTYBASE|DDB_G0287221 | 1898 | DDB_G0287221 "armadillo repeat | 0.266 | 0.241 | 0.433 | 2.5e-222 | |
| TAIR|locus:2151306 | 1502 | UPL4 "AT5G02880" [Arabidopsis | 0.184 | 0.211 | 0.552 | 1.7e-221 | |
| ZFIN|ZDB-GENE-041111-262 | 2095 | trip12 "thyroid hormone recept | 0.254 | 0.208 | 0.435 | 2.1e-163 | |
| UNIPROTKB|Q14669 | 1992 | TRIP12 "E3 ubiquitin-protein l | 0.254 | 0.219 | 0.430 | 2.1e-158 | |
| UNIPROTKB|J9NRQ4 | 2011 | TRIP12 "Uncharacterized protei | 0.254 | 0.217 | 0.430 | 3.1e-158 | |
| UNIPROTKB|Q7S5Y8 | 1933 | NCU09866 "Putative uncharacter | 0.277 | 0.246 | 0.413 | 3.6e-158 | |
| UNIPROTKB|E1B7Q7 | 1992 | TRIP12 "E3 ubiquitin-protein l | 0.254 | 0.219 | 0.430 | 1.8e-157 | |
| UNIPROTKB|E2R657 | 1993 | TRIP12 "Uncharacterized protei | 0.254 | 0.219 | 0.430 | 2.4e-157 |
| TAIR|locus:2121224 KAK "AT4G38600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5737 (2024.6 bits), Expect = 0., P = 0.
Identities = 1164/1720 (67%), Positives = 1287/1720 (74%)
Query: 3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLV 62
GSASSSH +GR+KKILSGLRA+GEEGKQVEALTQLCEMLSIGTE+SLSTFSVDSF PVLV
Sbjct: 184 GSASSSHLNGRMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLV 243
Query: 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQ 122
GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+C VARLLTIEYMDLAEQSLQ
Sbjct: 244 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQ 303
Query: 123 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAV 182
ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+D+VMEAV
Sbjct: 304 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAV 363
Query: 183 PLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242
PLLTNLLQYHD+KVLE+AS+CLTRIAEAFA P+KLDELCNHGLVTQAA+LISTSNSGGG
Sbjct: 364 PLLTNLLQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGG 423
Query: 243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302
QASLS TYTGLIRLLSTCASGSPL +TLL LGIS ILKDIL GSGVSAN++V PALSR
Sbjct: 424 QASLSVSTYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSR 483
Query: 303 PAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 362
PA+QI+EIVNLANELLPPLP+G ISLP+S+N VKG +KS S+SGKQ+D ++
Sbjct: 484 PADQIYEIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKI 539
Query: 363 SAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSL 422
S REKLL DQPELLQQFG+DLLPVL+QIYGSSVN +RHKCLSVIGKLMYFSS+EMIQSL
Sbjct: 540 SPREKLLGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSL 599
Query: 423 LSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 482
+ TNISSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G
Sbjct: 600 IGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVG 659
Query: 483 NTNTVPSQASSADKDNDSIPGXXXXXXXXXXXGNANPECNSSEESKXXXXXXXXXXXXXX 542
PS AS DKDND +PG NAN + N SEE K
Sbjct: 660 K----PSHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSL 715
Query: 543 EIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTX 602
+ PT + LR VS+ AKAFK+KYFPSD G +VGVTD LLH+KNLC KL AG+DD +
Sbjct: 716 DTPTASFMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVK 775
Query: 603 XXXXXXXXXXRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSC 662
L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSC
Sbjct: 776 GKGKSKASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSC 835
Query: 663 GY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLER 720
GY KE++SE N+ KLRQ+ L+RFK+F+ VALP + G V PMTVL+QKLQNALSSLER
Sbjct: 836 GYFSKEKISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLER 895
Query: 721 FPVVLSHXXXXXXXXXXXXXXXXXXXQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAA 780
FPVVLSH P KLRLCRA G+K+LRDYSSN+VLIDPLASLAA
Sbjct: 896 FPVVLSHPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAA 955
Query: 781 VEEFLWPRVQRNESGQKPSASVGNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVN 840
VEEFLWPRVQR+ES KP+A +GN+E +N
Sbjct: 956 VEEFLWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAIN 1015
Query: 841 IGDGMKKEPSQEXXXXXXXXXXXAVLKSAQEEVRGPQTXXXXXXXXXLDKDAQMKQANGX 900
IGD KK+P E V+K AQ + +GPQT LDKD QMK A+G
Sbjct: 1016 IGDTSKKDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGD 1074
Query: 901 XXXXXXXXXISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCLSDKVHDVKLGDSA 960
ISP P+C DKVHDVKL DS
Sbjct: 1075 SSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDVLDDSL-PMCTPDKVHDVKLADSV 1133
Query: 961 EDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXX 1020
+D + S Q NP D GNSY
Sbjct: 1134 DDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAA 1191
Query: 1021 XXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXX 1080
L SS+EP KLIFT GKQL+RHLTIYQA+QRQL+LDED+D+R
Sbjct: 1192 SGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFG 1251
Query: 1081 XXXXXXXXXXRLWNDIYTITYQRADSQADRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1140
R +NDIYTI YQR DSQ +R+
Sbjct: 1252 GSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHR 1310
Query: 1141 XXLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLD 1200
LLDSILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD
Sbjct: 1311 ASLLDSILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLD 1370
Query: 1201 ELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQ 1260
+LS T +VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQ
Sbjct: 1371 DLSTTAAKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQ 1430
Query: 1261 YFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEM 1320
YFYSTAFGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEM
Sbjct: 1431 YFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEM 1490
Query: 1321 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEG 1380
YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+ L MWRS SS + SM+I DE
Sbjct: 1491 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEI 1549
Query: 1381 KSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
+ GK S + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLL
Sbjct: 1550 EDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLL 1609
Query: 1441 DLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDL 1500
D+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE + DN + DL
Sbjct: 1610 DVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDL 1669
Query: 1501 RFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFR 1560
RG IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR
Sbjct: 1670 CLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFR 1729
Query: 1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
+GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGY AKSPAI+NLLEIM
Sbjct: 1730 SGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIM 1789
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD 1680
GE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDD
Sbjct: 1790 GELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDD 1848
Query: 1681 LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
LPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1849 LPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
|
|
| UNIPROTKB|Q0E4T3 Os02g0101700 "Os02g0101700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2437 (862.9 bits), Expect = 4.2e-253, P = 4.2e-253
Identities = 489/696 (70%), Positives = 559/696 (80%)
Query: 1036 LFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXXXXXXXXXXXXRLWND 1095
L GS NE KLIF GGKQL++HLT+YQA+QRQL+ +ED+DE+ R W D
Sbjct: 33 LGGSINEHNKLIFMAGGKQLSKHLTVYQALQRQLMFEEDDDEKFNGSDLSNDGN-RFWGD 91
Query: 1096 IYTITYQRADSQADRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSILQGELPCD 1155
++TITYQ+ADSQA+++ LLDSILQ ELPCD
Sbjct: 92 VFTITYQKADSQAEKVSQGGSTSLNSKSDPSRSISELKGVS------LLDSILQAELPCD 145
Query: 1156 LEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFI 1215
LE++N TY ILALLRVLEGLNQL+PRLR D +AEGKI++LDEL TG +VP EEF+
Sbjct: 146 LERTNSTYNILALLRVLEGLNQLSPRLRVHAASDDFAEGKITTLDELYRTGAKVPSEEFV 205
Query: 1216 NSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYR 1275
NSKLTPKLARQ+QD LALCSGSLPSWCYQ+TKACPFLFPFETRRQYFYSTAFGLSRAL R
Sbjct: 206 NSKLTPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLSRALNR 265
Query: 1276 LQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGE 1335
LQQQQG D + EREIR GRL+RQKVRVSRNRILDSAAKVMEM+SSQ+AVLEVEYFGE
Sbjct: 266 LQQQQG-DNQNAGGEREIRFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVLEVEYFGE 324
Query: 1336 VGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDG----DEGKSGK--TSNI- 1388
VGTGLGPTLEFYTLLS +LQ V L +WRS+S S+ M+ID D+ + K +S++
Sbjct: 325 VGTGLGPTLEFYTLLSHELQSVRLGLWRSSSPSDT-GMQIDRSASPDDDLAAKELSSDLP 383
Query: 1389 -SGD-LVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFST 1446
+G L+ AP GLFPRPWP + DASEG +FSKVIE+FRL+GRVMAK LQDGRLLDLP ST
Sbjct: 384 DNGSHLIQAPFGLFPRPWPLTVDASEGSRFSKVIEHFRLVGRVMAKVLQDGRLLDLPLST 443
Query: 1447 AFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAP 1506
A YKL+LG ELDL DII FDAEFGK LQEL ++V RK+ LES N EV DLRFRG P
Sbjct: 444 ALYKLILGQELDLFDIISFDAEFGKTLQELQILVERKRFLESTYGMNQLEVTDLRFRGTP 503
Query: 1507 IEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFN 1564
IEDLCLDFTLPGYPDYILK G+EN V+I NLEEY++LVVDATVK+GIMRQ+EAFR+GFN
Sbjct: 504 IEDLCLDFTLPGYPDYILKEGEENTIVNIYNLEEYVTLVVDATVKSGIMRQVEAFRSGFN 563
Query: 1565 QVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFT 1624
QVFDI+SL+IF+P ELD+L+CGRRE+WEP +L ++IKFDHGYTAKSPAIVNLLEIM EFT
Sbjct: 564 QVFDISSLKIFSPEELDYLICGRREIWEPDSLVDNIKFDHGYTAKSPAIVNLLEIMAEFT 623
Query: 1625 PDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSV 1684
P+QQ AFCQFVTGAPRLPPGGLA LNPKLTIVRKH S+A NT SN G +ESADDDLPSV
Sbjct: 624 PEQQHAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPSSAVNT-SNIAGVTESADDDLPSV 682
Query: 1685 MTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
MTCANYLKLPPYSTKE+M KKL+YAI EG+GSFDLS
Sbjct: 683 MTCANYLKLPPYSTKEVMRKKLLYAILEGRGSFDLS 718
|
|
| DICTYBASE|DDB_G0287221 DDB_G0287221 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 2.5e-222, Sum P(7) = 2.5e-222
Identities = 211/487 (43%), Positives = 314/487 (64%)
Query: 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPD 72
R K +L GL+++ +E KQ+E+L +LC++LSI TEE+++ F DSFAP LV LLN + NPD
Sbjct: 108 RAKLLLQGLKSE-DETKQMESLLELCDLLSIATEETIAGFPSDSFAPALVNLLNMDHNPD 166
Query: 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132
IMLLA RAL ++ + LPSS A+V+++GAVT ++LL+IEY+DLAEQ LQ L+KISQE P
Sbjct: 167 IMLLAGRALCNMIEALPSSVASVINHGAVTILCSKLLSIEYIDLAEQCLQTLEKISQEQP 226
Query: 133 TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH 192
T LRAG LMA LSY+DFFSTGVQR+A++TA+N+C+++P D + V +++P+LTNLLQY
Sbjct: 227 TVVLRAGGLMATLSYIDFFSTGVQRMAITTASNICRQVPQDCFELVRDSIPILTNLLQYS 286
Query: 193 DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252
D KV+E + +C +R+ ++F SP+KL+ + + GL+ +IS S SLS TYT
Sbjct: 287 DQKVVELSCLCFSRLIDSFYDSPNKLEVITSKGLMPHLVRIISGMYSS--TTSLSPNTYT 344
Query: 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 312
+IR+++ G P +LL+ GI I++ I+ S N A P A +R +Q FE+++
Sbjct: 345 QIIRIMAAVCHGCPNITLSLLNEGIISIIQQIMYPS----NEANPTA-NRSNQQCFEVLS 399
Query: 313 LANELLPPLPQG-TISLPSSSNMFVKGPVVRKSPASSSGKQDD----------------- 354
L NE+LPPLP ++ S N+ R S +SSS ++ +
Sbjct: 400 LINEILPPLPSDFSLLFQQSRNLLTSFGSGRSSSSSSSSRRRELEATIAAGAGTTTTTTT 459
Query: 355 -TNGNASEVSA--REKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 411
T SE + R + + PELL+ G L VL++++ S+VN VR+K L I K++
Sbjct: 460 TTTTTTSEPTEDPRITIFKEDPELLKSLGQGLFTVLVEMFTSNVNPAVRYKSLGSIIKIL 519
Query: 412 YFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGV 471
Y+S +E ++ LL SSFLA +L +D ++ +L+I E++ME+LP F + F REGV
Sbjct: 520 YYSPSETVKELLREFAFSSFLASLLGSRDMAIVASALKIVELMMERLPDIFDRFFKREGV 579
Query: 472 VHAVDQL 478
V+ VD+L
Sbjct: 580 VYEVDRL 586
|
|
| TAIR|locus:2151306 UPL4 "AT5G02880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 1.7e-221, Sum P(5) = 1.7e-221
Identities = 188/340 (55%), Positives = 229/340 (67%)
Query: 1383 GKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDL 1442
GK SG L + GLFPRPW ++ S+ V++ F LLG V+AKALQDGR+LDL
Sbjct: 1183 GKPVEHSGVLASSS-GLFPRPWSGTSTTSD------VLQKFVLLGTVVAKALQDGRVLDL 1235
Query: 1443 PFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRF 1502
P S AFYKL+LG EL DI D E K L EL +V RK+ D+ DL F
Sbjct: 1236 PLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSF 1295
Query: 1503 RGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFR 1560
G IEDLCL+F LPGY DY L P N V+++NLEEYI +V+ATV GI +Q+EAFR
Sbjct: 1296 HGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFR 1355
Query: 1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
+GFNQVF I L+IF EL+ +LCG +L+ + +HIKFDHGYT+ SP + LL+I+
Sbjct: 1356 SGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQIL 1415
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD 1680
EF +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH S +S+D D
Sbjct: 1416 HEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGS-------------DSSDTD 1462
Query: 1681 LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
LPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1463 LPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
|
|
| ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 2.1e-163, Sum P(6) = 2.1e-163
Identities = 205/471 (43%), Positives = 277/471 (58%)
Query: 1209 VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1268
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF
Sbjct: 1601 IPTGEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFD 1660
Query: 1269 LSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
RA+ RL D + +N+ ++ RV RL+R+K ++R+ +L A VM+ S
Sbjct: 1661 RDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSS 1715
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSG 1383
+A+LE++Y EVGTGLGPT EFY L+S++LQR L +WR + NP EG
Sbjct: 1716 RAMLEIQYENEVGTGLGPTQEFYALVSQELQRADLGLWRGEEVTLSNPK---GSQEGTKY 1772
Query: 1384 KTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443
S S L P G +P +K+ FR LG++MAKA+ D RLLDLP
Sbjct: 1773 MFS--SRGLFAVPFGRTTKP----------AHIAKIKMKFRFLGKLMAKAIMDFRLLDLP 1820
Query: 1444 FSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVV 1498
FYK +L HE + HD++ D K +Q L I+ +K+ +E S T + ++ +
Sbjct: 1821 LGLPFYKWMLRHESSISSHDLVNIDPGVAKSIQHLEDIIRQKKRIEQDRSHTRETLQQAL 1880
Query: 1499 D-LRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQ 1555
+ L G +EDL LDFTLPG+P+ LK G D V I+NLE+Y+ LVV T+ G++RQ
Sbjct: 1881 ESLNMNGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEDYLRLVVYWTLNEGVLRQ 1940
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIV 1614
E+FR GF VF + LQ F P ELD LLCG + E W+ L E + DHGYT S A+
Sbjct: 1941 FESFREGFESVFPLHHLQYFYPEELDQLLCGSKSESWDVKTLMECCRPDHGYTHDSRAVR 2000
Query: 1615 NLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN 1665
L E++ F +QQR F QFVTG+PRLP GG LNP LTIVRK + N
Sbjct: 2001 FLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 2051
|
|
| UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 2.1e-158, Sum P(6) = 2.1e-158
Identities = 203/471 (43%), Positives = 276/471 (58%)
Query: 1209 VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1268
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF
Sbjct: 1498 IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFD 1557
Query: 1269 LSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+ S
Sbjct: 1558 RDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDLGSS 1612
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSG 1383
+A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G + +
Sbjct: 1613 RAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQEGTK 1668
Query: 1384 KTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443
N+ G L P G +P +KV FR LG++MAKA+ D RL+DLP
Sbjct: 1669 YIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLP 1717
Query: 1444 FSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVV 1498
FYK +L E L HD+ D + + L IV +K+ LE S T ++ + +
Sbjct: 1718 LGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYAL 1777
Query: 1499 D-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQ 1555
+ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G+ RQ
Sbjct: 1778 ETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQ 1837
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIV 1614
++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+
Sbjct: 1838 FDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVK 1897
Query: 1615 NLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN 1665
L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + N
Sbjct: 1898 FLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 1948
|
|
| UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 3.1e-158, Sum P(6) = 3.1e-158
Identities = 203/471 (43%), Positives = 276/471 (58%)
Query: 1209 VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1268
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF
Sbjct: 1517 IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFD 1576
Query: 1269 LSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+ S
Sbjct: 1577 RDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDLGSS 1631
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSG 1383
+A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G + +
Sbjct: 1632 RAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQEGTK 1687
Query: 1384 KTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443
N+ G L P G +P +KV FR LG++MAKA+ D RL+DLP
Sbjct: 1688 YIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLP 1736
Query: 1444 FSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVV 1498
FYK +L E L HD+ D + + L IV +K+ LE S T ++ + +
Sbjct: 1737 LGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYAL 1796
Query: 1499 D-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQ 1555
+ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G+ RQ
Sbjct: 1797 ETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQ 1856
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIV 1614
++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+
Sbjct: 1857 FDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVK 1916
Query: 1615 NLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN 1665
L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + N
Sbjct: 1917 FLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 1967
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| UNIPROTKB|Q7S5Y8 NCU09866 "Putative uncharacterized protein" [Neurospora crassa OR74A (taxid:367110)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 3.6e-158, Sum P(4) = 3.6e-158
Identities = 215/520 (41%), Positives = 310/520 (59%)
Query: 1210 PYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGL 1269
P +F+N+KLT KL RQ+++ L + S LPSW L + PFLFPFETR + ST+FG
Sbjct: 1448 PLSQFVNTKLTAKLNRQLEEPLIVASNCLPSWSEDLARLYPFLFPFETRHLFLQSTSFGY 1507
Query: 1270 SRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLE 1329
+R++ R Q + ++R +GRL+RQKVR+SR++IL+SA KVME+Y + +++LE
Sbjct: 1508 ARSMARWNAQSQEERRNGRDDRPY-LGRLQRQKVRISRSKILESAVKVMELYGASQSILE 1566
Query: 1330 VEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNIS 1389
VEYF EVGTGLGPTLEFY+ +S++ + L +WR N E++GD+
Sbjct: 1567 VEYFEEVGTGLGPTLEFYSTVSKEFSKRKLKLWRDN--------ELNGDD---------- 1608
Query: 1390 GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFY 1449
D V P GLFPRP +SE G+ K+++ F++LG+ +A+++ D R++D+ F+ F+
Sbjct: 1609 -DFVSGPTGLFPRPLSDEFASSEEGE--KILQLFKVLGKFVARSMIDSRIIDINFNPLFF 1665
Query: 1450 KL--VLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHL-ESMTSDNCEEVVD---LRFR 1503
++ L I D + L + K+ + E ++V D +
Sbjct: 1666 RVGDSTATRPTLATIKSVDPVVARSLMTIKKFSLAKKEIDEDPNRSAVQKVADTENITID 1725
Query: 1504 GAPIEDLCLDFTLPGYPDY-ILKPGDEN-VDINNLEEYISLVVDATVKTGIMRQMEAFRA 1561
I+DL LDFTLPGYP+ ++ G + + I N++ Y+ V+D T+ +G+ RQ+EAFR+
Sbjct: 1726 NFKIDDLYLDFTLPGYPEVELVSNGSQTRLTIENVDLYLEKVIDMTLGSGVRRQIEAFRS 1785
Query: 1562 GFNQVFDITSLQIFTPHELDHLLCGR-RELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
GF+QVF ++L FTP EL L GR E W L + IK DHGY S ++ NLL+IM
Sbjct: 1786 GFSQVFPYSALSSFTPDELCTLF-GRVDEDWSLETLNDSIKADHGYNMDSKSVRNLLQIM 1844
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD 1680
E T ++R F QF TG+P+LP GG LNP T+V K S AP T+ DD
Sbjct: 1845 SELTLAERRDFLQFTTGSPKLPIGGFKSLNPMFTVVCKPSE-APYTS----------DDY 1893
Query: 1681 LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
LPSVMTC NYLKLP YS ++ K+L A+ EGQG+F LS
Sbjct: 1894 LPSVMTCVNYLKLPDYSDIGVLKKQLFTAMKEGQGAFHLS 1933
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| UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 1.8e-157, Sum P(6) = 1.8e-157
Identities = 203/471 (43%), Positives = 276/471 (58%)
Query: 1209 VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1268
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF
Sbjct: 1498 IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFD 1557
Query: 1269 LSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+ S
Sbjct: 1558 RDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDLGSS 1612
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSG 1383
+A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G + +
Sbjct: 1613 RAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQEGTK 1668
Query: 1384 KTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443
N+ G L P G +P +KV FR LG++MAKA+ D RL+DLP
Sbjct: 1669 YIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLP 1717
Query: 1444 FSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVV 1498
FYK +L E L HD+ D + + L IV +K+ LE S T ++ + +
Sbjct: 1718 LGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYAL 1777
Query: 1499 D-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQ 1555
+ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G+ RQ
Sbjct: 1778 ETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQ 1837
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIV 1614
++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+
Sbjct: 1838 FDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVK 1897
Query: 1615 NLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN 1665
L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + N
Sbjct: 1898 FLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 1948
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| UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 2.4e-157, Sum P(6) = 2.4e-157
Identities = 203/471 (43%), Positives = 276/471 (58%)
Query: 1209 VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1268
+P EFINSKLT K RQ+QD L + +G++P+W +L K CPF FPF+TR+ FY TAF
Sbjct: 1499 IPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFD 1558
Query: 1269 LSRALYRLQQQQGADGHGSVNE---REIRVG-RLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
RA+ RL D + +N+ ++ RV RL+R+K V+R +L A VM+ S
Sbjct: 1559 RDRAMQRL-----LDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDLGSS 1613
Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSS-ENPSMEIDGDEGKSG 1383
+A+LE++Y EVGTGLGPTLEFY L+S++LQR L +WR + NP G + +
Sbjct: 1614 RAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK----GSQEGTK 1669
Query: 1384 KTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443
N+ G L P G +P +KV FR LG++MAKA+ D RL+DLP
Sbjct: 1670 YIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLP 1718
Query: 1444 FSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIVCRKQHLE---SMTSDNCEEVV 1498
FYK +L E L HD+ D + + L IV +K+ LE S T ++ + +
Sbjct: 1719 LGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYAL 1778
Query: 1499 D-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQ 1555
+ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G+ RQ
Sbjct: 1779 ETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQ 1838
Query: 1556 MEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIV 1614
++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+
Sbjct: 1839 FDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVK 1898
Query: 1615 NLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN 1665
L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + N
Sbjct: 1899 FLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN 1949
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6WWW4 | UPL3_ARATH | 6, ., 3, ., 2, ., - | 0.7695 | 0.9866 | 0.8988 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_700052.1 | annotation not avaliable (1884 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1720 | |||
| cd00078 | 352 | cd00078, HECTc, HECT domain; C-terminal catalytic | 1e-118 | |
| smart00119 | 328 | smart00119, HECTc, Domain Homologous to E6-AP Carb | 3e-92 | |
| pfam00632 | 298 | pfam00632, HECT, HECT-domain (ubiquitin-transferas | 1e-91 | |
| COG5021 | 872 | COG5021, HUL4, Ubiquitin-protein ligase [Posttrans | 3e-78 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-08 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-05 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 9e-05 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-04 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.001 | |
| pfam11705 | 221 | pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym | 0.003 |
| >gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-118
Identities = 155/420 (36%), Positives = 212/420 (50%), Gaps = 75/420 (17%)
Query: 1301 QKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTG-LGPTLEFYTLLSRDLQRV 1357
K+ V R+RIL+ A + + SS K VLEVE+ GE G G T EF+TL+S++L
Sbjct: 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNP 60
Query: 1358 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1417
++R L+P P + +
Sbjct: 61 SYGLFRYTPDDSG---------------------------LLYPNPSSFADE-------- 85
Query: 1418 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1477
++ FR LGR++ KAL +GRLLDLPFS AFYK +LG L L D+ D E K L+EL
Sbjct: 86 DHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKEL- 144
Query: 1478 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINN 1535
D E+ ++L F + LD + G LKPG D V N
Sbjct: 145 ---------LDNDGD--EDDLELTF------TIELDSSFGGAVTVELKPGGRDIPVTNEN 187
Query: 1536 LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAA 1595
EEY+ L VD + GI Q+EAFR GF++V L +FTP EL+ L+CG + +
Sbjct: 188 KEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLED 246
Query: 1596 LAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI 1655
L ++ ++ GY++ SP I E++ FT ++++ F QFVTG+ RLP GG A LNPK TI
Sbjct: 247 LKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTI 306
Query: 1656 VRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1715
R S DD LP+ TC N LKLPPYS+KEI+ +KL+YAI+EG G
Sbjct: 307 RRVGSP----------------DDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAG 350
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It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352 |
| >gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 3e-92
Identities = 137/395 (34%), Positives = 197/395 (49%), Gaps = 73/395 (18%)
Query: 1324 QKAVLEVEYFGEVG-TGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKS 1382
+K VLE+E+ GE G G G T EF+ LLS++L ++R + +
Sbjct: 3 KKRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDY------------- 49
Query: 1383 GKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDL 1442
L+P P + + S YFR +GRV+ KAL D RLLDL
Sbjct: 50 ---------------LLYP---NPRSGFANEEHLS----YFRFIGRVLGKALYDNRLLDL 87
Query: 1443 PFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRF 1502
F+ FYK +LG + LHD+ D E K L+ L L + TS+ +DL F
Sbjct: 88 FFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLL--------LNNDTSE----ELDLTF 135
Query: 1503 RGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFR 1560
+ L LKPG N+ + N +EY+ LV++ + GI +Q+EAFR
Sbjct: 136 ------SIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFR 189
Query: 1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
GF++V L++F P EL+ L+CG E + L + ++ GY+A S I E++
Sbjct: 190 EGFSEVIPENLLKLFDPEELELLICGSPE-IDVDDLKSNTEYKGGYSANSQTIKWFWEVV 248
Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD 1680
FT +++R QFVTG+ RLP GG A L+PK TI + S D+
Sbjct: 249 ESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSD----------------DER 292
Query: 1681 LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1715
LP+ TC N LKLPPYS+KEI+ +KL+ AI+EG+G
Sbjct: 293 LPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKG 327
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E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328 |
| >gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 1e-91
Identities = 123/344 (35%), Positives = 167/344 (48%), Gaps = 59/344 (17%)
Query: 1388 ISGDLVHAPLGLFPRP-------WPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
+S +L + GLF WP S E F+ LG ++ KA+ +G LL
Sbjct: 3 LSKELFNPDYGLFFYVTPNSGLLWPNPGSPES----SADEELFKFLGALIGKAIYNGILL 58
Query: 1441 DLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDL 1500
DLPF AF+K +LG + L D+ D E + L+ L + D
Sbjct: 59 DLPFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSL----------LELDGD-------- 100
Query: 1501 RFRGAPIEDLCLDFTLPGY--PDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQM 1556
E+LCL FT+ G L P N V N EEY++L VD + I +Q+
Sbjct: 101 ------EEELCLTFTVSGEGEGTIELIPNGSNIPVTNENKEEYVNLYVDYRLNESIKKQL 154
Query: 1557 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNL 1616
EAFR GF V L +FTP EL+ L+CG E + L ++ ++D GY+ SP I
Sbjct: 155 EAFREGFYSVIPKELLSLFTPEELELLICGSPE-IDVEDLKKNTEYDGGYSKNSPTIKWF 213
Query: 1617 LEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSES 1676
E++ EFT +++R F +FVTG+ RLP GG K+TI RK
Sbjct: 214 WEVLEEFTQEERRKFLKFVTGSSRLPLGGFK--KLKITIQRKDD---------------- 255
Query: 1677 ADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720
DD LP+ TC N LKLPPYS+KEI+ +KL+ AI EG F LS
Sbjct: 256 -DDRLPTAHTCFNRLKLPPYSSKEILKEKLLIAIEEGSEGFGLS 298
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The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298 |
| >gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 3e-78
Identities = 134/510 (26%), Positives = 200/510 (39%), Gaps = 58/510 (11%)
Query: 1214 FINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSR-A 1272
+L R+ ++ + S + P L ++TR Y F R
Sbjct: 413 TYEDLRREQLGRESDESFYVASNVQQQRASREG---PLLSGWKTRLNNLYRFYFVEHRKK 469
Query: 1273 LYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEV-- 1330
+ R+ +R+K+ S + + + + V E
Sbjct: 470 TLTKNDSRLGSFISLNKLDIRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSY 529
Query: 1331 -EYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNIS 1389
E E G L TLE + + GL S+ M G I+
Sbjct: 530 REIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSK--EMFNPDY----GLFEYIT 583
Query: 1390 GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFY 1449
DL P + +S + + YF+ LGRV+ KA+ D R+LD+ FS AFY
Sbjct: 584 EDL---------YTLPINPLSSIN---PEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFY 631
Query: 1450 KLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED 1509
K +LG + L D+ D E + L L L D E ++DL F +ED
Sbjct: 632 KKLLGKPVSLVDLESLDPELYRSLVWL---------LN-NDID--ETILDLTFT---VED 676
Query: 1510 LCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVF 1567
+ L P N+ + N +EY+ VVD + + +Q AF++GF+++
Sbjct: 677 DSFGESRT----VELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEII 732
Query: 1568 DITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQ 1627
LQIF EL+ L+ G E + + HGYT SP IV EI+ EF ++
Sbjct: 733 PPDLLQIFDESELELLIGGIPEDIDIDDWKSNTA-YHGYTEDSPIIVWFWEIISEFDFEE 791
Query: 1628 QRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTC 1687
+ QFVTG R+P G L + + + DD LPS TC
Sbjct: 792 RAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGG-----------TDDDRLPSAHTC 840
Query: 1688 ANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1717
N LKLP YS+KE + KL+ AI+EG G
Sbjct: 841 FNRLKLPEYSSKEKLRSKLLTAINEGAGFG 870
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Length = 872 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P LV LL S+ ++ AA AL++L + AVV G + V +LL E ++ +
Sbjct: 10 PALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEVVK 67
Query: 119 QSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167
+L AL+ ++ L AG + +++ LD + +Q+ A +N+
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 10/155 (6%)
Query: 809 TAPTGAGASSPSTSTPASSALRHSS------RSRLSVNIGDGMKKEPSQEKGTSSSKGKG 862
GA AS S S+ S DG + S+
Sbjct: 150 QQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGT 209
Query: 863 KAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIE 922
E + +++A K + Q +G S ++ + + D+ +
Sbjct: 210 LEQRIKGAEGGGAMKVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDD--DDDEDAIES 267
Query: 923 DDDISDDE--DDDHEDVLKDDSLPLCLSDKVHDVK 955
D D SDD+ D+D ED+ D++ LC DKV K
Sbjct: 268 DLDDSDDDVSDEDGEDLFDTDNVMLCQYDKVQRSK 302
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-05
Identities = 65/280 (23%), Positives = 124/280 (44%), Gaps = 22/280 (7%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
L ++ L +D E +Q++A+ + ++LS T + P V ++ +
Sbjct: 73 LPQLTQQLFSDDIE-QQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDML 131
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
AA ALT++ VV GAV F+ L + E D+ EQ++ AL I+ +
Sbjct: 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSE- 189
Query: 134 AC----LRAGALMAVLSYLDFFSTGVQ--RVALSTAANMCK-KLPSDAADFVMEAVPLLT 186
C L+ GAL +L L + + R A T +N+C+ K P + +A+P+L
Sbjct: 190 GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA 249
Query: 187 NLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246
L+ D +VL A ++ +++ +K+ + + G+ + L+S + A +
Sbjct: 250 KLIYSRDPEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHES-----AKI 301
Query: 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
TP +R + +GS + +++ G + +LS
Sbjct: 302 QTP----ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS 337
|
Length = 526 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 22/191 (11%)
Query: 796 QKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPSQEKGT 855
S + T S + + K P+++K
Sbjct: 41 ALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAA---KAAAAKAPAKKKLK 97
Query: 856 SSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDISPVEI 915
KA K+A ++ D D + + D +D++LD ++
Sbjct: 98 DELDSSKKAEKKNALDK--------DDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD 149
Query: 916 DDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNN 975
DD +D+D DD+ DD ++ K+ +K+ D ED
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKEL----EKLSDDDDFVWDED-------DSEALR 198
Query: 976 PASGSSSRGAT 986
A + AT
Sbjct: 199 QARKDAKLTAT 209
|
Length = 509 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES 69
Q G L+ +L L + + T L G ++ P+L L+
Sbjct: 197 QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR- 255
Query: 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI-- 127
+P++++ A A+++L D AV+ G V LL+ E + +L+++ I
Sbjct: 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV-ELLSHESAKIQTPALRSVGNIVT 314
Query: 128 -SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEA--VPL 184
S + + GAL A S L +++ A T +N+ ++ V++A +P
Sbjct: 315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG-NTEQIQAVIDANLIPP 373
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLV 227
L +LL + K+ + A ++ + PD + L + G +
Sbjct: 374 LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFI 416
|
Length = 526 |
| >gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 845 MKKEPSQEKGTSSSKGKGKAVLKS--AQEEVRGPQTRNAARRRA-ALDKDAQMKQANGDS 901
M K + SK K K L + ++ + A D D + + + +
Sbjct: 120 MGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEE-DEKDEEE 178
Query: 902 SSEDEELDISPVEIDDALVIEDDDISDDEDDDHED 936
E+EE ED+D DD+DDD +D
Sbjct: 179 EEEEEE--------------EDEDFDDDDDDDDDD 199
|
RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1720 | |||
| KOG0170 | 621 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 100.0 | |
| COG5021 | 872 | HUL4 Ubiquitin-protein ligase [Posttranslational m | 100.0 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| cd00078 | 352 | HECTc HECT domain; C-terminal catalytic domain of | 100.0 | |
| KOG0942 | 1001 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| smart00119 | 336 | HECTc Domain Homologous to E6-AP Carboxyl Terminus | 100.0 | |
| KOG4427 | 1096 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| KOG0939 | 720 | consensus E3 ubiquitin-protein ligase/Putative ups | 100.0 | |
| PF00632 | 317 | HECT: HECT-domain (ubiquitin-transferase); InterPr | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| KOG0940 | 358 | consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos | 100.0 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.93 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.93 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.92 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.71 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.64 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.52 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.48 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.33 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.22 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.14 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.1 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.01 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.95 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.92 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.87 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.46 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.45 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 98.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.37 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 98.34 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.32 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.28 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 98.26 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.19 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.18 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.17 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.09 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.07 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.06 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.01 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.95 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.94 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.84 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.78 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.77 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.74 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.74 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.73 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.72 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.71 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.67 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.63 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 97.54 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.44 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.39 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.34 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.33 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.31 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.28 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.13 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.07 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.9 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.89 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.88 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.87 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.86 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.86 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.82 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 96.77 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 96.76 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.68 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.67 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.61 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.58 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.55 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.5 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 96.49 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 96.43 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.39 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.14 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.07 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.01 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 95.98 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 95.96 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.96 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.83 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.78 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.7 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.62 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.62 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 95.6 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.55 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.55 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 95.48 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.45 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.34 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.29 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.17 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 95.16 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.15 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.09 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.05 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.03 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 95.02 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.89 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.69 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 94.56 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 94.14 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 94.04 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 93.89 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 93.75 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.74 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 93.68 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 93.68 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.57 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 93.33 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 93.31 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 93.14 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 93.1 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 93.0 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.89 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 92.79 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 92.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.15 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 92.1 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 92.03 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 91.99 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.97 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.84 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 91.14 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 90.95 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 90.76 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 90.07 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 89.71 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 89.51 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 89.46 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 89.43 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 89.4 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 89.24 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.86 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 88.6 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 88.13 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 88.06 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 87.81 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 87.72 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 87.66 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 87.64 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 87.38 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 87.33 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 86.83 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 86.22 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 85.86 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 85.84 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 85.81 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 85.8 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 85.57 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 85.56 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 85.52 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 85.08 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 84.93 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.87 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 84.76 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 84.73 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 84.42 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 83.87 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 83.55 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 83.49 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 83.48 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 83.38 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 83.37 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 82.4 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 82.35 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 82.04 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 81.95 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 81.93 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 81.27 |
| >KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-141 Score=1218.54 Aligned_cols=618 Identities=55% Similarity=0.864 Sum_probs=536.4
Q ss_pred eEEEEECCeecCCCccHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEeCCCccccccCCCCCCCCCCCC
Q 000286 1045 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 1124 (1720)
Q Consensus 1045 ~l~f~~~~~~l~~~~Ti~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ti~y~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1720)
+|.|++.|+.+++++|+||||+|+....+++ ..++ +. .... |+.+|+|+|++-+.......+++.+...+..+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 4789999999999999999999998876643 1122 21 2233 99999999997654433333333221112222
Q ss_pred CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccCccccccccc
Q 000286 1125 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1203 (1720)
Q Consensus 1125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1203 (1720)
.+..... .+. ..+|..+.+...+. ..+..++.++++.|+|+ ....+|. .++++.
T Consensus 74 ~~~~~~n-~~~~~~~h~~~~~~~~~~-----~~e~~~~~~~~i~l~rv--~~~~~~~-----------------~l~d~~ 128 (621)
T KOG0170|consen 74 TKTSPTN-KKHDELSHDPSVSNPLLV-----PLENINPSLDVILLLRV--AIEGYWY-----------------YLDDLA 128 (621)
T ss_pred ccccCcC-CchhhccCChhhcccccc-----chhhcCchHHHHHHHhh--cccchhh-----------------hhhhhh
Confidence 2221111 111 22232222211111 23334577888888888 2333332 234444
Q ss_pred CCCCCCCchhhhcccchHHHHHHHhHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCC
Q 000286 1204 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1283 (1720)
Q Consensus 1204 ~~~~~~~~~~f~~~klt~kl~rql~~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~ 1283 (1720)
.....+|.++|+|+|||+|++||++||+++|+|.+|.||..|++.|||||||+||+.|||+|+||++|++++||+.++.+
T Consensus 129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~ 208 (621)
T KOG0170|consen 129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS 208 (621)
T ss_pred hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred CCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhccCCCceEEEEEcCccccCCcchHHHHHHHHHHHhccCCCCcc
Q 000286 1284 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1363 (1720)
Q Consensus 1284 ~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~~~~~~L~V~F~gE~G~g~GptrEFf~lvs~El~~~~l~lf~ 1363 (1720)
.+.+.++...++|||+|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++|||++++||||
T Consensus 209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR 288 (621)
T KOG0170|consen 209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR 288 (621)
T ss_pred CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence 76666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCccccc
Q 000286 1364 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443 (1720)
Q Consensus 1364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~ 1443 (1720)
++.-+ +.. +++ ..+..||..+.||||.||++..+.++ ..+++++|++||+||||||+|+|++|+|
T Consensus 289 ~~s~s----~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se---~~kvi~~F~~LG~~vAkal~D~Rildlp 353 (621)
T KOG0170|consen 289 CNSVS----YRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSE---NEKVIELFRLLGTFVAKALQDGRILDLP 353 (621)
T ss_pred cCcee----ecc-------CCC-CCCcchhhhccccCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHhcCceEeee
Confidence 97541 111 122 45678999999999999999766555 3689999999999999999999999999
Q ss_pred CCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccCCCCcee
Q 000286 1444 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1523 (1720)
Q Consensus 1444 fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~g~~~~e 1523 (1720)
|+++|||+++|++++..|+..|||+++++|.+|+..+.+|+.++...|+...+..++++.||.||||||+||+||+++||
T Consensus 354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie 433 (621)
T KOG0170|consen 354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE 433 (621)
T ss_pred ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred ccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheE
Q 000286 1524 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1601 (1720)
Q Consensus 1524 L~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~ 1601 (1720)
|+|||. +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||.+++|+.++|++|++
T Consensus 434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~ 513 (621)
T KOG0170|consen 434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK 513 (621)
T ss_pred eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000286 1602 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1681 (1720)
Q Consensus 1602 ~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~L 1681 (1720)
+|||||++||+|+.|++|+++|+.+|||.||||||||||||+|||++|+||||||||+.+. ++.+|++|
T Consensus 514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L 582 (621)
T KOG0170|consen 514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL 582 (621)
T ss_pred cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 58899999
Q ss_pred ceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1682 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1682 Psa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
|+||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus 583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999998
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-97 Score=894.28 Aligned_cols=743 Identities=47% Similarity=0.632 Sum_probs=593.3
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~ 88 (1720)
+.++++++|+++|+...||++|++|+.+||++|+|+|++.+..|+...+||.||.||++++|++||+.||||||||+++.
T Consensus 164 sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred cchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc
Confidence 33559999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
|+.+..||++++||+|++||+.|+|+||+||+|+||++||++|+.+|+++|+|.++|+|||||++++||.|+.+++|||.
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
+.+.+.|..+.+++|.|..+|++.|.++++.+|.|+++|+++|.|.+++++.++.+|+|.++++||... ++.++.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~Ls~ 398 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTILSN 398 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 677899
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCC-CCC
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQG-TIS 327 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~-~~s 327 (1720)
.+++.++++|..+|++++-....+++.||..+|..+|.++.+.++.+....+.+.++++++++.||.+|||+++.+ +|.
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~ 478 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFA 478 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceee
Confidence 9999999999999999999999999999999999999999998888888889999999999999999999999984 443
Q ss_pred CCcc---------cc--cccc---CCc------------ccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHH
Q 000286 328 LPSS---------SN--MFVK---GPV------------VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGM 381 (1720)
Q Consensus 328 ~~~~---------~~--~~~~---g~~------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~ 381 (1720)
+... +. |.++ |.. ++.+..+.++++. .+...++|+.+++++||++++|++
T Consensus 479 ~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~----dkl~~~~r~~~l~nqpel~q~F~~ 554 (1051)
T KOG0168|consen 479 VDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ----DKLNGSAREGLLKNQPELLQSFGK 554 (1051)
T ss_pred hhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh----hhcCCchhhhhhhcCHHHHHHHHH
Confidence 3110 11 1121 211 1111111121111 112237899999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchh
Q 000286 382 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGT 461 (1720)
Q Consensus 382 ~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~ 461 (1720)
.|||+||+||++++++.||||||+||+|||||+++++|++++++.+++||||+||+++|+.+|++|||++++||+|+||+
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~ 634 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT 634 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCC-CC
Q 000286 462 FSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSP-PS 540 (1720)
Q Consensus 462 f~~~f~REGV~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~~~s~~~~~~-~~ 540 (1720)
|.++|+||||||+|++|+...+.....+ ++++. ..++.....+.++++..+-+....++. +.+ ..
T Consensus 635 F~~~F~REGV~~~v~~L~~~~~~~~~~p-----dk~~n-~~gS~~s~~~~~~ss~~~~~~~~see~--------~~pslt 700 (1051)
T KOG0168|consen 635 FSPSFRREGVFHAVKQLSVDSNPIDANP-----DKANN-ENGSADSEEGDSSSSITECDEHQSEEL--------GYPSLT 700 (1051)
T ss_pred hhhhHhhhhHHHHHHHHhccCCccccCC-----CcccC-CCCccccCCCccccccccccccchhcc--------CCcccc
Confidence 9999999999999999998654332211 11111 111111122222222111111001111 111 11
Q ss_pred CcccCCCcch-------hhHHHHHHHHHHHHhhCCCCCCCcccchhhHHHHHHHHHHHHhhccccchhcccCCccccCCc
Q 000286 541 SVEIPTVNSN-------LRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSR 613 (1720)
Q Consensus 541 ~~~~p~~~~~-------~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 613 (1720)
+...|....+ +|..+..+||.|..+||++.. +.+.++.+..++++...+..+....+.+.+|+.
T Consensus 701 ~~~~~~s~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~~---~~~~~d~~~~~knl~s~~s~~l~~~np~~~gk~------ 771 (1051)
T KOG0168|consen 701 HSEQPDSVKPPKISDHLLRTRSPKRAKNFGPKYFPSRL---DQGVTDQLANLKNLHSILSSFLASLNPATWGKT------ 771 (1051)
T ss_pred cccCCCccCCchhHHHHHHhhhhhhhhccCCCCCCchh---hhhhhHhhhhhhhhcchhhhhhcccCCCCCCcc------
Confidence 1222222222 233344556677778888733 456788899999999888776655554444432
Q ss_pred ccccchhhHH--HHHHHHHHHHHhhcCCCccccccccccchHHHHHHhhccCcchh--hhhHHHHHHHHHHHHHHHHHHh
Q 000286 614 LADISATKEE--YLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKER--MSEANMLKLRQQALKRFKSFIA 689 (1720)
Q Consensus 614 ~~~~~~~~ee--~~~~~l~~l~~~l~~~~~iSsFEl~~SGlv~~Ll~~Ls~~~~~~--~~~~~~~~~~~~~~~~f~~f~~ 689 (1720)
++ .|.++|+.+.+.+.+++.||+|||.++|++++|.+|++++.+.+ ..+.......++.++.|+.|.+
T Consensus 772 --------e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~ 843 (1051)
T KOG0168|consen 772 --------EEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQE 843 (1051)
T ss_pred --------cccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 22 38899999999999999999999999999999999999887533 2222223344555555566666
Q ss_pred hccCCCCCCCCCChHHHHHHHHHHHhhcccccceEeccCCCCCCCCCCCCcccccccC-ceEEE-EeecCCCCCcCCCCC
Q 000286 690 VALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQ-PFKLR-LCRAQGDKSLRDYSS 767 (1720)
Q Consensus 690 ~~~~~~~~~~~~~pl~~LV~kLq~aLsr~E~FpV~~s~~~~~~~~~~~~~~~~s~L~k-qlKlr-L~~~~d~~~l~~~~~ 767 (1720)
++..-....+...+...++.|||++|+.+|+||++++|++..-++....++|...++. .+|+| +-.......+.+|.-
T Consensus 844 v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~~~~fl~~f~~~ple~~~~ 923 (1051)
T KOG0168|consen 844 VLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIRLRTFLHVFLRLPLEPMLQ 923 (1051)
T ss_pred HHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHHHHHHHHHHhcCCchhhcc
Confidence 5543322334556799999999999999999999999976544444456666555533 34433 111122345567777
Q ss_pred CeEEEccccCHHHHHHhhhhhhcc
Q 000286 768 NVVLIDPLASLAAVEEFLWPRVQR 791 (1720)
Q Consensus 768 ~~VsI~~iAt~~ale~yL~~Rv~~ 791 (1720)
..|.|.|++...+..+|.|+.+..
T Consensus 924 ~~~~v~~l~~~~~~a~~~~~~~cl 947 (1051)
T KOG0168|consen 924 PNVQVPPLTSSPAEADVEKENNCL 947 (1051)
T ss_pred ccccCCCccccchhhhhhcccCCc
Confidence 888888888888888888877764
|
|
| >COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=746.50 Aligned_cols=432 Identities=31% Similarity=0.446 Sum_probs=361.3
Q ss_pred hhhcccchHHHHHHHhHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCC-CC---
Q 000286 1213 EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHG-SV--- 1288 (1720)
Q Consensus 1213 ~f~~~klt~kl~rql~~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~-~~--- 1288 (1720)
.++......++.++.-+++.+++.+.+.|. ....|+++++++|...++...|...|...-+..... -+.. ..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~-~g~~~~~~~~ 487 (872)
T COG5021 412 STYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSR-LGSFISLNKL 487 (872)
T ss_pred hhhhchhhhhhhhhhccchhhhcccccccc---cccccccchHHHHhhhhheeeehhcccceeeecCCC-Cchhhhhchh
Confidence 455556677888889999999999999998 677999999999999999888776654332211110 0000 00
Q ss_pred -------cc-hhh-----hc--CccceeEEEEcCchHHHHHHHHHhhccC--CCceEEEEEcCccccCC-cchHHHHHHH
Q 000286 1289 -------NE-REI-----RV--GRLERQKVRVSRNRILDSAAKVMEMYSS--QKAVLEVEYFGEVGTGL-GPTLEFYTLL 1350 (1720)
Q Consensus 1289 -------~~-~~~-----~~--~rl~r~kv~V~R~~il~~a~~~l~~~~~--~~~~L~V~F~gE~G~g~-GptrEFf~lv 1350 (1720)
+. +.+ +. .--+..+++|+|+++++|++..+...+. .+..|+|+|.||+|+|+ |.|||||.++
T Consensus 488 ~~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lL 567 (872)
T COG5021 488 DIRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLL 567 (872)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHH
Confidence 00 000 00 1124678999999999999998876663 35679999999999998 7899999999
Q ss_pred HHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccce
Q 000286 1351 SRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVM 1430 (1720)
Q Consensus 1351 s~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~li 1430 (1720)
++++++|++++|..... +.| .++|+|.+.. + ++++++|+|+|++|
T Consensus 568 s~~~Fnp~y~LF~y~t~----------------------d~~-----~~~~n~~s~~-----n---pe~L~yf~fiGrvI 612 (872)
T COG5021 568 SKEMFNPDYGLFEYITE----------------------DLY-----TLPINPLSSI-----N---PEHLSYFKFLGRVI 612 (872)
T ss_pred hHHhcCCcccceeeecc----------------------ccc-----ccCcCccccC-----C---HHHHHHHHHHHHHH
Confidence 99999999999988754 122 3556665441 1 58999999999999
Q ss_pred eeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCccccc
Q 000286 1431 AKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1510 (1720)
Q Consensus 1431 g~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl 1510 (1720)
|+||+|++.||++|+.+|||+||+.+++++|++++||++|++|.||+++ +.+. ..+
T Consensus 613 GkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~-----------------------~~d~-~~l 668 (872)
T COG5021 613 GKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNN-----------------------DIDE-TIL 668 (872)
T ss_pred HHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcC-----------------------CCCc-cee
Confidence 9999999999999999999999999999999999999999999999884 1111 146
Q ss_pred ccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhh
Q 000286 1511 CLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHL 1583 (1720)
Q Consensus 1511 ~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~l 1583 (1720)
+++|++. | ...|||||||+ +||.+|+++||++|++|+|+++|++|++||..||++|||..+|.+|++.||+.|
T Consensus 669 ~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~L 748 (872)
T COG5021 669 DLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELL 748 (872)
T ss_pred eeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHH
Confidence 7777764 3 45799999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCC
Q 000286 1584 LCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTA 1663 (1720)
Q Consensus 1584 icG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~ 1663 (1720)
|||.++++|+++|+++|.| |||++++|+|.|||++|++|+.++|++|||||||++|+|++||+.|+|+.+|++.....+
T Consensus 749 I~G~~e~iDidd~K~~T~Y-~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~ 827 (872)
T COG5021 749 IGGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKG 827 (872)
T ss_pred HCCCCccccHHHHhhcccc-cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecC
Confidence 9999986699999999999 799999999999999999999999999999999999999999999999544444332221
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1664 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1664 ~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
..++++||+||||||+|+||+|+|||+||+||++||+||.| |+|+
T Consensus 828 -----------g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~G-Fg~~ 872 (872)
T COG5021 828 -----------GTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAG-FGLL 872 (872)
T ss_pred -----------CCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccC-cCcC
Confidence 23688999999999999999999999999999999999997 8874
|
|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-74 Score=698.78 Aligned_cols=418 Identities=33% Similarity=0.542 Sum_probs=352.2
Q ss_pred CCCCchhhhcccchHHHHHHHhHHHHHh-cCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCC
Q 000286 1207 VRVPYEEFINSKLTPKLARQIQDALALC-SGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGH 1285 (1720)
Q Consensus 1207 ~~~~~~~f~~~klt~kl~rql~~~l~~~-s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~ 1285 (1720)
..||.+.|++..|+.-++-+.+-..... ......|| +|||||+--+|..++|.++ ++++...+..+
T Consensus 419 ~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc-----~ypFIL~~~aK~~lL~yD~--------rlrM~~~~~~a 485 (850)
T KOG0941|consen 419 GLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFC-----NYPFILNAVAKIELLQYDA--------RLRMESERRKA 485 (850)
T ss_pred CCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceee-----cCCeecccHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 4689999999888888875444332221 22256777 8999999999999999764 23332211100
Q ss_pred CCCc-chhhhcCccceeEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCC
Q 000286 1286 GSVN-EREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAM 1361 (1720)
Q Consensus 1286 ~~~~-~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~l 1361 (1720)
.-.. ....+-..-++.+++|+|++|++||+++|+.+. +.+++|+|+|.||+|.|+ |+++|||.++.+|+++|++||
T Consensus 486 ~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~Gm 565 (850)
T KOG0941|consen 486 FLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGM 565 (850)
T ss_pred HHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccC
Confidence 0000 000000023689999999999999999999887 469999999999999999 689999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCccc
Q 000286 1362 WRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLD 1441 (1720)
Q Consensus 1362 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ld 1441 (1720)
|.+++. ..++ +|+. .+. ....+|+++|++||.|||++.++|
T Consensus 566 F~~~e~----------------------s~~~-----WF~~-~~~-----------~~~~~y~liGil~GLAIyN~~ild 606 (850)
T KOG0941|consen 566 FTYDEE----------------------SSLL-----WFNP-SPF-----------EEEKQYHLIGILCGLAIYNNTILD 606 (850)
T ss_pred eecccc----------------------ccee-----eecC-CCC-----------CccceeeehhHHHHHHHhccceec
Confidence 999865 2333 3421 111 123489999999999999999999
Q ss_pred ccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC---
Q 000286 1442 LPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP--- 1517 (1720)
Q Consensus 1442 l~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-l~L~Ft~~--- 1517 (1720)
+|||.+|||+|++.+++++||.++.|.++++|+.|+++ .|+++|| ++|+|++.
T Consensus 607 lpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y-----------------------~gdd~ed~f~l~F~i~~~~ 663 (850)
T KOG0941|consen 607 LPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDY-----------------------EGDDVEDVFDLTFQISQDD 663 (850)
T ss_pred CCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhc-----------------------cccchhhheeeEEEEEehh
Confidence 99999999999999999999999999999999999985 3334544 88999876
Q ss_pred -C-CCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCH
Q 000286 1518 -G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEP 1593 (1720)
Q Consensus 1518 -g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~ 1593 (1720)
| ..+++|+|||. +||.+|++|||++|++|.++..|++|++||++||++|+....+.+|.|+||+.++||+++ +||
T Consensus 664 ~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw 742 (850)
T KOG0941|consen 664 NGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSED-YDW 742 (850)
T ss_pred cCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCH
Confidence 2 24789999999 999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred HHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC
Q 000286 1594 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP 1673 (1720)
Q Consensus 1594 e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~ 1673 (1720)
+.|++.++|++||+.+||+|+|||++++.|+.++|++||+|+||++|+|++|++.| +++|.+..+
T Consensus 743 ~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l--~~~i~~~~~------------- 807 (850)
T KOG0941|consen 743 KALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL--KLVIQKNGP------------- 807 (850)
T ss_pred HHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc--eEEEecCCC-------------
Confidence 99999999999999999999999999999999999999999999999999999998 788876432
Q ss_pred CCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccC
Q 000286 1674 SESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1719 (1720)
Q Consensus 1674 ~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~L 1719 (1720)
..++||+||||||.|.||+|||+|.|++||++||++..| |.|
T Consensus 808 ---~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~G-F~l 849 (850)
T KOG0941|consen 808 ---DEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEG-FGL 849 (850)
T ss_pred ---CcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccC-cCC
Confidence 368999999999999999999999999999999999999 876
|
|
| >cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=682.58 Aligned_cols=341 Identities=45% Similarity=0.738 Sum_probs=313.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccC
Q 000286 1301 QKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDG 1377 (1720)
Q Consensus 1301 ~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~ 1377 (1720)
.+++|+|++|++++++++..+. ..+.+|+|+|.||.|+|. ||+||||+++++|+++++++||+.++++
T Consensus 1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~--------- 71 (352)
T cd00078 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD--------- 71 (352)
T ss_pred CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC---------
Confidence 3699999999999999998876 467899999999999995 8999999999999999999999987540
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC
Q 000286 1378 DEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL 1457 (1720)
Q Consensus 1378 ~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~ 1457 (1720)
..+++|+|..... ..++++|+++|++||+||+++.+++++||++|||+|+|.++
T Consensus 72 ------------------~~~~~~~p~~~~~--------~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~ 125 (352)
T cd00078 72 ------------------SGLLYPNPSSFAD--------EDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPL 125 (352)
T ss_pred ------------------CceEEeCCCcccc--------hhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCC
Confidence 1367888776531 35789999999999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCccccccccccc------CCCCceeccCCCc--
Q 000286 1458 DLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTL------PGYPDYILKPGDE-- 1529 (1720)
Q Consensus 1458 tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~------~g~~~~eL~pgG~-- 1529 (1720)
+++||+++||+++++|++|+++ +. .+++++|+|++ .+..++||+|||+
T Consensus 126 t~~Dl~~iD~~~~~sl~~l~~~-----------------------~~-~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~ 181 (352)
T cd00078 126 SLEDLEELDPELYKSLKELLDN-----------------------DG-DEDDLELTFTIELDSSFGGAVTVELKPGGRDI 181 (352)
T ss_pred CHHHHHHhCHHHHHHHHHHHhc-----------------------CC-chhhhcceeEEEEeecCCCcceEecCCCCCCC
Confidence 9999999999999999999874 00 15678888885 3567899999999
Q ss_pred ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCC
Q 000286 1530 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAK 1609 (1720)
Q Consensus 1530 ~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~ 1609 (1720)
+||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+
T Consensus 182 ~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~-id~~~l~~~~~y~~~~~~~ 260 (352)
T cd00078 182 PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLEDLKKNTEYKGGYSSD 260 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCC-CCHHHHHhceEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999965 7999999999999999999
Q ss_pred ChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccC
Q 000286 1610 SPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCAN 1689 (1720)
Q Consensus 1610 s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n 1689 (1720)
++.|+|||+||++||++||++||+|+||++|+|++||++++|+|+|+++.. ++++||+||||||
T Consensus 261 ~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~----------------~~~~LP~a~TCf~ 324 (352)
T cd00078 261 SPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS----------------PDDRLPTAHTCFN 324 (352)
T ss_pred CHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC----------------CCCCCCcchhhhc
Confidence 999999999999999999999999999999999999999999999997642 4799999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCcccc
Q 000286 1690 YLKLPPYSTKEIMYKKLVYAISEGQGSFD 1718 (1720)
Q Consensus 1690 ~LkLP~YsS~eilreKL~~AI~eg~g~F~ 1718 (1720)
+|+||+|+|+|+||+||++||++|+| ||
T Consensus 325 ~L~LP~Yss~e~l~~kL~~AI~~~~g-F~ 352 (352)
T cd00078 325 LLKLPPYSSKEILREKLLYAINEGAG-FG 352 (352)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC-CC
Confidence 99999999999999999999999996 96
|
It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. |
| >KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-73 Score=690.39 Aligned_cols=386 Identities=33% Similarity=0.553 Sum_probs=342.4
Q ss_pred HhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhcc-
Q 000286 1244 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1322 (1720)
Q Consensus 1244 ~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~- 1322 (1720)
.+++++||+.||+.|+.+||. .|..=++..+.++ . .|+.....++|||++|++||+..|...+
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~-------lla~dKq~~~~~~-------~--F~~g~s~~~tIRRd~iyeDAfd~f~p~~e 662 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR-------LLALDKQRHGGDG-------P--FGMGFSPSATIRRDHIYEDAFDAFSPKGE 662 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH-------HHHHHHHhhcCCC-------C--ccCCCCccEEEehhhhHHHHHHhcCccCC
Confidence 478899999999999999984 3322222222111 1 2233335799999999999999998776
Q ss_pred -CCCceEEEEEcCc-----cccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcccc
Q 000286 1323 -SQKAVLEVEYFGE-----VGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHA 1395 (1720)
Q Consensus 1323 -~~~~~L~V~F~gE-----~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~ 1395 (1720)
+.|+.+.|+|.+| .|+|. |.+|||.+.++++-+++++|+|+.+..
T Consensus 663 ~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~---------------------------- 714 (1001)
T KOG0942|consen 663 PDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED---------------------------- 714 (1001)
T ss_pred cccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc----------------------------
Confidence 3578899999875 45555 789999999999999999999998854
Q ss_pred CCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC--CcccccccCHHHHHHH
Q 000286 1396 PLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGKIL 1473 (1720)
Q Consensus 1396 ~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~--tl~DL~~vDp~l~~sL 1473 (1720)
+-|||+|-.+..- + ...+++|+|||+++|||||.|.++|+||+.+|.++++|..- +++||.++||++|+.|
T Consensus 715 -~lLYPNp~~~~l~--~----~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nL 787 (1001)
T KOG0942|consen 715 -HLLYPNPTAAMLL--D----VDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNL 787 (1001)
T ss_pred -ceecCCCCchhhh--h----hHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHH
Confidence 2489998776421 1 24799999999999999999999999999999999999865 9999999999999999
Q ss_pred HHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHHHH
Q 000286 1474 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDA 1546 (1720)
Q Consensus 1474 ~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~ 1546 (1720)
..|+++ +|+++++|.|+||+- | ...+||+|||+ +||.+|+.+||++|++|
T Consensus 788 ifLk~y-----------------------~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY 844 (1001)
T KOG0942|consen 788 IFLKNY-----------------------NGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNY 844 (1001)
T ss_pred HHHHhc-----------------------CCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhh
Confidence 999886 566899999999985 3 35799999999 99999999999999999
Q ss_pred HHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHH
Q 000286 1547 TVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1626 (1720)
Q Consensus 1547 ~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~e 1626 (1720)
+|+..|++|+.|||+||..|||++||.||++.||+.||+|.++.+|+++|+++|+|-+||+++||+|.+|||||++|+.|
T Consensus 845 ~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 845 KLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHH
Q 000286 1627 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1706 (1720)
Q Consensus 1627 err~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL 1706 (1720)
+||+||+|||||+|.|+.|||+|.|+|+|...+ .++++||+|.||.|.||||+|++++.||+||
T Consensus 925 dKr~fLKFVTscsRpPllGFK~L~P~FcI~n~g----------------sd~~RLPTASTCmNLLKLP~y~~kt~LreKL 988 (1001)
T KOG0942|consen 925 DKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAG----------------SDDDRLPTASTCMNLLKLPPYSNKTLLREKL 988 (1001)
T ss_pred HHHHHHHHHhcCCCcccccchhcCccceeeeCC----------------CccccCCcHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998643 2689999999999999999999999999999
Q ss_pred HHHHHcCCccccCC
Q 000286 1707 VYAISEGQGSFDLS 1720 (1720)
Q Consensus 1707 ~~AI~eg~g~F~LS 1720 (1720)
+|||+.|.| |+||
T Consensus 989 lYAI~sgAG-FeLS 1001 (1001)
T KOG0942|consen 989 LYAINSGAG-FELS 1001 (1001)
T ss_pred HHHHhcccC-CCCC
Confidence 999999999 9998
|
|
| >smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-71 Score=661.65 Aligned_cols=320 Identities=43% Similarity=0.694 Sum_probs=290.7
Q ss_pred CCce-EEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCC
Q 000286 1324 QKAV-LEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1401 (1720)
Q Consensus 1324 ~~~~-L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP 1401 (1720)
.+++ |+|+|.||.|+|. ||+||||+++++|+++++++||+.+++ ..++||
T Consensus 7 ~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~----------------------------~~~~~~ 58 (336)
T smart00119 7 LKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPN----------------------------DYLLYP 58 (336)
T ss_pred hCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCC----------------------------CCeEEe
Confidence 3445 9999999999876 899999999999999999999997754 126888
Q ss_pred CCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHh
Q 000286 1402 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1481 (1720)
Q Consensus 1402 ~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~ 1481 (1720)
+|..... ...++++|+++|++||+||+++.++|++||++|||+|+|.+++++||+++||+++++|++|+..
T Consensus 59 ~p~~~~~-------~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~-- 129 (336)
T smart00119 59 NPRAFFA-------NPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLN-- 129 (336)
T ss_pred CCCcccc-------chHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHh--
Confidence 8765421 0357899999999999999999999999999999999999999999999999999999999521
Q ss_pred hhhhhhccccCcccchhcccccCCcccccccccc------cCCCCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHH
Q 000286 1482 RKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT------LPGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIM 1553 (1720)
Q Consensus 1482 ~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft------~~g~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~ 1553 (1720)
++..++++|+|+ .++..++||+|||+ +||.+|+++||+++++|++..+++
T Consensus 130 ----------------------~~~~~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~ 187 (336)
T smart00119 130 ----------------------NDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIE 187 (336)
T ss_pred ----------------------CCCcccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHH
Confidence 011234678887 34567899999999 999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhh
Q 000286 1554 RQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQ 1633 (1720)
Q Consensus 1554 ~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLq 1633 (1720)
.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+++.|+|||+||++||++||++||+
T Consensus 188 ~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~ 266 (336)
T smart00119 188 KQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQ 266 (336)
T ss_pred HHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhhe
Confidence 999999999999999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcC
Q 000286 1634 FVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1713 (1720)
Q Consensus 1634 FvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg 1713 (1720)
|+||++|+|+|||+.++|+|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||++|
T Consensus 267 F~TG~~rlP~~G~~~l~~~~~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~ 330 (336)
T smart00119 267 FVTGSSRLPVGGFAALSPKFTIRKAGS----------------DDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEG 330 (336)
T ss_pred eccCCCCCCCCchhhcCCceEEEECCC----------------CCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999997642 4799999999999999999999999999999999999
Q ss_pred CccccCC
Q 000286 1714 QGSFDLS 1720 (1720)
Q Consensus 1714 ~g~F~LS 1720 (1720)
+| |+||
T Consensus 331 ~g-F~l~ 336 (336)
T smart00119 331 KG-FGLS 336 (336)
T ss_pred CC-CCCC
Confidence 87 9997
|
E3 ubiquitin-protein ligases. Can bind to E2 enzymes. |
| >KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=605.54 Aligned_cols=397 Identities=28% Similarity=0.497 Sum_probs=340.7
Q ss_pred hhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhc---cCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhc
Q 000286 1245 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQ---GADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY 1321 (1720)
Q Consensus 1245 l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~---~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~ 1321 (1720)
|++..|.+||+|.|+++|+. ..|... +.-+.... .|+. ...+.|+|++|+||.+++++..
T Consensus 670 ll~~mpHviP~edRv~lFR~----------fVqkdKa~~~lv~ts~a------~p~~-~t~IvvrR~rivEDGf~qL~~l 732 (1096)
T KOG4427|consen 670 LLTKMPHVIPHEDRVLLFRE----------FVQKDKASRGLVETSDA------SPAR-STEIVVRRGRIVEDGFQQLNSL 732 (1096)
T ss_pred EeccCCcccChHHHHHHHHH----------HHhhhHHhhcccccccC------Cccc-eeEEEEEcccchhhHHHHHHhc
Confidence 45578999999999999984 223222 11111111 1111 2568999999999999999988
Q ss_pred cC--CCceEEEEEcCccc-----cCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcc
Q 000286 1322 SS--QKAVLEVEYFGEVG-----TGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLV 1393 (1720)
Q Consensus 1322 ~~--~~~~L~V~F~gE~G-----~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv 1393 (1720)
+. .|+.+.|.|.+|.| +|. |+.+||...+.+..++|.++||..++. +
T Consensus 733 ~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~-d------------------------ 787 (1096)
T KOG4427|consen 733 GSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST-D------------------------ 787 (1096)
T ss_pred cchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC-C------------------------
Confidence 75 69999999998664 566 899999999999999999999987753 0
Q ss_pred ccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC--CcccccccCHHHHH
Q 000286 1394 HAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGK 1471 (1720)
Q Consensus 1394 ~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~--tl~DL~~vDp~l~~ 1471 (1720)
.-|||.|.+.. .+.++++|+|+||++|||+|.|.++|+||+++|...++|..- .++.|..+||++|+
T Consensus 788 ---~~LyPSPts~~--------~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYr 856 (1096)
T KOG4427|consen 788 ---RRLYPSPTSYH--------HENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYR 856 (1096)
T ss_pred ---ceecCCchhhh--------hhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHh
Confidence 14899987764 257899999999999999999999999999999999999865 78999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHH
Q 000286 1472 ILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVV 1544 (1720)
Q Consensus 1472 sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~ 1544 (1720)
+|..++.+ +| ++.||||+|++. | ...+||+|||+ .||++|+-.||..++
T Consensus 857 nLtfvKhY-----------------------dg-d~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA 912 (1096)
T KOG4427|consen 857 NLTFVKHY-----------------------DG-DLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMA 912 (1096)
T ss_pred hhhHHHhh-----------------------cc-cHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHH
Confidence 99999875 33 688999999986 3 35789999999 999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhc-C
Q 000286 1545 DATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGE-F 1623 (1720)
Q Consensus 1545 ~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~-~ 1623 (1720)
+|+++..+++|..||-+||.+++...||++|+|.||+.||.|...++|+++|++|++|.+||+.+|++|+|||+||.. |
T Consensus 913 ~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dF 992 (1096)
T KOG4427|consen 913 HFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDF 992 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999888889999999999999999999999999999985 9
Q ss_pred CHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC---------CCCCCCCCceeecccCccccC
Q 000286 1624 TPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP---------SESADDDLPSVMTCANYLKLP 1694 (1720)
Q Consensus 1624 s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~---------~~~~d~~LPsa~TC~n~LkLP 1694 (1720)
++|||+.||+|||.|+|.|+-||+.|.|+|.|.+..-+.+ ...+...|. ...+-.+||+|+||||.||||
T Consensus 993 t~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdD-qd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLP 1071 (1096)
T KOG4427|consen 993 TPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDD-QDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLP 1071 (1096)
T ss_pred ChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCc-ccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCC
Confidence 9999999999999999999999999999999885432221 112222221 134778999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1695 PYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1695 ~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
.|+-|..|||||+|||..+.| |+||
T Consensus 1072 nY~kkStlreKLrYAIssntG-FELS 1096 (1096)
T KOG4427|consen 1072 NYKKKSTLREKLRYAISSNTG-FELS 1096 (1096)
T ss_pred CcchhHHHHHHHHHHhhcCCC-cccC
Confidence 999999999999999999999 9998
|
|
| >KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=612.05 Aligned_cols=381 Identities=32% Similarity=0.532 Sum_probs=331.6
Q ss_pred HHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCc
Q 000286 1229 DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRN 1308 (1720)
Q Consensus 1229 ~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~ 1308 (1720)
+|-+++.| ..+...+|-+..|+.++.||+. .+.+.... -....|.|+|+
T Consensus 323 ~~~~L~~~------f~ll~~~~~ll~F~~Kr~yf~r-------~L~~~~~~------------------~~~~~v~v~R~ 371 (720)
T KOG0939|consen 323 NPNILAAG------FSLLLKNPMLLDFDNKRKYFKR-------ELRKEHAS------------------SEKLAVLVRRA 371 (720)
T ss_pred Cchhhhcc------hhhheecCcceecccHHHHHHH-------HHHHhhcc------------------CCcceEEEeHH
Confidence 45556665 4577889999999999999984 22222111 01345899999
Q ss_pred hHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCC
Q 000286 1309 RILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385 (1720)
Q Consensus 1309 ~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~ 1385 (1720)
.+|++.++.+.... ..+..|+|.|.||+|.|+ |++||||.++++|+++|++.||..... +..
T Consensus 372 ~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~-d~t-------------- 436 (720)
T KOG0939|consen 372 LVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGS-DQT-------------- 436 (720)
T ss_pred HHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCC-Cce--------------
Confidence 99999998876554 457799999999999999 599999999999999999999987754 100
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCccccccc
Q 000286 1386 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPF 1465 (1720)
Q Consensus 1386 ~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~v 1465 (1720)
.+.|+|.+.. ...++.+|+|.||++||||+||+.++..|.+.|||+++|.++++.|++..
T Consensus 437 ------------t~~pn~~s~~--------np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 437 ------------TFHPNPNSYV--------NPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred ------------EEeeCCcccC--------ChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 2345554321 14799999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC----C-CCceeccCCCc--ccCcccHH
Q 000286 1466 DAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLE 1537 (1720)
Q Consensus 1466 Dp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-l~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~ 1537 (1720)
||++|++|.||++. ++.+ |.++|... | ...+||+|||+ .||.+|+.
T Consensus 497 DP~y~k~l~~il~n--------------------------dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~ 550 (720)
T KOG0939|consen 497 DPEYYKSLVWILKN--------------------------DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQ 550 (720)
T ss_pred ChHHhhceeehhcC--------------------------CcccceeEEEEEeeccccccceeecccCCCceeeccccHH
Confidence 99999999999762 2222 56666654 3 46899999999 99999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHH
Q 000286 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1617 (1720)
Q Consensus 1538 eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fw 1617 (1720)
+||+++++++|..+|++|++||.+||++++|...+++|++.||+.|+||.+++ |+++|+.+++| +||+..+++|+|||
T Consensus 551 ~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpei-dvdd~k~nt~y-~~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 551 EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEI-DVDDLKANTEY-LGYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcc-cHHHHHhhhhh-hcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 99999999999 79999999999999
Q ss_pred HHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccc
Q 000286 1618 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLK 1692 (1720)
Q Consensus 1618 evl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~Lk 1692 (1720)
++|.+|+++||.+|||||||++++|++||+.|.+ +|+|.+.+. ..++||++|||||+|+
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~----------------s~d~LP~ahTCfnqL~ 692 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPG----------------STDRLPTAHTCFNQLF 692 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCC----------------CCCCCcchhhhhhhhc
Confidence 9999999999999999999999999999999998 899987542 3589999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCccccC
Q 000286 1693 LPPYSTKEIMYKKLVYAISEGQGSFDL 1719 (1720)
Q Consensus 1693 LP~YsS~eilreKL~~AI~eg~g~F~L 1719 (1720)
||.|.|+|.++++|+.||+||..+|++
T Consensus 693 LP~Y~Sye~l~~~LllAi~E~segfg~ 719 (720)
T KOG0939|consen 693 LPHYASYEQLRESLLLAINEGSEGFGM 719 (720)
T ss_pred CcchhhHHHHHHHHHHHHHhhhhccCc
Confidence 999999999999999999999988986
|
|
| >PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=564.35 Aligned_cols=307 Identities=40% Similarity=0.699 Sum_probs=247.1
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCC-CCCCCccCCChhhHHHHHHHc
Q 000286 1348 TLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWP-PSADASEGGQFSKVIEYFRLL 1426 (1720)
Q Consensus 1348 ~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~-~~~~~~~~~~~~~~l~~F~~l 1426 (1720)
++|++|+++|+++||..+++ ..+ ++|+|.. ....... .....+++|+++
T Consensus 1 ~l~~~el~~~~~~lF~~~~~----------------------~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~l 50 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSN----------------------NGL------FWPNPNSNRDSPSPA--SSEEHLKMFRFL 50 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTT----------------------TCE------EEEECCH----TTGG--GSTTHHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCC----------------------CCE------EeCCCcccccccccc--cCHHHHHHHHHH
Confidence 58999999999999966544 111 2233221 0000000 013678999999
Q ss_pred ccceeeheecCCcccccCCHHHHHHHh-CCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCC
Q 000286 1427 GRVMAKALQDGRLLDLPFSTAFYKLVL-GHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGA 1505 (1720)
Q Consensus 1427 G~lig~Al~d~~~ldl~fs~~f~k~ll-g~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~ 1505 (1720)
|++||+||+++.+++++|+++|||+|+ |.+++++||+++||+++++|++|+++.. +..
T Consensus 51 G~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~---------------------~~~ 109 (317)
T PF00632_consen 51 GRLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDN---------------------DEE 109 (317)
T ss_dssp HHHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHS---------------------GSC
T ss_pred HHHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccc---------------------ccc
Confidence 999999999999999999999999999 9999999999999999999999987411 122
Q ss_pred cccccccccccCCC------CceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCH
Q 000286 1506 PIEDLCLDFTLPGY------PDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTP 1577 (1720)
Q Consensus 1506 ~iedl~L~Ft~~g~------~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~ 1577 (1720)
.+++++++|+++.. .+++|++||. .||.+|+++||++++++++.++++.|+++||+||.+|+|...+++|+|
T Consensus 110 ~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~ 189 (317)
T PF00632_consen 110 DVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSP 189 (317)
T ss_dssp TTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSH
T ss_pred ceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCH
Confidence 46789999998732 3689999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEe
Q 000286 1578 HELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1657 (1720)
Q Consensus 1578 ~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~ 1657 (1720)
+||+.++||.++.||+++|+++++|++||+.+++.|+|||+||++|+++||++||+|+||++|+|+|||+.|+|+|+|++
T Consensus 190 ~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~ 269 (317)
T PF00632_consen 190 EELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQF 269 (317)
T ss_dssp HHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEE
T ss_pred HHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEee
Confidence 99999999998757999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1658 KHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1658 k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
.... ++++||+||||||+|+||.|+|+|+||+||++||++|+++|+||
T Consensus 270 ~~~~---------------~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 270 SDDS---------------PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGLS 317 (317)
T ss_dssp ESC----------------STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT-------
T ss_pred cCCC---------------ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCcC
Confidence 7632 36899999999999999999999999999999999996669998
|
Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-50 Score=443.30 Aligned_cols=387 Identities=22% Similarity=0.302 Sum_probs=346.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.+++|.+.|.++ |-+.|+.|+..+|++|+.++.++++.++..|+||++|++|......-+|++|+|+||||++++..+
T Consensus 71 ~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 71 SELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 4789999999998 999999999999999999999999999999999999999965445678999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCC--hHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFS--TGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~--~~vqr~Al~aLsNl 166 (1720)
++.||++||||.|+ .||.+...+++||++|||+||++|++. .|+++|+|.++|.+|.... +++.|++.|+++|+
T Consensus 150 TkvVvd~~AVPlfi-qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFI-QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHH-HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 99999999999999 999999999999999999999999885 6999999999999998654 58999999999999
Q ss_pred cc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
|| +.|+++...+..++|+|.+|+...|++|+.+||||++||+++ ..+.++.+++.|+.++|+++|.+.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg---~~E~i~avld~g~~~RLvElLs~~-------- 297 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHE-------- 297 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC---cHHHHHHHHhcCCcHHHHHHhcCc--------
Confidence 99 568899999999999999999999999999999999999998 999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..+++++||.++||++|++.+++.+|++|+++.+..||.+.+ +++||+++||.+|+.+|+|+||+ ++|+|||
T Consensus 298 -sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid--~nliPpL 374 (526)
T COG5064 298 -SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID--ANLIPPL 374 (526)
T ss_pred -cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--cccchHH
Confidence 5668999999999999999999999999999999999998876 48999999999999999999999 6666654
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~ 401 (1720)
++.. ++.++-+|+
T Consensus 375 ------------------------------------------------------------------i~ll-s~ae~k~kK 387 (526)
T COG5064 375 ------------------------------------------------------------------IHLL-SSAEYKIKK 387 (526)
T ss_pred ------------------------------------------------------------------HHHH-HHHHHHHHH
Confidence 3333 446888999
Q ss_pred HHHHHHHHHhhcCC--HHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHH----------hhCchhhhhhHHhh
Q 000286 402 KCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM----------EKLPGTFSKMFVRE 469 (1720)
Q Consensus 402 ~~L~~l~r~v~~~~--~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll----------~K~pd~f~~~f~RE 469 (1720)
++.|||.+..+.+. |+.++-++.+..|. -|..+|.-.|+.++-.+|..++.++ -|.+.+|..+.++-
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~Ik-pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A 466 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIK-PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchh-HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence 99999999988764 56777666664333 3345566688888888899888887 35678999999999
Q ss_pred cHHHHHHHHHhcC
Q 000286 470 GVVHAVDQLILAG 482 (1720)
Q Consensus 470 GV~~~I~~L~~~~ 482 (1720)
|.++.|..|....
T Consensus 467 ggmd~I~~~Q~s~ 479 (526)
T COG5064 467 GGMDAIHGLQDSV 479 (526)
T ss_pred ccHHHHHHhhhcc
Confidence 9999999997653
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=467.32 Aligned_cols=388 Identities=26% Similarity=0.365 Sum_probs=355.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.....++..+.++ |+..|+.|+..+|++++...++++..++..|+||.||++|...+++.+|++||||||||+++++++
T Consensus 66 ~~~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 66 SNLELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hhhHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 3478889999998 999999999999999999999999888888999999999997778999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccC-ChHHHHHHHHHHHHhc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-STGVQRVALSTAANMC 167 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc 167 (1720)
++.||++||||.|+ +|+.++..+++|||+|||+||+++++. .|+.+|++.+|+.++... ...+.|+++|+|+|+|
T Consensus 145 T~~vv~agavp~fi-~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFI-QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred ccccccCCchHHHH-HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999886 699999999999999865 4599999999999999
Q ss_pred cCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCC
Q 000286 168 KKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 168 ~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~l 246 (1720)
++. |.+.+..+..++|.|..+|++.|.+|+.+|||+|+||+++ .++.++++++.|++++|+.||.+.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~--------- 291 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHS--------- 291 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCC---------
Confidence 965 9999999999999999999999999999999999999997 999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC-----cccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG-----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~-----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..++.+|||+++||++|++.+|+.+|++|+++.|..+|+.+. ++++|+++||.+|+.+||++|++
T Consensus 292 ~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid--------- 362 (514)
T KOG0166|consen 292 SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID--------- 362 (514)
T ss_pred CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH---------
Confidence 4568899999999999999999999999999999999999543 36899999999999999999999
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~ 401 (1720)
..++|.|+.+++++ ++.+|+
T Consensus 363 -----------------------------------------------------------a~l~p~Li~~l~~~-ef~~rK 382 (514)
T KOG0166|consen 363 -----------------------------------------------------------ANLIPVLINLLQTA-EFDIRK 382 (514)
T ss_pred -----------------------------------------------------------cccHHHHHHHHhcc-chHHHH
Confidence 25688888899887 599999
Q ss_pred HHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHH---hhCc----hhhhhhHHhhcHHHH
Q 000286 402 KCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM---EKLP----GTFSKMFVREGVVHA 474 (1720)
Q Consensus 402 ~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll---~K~p----d~f~~~f~REGV~~~ 474 (1720)
++.|+|.++..-.+++++.-+++.. +-..+-.+|...|..++..+|...+.|+ ++.. ..|....+..|-.++
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9999999999999999999888877 4445555668899888888888888887 3443 678888999999999
Q ss_pred HHHHHhcCC
Q 000286 475 VDQLILAGN 483 (1720)
Q Consensus 475 I~~L~~~~~ 483 (1720)
|+.|..+++
T Consensus 462 iE~LQ~hen 470 (514)
T KOG0166|consen 462 IENLQSHEN 470 (514)
T ss_pred HHHhhcccc
Confidence 999998754
|
|
| >KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=378.45 Aligned_cols=329 Identities=28% Similarity=0.433 Sum_probs=286.9
Q ss_pred ceeEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccc
Q 000286 1299 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1375 (1720)
+..+++|+|+++||++++.+...+ +.+..+-+.|.+|+|.+. |+-||||.++++|.+.|.+++|..... + .+
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~-~-~t--- 89 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK-D-YT--- 89 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeeeeccc-c-cc---
Confidence 467899999999999987654433 468889999999999776 789999999999999999999987754 1 12
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCC
Q 000286 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1720)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~ 1455 (1720)
+..+|.... ...++.+|+|+|+++|+|+++++.++-- -.+|||.|+++
T Consensus 90 -----------------------lq~~P~sg~--------~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~k 137 (358)
T KOG0940|consen 90 -----------------------LWLNPRSGV--------NPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKK 137 (358)
T ss_pred -----------------------cccCCccCC--------CCCcccccccccccccccceeeEecCCC-ceehhhhhhcC
Confidence 222333220 1357899999999999999999999987 99999999999
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc-
Q 000286 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE- 1529 (1720)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~- 1529 (1720)
+++++|.+.+|+++++++.+++.. ++.. |++|.++ | ....+|+|+|.
T Consensus 138 tt~ldd~e~~d~e~~~s~~~~~en--------------------------~~~~-~~~f~~~~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 138 TTTLDDREAVDPEFYNSLTWIREN--------------------------DPTN-DLTFSVESEVLGQITTQELKPNGAN 190 (358)
T ss_pred ccccCchhhcCccccccccccccC--------------------------Cccc-chhhhcchhhcCCccceeecCCCcc
Confidence 999999999999999999988652 1112 6777765 3 35789999999
Q ss_pred -ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCC
Q 000286 1530 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1608 (1720)
Q Consensus 1530 -~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~ 1608 (1720)
.||.+|+++||.++++ ++..++..|..+|..||..+.|...+++|.+.|++.++||..++ ++++|+.++.|. ||..
T Consensus 191 ~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~-~~~d~~~~t~~~-~~~~ 267 (358)
T KOG0940|consen 191 IQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEI-DVNDWKQNTEYR-GYSE 267 (358)
T ss_pred cccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCccc-chhHHhhhcccc-cccC
Confidence 9999999999999999 88899999999999999999999999999999999999999986 999999999997 8999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCce
Q 000286 1609 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1683 (1720)
Q Consensus 1609 ~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1683 (1720)
++++|.|||+++.+|+.++|.+.++|+||++++|.+||+.|.- +++|-.. ...+.||.
T Consensus 268 ~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~-----------------~~~~~~p~ 330 (358)
T KOG0940|consen 268 TDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKW-----------------GKSTQLPR 330 (358)
T ss_pred CccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCc-----------------ccccccch
Confidence 9999999999999999999999999999999999999998864 5666541 15689999
Q ss_pred eecccCccccCCCCCHHHHHHHHHHHHH
Q 000286 1684 VMTCANYLKLPPYSTKEIMYKKLVYAIS 1711 (1720)
Q Consensus 1684 a~TC~n~LkLP~YsS~eilreKL~~AI~ 1711 (1720)
+|||||.|.||.|.+++.|++||..||+
T Consensus 331 ~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 331 SHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred hcccccccccccccchhHHHHHHHHhcC
Confidence 9999999999999999999999999984
|
|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=376.77 Aligned_cols=265 Identities=25% Similarity=0.377 Sum_probs=219.0
Q ss_pred hhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 000286 1417 SKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEE 1496 (1720)
Q Consensus 1417 ~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~ 1496 (1720)
+..+..|+-+||++|.||..|-+.|+.|++.+||+|||.++.|.|+..+||.++.+|+.|..... ..+.+
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhp---------sSd~D- 2808 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHP---------SSDAD- 2808 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCC---------ccccc-
Confidence 46789999999999999999999999999999999999999999999999999999999876411 01000
Q ss_pred hhcccccCCccccccccccc-----CCCCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhccccccc
Q 000286 1497 VVDLRFRGAPIEDLCLDFTL-----PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDI 1569 (1720)
Q Consensus 1497 ~~~l~~~~~~iedl~L~Ft~-----~g~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~ 1569 (1720)
..+..+.+.|.. .|...++|+|||. +||.+|+-|||.+|++++|.......++|+|+|+.+|+|.
T Consensus 2809 --------adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPe 2880 (3015)
T KOG0943|consen 2809 --------ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPE 2880 (3015)
T ss_pred --------chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcch
Confidence 011122222222 2566899999998 9999999999999999999987778899999999999999
Q ss_pred ccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCC----hHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCC
Q 000286 1570 TSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS----PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 1645 (1720)
Q Consensus 1570 ~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s----~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gG 1645 (1720)
..|.-++++++..+|||.++. ++..|.++|-|...--.+. +.-+|||+|++.|+..||+.++.||||||.||..|
T Consensus 2881 nmL~~LT~EDfRLiicG~eeV-niqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~ 2959 (3015)
T KOG0943|consen 2881 NMLEDLTAEDFRLIICGCEEV-NIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE 2959 (3015)
T ss_pred hhhcccCHhHheeeeecccce-ehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc
Confidence 999999999999999999986 9999999875532211111 36689999999999999999999999999999886
Q ss_pred CccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccc
Q 000286 1646 LAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1717 (1720)
Q Consensus 1646 f~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F 1717 (1720)
- .+.|.-.|...++ .|.+||+|+||..+|+.|-||||.+||+||+.||+-..-||
T Consensus 2960 e-~~p~~aSimiRP~----------------dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKNFGF 3014 (3015)
T KOG0943|consen 2960 E-GFPPMASIMIRPP----------------DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKNFGF 3014 (3015)
T ss_pred c-CCCCCCceeecCc----------------ccccCCcccchhhheeeechhhHHHHHHHHHHhhhcccccc
Confidence 2 2234444444443 57899999999999999999999999999999999864334
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=294.55 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=268.0
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++.++.+|+.|..++++..|++|+|+|.++.+...+.+ ..++.+|.||.|+.+|.++ +.+++..|+|||+||+..++.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChH
Confidence 47899999999876689999999999999999887766 5789999999999999988 499999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccC-cc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEH-PT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~-~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
++..|+++|++++|+ .++...+ +.+..+++|+|.|+|+.. |. ...-...|+.|..+|...+..++..|+|+++++
T Consensus 186 ~Rd~vl~~g~l~pLl-~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLL-RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHH-HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999 6666555 578899999999999875 33 455567899999999999999999999999999
Q ss_pred ccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
..+. +..+.....+++|.|+.+|.+.+..++.-|+.++.||+.| ++++.+.+++.|+++.|..||....
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~------- 334 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSP------- 334 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCc-------
Confidence 9854 5556666679999999999999999999999999999998 9999999999999999999998542
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccc-cCCCHHHHHHHHHHhhccCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPA-LSRPAEQIFEIVNLANELLPP 320 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i-~~~~~~qi~~vi~li~~LLP~ 320 (1720)
...++..|+|+|+||++|+.+++++++++|++|.|..+|.... ++++|+++|+ ..|+++|+..+++ .+++++
T Consensus 335 -~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~--~giI~p 411 (514)
T KOG0166|consen 335 -KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE--QGIIKP 411 (514)
T ss_pred -chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH--cCCchh
Confidence 4558899999999999999999999999999999999998765 4899999986 6679999999999 999999
Q ss_pred CCCC
Q 000286 321 LPQG 324 (1720)
Q Consensus 321 L~~~ 324 (1720)
+|+-
T Consensus 412 lcdl 415 (514)
T KOG0166|consen 412 LCDL 415 (514)
T ss_pred hhhc
Confidence 9984
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=256.97 Aligned_cols=296 Identities=18% Similarity=0.148 Sum_probs=257.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+.++++|+.+........|++|.|+|.++.+..++++ ..++..|.||.|+++|.+. +.++..+|.|||+||+..++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchh
Confidence 45678888888544356889999999999999888776 5788999999999999977 589999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccC-c--chhhhcCchhHHhhhhccCChHHHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEH-P--TACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~-~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1720)
++..|++.|++.+|+ .|+.+.. +.+...+.|+|.|+|+.. | +--.-.-+++.|..++...++++...|+|+++.
T Consensus 191 ~RD~vL~~galeplL-~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLL-GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHH-HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 999999999999999 5555544 588899999999999852 2 322223468889999999999999999999999
Q ss_pred hccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 166 MCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 166 lc~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
+..+. +......-.++.+.|+.+|.|++.+|+.-|+..+.||+.| ++.+.+.+++.|+++.+..||++.
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~------- 339 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP------- 339 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---CccceehheecccHHHHHHHhcCh-------
Confidence 99854 4444555578899999999999999999999999999998 999999999999999999999887
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCC---CHHHHHHHHHHhhcc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSR---PAEQIFEIVNLANEL 317 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~---~~~qi~~vi~li~~L 317 (1720)
..++...++|.|+||.+|+.++++++|+++++|.|+.+|.... +++||+++|.+.| -+++|..+++ .+.
T Consensus 340 --ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG~ 415 (526)
T COG5064 340 --KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QGF 415 (526)
T ss_pred --hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--ccc
Confidence 4579999999999999999999999999999999999998653 5899999997554 5689999999 999
Q ss_pred CCCCCC
Q 000286 318 LPPLPQ 323 (1720)
Q Consensus 318 LP~L~~ 323 (1720)
+-|||+
T Consensus 416 IkpLc~ 421 (526)
T COG5064 416 IKPLCD 421 (526)
T ss_pred hhHHHH
Confidence 999987
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=293.55 Aligned_cols=378 Identities=17% Similarity=0.145 Sum_probs=296.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+.++.|+..|++. |+..|.+|++.|..+.... ++....+...|+||.||++|+++.++.+|.+|+|||+||+.++++
T Consensus 188 aGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 188 AGGVDILVKLLSSG-NSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 56789999999886 9999999999998777654 334567889999999999998766689999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc---------HHHHHHHHHHHHHhhccCcc-----------------hhhhcCchhHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY---------MDLAEQSLQALKKISQEHPT-----------------ACLRAGALMAV 144 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~---------~dl~Eqal~aL~nIS~~~~~-----------------~Il~~GgL~~L 144 (1720)
++..|++.|+||.|+ +++..+. ..++|+|+|||+|||++... .+...|+|..+
T Consensus 266 ~r~~Iv~aGgIp~LI-~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 266 AKQAIADAGGIPALI-NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHCCCHHHHH-HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 999999999999999 7776554 45799999999999996332 12345889999
Q ss_pred hhhhccCChHHH----HHHHHHHHHhccCC-CCchhHHH-------------------hCcHHHHHHhhccCCHHHHHHH
Q 000286 145 LSYLDFFSTGVQ----RVALSTAANMCKKL-PSDAADFV-------------------MEAVPLLTNLLQYHDAKVLEHA 200 (1720)
Q Consensus 145 L~lLd~~~~~vq----r~Al~aLsNlc~~~-~~~~~~~v-------------------~~~lP~L~~LL~~~D~~V~e~A 200 (1720)
+..++......+ ++++|+|.|+|++. +...+..+ .++++.|+.+|...+.++++++
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 998886555444 36789999999965 33322222 3567788888888899999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 000286 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGI 280 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~ 280 (1720)
||+|.+|+++ +.+..+.+++.|.++.|+++|.+. +..++..++++|++|+.+++++++.++++|+++.
T Consensus 425 v~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~---------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 425 IRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS---------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC---------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 9999999996 899999999999999999999986 5789999999999999999999999999999999
Q ss_pred HHHhhcCCCc----ccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 281 LKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 281 L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
|.+||.+.+. .+.|++.|+.. ..+|++.++.
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~-------------------------------------------- 527 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVE-------------------------------------------- 527 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHH--------------------------------------------
Confidence 9999986543 45666666543 2344444442
Q ss_pred CCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh
Q 000286 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il 436 (1720)
-...+|.|++++.+. ++.++..++++|.++++..+.+.+.. |..+|
T Consensus 528 -----------------------~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~----------Lv~LL 573 (2102)
T PLN03200 528 -----------------------SAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQ----------LTALL 573 (2102)
T ss_pred -----------------------HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHH----------HHHHh
Confidence 014567777777664 78899999999999999988887632 34557
Q ss_pred hcCCCchHHhHHHHHHHHHhhCchh--hhhhHHhhcHHHHHHHHHhcC
Q 000286 437 AWKDPHVLIPSLQIAEILMEKLPGT--FSKMFVREGVVHAVDQLILAG 482 (1720)
Q Consensus 437 ~~~d~~lv~~aL~i~~~Ll~K~pd~--f~~~f~REGV~~~I~~L~~~~ 482 (1720)
.+.++.++..+|..+..++.-.... ...--...|.+..+..|..++
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 7788888888887776665432221 111122357778888887754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=282.94 Aligned_cols=395 Identities=15% Similarity=0.105 Sum_probs=314.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.||..|... +.+.|..+++.|+.+... +++.++.+...|.+|.||++|+++ +.++|..|+|+|.||+.++++++
T Consensus 405 aik~LV~LL~~~-~~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 405 AKKVLVGLITMA-TADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred chhhhhhhhccC-CHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 355667777776 789999999999776654 455567889999999999999987 59999999999999999999999
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h-hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A-CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~-Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
..|+++|+||.|+ +||.+++.+++++|+|+|+||+.+..+ . |.++|++++|+.+|+..+..+|+.|+|+|.|++.+
T Consensus 482 ~aIieaGaIP~LV-~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLV-QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999986554 3 55889999999999999999999999999999875
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~ 249 (1720)
.+. +.++.|+.+|.++|++++..++.+|.+|...........+.....|.++.|++||.++ +..
T Consensus 561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---------s~~ 624 (2102)
T PLN03200 561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---------KEE 624 (2102)
T ss_pred cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---------CHH
Confidence 432 2458899999999999999999999998764212222334445679999999999987 688
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc----ccccccccccC-CCHHHHHHHHHHhhccCCCCCCC
Q 000286 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALS-RPAEQIFEIVNLANELLPPLPQG 324 (1720)
Q Consensus 250 i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~-~~~~qi~~vi~li~~LLP~L~~~ 324 (1720)
++..|.++|.++|+++.++.+.++..|+++.|..+|.+... .+.|++.++.. ++.+|+..+++ .+.+|+|++=
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~--~GaV~pL~~L 702 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA--EDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH--cCCHHHHHHH
Confidence 99999999999999999999999999999999999987653 67888777653 57788888888 9999999872
Q ss_pred CCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccCCHHHHHHH
Q 000286 325 TISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKC 403 (1720)
Q Consensus 325 ~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llP~L~~vy~ss~~~~VR~~~ 403 (1720)
.-+-+ .. -......=...+..+++....+. ...+|.|+++..+. ++.+|+.+
T Consensus 703 L~~~d----------------------~~----v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~A 755 (2102)
T PLN03200 703 AKSSS----------------------IE----VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNA 755 (2102)
T ss_pred HhCCC----------------------hH----HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHH
Confidence 11000 00 00011122234455666666666 58899999998876 68899999
Q ss_pred HHHHHHHhhcCCHHH-HHHhhhccchHHHHHHHhhcCCCchHHh--HHHHHHHHHh
Q 000286 404 LSVIGKLMYFSSAEM-IQSLLSVTNISSFLAGVLAWKDPHVLIP--SLQIAEILME 456 (1720)
Q Consensus 404 L~~l~r~v~~~~~~~-L~~~l~~~~iss~la~il~~~d~~lv~~--aL~i~~~Ll~ 456 (1720)
.++|+.+....+.+. +.+.+....+-.-|..+|...|...+.. ||.....|.+
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 999999998888765 7665555555555667777777655554 8888777775
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=178.96 Aligned_cols=291 Identities=16% Similarity=0.187 Sum_probs=240.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.+..|+.....+ .-..|..|+.++..+.....+. ..+...|.+.+|.++-+++ +.-+|..|..+|.||.. .-+++
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmTh-s~EnR 201 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTH-SRENR 201 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhh-hhhhh
Confidence 456677777776 6688999999998888875443 3577888999999966666 48899999999999985 45788
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcC--chhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
+.+|.+|+||.|+ .|+.+.+.++++.|..+++||+.+... .+.+++ .+++|+++++..+..+|..|..++.|++.
T Consensus 202 r~LV~aG~lpvLV-sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 202 RVLVHAGGLPVLV-SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhccCCchhhh-hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999 999999999999999999999987553 566777 89999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
..++.......+.+|.|+.+|+++--..+-....|+.+|+- +|-+--.++++|.+..||.+|...+ +.
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrlL~~~d--------nE 348 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRLLRAGD--------NE 348 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc----ccCcccceecccchhHHHHHHhcCC--------ch
Confidence 88777766778999999999998877777788899999998 6777778889999999999999886 78
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc---ccCCCHHHHHHHHHHhhccCCCCCC
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP---ALSRPAEQIFEIVNLANELLPPLPQ 323 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~---i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1720)
+++..+...|.|++..+......++++|.++.+..|+...+.+....++. .++-+.+--.++++ .+++|.|+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp 424 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIP 424 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeec
Confidence 89999999999999999999999999999999999998665422111111 12223334455566 677776665
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-15 Score=168.27 Aligned_cols=262 Identities=17% Similarity=0.153 Sum_probs=220.8
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+++.+..+...-++. |-..|..|+..|.++.....+. +.++..|.+|.||.+|+.. ++++|..||-+|.||+- ..
T Consensus 165 ~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnR--r~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaV-d~ 239 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENR--RVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAV-DR 239 (550)
T ss_pred hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhh--hhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhh-hH
Confidence 456677777733565 8899999999988777664443 5688999999999999987 59999999999999985 44
Q ss_pred cchhhhcccc--cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHH
Q 000286 90 SSCAAVVHYG--AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1720)
Q Consensus 90 ~~~~~vV~~G--aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1720)
..+..+++.+ .||.|+ .|+......++.||.-||+||+.+... .|+++|+||.++.+|........-..+.|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv-~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALV-DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHH-HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 5777888888 999999 999999999999999999999998764 79999999999999998888888889999999
Q ss_pred hccCCCCchhHHHhCcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 166 MCKKLPSDAADFVMEAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 166 lc~~~~~~~~~~v~~~lP~L~~LL~~~D~~-V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
++...-......-.+++..|+.+|...|.+ ++-.|..+|.+|+.+ ...+...+++.|.++++.+|+...
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas---se~n~~~i~esgAi~kl~eL~lD~------- 388 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS---SEHNVSVIRESGAIPKLIELLLDG------- 388 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh---hhhhhHHHhhcCchHHHHHHHhcC-------
Confidence 998655555555678999999999998855 999999999999996 677788999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
+.+++..+-.|++.++-. ++-...+++.|+++.|+.++.+...
T Consensus 389 --pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 389 --PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred --ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccch
Confidence 456788888888888755 4445789999999999998765543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=152.51 Aligned_cols=289 Identities=16% Similarity=0.139 Sum_probs=198.5
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.-++.|+..|+.+.++++++.|+++|..++-.. ++....++..+.||.|+.=|.--...++-.++..||-.|.. ++
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RH 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hc
Confidence 356778888888889999999999998877765 33445677889999999988755567787888888888875 56
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc----chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP----TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~----~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
-.+++++|+|-+.+ ..++--.+-.+..|+.+-.|+|..-+ ..|++ +||.|-.+|.+.+......++-|+..+.
T Consensus 287 ~~AiL~AG~l~a~L-sylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVL-SYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 67899999999888 66777778899999999999997532 24554 5888888888888888888888888877
Q ss_pred cCC--CCchhHHH--hCcHHHHHHhhccCCH----HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC
Q 000286 168 KKL--PSDAADFV--MEAVPLLTNLLQYHDA----KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239 (1720)
Q Consensus 168 ~~~--~~~~~~~v--~~~lP~L~~LL~~~D~----~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~ 239 (1720)
.+- ....++.+ .+.|.-...||.-++. .+-......|+.++.+ .+.....+...++..-|..+|....
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~---~pl~~~tl~k~~I~~~L~~il~g~s- 439 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG---SPLLFRTLLKLDIADTLKRILQGYS- 439 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC---ChHHHHHHHHhhHHHHHHHHHhccC-
Confidence 633 23333333 4677777777766542 3344455667777775 7888888888999988888887652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCC
Q 000286 240 GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLP 319 (1720)
Q Consensus 240 ~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP 319 (1720)
++ + +.... -+...++.....++ ..+..||-- ..+.-|.+-..-.+++++++.++++|
T Consensus 440 ~s-~---nas~~--------~~l~r~Pnel~e~~-----sl~~eLlp~------~p~e~i~~~~~~~~~~~~n~~~~~~~ 496 (1051)
T KOG0168|consen 440 KS-A---NASLH--------ELLSRSPNELYELT-----SLIIELLPC------LPVEGIFAVDCSLIYEIVNLADELLW 496 (1051)
T ss_pred cC-c---ccccc--------cccccCcHHHHHHH-----HHHheeecC------Ccccceeehhhhhhcccccccccccc
Confidence 10 0 10000 11112222211111 122222221 11122333456678889999999999
Q ss_pred CCCCCCCCCCccccc
Q 000286 320 PLPQGTISLPSSSNM 334 (1720)
Q Consensus 320 ~L~~~~~s~~~~~~~ 334 (1720)
+++++..+.++|.+.
T Consensus 497 ~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 497 QWRDDRGSWHTYTNI 511 (1051)
T ss_pred cCccccccccccchh
Confidence 999988887777654
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=158.62 Aligned_cols=372 Identities=19% Similarity=0.227 Sum_probs=276.9
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+-++.|+..|.++ +....+.++.-|.++-....+ ...+...|+|+.|+++|..+ +.+++..|.++|.|++- .++
T Consensus 289 ~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~EN--K~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSf-d~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKEN--KDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSF-DPE 363 (708)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-CHH
Confidence 35677889899876 889999999999766555333 35678899999999999987 58999999999999986 457
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhc
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMC 167 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc 167 (1720)
.+..+|+.|+||.|+ .|+..+ ..+.-|+..|.+||.+... .+...++++.++++|-. ....++..+++.+.|||
T Consensus 364 ~R~~mV~~GlIPkLv-~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLV-ELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHHCCCcHHHH-HHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 888999999999999 787654 5667799999999987553 56677899999998764 56667888999999999
Q ss_pred cCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~l 246 (1720)
.+........-.+.++.|+.. ++..|+-++ .+|.||+.. ++ ..+..+. +.|..|+.++..++
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~h---~~-~~k~~f~-~~i~~L~~~v~~~~-------- 503 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQH---DG-PLKELFV-DFIGDLAKIVSSGD-------- 503 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHhc---Cc-hHHHHHH-HHHHHHHHHhhcCC--------
Confidence 987766665556789999988 667776554 478888872 43 3444442 57889999988765
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCC
Q 000286 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTI 326 (1720)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~ 326 (1720)
+.+....|+.+|+|+...+.+-.+.+.+.++++.|..+|.... ...+.+.+++-+++ .+.
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~------------~~dDl~LE~Vi~~g-tla------- 563 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA------------SEDDLLLEVVILLG-TLA------- 563 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC------------CChHHHHHHHHHHH-HHH-------
Confidence 6889999999999999888777777778999999999997332 12345555554322 111
Q ss_pred CCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccC-CHHHHHHHH
Q 000286 327 SLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSV-NSPVRHKCL 404 (1720)
Q Consensus 327 s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llP~L~~vy~ss~-~~~VR~~~L 404 (1720)
.+++....++ ..+++.|++++.+.. |-.+=-.++
T Consensus 564 --------------------------------------------~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil 599 (708)
T PF05804_consen 564 --------------------------------------------SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL 599 (708)
T ss_pred --------------------------------------------CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence 1233344444 378888888886554 567777889
Q ss_pred HHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHH
Q 000286 405 SVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHA 474 (1720)
Q Consensus 405 ~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~ 474 (1720)
.+.++++.+ ++.-..+++...+...+.-++..++..+--.|=.+..++++--++ |....++|-.-..
T Consensus 600 ~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~-w~~ri~~~kF~~h 666 (708)
T PF05804_consen 600 YVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE-WAERIRREKFRWH 666 (708)
T ss_pred HHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH-HHHHhhHHHHHHH
Confidence 999999998 445556778777888888888777776665555555556654433 6666666655444
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=140.81 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=243.5
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+...|+|+.||++|..+ +.++...+.++|.+|+- ..++...+.+.|+||.|+ +|+.+++.++.+.++++|.|+|-
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~-kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLL-KLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhCc
Confidence 4577899999999999876 69999999999999985 457888999999999999 99999999999999999999998
Q ss_pred cCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHH
Q 000286 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~ 206 (1720)
+... .+++.|.++.++.+|.. .+.+..|+.++.|+|........-...+++|.|+.+ +..++.++...+.+.+.|
T Consensus 361 d~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 361 DPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred CHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 8764 79999999999999984 456677999999999977666655667899999998 556678887788888999
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
++. ++.+.+.+++.+.++.|+....... + .-.+++|.||+..+.. .+.++. +.+..|..++.
T Consensus 439 La~----~~rnaqlm~~g~gL~~L~~ra~~~~--------D----~lLlKlIRNiS~h~~~-~k~~f~-~~i~~L~~~v~ 500 (708)
T PF05804_consen 439 LAL----NKRNAQLMCEGNGLQSLMKRALKTR--------D----PLLLKLIRNISQHDGP-LKELFV-DFIGDLAKIVS 500 (708)
T ss_pred Hhc----CHHHHHHHHhcCcHHHHHHHHHhcc--------c----HHHHHHHHHHHhcCch-HHHHHH-HHHHHHHHHhh
Confidence 998 7888899998888999998875531 1 2356789999988744 333322 34555555554
Q ss_pred CCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHH
Q 000286 287 GSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSARE 366 (1720)
Q Consensus 287 ~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 366 (1720)
... +.+.+.+++-.+++|-.+ + . .
T Consensus 501 ~~~-------------~ee~~vE~LGiLaNL~~~--~--l-------------------------------------d-- 524 (708)
T PF05804_consen 501 SGD-------------SEEFVVECLGILANLTIP--D--L-------------------------------------D-- 524 (708)
T ss_pred cCC-------------cHHHHHHHHHHHHhcccC--C--c-------------------------------------C--
Confidence 322 345556666544443220 0 0 0
Q ss_pred HhhccCHHHHHHHH--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhh--cCCC
Q 000286 367 KLLSDQPELLQQFG--MDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLA--WKDP 441 (1720)
Q Consensus 367 ~~~~~~pe~~~~f~--~~llP~L~~vy~ss-~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~--~~d~ 441 (1720)
..+++ ..++|.|.+..... ...++--+++.++--+. ++++. ..++....+...|..+|. ++|.
T Consensus 525 ---------~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--~d~~~-A~lL~~sgli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 525 ---------WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--SDPEC-APLLAKSGLIPTLIELLNAKQEDD 592 (708)
T ss_pred ---------HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--CCHHH-HHHHHhCChHHHHHHHHHhhCchH
Confidence 11222 27888888887443 45567777776666555 34444 444444555555666665 3567
Q ss_pred chHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 442 HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 442 ~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+|+..+-+..-|+.. ++.........++...+-.|..
T Consensus 593 E~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~ 630 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMH 630 (708)
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhc
Confidence 7888877777777755 4444444455666666555554
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=130.73 Aligned_cols=367 Identities=17% Similarity=0.189 Sum_probs=254.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhh
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~v 95 (1720)
-|+..|+.. +++....++..|.+++...... ....++.+.|...|.++ ++.++..|+++|.+++.........+
T Consensus 42 ~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~----~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 42 VLFDCLNTS-NREQVELICDILKRLLSALSPD----SLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHhhc-ChHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 367778766 7777778888888888764322 12567889999999987 59999999999999998887777889
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC-C
Q 000286 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-S 172 (1720)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~ 172 (1720)
++.++++.++ .++..++..+++.|+.+|.+|+..... .++..+.+..|..++...+..++..+..++.++|...+ .
T Consensus 116 ~~~~l~~~i~-~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLII-QCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHH-HHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999 999999999999999999999987665 47788889999999988677788889999999997543 3
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.....-.++++.|...|..+|.-++.+|+-+|..|+. .+...+.+.+.|++++|+++|...+.. | .++.-...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~d--p-~~~~~~l~ 267 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEED--P-RLSSLLLP 267 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccC--C-cccchhhh
Confidence 3333345799999999999999999999999999999 788899999999999999999876411 2 12223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccc
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSS 332 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~ 332 (1720)
..++..++++..++...-... -.++..|..++.+.+ ......+++-++. |-.
T Consensus 268 g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d--------------~~~~~~A~dtlg~-igs------------ 319 (503)
T PF10508_consen 268 GRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQD--------------PTIREVAFDTLGQ-IGS------------ 319 (503)
T ss_pred hHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCC--------------hhHHHHHHHHHHH-HhC------------
Confidence 556899999987655443222 233344444443322 2222333331110 000
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000286 333 NMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMY 412 (1720)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~ 412 (1720)
...-+.-+....++.+..+++. +.+ +..+...++|-.+|.++..|+.
T Consensus 320 ----------------------------t~~G~~~L~~~~~~~~~~~l~~----~~~-~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 320 ----------------------------TVEGKQLLLQKQGPAMKHVLKA----IGD-AIKSGSTELKLRALHALASILT 366 (503)
T ss_pred ----------------------------CHHHHHHHHhhcchHHHHHHHH----HHH-HhcCCchHHHHHHHHHHHHHHh
Confidence 0112222223333333333322 222 3344567899999999999987
Q ss_pred cCCH---HHHHH-------hhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhh
Q 000286 413 FSSA---EMIQS-------LLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 457 (1720)
Q Consensus 413 ~~~~---~~L~~-------~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K 457 (1720)
.... +.+.. .+...+...+|-+++.+.-+.+.+.|+.+..-|...
T Consensus 367 ~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 367 SGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 7654 11211 222244444666666555577777777776666544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=126.85 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=165.2
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
+...+-+..|+.+|+...+|.+|..|..+|+|.+ +.|.....+.+.|+|+.+. .++..++..++++|+|||.|+|...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~-~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIG-SLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHH-HHcCCCChHHHHHHHHHHHhcCCCh
Confidence 4555668999999998778999999999999975 4666777888999999999 9999999999999999999999887
Q ss_pred cch-hhhcCchhHHhhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 132 PTA-CLRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 132 ~~~-Il~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.+. .++. .+..++..+- ..+..+|..++.+|.|++...... ..+...+|.|..+|...+.++..+++++|.+|+
T Consensus 86 en~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 763 3333 4666666443 247899999999999998754443 346779999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 209 EAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 209 ~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
. +++....++.++++..++.|+.... +.++...+|.++.||..+
T Consensus 163 ~----np~~~~~Ll~~q~~~~~~~Lf~~~~--------~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 E----NPDMTRELLSAQVLSSFLSLFNSSE--------SKENLLRVLTFFENINEN 206 (254)
T ss_pred c----CHHHHHHHHhccchhHHHHHHccCC--------ccHHHHHHHHHHHHHHHh
Confidence 9 8999999999999999999998763 567888899999888543
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=114.85 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=106.0
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
+...|+++.|+++|.+. +++++..|+++|.|++...++....+++.|++|.|+ +++..++..+++.|+|+|.||+...
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~-~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHH-HHHhCCCHHHHHHHHHHHHHHccCc
Confidence 55778999999999977 499999999999999999899999999999999999 8899999999999999999999887
Q ss_pred cc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 132 PT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 132 ~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
+. .+.+.|+++.++.+|+..+..+++.|+|++.|+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 54 47789999999999999999999999999999983
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=116.05 Aligned_cols=263 Identities=14% Similarity=0.127 Sum_probs=212.2
Q ss_pred hHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC---
Q 000286 13 RLKKILSGLR-ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--- 88 (1720)
Q Consensus 13 ~l~~Ll~~L~-s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~--- 88 (1720)
.+.-+|..|. +.++.+.-...++.+.+...| ++...+.|...++.|.+...|..+.-..+..+++|++.-|.-..
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIM-HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 3455566663 223678888888888766665 45555678888999999978876654578889999999987432
Q ss_pred ------CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCCh----HHH
Q 000286 89 ------PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFST----GVQ 156 (1720)
Q Consensus 89 ------p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~----~vq 156 (1720)
.++...++..|+..+|++.|..-.++++......+|.-|+.+.. +.|.+.|||..|+..++..+. ..-
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 24566788889999999777777789999999999999997665 479999999999999986433 355
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhh
Q 000286 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL 234 (1720)
+.++..+.-++.+....+..+.++.+|.|+.+ ++| +|+.|++.+|.|++.||-. .|++-..+++.|.-...++-|
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHHhcchHHHHHHHH
Confidence 67889999999888888877788999999999 444 5799999999999999996 999999999999999999988
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
..-. ....++..+.+++.||+..+.+....++..|+=..|.+...
T Consensus 382 kahP-------~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 382 KAHP-------VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred HhCc-------HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 7542 25679999999999999999999999999997666655443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=128.72 Aligned_cols=266 Identities=22% Similarity=0.207 Sum_probs=205.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc-
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS- 90 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~- 90 (1720)
-.+++.+..|.+. ++.+|-.|...| +.++.+++.....+-.-|.||.||.+|.+. +.++|..|||||.||.-+...
T Consensus 233 ~~lpe~i~mL~~q-~~~~qsnaaayl-QHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ-DPSVQSNAAAYL-QHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccHHHHHHHhcc-ChhhhHHHHHHH-HHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCc
Confidence 3578889999887 999999998888 888888776656677889999999999987 699999999999999988766
Q ss_pred -chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC------------------------------c-----c-
Q 000286 91 -SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH------------------------------P-----T- 133 (1720)
Q Consensus 91 -~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~------------------------------~-----~- 133 (1720)
..-.|.+++.||.|+..|-.+.+.+++|++.-+|-|++... + .
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 77789999999999955555789999999999999886540 1 0
Q ss_pred ------hhh----------------hcCchhHHhhhhc------cCChHHHHHHHHHHHH--------------------
Q 000286 134 ------ACL----------------RAGALMAVLSYLD------FFSTGVQRVALSTAAN-------------------- 165 (1720)
Q Consensus 134 ------~Il----------------~~GgL~~LL~lLd------~~~~~vqr~Al~aLsN-------------------- 165 (1720)
-++ -.|.|.+|+.++. ..+....++|+.++.|
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 011 1355666666663 1223333444444444
Q ss_pred ----------------------------------------------------------------------------hccC
Q 000286 166 ----------------------------------------------------------------------------MCKK 169 (1720)
Q Consensus 166 ----------------------------------------------------------------------------lc~~ 169 (1720)
++..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 4332
Q ss_pred CCCch------hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCC
Q 000286 170 LPSDA------ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1720)
Q Consensus 170 ~~~~~------~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1720)
..... +...+.++|.|+.+|+.+|..|+..++.+|.||+.. -..+.++..++++.|++.|.... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-----~rnk~ligk~a~~~lv~~Lp~~~---~~ 621 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-----IRNKELIGKYAIPDLVRCLPGSG---PS 621 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-----chhhhhhhcchHHHHHHhCcCCC---CC
Confidence 21111 112234679999999999999999999999999973 34555666889999999998763 34
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 244 ~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
..++.++...++.+|-+|.+.+...+..+++.+.++.|+-|..+.
T Consensus 622 ~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 622 TSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred cCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 678899999999999999999999999999999999999988773
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.5e-08 Score=123.62 Aligned_cols=252 Identities=21% Similarity=0.207 Sum_probs=204.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+-+..++..|... ...++++.++...+.... +...-..+.+..+|+.. +.+.-..+|.+|..+.....
T Consensus 3 ~~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-- 70 (503)
T PF10508_consen 3 EWINELLEELSSK---AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTS-NREQVELICDILKRLLSALS-- 70 (503)
T ss_pred hHHHHHHHHHhcc---cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccC--
Confidence 3467788888765 456677777766555432 11222234488899865 57777899999999998542
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
...+ ..+..+.|. ..|.++++.|++.|+++|++++++... .+.+.+.++.++..|...+..+...|+.++.+++.
T Consensus 71 ~~~l-~~~~~~~L~-~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 71 PDSL-LPQYQPFLQ-RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHH-HHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 2222 456777777 999999999999999999999987654 47789999999999999999999999999999998
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
.........-.+.++.|..++...+..+.-.++.++.+|+.. +++..+.+.+.|+++.++..|... +.
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~---S~~~~~~~~~sgll~~ll~eL~~d---------Di 216 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH---SPEAAEAVVNSGLLDLLLKELDSD---------DI 216 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CHHHHHHHHhccHHHHHHHHhcCc---------cH
Confidence 655444333456799999999988888888899999999985 999999999999999999999885 56
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
-++..++.+|..||. ++...+.|.+.|+++.|..+|.+...
T Consensus 217 Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 789999999999999 77788999999999999999987654
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=115.45 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=160.5
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.+..++.|+..|+...||.+|..|+..+++......++ ..+...|.++.+..+|..+ ++.++..|.+||.|++....
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 45689999999997779999999999999876554333 3466779999999999987 59999999999999986543
Q ss_pred cchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
....+- -.|+.+|..+...+ +.+++..++.+|.|++..... .++ .+.++.++.+|...+..+|.++++++.|++
T Consensus 87 -n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 -NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 333332 36889995555543 689999999999999876543 344 457999999999999999999999999999
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
.+..........++++.|..+++.. +.+++..+++.+.||.++++.
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 9876656566678999999998875 789999999999999988643
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=102.75 Aligned_cols=118 Identities=26% Similarity=0.273 Sum_probs=103.3
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
.+++.|+++.++.+|.+.+..++..++|++.|+|...+......+. +++|.|..+|.++|++++..|+|+|++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-- 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-- 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC--
Confidence 3678899999999999888899999999999999975444434444 9999999999999999999999999999996
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 213 ~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
.+...+.+++.|+++.|+++|... +..++..++++|.+||.
T Consensus 80 -~~~~~~~~~~~g~l~~l~~~l~~~---------~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 -PEDNKLIVLEAGGVPKLVNLLDSS---------NEDIQKNATGALSNLAS 120 (120)
T ss_pred -cHHHHHHHHHCCChHHHHHHHhcC---------CHHHHHHHHHHHHHhhC
Confidence 678888899999999999999875 57899999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=108.99 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=216.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcccc
Q 000286 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99 (1720)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~-~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G 99 (1720)
|.+..|...-+.+|..|..+... .++ +........++.+|... ++.++-....+++..-|-..--.++.+++.+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~-qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHK-QPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcC-Ccc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34555788888999999665554 333 44556677788888632 3567777777777777777667788899999
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc------------chhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHh
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHP------------TACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~------------~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1720)
+.|.+.+-|......++.....|++.-+-.+.. ..|.+.|++..|+..+. +.++.+...++.++..+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 999999778777777898999999999975422 36899999999999887 55788999999999988
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhcc-CCH---HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQY-HDA---KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~-~D~---~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
+-+.+.-......+.+.+|..++.. .+. .....+|..|..|+. +++....+++.|.++.++.++..-.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~h~---- 341 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALRHS---- 341 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHHcC----
Confidence 8776666666677899999999876 343 355677777777776 7889999999999999999986431
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc------ccccccccccCCCHHHHHHHHH
Q 000286 243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV------SANSAVPPALSRPAEQIFEIVN 312 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~------~~~~~~s~i~~~~~~qi~~vi~ 312 (1720)
-++.++..++.+++.||-.+|+.+..+++.|+.....+.+...+. .++|.+-|++.++.++-.-++.
T Consensus 342 ---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~ 414 (461)
T KOG4199|consen 342 ---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA 414 (461)
T ss_pred ---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence 278899999999999999999999999999999999999986653 5567776766666666555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-06 Score=98.16 Aligned_cols=212 Identities=15% Similarity=0.081 Sum_probs=158.6
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
-.++.|+..|.+. |..++..|+..|.++ ....+++.+..++.++ ++.++..|+|+|+.|-... .
T Consensus 23 ~~~~~L~~~L~d~-d~~vR~~A~~aL~~~------------~~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~--~ 86 (280)
T PRK09687 23 LNDDELFRLLDDH-NSLKRISSIRVLQLR------------GGQDVFRLAIELCSSK-NPIERDIGADILSQLGMAK--R 86 (280)
T ss_pred ccHHHHHHHHhCC-CHHHHHHHHHHHHhc------------CcchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc--c
Confidence 3577888888776 999999999998643 1234678888888876 6999999999999985421 1
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
. ..-++|.|...++..++..|+..|+.+|++++...... ....+..+...+...+..+++.|++++.++.
T Consensus 87 ~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---- 156 (280)
T PRK09687 87 C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---- 156 (280)
T ss_pred c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----
Confidence 1 22477888844578889999999999999996543311 1224455666666778899999999997653
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
-..+++.|..+|..+|..|...|+.+|..+... ++ .+++.|+.+|... +..++
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~---------~~~~~L~~~L~D~---------~~~VR 209 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NP---------DIREAFVAMLQDK---------NEEIR 209 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CH---------HHHHHHHHHhcCC---------ChHHH
Confidence 134899999999999999999999999998432 22 3566788888765 57899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
..+++.|+.+- ++ .+++.|...|..
T Consensus 210 ~~A~~aLg~~~--~~---------~av~~Li~~L~~ 234 (280)
T PRK09687 210 IEAIIGLALRK--DK---------RVLSVLIKELKK 234 (280)
T ss_pred HHHHHHHHccC--Ch---------hHHHHHHHHHcC
Confidence 99999999853 33 245677777764
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=96.18 Aligned_cols=372 Identities=13% Similarity=0.153 Sum_probs=197.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+.+++.+|-+.|++. |...+.+|++.+=.+..++. ....+.+..++++... +.+++....-.|.++++..|
T Consensus 30 ~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCh
Confidence 466889999999887 78888888887766665553 2334566667777655 47777777777777776666
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
+..-. +|..|. +=+..+++-++-.|+.+|++|-... +++ -.+.++.+.|.+.++.|.+.|+.|+.++.+.
T Consensus 101 elalL-----aINtl~-KDl~d~Np~IRaLALRtLs~Ir~~~---i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 101 EKALL-----AVNTFL-QDTTNSSPVVRALAVRTMMCIRVSS---VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHH-----HHHHHH-HHcCCCCHHHHHHHHHHHHcCCcHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 54322 344555 4455566666666666666664311 111 2344455555566666666666666666654
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHH--------------------------Hh
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDEL--------------------------CN 223 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l--------------------------i~ 223 (1720)
.+. .....+.++.|..+|...|+.|+.+|+.+|..|... .+..+... ..
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~---~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY---GSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 432 123444556666666666666666666666666543 11111110 00
Q ss_pred ---------CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000286 224 ---------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDILSGSGVSAN 293 (1720)
Q Consensus 224 ---------~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1720)
..++..+...|.+. ++.++..+++++.++.... ++....++. .+...|..|+.++....-
T Consensus 246 y~P~~~~e~~~il~~l~~~Lq~~---------N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss~~eiqy 315 (746)
T PTZ00429 246 QRPSDKESAETLLTRVLPRMSHQ---------NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRRDAETQY 315 (746)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCCCccHHH
Confidence 12455555555554 5678888888888887543 333222221 122445555433221110
Q ss_pred cccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhc--c
Q 000286 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLS--D 371 (1720)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~ 371 (1720)
..+ ..|.+|...-|.+....+ ...|.+- ..| . -....+.+++. .
T Consensus 316 vaL------------r~I~~i~~~~P~lf~~~~-----~~Ff~~~----~Dp------------~-yIK~~KLeIL~~La 361 (746)
T PTZ00429 316 IVC------------KNIHALLVIFPNLLRTNL-----DSFYVRY----SDP------------P-FVKLEKLRLLLKLV 361 (746)
T ss_pred HHH------------HHHHHHHHHCHHHHHHHH-----Hhhhccc----CCc------------H-HHHHHHHHHHHHHc
Confidence 111 001112222232221100 0000000 000 0 01112222221 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHH
Q 000286 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1720)
Q Consensus 372 ~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~ 451 (1720)
+++=+..++++| . -|...++..+|++++.+|.++..-. +.... .+-.+|..++..+.. ++..++..+
T Consensus 362 ne~Nv~~IL~EL----~-eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~------~cV~~Ll~ll~~~~~-~v~e~i~vi 428 (746)
T PTZ00429 362 TPSVAPEILKEL----A-EYASGVDMVFVVEVVRAIASLAIKV-DSVAP------DCANLLLQIVDRRPE-LLPQVVTAA 428 (746)
T ss_pred CcccHHHHHHHH----H-HHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH------HHHHHHHHHhcCCch-hHHHHHHHH
Confidence 222233333333 2 3777899999999999999976432 22222 233445555544333 566788889
Q ss_pred HHHHhhCchhh
Q 000286 452 EILMEKLPGTF 462 (1720)
Q Consensus 452 ~~Ll~K~pd~f 462 (1720)
+.|++|.|+.|
T Consensus 429 k~IlrkyP~~~ 439 (746)
T PTZ00429 429 KDIVRKYPELL 439 (746)
T ss_pred HHHHHHCccHH
Confidence 99999999853
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=112.53 Aligned_cols=231 Identities=17% Similarity=0.131 Sum_probs=175.9
Q ss_pred ccccccCcHHHHHHhhcCC-----------CCHHHHHHHHHHHHHhhccCCcchhh-hcccccHHHHHHHHhcCCcHHHH
Q 000286 50 STFSVDSFAPVLVGLLNHE-----------SNPDIMLLAARALTHLCDVLPSSCAA-VVHYGAVTCFVARLLTIEYMDLA 117 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~-----------~~~eiq~~AaraLtNL~~~~p~~~~~-vV~~GaVp~Lv~kLL~~~~~dl~ 117 (1720)
..+-.-|.+.++-+||.-. .+..+...|..+||||.=|.-.+... .-..|.+.++| .-|.+...+|.
T Consensus 333 ~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavV-AQL~s~peeL~ 411 (2195)
T KOG2122|consen 333 HAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVV-AQLISAPEELL 411 (2195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHH-HHHhcChHHHH
Confidence 4555667777666666521 13457789999999999877655554 34779999999 66666667888
Q ss_pred HHHHHHHHHhhccCc---chhh-hcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhhc
Q 000286 118 EQSLQALKKISQEHP---TACL-RAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 118 Eqal~aL~nIS~~~~---~~Il-~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL~ 190 (1720)
.-...+|.||+=+-. +.++ +.|-+.+|....- .......+..+.+|.||..+. ....|-.+-+++-.|+..|.
T Consensus 412 QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LS 491 (2195)
T KOG2122|consen 412 QVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLS 491 (2195)
T ss_pred HHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcc
Confidence 888899999984322 3455 5677777766543 334455666666677776633 33455567899999999998
Q ss_pred cC----CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000286 191 YH----DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1720)
Q Consensus 191 ~~----D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~ 266 (1720)
+. --.|+++|--.|.|+..-.....++.|.+.++.+|..|+++|.+. +..++..++.+|.||...++
T Consensus 492 Y~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---------SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 492 YEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---------SLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred ccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---------ceEEeecchhhhhhhhcCCH
Confidence 77 357899888888777665555788999999999999999999886 56688899999999999999
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCc
Q 000286 267 LCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 267 ~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
+-.+.|.+.|+++.|..|+.+..+
T Consensus 563 ~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 563 EDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HHHHHHHhcccHHHHHHHHhhhhh
Confidence 999999999999999999987654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.7e-06 Score=96.41 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=155.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.+..+...+++. |+..+..|++.|+++=. .+. .....++.|..++..+.++.++..|+.+|+++....+..
T Consensus 55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~---~~~----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 55 VFRLAIELCSSK-NPIERDIGADILSQLGM---AKR----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCC---Ccc----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-
Confidence 344455544555 99999999999988422 110 133578899988655557999999999999996533211
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
..-++..|. .++..++..|+..++++|++|.. ..+++.|+.+|...+..+...|+.+|.+++..
T Consensus 126 ----~~~a~~~l~-~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--- 189 (280)
T PRK09687 126 ----SPKIVEQSQ-ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--- 189 (280)
T ss_pred ----chHHHHHHH-HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---
Confidence 122556666 77778899999999999988753 23789999999988889999999999998422
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
...+++.|..+|...|..|...|.++|.++-+. .+++.|++.|...+ +..
T Consensus 190 -----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~--------------~av~~Li~~L~~~~-----------~~~ 239 (280)
T PRK09687 190 -----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK--------------RVLSVLIKELKKGT-----------VGD 239 (280)
T ss_pred -----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--------------hHHHHHHHHHcCCc-----------hHH
Confidence 125789999999999999999999999987652 47889999997652 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
.++.+|+.|-. + ..++.|.+++.
T Consensus 240 ~a~~ALg~ig~--~---------~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGD--K---------TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCC--H---------hHHHHHHHHHh
Confidence 78888888754 2 24567777775
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=109.19 Aligned_cols=198 Identities=18% Similarity=0.237 Sum_probs=161.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc----
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP---- 132 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~---- 132 (1720)
=+|..+.+|.+. ++.+|..|+--|-.+|-+.......|-+.|.||.|| .|+.+...+|+.||+|||.|+.-...
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv-~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLV-ALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHH-HHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 488999999876 599999999999999998888888888999999999 99999999999999999999974322
Q ss_pred c-hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc--cC------------CHHH
Q 000286 133 T-ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ--YH------------DAKV 196 (1720)
Q Consensus 133 ~-~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~--~~------------D~~V 196 (1720)
+ +|-+++|++.++.+|.. .+.+++..+.-++.||..+ +.-...++..++++|...+. +. +..|
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 2 69999999999999986 6889999999999999987 44555678889999988742 22 5789
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 197 LEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
..++..||.|+... ..+..+.+-+. |+|..|+..+.+.-. -...+...+..|+-+|.|+.-
T Consensus 391 f~n~tgcLRNlSs~---~~eaR~~mr~c~GLIdaL~~~iq~~i~---~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSA---GQEAREQMRECDGLIDALLFSIQTAIQ---KSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred eehhhhhhccccch---hHHHHHHHhhccchHHHHHHHHHHHHH---hccccchhHHHHHHHHhhcCc
Confidence 99999999999985 67777777765 899999998874210 111345567788888888753
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-05 Score=97.12 Aligned_cols=233 Identities=21% Similarity=0.218 Sum_probs=169.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
++.++++..+ .+...+.+++..|--+...+.+ ...+.+..++++.+. +..++..+--++..+....++..
T Consensus 8 el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~-------~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~~~~ 77 (526)
T PF01602_consen 8 ELAKILNSFK--IDISKKKEALKKLIYLMMLGYD-------ISFLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDPELL 77 (526)
T ss_dssp HHHHHHHCSS--THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC-------CchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcchhHH
Confidence 3444444444 2778888998888777666542 336788899999855 69999988889999988777633
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
.. ++..|. +=+.++++.++..|+.+|++|+. ..++ .-.++.+..++.+.++.++++|+-++..+++..+.
T Consensus 78 ~l-----~~n~l~-kdl~~~n~~~~~lAL~~l~~i~~---~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 78 IL-----IINSLQ-KDLNSPNPYIRGLALRTLSNIRT---PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HH-----HHHHHH-HHHCSSSHHHHHHHHHHHHHH-S---HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred HH-----HHHHHH-HhhcCCCHHHHHHHHhhhhhhcc---cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH
Confidence 33 566777 66788999999999999999982 2233 23678888999999999999999999999986432
Q ss_pred chhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 173 DAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 173 ~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
.+.. .+|.|..+|...|+.|+..|+.++..+ .. ++.... -+-..++..|.+++... ++-.+
T Consensus 148 ----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~---~~~~~~-~~~~~~~~~L~~~l~~~---------~~~~q 209 (526)
T PF01602_consen 148 ----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC---NDDSYK-SLIPKLIRILCQLLSDP---------DPWLQ 209 (526)
T ss_dssp ----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC---THHHHT-THHHHHHHHHHHHHTCC---------SHHHH
T ss_pred ----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc---Ccchhh-hhHHHHHHHhhhccccc---------chHHH
Confidence 2233 699999999999999999999999999 31 332222 12223456666666544 67899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
..++++|..++...+..... ..+++.+..+|.
T Consensus 210 ~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~ 241 (526)
T PF01602_consen 210 IKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQ 241 (526)
T ss_dssp HHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCChhhhhH---HHHHHHHHHHhh
Confidence 99999999999988877632 344556777666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-05 Score=98.87 Aligned_cols=215 Identities=20% Similarity=0.178 Sum_probs=137.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
..+.+.|++. |+..+..|++.|+.+... + ....+++.+.++|.++ ++.++..|+-|+..+....|+....
T Consensus 82 n~l~kdl~~~-n~~~~~lAL~~l~~i~~~---~-----~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 82 NSLQKDLNSP-NPYIRGLALRTLSNIRTP---E-----MAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHCSS-SHHHHHHHHHHHHHH-SH---H-----HHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHhhcCC-CHHHHHHHHhhhhhhccc---c-----hhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHHHHH
Confidence 3444555555 777777777777775521 1 1233677778888766 4788888888888887766643221
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
. .++.|. +|+...++.+...|+.+|..| ...+.. -+-...+..+.+++...++-.|..++.++.+++...+.
T Consensus 152 ---~-~~~~l~-~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 152 ---E-LIPKLK-QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp ---G-HHHHHH-HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred ---H-HHHHHh-hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 1 467777 777777788888888888888 222222 12223344444444567777788888888877764322
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.... ..+++.+..+|++.+..|+-.|+.++..+.. .+... ..+++.|+.+|.+. +.+++.
T Consensus 226 ~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~----~~~~~-----~~~~~~L~~lL~s~---------~~nvr~ 285 (526)
T PF01602_consen 226 DADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP----SPELL-----QKAINPLIKLLSSS---------DPNVRY 285 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----SHHHH-----HHHHHHHHHHHTSS---------SHHHHH
T ss_pred hhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhc----chHHH-----HhhHHHHHHHhhcc---------cchheh
Confidence 2211 5577777777777778888888888777766 33312 23467777777754 566777
Q ss_pred HHHHHHHHHhcCC
Q 000286 253 GLIRLLSTCASGS 265 (1720)
Q Consensus 253 ~alr~L~nLas~s 265 (1720)
.+++.|..|+...
T Consensus 286 ~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 286 IALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHCCHC
T ss_pred hHHHHHHHhhccc
Confidence 7888888877665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.5e-06 Score=108.37 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhhhcccccHHHHHHH
Q 000286 29 KQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD-VLPSSCAAVVHYGAVTCFVAR 107 (1720)
Q Consensus 29 ~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~-~~p~~~~~vV~~GaVp~Lv~k 107 (1720)
++.-|+.+|.+|.-...+-....+-..||+..+|..|.... .+++..-+-+|.||.= +.......+-+.|-|-.|+.-
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 34444445544433322222235788999999999998653 5888899999999973 223334455688999999866
Q ss_pred HhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccC----ChHHHHHHHHHHHHhcc----CCCCchh
Q 000286 108 LLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFF----STGVQRVALSTAANMCK----KLPSDAA 175 (1720)
Q Consensus 108 LL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~----~~~vqr~Al~aLsNlc~----~~~~~~~ 175 (1720)
-+......-...+|.||-||+.++.. .+--.|+|..|+.+|... +..+...|--||.|... ..++..+
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 66666655556788899999887764 355679999999999643 55666666666666554 3455566
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHH
Q 000286 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 255 (1720)
Q Consensus 176 ~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~al 255 (1720)
..-.+||-+|...|++..-.||.++|-+|.||... +++..+.|.+.|.|+.|.+||.+. ...+.....
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~gAv~mLrnLIhSK---------hkMIa~GSa 593 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---SPEDQQMLWDDGAVPMLRNLIHSK---------HKMIAMGSA 593 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC---CHHHHHHHHhcccHHHHHHHHhhh---------hhhhhhhHH
Confidence 66678999999999999999999999999999996 999999999999999999999876 344666666
Q ss_pred HHHHHHhcCC
Q 000286 256 RLLSTCASGS 265 (1720)
Q Consensus 256 r~L~nLas~s 265 (1720)
.+|.|+...-
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 6676666554
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=89.30 Aligned_cols=356 Identities=14% Similarity=0.134 Sum_probs=222.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc-----ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY-----GAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~-----GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..++..|+++|+...+.++.......+.-|+...|..+..+++. ....+++ .+|..++.-+.+.|+..|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 46899999999987778888777777778887777777766654 4567777 68888899999999999999976
Q ss_pred cCcchhhhcCchhHHh----hhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC--CHHHHHHHHH
Q 000286 130 EHPTACLRAGALMAVL----SYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH--DAKVLEHASV 202 (1720)
Q Consensus 130 ~~~~~Il~~GgL~~LL----~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~--D~~V~e~A~~ 202 (1720)
..+.. .....+..++ ..|.. .+...+..|+.++.++.+..+....-...+.++.|..+|... +..++-.+|.
T Consensus 131 ~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 54431 1111222233 33333 357788899999999999877776544566899999999753 5678888888
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC------HHHHHHHHHcC
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS------PLCAKTLLHLG 276 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s------~~~t~~Ll~~g 276 (1720)
|+--++- +++..+.+...++++.|++++.... ...+..-++.+|.|++..+ ......++++|
T Consensus 210 ~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~--------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 210 CIWLLTF----NPHAAEVLKRLSLIQDLSDILKEST--------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred HHHHHhc----cHHHHHhhccccHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 8877775 5566677777899999999998762 5678888888999998753 23456788899
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
+++.+..|... .|+ .+.|.+-++.+.+.|-.-....-+.+-|..-+..|.+.+.++ ..+ +.
T Consensus 278 l~~~l~~L~~r-----k~~--------DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~-H~s---e~-- 338 (429)
T cd00256 278 VLKTLQSLEQR-----KYD--------DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV-HKS---EK-- 338 (429)
T ss_pred hHHHHHHHhcC-----CCC--------cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC-CCC---ch--
Confidence 88877766542 232 233333333333332222221112222223334466655222 100 00
Q ss_pred CCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh
Q 000286 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il 436 (1720)
=..++..|.+ .++= .++-.|+++...+-++.+=-=++.=|.-.|.+... =+.++.....-..+..++
T Consensus 339 -FW~EN~~kf~--~~~~--------~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 339 -FWRENADRLN--EKNY--------ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred -HHHHHHHHHH--hcch--------HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHh
Confidence 0122333321 1221 44555666655555553322222223333333211 122333344566677888
Q ss_pred hcCCCchHHhHHHHHHHHHh
Q 000286 437 AWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 437 ~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
+++|+.+--.||+++..||-
T Consensus 406 ~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999998873
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00059 Score=90.29 Aligned_cols=306 Identities=13% Similarity=0.075 Sum_probs=208.4
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHH-HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAA-RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~~Aa-raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
..|=+..|-+.|++.+ ..-+..|. +.|++|+.|.. ... ..+-.+ +++.+.+.+++.-+--.|.+++...+
T Consensus 30 ~kge~~ELr~~L~s~~-~~~kk~alKkvIa~mt~G~D-vS~------LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGTD-SYRKKAAVKRIIANMTMGRD-VSY------LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCC-chH------HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccCh
Confidence 3556777888887664 55445555 57777777642 222 455566 78899999999999999999998887
Q ss_pred c-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 133 T-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 133 ~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
+ +++. +..+.+-+.+.++.++-.|+.+++++.. ..++..+++.|.+.|.+.++-|...|+.|+.+|-..
T Consensus 101 elalLa---INtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~- 170 (746)
T PTZ00429 101 EKALLA---VNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD- 170 (746)
T ss_pred HHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Confidence 7 5553 3445566667788888899999998753 245677889999999999999999999999999774
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
+++ .+.+.++++.|.++|... ++.++..|+.+|..|+..++.... +..+.+..|...|.. .
T Consensus 171 --~pe---lv~~~~~~~~L~~LL~D~---------dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e---~ 231 (746)
T PTZ00429 171 --DMQ---LFYQQDFKKDLVELLNDN---------NPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPE---C 231 (746)
T ss_pred --Ccc---cccccchHHHHHHHhcCC---------CccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhc---C
Confidence 553 344668899999999766 577999999999999876654321 222333334444432 2
Q ss_pred cccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhcc
Q 000286 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD 371 (1720)
Q Consensus 292 ~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 371 (1720)
..|.. + .+++++...-|.
T Consensus 232 ~EW~Q----------i-~IL~lL~~y~P~--------------------------------------------------- 249 (746)
T PTZ00429 232 NEWGQ----------L-YILELLAAQRPS--------------------------------------------------- 249 (746)
T ss_pred ChHHH----------H-HHHHHHHhcCCC---------------------------------------------------
Confidence 24432 2 345533322220
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHH
Q 000286 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1720)
Q Consensus 372 ~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~ 451 (1720)
+.+....++..+.|. .++ .+..|-..|..+++.+..+++++.+..+++. ++.-+..+ .+.++.+-..+|+.+
T Consensus 250 ~~~e~~~il~~l~~~----Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L-~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 250 DKESAETLLTRVLPR----MSH-QNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTL-SRRDAETQYIVCKNI 321 (746)
T ss_pred CcHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHh-hCCCccHHHHHHHHH
Confidence 011123444455554 333 5789999999999999988877665554322 22222232 457788889999999
Q ss_pred HHHHhhCchhhhhhHH
Q 000286 452 EILMEKLPGTFSKMFV 467 (1720)
Q Consensus 452 ~~Ll~K~pd~f~~~f~ 467 (1720)
..|+++.|.+|.++++
T Consensus 322 ~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 322 HALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHHCHHHHHHHHH
Confidence 9999999998877643
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=95.06 Aligned_cols=218 Identities=18% Similarity=0.222 Sum_probs=163.6
Q ss_pred CcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcc------cccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 56 SFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVH------YGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 56 g~Vp~LV~lL~~~-~~~eiq~~AaraLtNL~~~~p~~~~~vV~------~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
+.+..++.+|+.- ++.+++......|..|+...+.....+.. .....+|+ +++..++.-++++|+..|..|.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 4677777787765 67899999999999999999877776654 23678889 7999999999999999999998
Q ss_pred ccCcc--hhhhcCchhHHhhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-------ccCCHH
Q 000286 129 QEHPT--ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-------QYHDAK 195 (1720)
Q Consensus 129 ~~~~~--~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL-------~~~D~~ 195 (1720)
...+. .-...+.+..++++|.. .+...|..|+.++.++.+...........+.++.|..+| +..+..
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 76664 23236777888888864 345678999999999998877776666688999999999 234578
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 000286 196 VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL-CAKTLLH 274 (1720)
Q Consensus 196 V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~-~t~~Ll~ 274 (1720)
++-+++.|+--|+- +++..+.+...++++.|++++.... ...+..-++.+|.|++..+.. ....++.
T Consensus 214 l~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~L~~i~~~~~--------KEKvvRv~la~l~Nl~~~~~~~~~~~mv~ 281 (312)
T PF03224_consen 214 LQYQALLCLWLLSF----EPEIAEELNKKYLIPLLADILKDSI--------KEKVVRVSLAILRNLLSKAPKSNIELMVL 281 (312)
T ss_dssp HHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHH----------SHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CHHHHHHHhccchHHHHHHHHHhcc--------cchHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88899999988886 8999999999999999999998763 678888999999999988765 7788999
Q ss_pred cCChHHHHHhhc
Q 000286 275 LGISGILKDILS 286 (1720)
Q Consensus 275 ~gil~~L~~LL~ 286 (1720)
+|+++.+..|..
T Consensus 282 ~~~l~~l~~L~~ 293 (312)
T PF03224_consen 282 CGLLKTLQNLSE 293 (312)
T ss_dssp H-HHHHHHHHHS
T ss_pred ccHHHHHHHHhc
Confidence 999998888775
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00097 Score=84.39 Aligned_cols=339 Identities=12% Similarity=0.099 Sum_probs=233.2
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCc
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.+.-|+.||+-+.+..-++=...|||+|-.++. .++..|.- -++++|++.|-. -.+.++.-.++.+|.++-....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 344688888888766667778899999999986 45555554 457788845533 3568999999999999965431
Q ss_pred --------c------------hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHH---HhCcHHHHHHhh
Q 000286 133 --------T------------ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF---VMEAVPLLTNLL 189 (1720)
Q Consensus 133 --------~------------~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~---v~~~lP~L~~LL 189 (1720)
. .|...+-|..++.+++.++.++.+.++..++++.+..+..-... ....|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 37778999999999999999999999999999988765443222 245899999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 190 ~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
...-.-|...++..|+.++. +...++.++.. ++..+|..++.... + .-..-++..|+..|-||-..+...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k----~n~~IQKlVAFENaFerLfsIIeeEG---g--~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVK----DNSSIQKLVAFENAFERLFSIIEEEG---G--LDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred hhhhhhhchhHHHHHHHHHc----cCchHHHHHHHHHHHHHHHHHHHhcC---C--CCCcchHHHHHHHHHHHHhhCcch
Confidence 98888899999999999998 55667777755 69999999998652 1 112237889999999999998888
Q ss_pred HHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHH---HHHhhccCCCCCCCCCCCCccccccccCCcc
Q 000286 269 AKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEI---VNLANELLPPLPQGTISLPSSSNMFVKGPVV 341 (1720)
Q Consensus 269 t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~v---i~li~~LLP~L~~~~~s~~~~~~~~~~g~~~ 341 (1720)
.+...+.+.++.|..||.-.. ....|+. +-++.+ +..+..|+||=..
T Consensus 247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~--------Qrv~Nv~~~Lqivr~lVsP~Nt------------------ 300 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWST--------QRVQNVIEALQIVRSLVSPGNT------------------ 300 (970)
T ss_pred hhHHhccccHHHHHhhcCcccccCcccccccH--------HHHHHHHHHHHHHHHhcCCCCc------------------
Confidence 788888999999999886432 3445643 223333 3334444442110
Q ss_pred cCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhcCCH--HH
Q 000286 342 RKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFSSA--EM 418 (1720)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss-~~~~VR~~~L~~l~r~v~~~~~--~~ 418 (1720)
+ .. .+.....-+-..++-+|+.++.++ +-.+|+...+.++..||+-.-- +.
T Consensus 301 -------~-----------~~--------~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~ 354 (970)
T KOG0946|consen 301 -------S-----------SI--------THQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDE 354 (970)
T ss_pred -------H-----------HH--------HHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHH
Confidence 0 00 001101112247889999998777 9999999999999999975332 33
Q ss_pred HHHhhhc------cchHHHHHHHhhcCC-CchHHhHHHHHHHHHhh
Q 000286 419 IQSLLSV------TNISSFLAGVLAWKD-PHVLIPSLQIAEILMEK 457 (1720)
Q Consensus 419 L~~~l~~------~~iss~la~il~~~d-~~lv~~aL~i~~~Ll~K 457 (1720)
+.++.-. ..+--.+.+|.+++- ..+-+.++.+.+..+-+
T Consensus 355 F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 355 FADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 3433221 123333444444444 34555556666655544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00017 Score=85.24 Aligned_cols=185 Identities=19% Similarity=0.173 Sum_probs=147.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHH
Q 000286 23 ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVT 102 (1720)
Q Consensus 23 s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp 102 (1720)
+..++..+..|+..|-+++...++- ..+...|++..|+..|++. +.++...|+|+|+-++..+|.....|++.|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 3348899999999998877765543 3577778888888888876 599999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhcc--CChHHHHHHHHHHHHhccCCCCchhHH
Q 000286 103 CFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF--FSTGVQRVALSTAANMCKKLPSDAADF 177 (1720)
Q Consensus 103 ~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~--~~~~vqr~Al~aLsNlc~~~~~~~~~~ 177 (1720)
.|+..|-...+..++.+|+.|+..+.++++. ..+..+|...|...+.. .+...||+++..++++........-..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9995555556788889999999999998875 58888999999999987 678899999999999998554333333
Q ss_pred H-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 V-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
. ...--.+..+....|..+-+.++.++..+..-
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 3 33344444555666788888888887776664
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0027 Score=84.20 Aligned_cols=439 Identities=16% Similarity=0.161 Sum_probs=259.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc-
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS- 91 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~- 91 (1720)
-+..|..-++...||..+--|+..+|+++..- =..+..=....+-..|+.++.++..+.+...-|+++.-|+...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~ 115 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK 115 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence 34555556666668999888999999998872 1222222344467778888888888899999999999888643222
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh--hcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL--RAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il--~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
+. +.++.|. .-..++++.++|-|+..|..+...-++... -.-.+..+.+-+...+..+.-.|+.++.-+...
T Consensus 116 WP-----ell~~L~-q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 116 WP-----ELLQFLF-QSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEY 189 (1075)
T ss_pred hH-----HHHHHHH-HHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 22 3455666 777889999999999999999875443211 011233344444555556777888888887774
Q ss_pred C--CCchhHHHhCcHHHHHHhh----ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCC
Q 000286 170 L--PSDAADFVMEAVPLLTNLL----QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1720)
Q Consensus 170 ~--~~~~~~~v~~~lP~L~~LL----~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1720)
. ...........+|.+.+.+ +..|.+....++.+|.-++.. .+..+...+.. ++.-..++..+.+
T Consensus 190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---~pk~l~~~l~~-ii~~~l~Ia~n~~----- 260 (1075)
T KOG2171|consen 190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---EPKLLRPHLSQ-IIQFSLEIAKNKE----- 260 (1075)
T ss_pred hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---chHHHHHHHHH-HHHHHHHHhhccc-----
Confidence 4 3566667788888777664 567888889999999999986 66555555432 5555566665543
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHH--HHcCChHHHHHhhcCCCcccccccccc-----cCCCHHHHHHHHHHhh-
Q 000286 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTL--LHLGISGILKDILSGSGVSANSAVPPA-----LSRPAEQIFEIVNLAN- 315 (1720)
Q Consensus 244 ~~ls~~i~~~alr~L~nLas~s~~~t~~L--l~~gil~~L~~LL~~~~~~~~~~~s~i-----~~~~~~qi~~vi~li~- 315 (1720)
+...++..||.+|..++..-+.-.+.. +-.-+++.+..+++.......|.-+.. -..|...-..+++.++
T Consensus 261 --l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~ 338 (1075)
T KOG2171|consen 261 --LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL 338 (1075)
T ss_pred --ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh
Confidence 688999999999999887744433322 223355555555554332233332111 0113333344444322
Q ss_pred cc-----CCCCCCCCCCCCcccccccc------------CC-------cccCCC-CCCCCCCCCCCCCccchhhHHHhhc
Q 000286 316 EL-----LPPLPQGTISLPSSSNMFVK------------GP-------VVRKSP-ASSSGKQDDTNGNASEVSAREKLLS 370 (1720)
Q Consensus 316 ~L-----LP~L~~~~~s~~~~~~~~~~------------g~-------~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~ 370 (1720)
+| +|++.+-..-+-...+|..| |. +++--+ .-+ + =+.+..+.|-.-|.
T Consensus 339 ~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~-~------l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 339 HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN-G------LNDPHPRVRYAALN 411 (1075)
T ss_pred cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh-h------cCCCCHHHHHHHHH
Confidence 21 22222100000011122211 11 000000 000 0 00112233333332
Q ss_pred c--------CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCC-C
Q 000286 371 D--------QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-P 441 (1720)
Q Consensus 371 ~--------~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d-~ 441 (1720)
. .|+.-+.+=..+.|.|+....++-+..|...+-.++.+....++.+.|...+....=. .-.+|-+++ +
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~--~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEK--KLLLLLQSSKP 489 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--HHHHHhcCCch
Confidence 2 3554455556888899999999999999999999999999999998887544321111 122233333 4
Q ss_pred chHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 442 HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 442 ~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+.-.++..+-..-.-..+-|.++|.| +++.++.+..
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQ 526 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHh
Confidence 444445544444444555668888877 5777766654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00028 Score=89.03 Aligned_cols=409 Identities=16% Similarity=0.137 Sum_probs=235.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
+-+-++|++. |...+-.|+.++.-++..-++..+ .-.+.+.+|.++.+|.++ +..+...++|+|+-|++..|+.+..
T Consensus 367 ~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L-t~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 367 PFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL-TPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh-hHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhccc
Confidence 3344478776 888999999999998887655554 445678899999999955 5777789999999999999977765
Q ss_pred hc-ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-----------chhHHhhhhc---cCChHHHHHH
Q 000286 95 VV-HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-----------ALMAVLSYLD---FFSTGVQRVA 159 (1720)
Q Consensus 95 vV-~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-----------gL~~LL~lLd---~~~~~vqr~A 159 (1720)
.+ -.+.|+.|++-| .+++.++..|.|++.+++....++....| .+..|+..-+ -...+....|
T Consensus 444 ~~~l~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 33 556777777555 45678999999999999865554333331 1222222222 2334455556
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHH---------hhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCc
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTN---------LLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 226 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~---------LL~~~D----~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gl 226 (1720)
-.+|.-+.++.+......+.+..+.+.. .|...| .++....|.+|..|...+.+ .+..+.+. +
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~-i 597 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQ-I 597 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHHH-H
Confidence 7788888887777777777776666655 455555 35677788888888886433 33333332 5
Q ss_pred HHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHhhcCCCc--ccccccccccCCC
Q 000286 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL-CAKTLLHLGISGILKDILSGSGV--SANSAVPPALSRP 303 (1720)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~-~t~~Ll~~gil~~L~~LL~~~~~--~~~~~~s~i~~~~ 303 (1720)
+..+.+++.... +..+...++.+++.++..=.. -.+.+ .-+.|.|..-|+.... .++.++ .++..-
T Consensus 598 M~lflri~~s~~--------s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aV-glVgdl 666 (859)
T KOG1241|consen 598 MGLFLRIFESKR--------SAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAV-GLVGDL 666 (859)
T ss_pred HHHHHHHHcCCc--------cccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHH-HHHHHH
Confidence 677777887643 455777888888877643111 11111 2344555555543332 111111 110000
Q ss_pred HHHHH-HHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchh---hHHHhhccCHHHHHHH
Q 000286 304 AEQIF-EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVS---AREKLLSDQPELLQQF 379 (1720)
Q Consensus 304 ~~qi~-~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~pe~~~~f 379 (1720)
.+-+. .++-+..+++-.|....-+ |..++- -++..- .-+. -..-..+..|
T Consensus 667 ~raL~~~i~py~d~~mt~Lvq~Lss-~~~hR~-----------------------vKP~IlS~FgDIA--laIg~~F~~Y 720 (859)
T KOG1241|consen 667 ARALEDDILPYCDELMTVLVQCLSS-PNLHRN-----------------------VKPAILSVFGDIA--LAIGADFEPY 720 (859)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHccC-cccccc-----------------------ccchHHHHHHHHH--HHHHHhHHHH
Confidence 00000 0111112222222221110 100000 000000 0000 1123447788
Q ss_pred HHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHHhhcCCHHHHHHhhhccchH----HHHHHHhhcCC--Cch
Q 000286 380 GMDLLPVLIQIYGSSVNS----------PVRHKCLSVIGKLMYFSSAEMIQSLLSVTNIS----SFLAGVLAWKD--PHV 443 (1720)
Q Consensus 380 ~~~llP~L~~vy~ss~~~----------~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~is----s~la~il~~~d--~~l 443 (1720)
+..++|+|-++-+.-.+. .+|..||.+.--|+.-.... .+.....++. +||..|-.-.| ..+
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~--~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~ 798 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH--ADVMLVQPYVPHIISFIDRIAAEPDVSEAL 798 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc--cchhhhhcchHHHHHHHHHHhcCcccchHH
Confidence 889999998876333333 57888888877766443310 0112223444 44444433333 356
Q ss_pred HHhHHHHHHHHHhhCchhhhhhHHhhcH
Q 000286 444 LIPSLQIAEILMEKLPGTFSKMFVREGV 471 (1720)
Q Consensus 444 v~~aL~i~~~Ll~K~pd~f~~~f~REGV 471 (1720)
+-.|+-++--|..-+|+--.+.|.-+-.
T Consensus 799 ~~~a~GlIgDL~~~fg~~~~~~~~~~~~ 826 (859)
T KOG1241|consen 799 HAAALGLIGDLATMFGKGVIKLFLDEDW 826 (859)
T ss_pred HHHHHHHHHHHHHHcccchhhhhcchHH
Confidence 7789999999999988766666655433
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00023 Score=84.44 Aligned_cols=231 Identities=14% Similarity=0.101 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHhhccCC---cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHH
Q 000286 71 PDIMLLAARALTHLCDVLP---SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAV 144 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p---~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~L 144 (1720)
..+...++.|+.-++.... ..+..-+++|++..|. .+..+++.++-+|+..+|+|||-++.. ++++.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lr-q~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLR-QTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHH-hCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 3455566777777764221 1222347789999999 888999999999999999999988764 79999998888
Q ss_pred hhhhccC-------ChHHHHHHHHHHHHhccCC-CCchhHHHhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhcCCC
Q 000286 145 LSYLDFF-------STGVQRVALSTAANMCKKL-PSDAADFVMEAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAFASS 214 (1720)
Q Consensus 145 L~lLd~~-------~~~vqr~Al~aLsNlc~~~-~~~~~~~v~~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~~~~ 214 (1720)
+..|+.. .......+.-.+.|+.-.. .........+++|.|..++ ..++...-+..+..+.++..- -
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---~ 211 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---V 211 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---H
Confidence 8888742 1245666777889987744 4444455678999999995 455667777777777777764 3
Q ss_pred HHHHHH-HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000286 215 PDKLDE-LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSAN 293 (1720)
Q Consensus 215 ~~~~~~-li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1720)
.+++.. ..+..++..++++|... +.+.+...++.+|...+.. +.....+.+.|+++.++.++...+.-+
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~--------v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t- 281 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSM--------VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFT- 281 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHh--------hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhccccc-
Confidence 333333 44668899999999654 4677888888888887755 555667889999999999998765422
Q ss_pred cccccccCCCHHHHHHHHHHhhccCCCCCCC
Q 000286 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQG 324 (1720)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~ 324 (1720)
.++.-......+++++--|..|
T Consensus 282 ---------~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 282 ---------KKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred ---------chHHHHHHHHhhhhHhhhhhcC
Confidence 2233344445556665555444
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00066 Score=80.50 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHh
Q 000286 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVL 145 (1720)
Q Consensus 69 ~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL 145 (1720)
.+++=+..|.--|-.+++.. +++..++..|...+++ .+++..+..|++-|+|+|+.+++.+|. .|++.|++..|+
T Consensus 95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll-~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLL-GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHH-HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 35666667777777777644 6778899999999999 699999999999999999999999996 699999999999
Q ss_pred hhhcc-CChHHHHHHHHHHHHhccCCCCchhHH-HhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000286 146 SYLDF-FSTGVQRVALSTAANMCKKLPSDAADF-VMEAVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1720)
Q Consensus 146 ~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~-v~~~lP~L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l 221 (1720)
..|.. .+.++..+|+.+++.+.|+.++..... .......|..+|+. .+.+.+..|+..+.+|... +....+.+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d~~ 249 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---DKSDEDIA 249 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---hhhhhhHH
Confidence 99985 466788999999999999775443333 34569999999998 6789999999999999996 55555555
Q ss_pred HhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 222 CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 222 i~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
...+....++.+...- ...+...++..+..+
T Consensus 250 ~~~~f~~~~~~l~~~l---------~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSL---------DFEVNEAALTALLSL 280 (342)
T ss_pred HHhhhhHHHHHHhhcc---------chhhhHHHHHHHHHH
Confidence 5566666666666554 455666666655544
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0023 Score=81.09 Aligned_cols=269 Identities=15% Similarity=0.132 Sum_probs=193.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhccCC-
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH-ESNPDIMLLAARALTHLCDVLP- 89 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~-~~~~eiq~~AaraLtNL~~~~p- 89 (1720)
..++.|++.+.+..=++-+..|+..|- -++.. .+.-+....+++|++.|.. -.++++...|.-.++++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLK-a~srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLK-AFSRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHH-HHHHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 478899999965546777888888873 33321 1223445568899999973 4579999999999999986542
Q ss_pred -----cch----------h-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhh-hcCchhHHhhhh
Q 000286 90 -----SSC----------A-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACL-RAGALMAVLSYL 148 (1720)
Q Consensus 90 -----~~~----------~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il-~~GgL~~LL~lL 148 (1720)
+.+ . .+-..+-|..|+ ..++..+.-|+..+++.|.+|-+.-+. +++ .--||..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll-~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLL-QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHH-HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 222 1 133557788888 888999999999999999999765553 344 446999999999
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhccC---C-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHh
Q 000286 149 DFFSTGVQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQYH---D-AKVLEHASVCLTRIAEAFASSPDKLDELCN 223 (1720)
Q Consensus 149 d~~~~~vqr~Al~aLsNlc~~~~~~-~~~~v~~~lP~L~~LL~~~---D-~~V~e~A~~aLs~L~~~~~~~~~~~~~li~ 223 (1720)
+.....+.-.++..++-+.+..+.. ......+++..|..++..+ | .-|+++|+..+-+|... +..+.+.+.+
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~SNQ~~FrE 252 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NISNQNFFRE 252 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---CcchhhHHhc
Confidence 9766666666888888888866544 4555678999999998754 4 36889999999999985 6777777778
Q ss_pred CCcHHHHHHhhcCCCCCC----CCCCCChhHHHHHHHHHHHHhcCC-----HHHHH-HHHHcCChHHHHHhhcCCC
Q 000286 224 HGLVTQAATLISTSNSGG----GQASLSTPTYTGLIRLLSTCASGS-----PLCAK-TLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 224 ~gll~~Lv~LL~~~~~~~----~~~~ls~~i~~~alr~L~nLas~s-----~~~t~-~Ll~~gil~~L~~LL~~~~ 289 (1720)
.+-|++|..||....... ++..-....+..+|.++..+++-. ..+.+ .+..++++..|..+|.+..
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 889999999997542111 222222334666777777776532 23333 4555899999999999875
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00071 Score=92.93 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=145.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..++.|+..|.+. |+.++..|+..|.++- ...+++.|+..|+++ ++++...|+.+|..+.+..+
T Consensus 621 ~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 621 PSVAELAPYLADP-DPGVRRTAVAVLTETT------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC--
Confidence 4567888888776 9999999999998652 235799999999876 59999999999998865332
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
..+.|. .+|..+++.++..|+.+|+.+... ....++.+|...+..+++.|+++|..+-
T Consensus 685 --------~~~~L~-~~L~~~d~~VR~~A~~aL~~~~~~---------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 --------PAPALR-DHLGSPDPVVRAAALDVLRALRAG---------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred --------chHHHH-HHhcCCCHHHHHHHHHHHHhhccC---------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 246777 777889999999999999998532 2345778889999999999999998751
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
..+.|..+|.++|..|...++.+|..+... . ...++.|..++... ++.++
T Consensus 743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---~---------~~~~~~L~~ll~D~---------d~~VR 792 (897)
T PRK13800 743 ---------DVESVAGAATDENREVRIAVAKGLATLGAG---G---------APAGDAVRALTGDP---------DPLVR 792 (897)
T ss_pred ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc---c---------chhHHHHHHHhcCC---------CHHHH
Confidence 124577889999999999999999999763 1 12367788888776 57899
Q ss_pred HHHHHHHHHHhc
Q 000286 252 TGLIRLLSTCAS 263 (1720)
Q Consensus 252 ~~alr~L~nLas 263 (1720)
..++.+|+.+..
T Consensus 793 ~aA~~aLg~~g~ 804 (897)
T PRK13800 793 AAALAALAELGC 804 (897)
T ss_pred HHHHHHHHhcCC
Confidence 999999999854
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.01 Score=71.10 Aligned_cols=389 Identities=13% Similarity=0.086 Sum_probs=242.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhc---CCCC---HHHHHHHHHHHHHhhccCCc
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLN---HESN---PDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~---~~~~---~eiq~~AaraLtNL~~~~p~ 90 (1720)
|.+...|. |-.+..+..++|.++....++. ...|...|.-..++++|+ +.++ .+.-..+|..|.|..-++.+
T Consensus 92 Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~-R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~ 169 (604)
T KOG4500|consen 92 LRQTPSSP-DTEVHEQCFRALGNICYDNNEN-RAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE 169 (604)
T ss_pred HHhCCCCC-cccHHHHHHHHHhhhhccCchh-HHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH
Confidence 33344555 7888899999999888876543 345666666556666665 3333 45556888899999999888
Q ss_pred chhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcc-Cc---chhhhcCchhHHhhhhccC-ChHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQE-HP---TACLRAGALMAVLSYLDFF-STGVQRVALSTA 163 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~-~~---~~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aL 163 (1720)
....+++.|++|.|. .++.|.. ..+.|.++-...|+..- +. ....+....-.++++|... ...+-..+..++
T Consensus 170 l~aq~~~~gVl~tL~-~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 170 LRAQVADAGVLNTLA-ITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHhcccHHHHH-HHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 888999999999999 8888765 56667787777777542 11 2344555555666666532 334444566666
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHhCC-cHHHHHHhhcCCC
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAF---ASSPDKLDELCNHG-LVTQAATLISTSN 238 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~---~~~~~~~~~li~~g-ll~~Lv~LL~~~~ 238 (1720)
+..+.+..-.-.....+.+..+.++++. .|..-.+++..-+-++++-. -..++..+.+...+ +++.++.-+.+.
T Consensus 249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~- 327 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD- 327 (604)
T ss_pred HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC-
Confidence 6666554333222233456666666554 33322333333333333210 01345566677666 899999999876
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccC
Q 000286 239 SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELL 318 (1720)
Q Consensus 239 ~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LL 318 (1720)
+.+.++...-+|+|+++.++.. ..+++.++++.|..+|...+.. .|+-+..++++.-+.+|+
T Consensus 328 --------d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~v---------dgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 328 --------DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDV---------DGNVERQHACLSALRNLM 389 (604)
T ss_pred --------chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCC---------CccchhHHHHHHHHHhcc
Confidence 4668889999999999986655 5689999999999999764431 234444455555444554
Q ss_pred CCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHH
Q 000286 319 PPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1720)
Q Consensus 319 P~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~ 398 (1720)
-|.+... ++.. .+ . .+-++|.| ....+.
T Consensus 390 IPv~nka-------~~~~---------------------------------aG---v----teaIL~~l-----k~~~pp 417 (604)
T KOG4500|consen 390 IPVSNKA-------HFAP---------------------------------AG---V----TEAILLQL-----KLASPP 417 (604)
T ss_pred ccCCchh-------hccc---------------------------------cc---h----HHHHHHHH-----HhcCCc
Confidence 4433310 0000 00 0 11222222 223344
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHh-HHHHHHHHH--hhCchhhhhhHHhhcHHHHH
Q 000286 399 VRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIP-SLQIAEILM--EKLPGTFSKMFVREGVVHAV 475 (1720)
Q Consensus 399 VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~-aL~i~~~Ll--~K~pd~f~~~f~REGV~~~I 475 (1720)
|-.+-|. -+||+--+.+-.+.++.++.-.-.-|..+=.++|...|.+ .+.+..-|. .|+.|+....-+.-||-+.|
T Consensus 418 v~fkllg-TlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~V 496 (604)
T KOG4500|consen 418 VTFKLLG-TLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKV 496 (604)
T ss_pred chHHHHH-HHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHH
Confidence 4445443 4678877777788889999888788887777788665553 455544455 45778777776777777777
Q ss_pred HHHHh
Q 000286 476 DQLIL 480 (1720)
Q Consensus 476 ~~L~~ 480 (1720)
..+..
T Consensus 497 sm~t~ 501 (604)
T KOG4500|consen 497 SMFTK 501 (604)
T ss_pred HHHHH
Confidence 76654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=91.12 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=114.3
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...++.|+..|..+ |+.++..|+..|.++..... -.+.|...|+++ ++.++..|+.+|..+-.
T Consensus 651 ~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-----------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~---- 713 (897)
T PRK13800 651 PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-----------PAPALRDHLGSP-DPVVRAAALDVLRALRA---- 713 (897)
T ss_pred hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC-----------chHHHHHHhcCC-CHHHHHHHHHHHHhhcc----
Confidence 34567788888655 99999999999987743211 135677777764 57888888887777532
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+.++.|+ ++|..++..|+..|+++|+.|.. ...|+.++...+..+++.++.+|..+....
T Consensus 714 --------~~~~~l~-~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 714 --------GDAALFA-AALGDPDHRVRIEAVRALVSVDD-----------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred --------CCHHHHH-HHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 1233455 56677777777777777776521 123444555555555555555555554321
Q ss_pred CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc----------CC-CHHH----HHHHH---hCCcHHHHHH
Q 000286 171 PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF----------AS-SPDK----LDELC---NHGLVTQAAT 232 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~----------~~-~~~~----~~~li---~~gll~~Lv~ 232 (1720)
...++.|..+++.+|+.|...|+.+|..+...- .. ++.. .+.|- ....++.|+.
T Consensus 774 --------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~ 845 (897)
T PRK13800 774 --------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVE 845 (897)
T ss_pred --------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHH
Confidence 112455555555555555555555555443310 00 0000 00000 1135577777
Q ss_pred hhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 233 LISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 233 LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
+|... +..++..++++|+.+
T Consensus 846 ~L~D~---------~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 846 ALTDP---------HLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCC---------CHHHHHHHHHHHhcc
Confidence 77665 567888888888886
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.5e-05 Score=64.81 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=37.0
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
++++..++++|+||.|+ +|+.+.+.+++++|+|||+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv-~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLV-QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHH-HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHH-HHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788899999999999 99999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0067 Score=77.09 Aligned_cols=379 Identities=13% Similarity=0.145 Sum_probs=230.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCC------ccc-ccccc----------cCcHHHHHHhhcC------CCCHHHH
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTE------ESL-STFSV----------DSFAPVLVGLLNH------ESNPDIM 74 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~------~~l-~~~~~----------~g~Vp~LV~lL~~------~~~~eiq 74 (1720)
+...+++ +..+.++|+.--|.+...+.+ +.. ...++ ..++|.|+++|.. +++..+-
T Consensus 265 l~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 265 LAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 4556776 889999998887765543321 001 11221 2589999999964 2234567
Q ss_pred HHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccC
Q 000286 75 LLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF 151 (1720)
Q Consensus 75 ~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~ 151 (1720)
..|.-||.-++... ...||. -|=++++.=+..++-.-+|.++.|++-|-..... .-+..++++.++.++...
T Consensus 344 kAAg~CL~l~A~~~---~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCV---GDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred HHHHHHHHHHHHHh---cccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 78888888777532 223444 2334454566778888889999999988654332 345577899999999988
Q ss_pred ChHHHHHHHHHHHHhccCCCCch--hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC-HHH-HHHHHhCCcH
Q 000286 152 STGVQRVALSTAANMCKKLPSDA--ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS-PDK-LDELCNHGLV 227 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~--~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~-~~~-~~~li~~gll 227 (1720)
+..+.+.+.|++..+|...+... .......++.|..-| ++.++|..++||++.++++.+... ++. -....+.=..
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~ 497 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE 497 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH
Confidence 88999999999999999766332 222334455555544 356899999999999999863100 000 0000000011
Q ss_pred HHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHhhcCCCcccccccccc-cCCC
Q 000286 228 TQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL---GISGILKDILSGSGVSANSAVPPA-LSRP 303 (1720)
Q Consensus 228 ~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~---gil~~L~~LL~~~~~~~~~~~s~i-~~~~ 303 (1720)
.-+-.||...+-. .--..+.+..+..+|..|...+++-.-.++.. =++..|-+.+. +++ -..+
T Consensus 498 ~ii~~Ll~~tdr~---dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~----------~~~l~~~d 564 (859)
T KOG1241|consen 498 AIIGSLLKVTDRA---DGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS----------SQILSLAD 564 (859)
T ss_pred HHHHHHHhhcccc---ccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------HHhccHhh
Confidence 1222333332200 00135688899999999998887665444321 12222333332 111 1135
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHH
Q 000286 304 AEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDL 383 (1720)
Q Consensus 304 ~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~l 383 (1720)
.+|+.++=.++++.|-.+.... + + .+......|
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~-------------------~---------------------------~-~~~~~~d~i 597 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKV-------------------G---------------------------S-DIREVSDQI 597 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------------c---------------------------c-cchhHHHHH
Confidence 5666666555555544322210 0 0 123344677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh-hcCCCchHHhHHHHHHHHHhhCchhh
Q 000286 384 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL-AWKDPHVLIPSLQIAEILMEKLPGTF 462 (1720)
Q Consensus 384 lP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il-~~~d~~lv~~aL~i~~~Ll~K~pd~f 462 (1720)
+-+|+.+|.+.-..-|...++-++.-+++...+..++-. ..+.-||-.-| +..|..+...|.-++--|..-+.+.|
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym---~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i 674 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM---PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888889998855555788999999998887776665532 12334444445 45666677788888888888888877
Q ss_pred hhhH
Q 000286 463 SKMF 466 (1720)
Q Consensus 463 ~~~f 466 (1720)
.++-
T Consensus 675 ~py~ 678 (859)
T KOG1241|consen 675 LPYC 678 (859)
T ss_pred hhHH
Confidence 7753
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.007 Score=76.15 Aligned_cols=239 Identities=16% Similarity=0.120 Sum_probs=171.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
..++..|... ||+..+.|....++++..- .+.-..++..|.+|.|+.+++.++ .++++.+.+-++...+.+......
T Consensus 12 ~~~l~~L~~~-dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 12 LDLLYRLLHL-DPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHHhhhcC-CHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence 3456666666 8999999999998877754 444457899999999999998664 467776666666667778888888
Q ss_pred hhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCc--chhh---hcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 94 AVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHP--TACL---RAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~--~~Il---~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.+++++.+|.|. +|+...+ ..+.+.++.+|.+|-.-.+ ..+. ....+..+-.++....-.+++.-+..++++|
T Consensus 90 svL~~~~ll~Ll-~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s 168 (678)
T KOG1293|consen 90 SVLRIIELLKLL-QLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS 168 (678)
T ss_pred HHHHHhhHHHHH-HHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 999999999999 7777777 8999999999999954332 2222 2222333322223245566777888888999
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHhCCcHHH--HHHhhcCCCCCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD----KLDELCNHGLVTQ--AATLISTSNSGG 241 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~----~~~~li~~gll~~--Lv~LL~~~~~~~ 241 (1720)
....+.......++...+..++.+-..++...|+.|++|-+.-...++. ....+.+.|+.++ +.+|+...
T Consensus 169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~---- 244 (678)
T KOG1293|consen 169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP---- 244 (678)
T ss_pred ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC----
Confidence 8777666666788888888888888889999999999943322223544 3445556688874 44555554
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCC
Q 000286 242 GQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 242 ~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
..+.+...+.+|.+++.++
T Consensus 245 -----~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 245 -----DFSERLRSLECLVPYLRKS 263 (678)
T ss_pred -----CccHHHHHHHHHHHHHhcc
Confidence 3446688888888888777
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=85.12 Aligned_cols=214 Identities=17% Similarity=0.168 Sum_probs=144.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV------DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~------~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.++..+ + .+.+...-.+.-+.+++..... ....+.. ...+.+|+++|..+ +.-++..|+++|+.++...+
T Consensus 62 ~lL~~~-~-~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 62 NLLNKL-S-SNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHc-c-CcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCC
Confidence 344444 2 4788888899999998887543 1122222 23688888988877 59999999999999999877
Q ss_pred cchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhh-----cc--CChHHHH
Q 000286 90 SSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYL-----DF--FSTGVQR 157 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lL-----d~--~~~~vqr 157 (1720)
......+ .++++.+++-|-. +++.+++.-|+++|.++.+...- .+.+.|+++.+...| .. ....+|-
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 6555433 4677777733322 34566778999999999876553 688899999999999 22 3456666
Q ss_pred HHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcC
Q 000286 158 VALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST 236 (1720)
Q Consensus 158 ~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~ 236 (1720)
.++-|+.-++.+.+......-..++|.|..+++. .-.||+.-++.+|.|++.. .....+..++.+|+++.+-.|...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~--~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK--APKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS--SSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc--cHHHHHHHHHHccHHHHHHHHhcC
Confidence 7777777666655444444456699999999875 4789999999999999985 222388889999888777777654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.003 Score=78.33 Aligned_cols=269 Identities=17% Similarity=0.164 Sum_probs=184.6
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..+..++..|+.+ |..++..|+.-|+.+++-+... .......-++.-|...|+..++.+.+..|++||.+|+.. ++.
T Consensus 101 ~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~ 177 (429)
T cd00256 101 KTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEY 177 (429)
T ss_pred cchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chH
Confidence 4566777777765 8899999999999998865432 111111124556667777666688899999999999875 468
Q ss_pred hhhhcccccHHHHHHHHhcC-C-cHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTI-E-YMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~-~-~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNl 166 (1720)
+..+++++.|+.|+ .+|.. . ...++-+++-|+--+|-+... .....+.++.++.++.. ....+.|.++.++.|+
T Consensus 178 R~~f~~~~~v~~L~-~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 178 RFAFVLADGVPTLV-KLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHHHccCHHHHH-HHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888889999999 66654 2 568888777777777655442 34567889999999974 4678999999999999
Q ss_pred ccCCC----C--chhHHHh-CcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC-
Q 000286 167 CKKLP----S--DAADFVM-EAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS- 214 (1720)
Q Consensus 167 c~~~~----~--~~~~~v~-~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~----------------------~~~- 214 (1720)
+.... . ....++. ++++.|..+. +..|+++.++.-..-..|-..+ .|.
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 98431 1 1123344 4555555553 2468888776544433332221 121
Q ss_pred ----HHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 215 ----PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 215 ----~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
.++...+-+. .++..|+++|..++ ++.+..-|+.=||.+++.-|.-...+-+.|+=..+.+|+++.
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~--------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~ 408 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSV--------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE 408 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCC--------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC
Confidence 2445555544 38999999996543 344555677778999999888777666799999999999987
Q ss_pred Cccc
Q 000286 289 GVSA 292 (1720)
Q Consensus 289 ~~~~ 292 (1720)
++..
T Consensus 409 d~~V 412 (429)
T cd00256 409 DPNV 412 (429)
T ss_pred CHHH
Confidence 7533
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=87.73 Aligned_cols=238 Identities=18% Similarity=0.220 Sum_probs=163.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.+-..|++. +...+..||.+|+-+.-.+...... .-..+++..+..|++++ |.++..||-||.-|+...+...+
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~--~l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIG--NLPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHH--HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhhhcHHHH
Confidence 33444456776 9999999999998887766433222 33457888899999886 99999999999999998877776
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchhHHhhhh-ccCChHHHHHHHHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYL-DFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~ 169 (1720)
.--..-++|.|+..|-....+.++-.|.-||-|.+.++++.++. .+.+.+++.+| ...+..+|..++.+|+..+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 66655677788855555667899999999999999999987665 34445344444 466888999999999998875
Q ss_pred CCCchhHHHhCcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D----~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
....=..+..-++|.|.++|++.+ ..+.-++.-|++-|+... ..+.+. .....+++++.... ++...
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV-----Gke~F~--~~a~eliqll~~~~--~~~~~ 576 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV-----GKEKFL--PLAEELIQLLLELQ--GSDQD 576 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh-----hhhhhh--HhHHHHHHHHHhhc--ccchh
Confidence 444444456778999999998765 334445556766666531 111221 12333444443221 11222
Q ss_pred CChhHHHHHHHHHHHHhcC
Q 000286 246 LSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~ 264 (1720)
.+.....-.+...++||+.
T Consensus 577 ~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 577 DDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 3444566667777777753
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=75.32 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=148.9
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+....+|..||+.|... |.++-.....-|..+.-. .++...+++.|+|..|+ +|..++.+|++...+..|-|+|-+
T Consensus 299 KMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~-klfp~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL-KLFPIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH-HhcCCCCHHHHHHHHHHhhhcccc
Confidence 466778999999999866 578777777777776543 46777888999999999 999999999999999999999998
Q ss_pred Ccc--hhhhcCchhHHhhhhccCChHHHHHHHHHH------------------------------------------HHh
Q 000286 131 HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTA------------------------------------------ANM 166 (1720)
Q Consensus 131 ~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aL------------------------------------------sNl 166 (1720)
... ..+..|-+|.+..+|+..+-+ ..|+.++ .|+
T Consensus 376 ~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 376 SGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL 453 (791)
T ss_pred ccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 775 688999999999999753321 1122222 344
Q ss_pred ccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
|.+....+..+.-..+..|... +++.|.-+.. .+.+|.. |.......+++ .|.-|...+...+
T Consensus 454 ~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK----~vRniSq---Heg~tqn~Fid--yvgdLa~i~~nd~------- 517 (791)
T KOG1222|consen 454 CLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMK----VVRNISQ---HEGATQNMFID--YVGDLAGIAKNDN------- 517 (791)
T ss_pred HhccccceEEecCcchHHHHHHHhcccchHHHH----HHHHhhh---ccchHHHHHHH--HHHHHHHHhhcCc-------
Confidence 4444333333333344444444 4555543322 2334443 12223333333 3555666666654
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+......|+.+|+|+.-.+-.-.+.|-+.+++|.+.+.|....
T Consensus 518 -~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga 560 (791)
T KOG1222|consen 518 -SESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA 560 (791)
T ss_pred -hHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc
Confidence 5667888999999998877777787778899999999887544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0061 Score=76.14 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC--chhHHhhhhccCChHHHHHHHHHHHHhccCC-CCchhHH
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCKKL-PSDAADF 177 (1720)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~-~~~~~~~ 177 (1720)
.|.|- ..|.++.=-++|.++-|||-||..+-+-++..= .++.++++|+....-+.+..+|+++...... .......
T Consensus 395 ~PlLk-~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~ 473 (885)
T KOG2023|consen 395 LPLLK-EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY 473 (885)
T ss_pred HHHHH-HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh
Confidence 44444 777778889999999999999988776544432 5688888999989999999999999988843 2223345
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
...++..|.+.+-..+++|+|.||.+++-+-+.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 566666666667788999999999999988875
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.028 Score=67.84 Aligned_cols=352 Identities=14% Similarity=0.172 Sum_probs=213.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc------ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV------HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV------~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+..++.+|...+..+....+.--+.-|...++.-...+- ..-.-+.++ .||.-.+.=+.++..|.|..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl-~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFL-NLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHH-HHHhcCChHHHHHHHHHHHHHHH
Confidence 47899999998776666555544445555544332222211 112355667 78888888889999999999986
Q ss_pred cCcchhhhcCchhHHhhhhc----c-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh--ccCCHHHHHHHHH
Q 000286 130 EHPTACLRAGALMAVLSYLD----F-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL--QYHDAKVLEHASV 202 (1720)
Q Consensus 130 ~~~~~Il~~GgL~~LL~lLd----~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL--~~~D~~V~e~A~~ 202 (1720)
-.. ..+..+.+..+..+|. . .+....-.|+.|+.-+.+-.+....-...+.+..|+..| ++.+-.++-+.|.
T Consensus 144 ~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 FGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred hcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 544 2233334444444442 2 344455567888888888666655445566677777776 3447788888999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH------HHHHHHHHcC
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP------LCAKTLLHLG 276 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~------~~t~~Ll~~g 276 (1720)
|+--|+- ++...+.+...++++.|..++.++- ...+..-++.++.|++...+ +....++.++
T Consensus 223 ciWlLtF----n~~~ae~~~~~~li~~L~~Ivk~~~--------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~ 290 (442)
T KOG2759|consen 223 CIWLLTF----NPHAAEKLKRFDLIQDLSDIVKEST--------KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK 290 (442)
T ss_pred HHHHhhc----CHHHHHHHhhccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Confidence 9888886 6777788878899999999998762 45677777888889998874 6778899999
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
+++++..|... .|+ .+.|.+-|+++.+-|-.-.....+.+-|...+..|.+++.+.. +.+
T Consensus 291 v~k~l~~L~~r-----kys--------DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H----k~e--- 350 (442)
T KOG2759|consen 291 VLKTLQSLEER-----KYS--------DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH----KSE--- 350 (442)
T ss_pred chHHHHHHHhc-----CCC--------cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc----ccc---
Confidence 99999888763 221 1222222222222111111111111112222233555543320 000
Q ss_pred CCccchhhHHHhhccCHHHHHHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHH
Q 000286 357 GNASEVSAREKLLSDQPELLQQFG---MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLA 433 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~---~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la 433 (1720)
.+-.++ +.+|. -.|+-+|+.+..++.++.|=.-++.-|--.|-+...- +.++....--.-+.
T Consensus 351 ----------~FW~eN---a~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g--k~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 351 ----------KFWREN---ADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG--KAVVEKYGGKERVM 415 (442)
T ss_pred ----------chHHHh---HHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH--hHHHHHhchHHHHH
Confidence 011111 22222 2677788888888888754433333344444333221 23344445556677
Q ss_pred HHhhcCCCchHHhHHHHHHHHHh
Q 000286 434 GVLAWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 434 ~il~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
.+++++|+.+-..||+.+..||-
T Consensus 416 ~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 416 NLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhcCCCchHHHHHHHHHHHHHh
Confidence 88999999999999999999984
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=75.58 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=123.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCC-Cccccccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 22 RADGEEGKQVEALTQLCEMLSIGT-EESLSTFS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~-~~~l~~~~--~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
..+.|-..+.+|+..|+.++.... ......+. ...++..++..+.+. ...+...||.+|..|+..........+ .
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 455689999999999999998761 11111111 124556677777644 467888999999999987766655554 3
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC--Cch
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDA 174 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~ 174 (1720)
..+|.|+ +++.....-+++.|..||..|....+ ..++ +..+...+.+.+..+...++..+..+....+ ...
T Consensus 94 ~~l~~Ll-~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILLPPLL-KKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHH-HGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHH-HHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 5889999 78788888999999999999998665 2221 4455556677788888889988888888655 222
Q ss_pred hH---HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 175 AD---FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 175 ~~---~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
+. .+..+++.|...+...+++|.+.|-.++..+... -++..+.++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~---~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH---FPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH---H-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCHhhccch
Confidence 22 2467899999999999999999999999888775 444444444
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0053 Score=77.20 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhh
Q 000286 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSY 147 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~l 147 (1720)
.+....||-|+.+++..-..-....-...++.+|+ +|+.-+..-+.-.++.+|.|+--+..+ ..++.||+..++.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv-qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV-QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH-HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 33444555555555432111122244556788899 888889999999999999999987665 69999999999999
Q ss_pred hccCChHHHHHHHHHHHHhccCCC-CchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-
Q 000286 148 LDFFSTGVQRVALSTAANMCKKLP-SDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH- 224 (1720)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~- 224 (1720)
+..++..+..+++|++.++.-+.. ...+...+. ....|..+++.+|..|++++...+.|++.+ ..+.++-+++.
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~---~~~svdfll~~~ 546 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN---SRKSVDFLLEKF 546 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC---cHHHHHHHHHhh
Confidence 999999999999999999988653 333333333 356677888999999999999999999997 77788888765
Q ss_pred -CcHHHHHHhh
Q 000286 225 -GLVTQAATLI 234 (1720)
Q Consensus 225 -gll~~Lv~LL 234 (1720)
.++..+.-.+
T Consensus 547 ~~~ld~i~l~l 557 (678)
T KOG1293|consen 547 KDVLDKIDLQL 557 (678)
T ss_pred hHHHHHHHHHH
Confidence 3444544444
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.005 Score=75.50 Aligned_cols=414 Identities=15% Similarity=0.154 Sum_probs=230.1
Q ss_pred chHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhc-CCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 12 GRLKKILSGL-RADGEEGKQVEALTQLCEMLSI-GTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 12 ~~l~~Ll~~L-~s~~D~~~ql~Al~~L~~lL~~-~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.-+-.++.+- +.+.+...++.||.+|-.-|-. .++-. ..--..=+....++.-+.+ +.++|..|-.||..|+.-.-
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~-~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFC-YEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhc-chhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 3444678889998888763321 11100 0011112455666666666 49999999999999987665
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hh-----------------hhcCchhHHhhhhcc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--AC-----------------LRAGALMAVLSYLDF 150 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~I-----------------l~~GgL~~LL~lLd~ 150 (1720)
.......+ .++-.|.-+.+.+++.+++-|++.--.-||.+..+ .. --...+|-+|.+|..
T Consensus 254 ~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 254 KFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 55554444 56666666889999999999999887777765332 10 013378888998843
Q ss_pred C---------ChHH-HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 000286 151 F---------STGV-QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDE 220 (1720)
Q Consensus 151 ~---------~~~v-qr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~ 220 (1720)
. ++++ --.|+...+.+|.+ .+++.++..+-.-+++++-.=.+.|..+|..+.++ ...+.+-.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p~~~~lT~ 404 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGD------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--PCEDCLTK 404 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhh------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--ccHHHHHh
Confidence 1 2222 22344445555543 23555677777778999999999999999999997 44555555
Q ss_pred HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cC-ChHHHHHhhcCCC---c---cc
Q 000286 221 LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LG-ISGILKDILSGSG---V---SA 292 (1720)
Q Consensus 221 li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~-~g-il~~L~~LL~~~~---~---~~ 292 (1720)
++ +.++|-+..++..+ +.-++....||++.|+.. .-.+|+ ++ +......+|.|-. . .+
T Consensus 405 ~V-~qalp~i~n~m~D~---------~l~vk~ttAwc~g~iad~----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 405 IV-PQALPGIENEMSDS---------CLWVKSTTAWCFGAIADH----VAMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred hH-HhhhHHHHHhcccc---------eeehhhHHHHHHHHHHHH----HHHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 55 45788888888754 345778889999999864 223344 44 3344444444421 1 45
Q ss_pred ccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccC
Q 000286 293 NSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 372 (1720)
Q Consensus 293 ~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 372 (1720)
+|+..++ .+|+..+.+-....|-+. ++++...+.+|+-. + ..+...|..++..=
T Consensus 471 sw~~~nl----v~h~a~a~~~~~S~l~~f------Y~ai~~~Lv~~t~~-~---------------~Ne~n~R~s~fsaL 524 (858)
T COG5215 471 SWRKENL----VDHIAKAVREVESFLAKF------YLAILNALVKGTEL-A---------------LNESNLRVSLFSAL 524 (858)
T ss_pred HHHHHhH----HHhhhhhhccccchhHHH------HHHHHHHHHHHHHh-h---------------ccchhHHHHHHHHH
Confidence 6665432 233333332000000000 00011111111100 0 01233455444332
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHH
Q 000286 373 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAE 452 (1720)
Q Consensus 373 pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~ 452 (1720)
-.++..--..+.|++..+|.-+..- =-.|...+-.+..-=+...++++. .++...|+.|+...-+++--.+=|+.+
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~k--l~~~isv~~q~l~~eD~~~~~elq--SN~~~vl~aiir~~~~~ie~v~D~lm~ 600 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKK--LDECISVLGQILATEDQLLVEELQ--SNYIGVLEAIIRTRRRDIEDVEDQLME 600 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 2222111134456666665443221 123444444444332333333333 367788888887655544444444444
Q ss_pred HHHhhCchhhhhhHHhhcHHHHHHHHHhc
Q 000286 453 ILMEKLPGTFSKMFVREGVVHAVDQLILA 481 (1720)
Q Consensus 453 ~Ll~K~pd~f~~~f~REGV~~~I~~L~~~ 481 (1720)
++++-+... .+.|..+-|+..|..|+..
T Consensus 601 Lf~r~les~-~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 601 LFIRILEST-KPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHhcc-CCchhhhHHHHHHHHHHHH
Confidence 444444333 6788999999999999875
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.016 Score=69.78 Aligned_cols=266 Identities=17% Similarity=0.173 Sum_probs=188.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
....+..|... |..++-.+.+-++++.+.++.. +....-.=...-|...|++.++++-...|+|||--++.. ++.+.
T Consensus 116 ~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHHHHHhcC-ChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 45566677665 8888887889998888877532 111111113445566667666788888999999998875 57888
Q ss_pred hhcccccHHHHHHHHh-cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL-~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~ 169 (1720)
.+|.+..+..|+..|. ......++-|.+-|+-.++-..+- .+-..+.++.|...+.. ....+.|.++.++.|+|.+
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999899999994442 334588888877777777654442 35666788888888875 4678999999999999997
Q ss_pred CCCc------hhHHH-hCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC----
Q 000286 170 LPSD------AADFV-MEAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS---- 214 (1720)
Q Consensus 170 ~~~~------~~~~v-~~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~----------------------~~~---- 214 (1720)
.+.. ...++ .++.+.+..|. .+.|++++++.-..-..|.+.. .|.
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6411 12233 35666666664 3678888877665555554431 011
Q ss_pred -HHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 215 -PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 215 -~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
.++...+.+. .++..|+.+|..++ ++.+..-|+.=|+..++..|+....+.+-|+=+.+..||+++++
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~--------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSN--------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCC--------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 2455556644 48999999998764 45566677888999999999998888889999999999999876
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.24 Score=63.43 Aligned_cols=329 Identities=18% Similarity=0.215 Sum_probs=194.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
-+-.+|.+.|.+. |.+.+.+|+..+-.+++.++. +| +++-.++++.--..+-+++ +.|+++.+..|..
T Consensus 20 ~~~~~ik~~Lek~-~~~~KIeamK~ii~~mlnGe~-----~p--~Llm~IiRfvlps~~~elK----KLly~ywE~vPKt 87 (948)
T KOG1058|consen 20 MSEDEIKEKLEKG-DDEVKIEAMKKIIALMLNGED-----LP--SLLMTIIRFVLPSRNHELK----KLLYYYWELVPKT 87 (948)
T ss_pred cchHHHHHHHhcC-ChHHHHHHHHHHHHHHHcCCC-----ch--HHHHHHhheeeccCchHHH----HHHHHHHHHcccc
Confidence 3445677888876 778899999988888777643 11 1333333333222345666 3556665554432
Q ss_pred hh--hhcccccHHHHHH---HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 92 CA--AVVHYGAVTCFVA---RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~--~vV~~GaVp~Lv~---kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
.. .+.. .. =.+|+ +=|++++.-++-..+.-|+++ ....++ ..-++.+.+.|++...-+.|+|+.|+..+
T Consensus 88 ~~dgkl~~-EM-ILvcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELl-epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 88 DSDGKLLH-EM-ILVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELL-EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred CCCcccHH-HH-HHHHHHHhhhccCchHhhcchhhhhhhhc---CcHHHh-hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 22 0100 00 01121 335667777776555555544 222233 34678888899999999999999999888
Q ss_pred ccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
-++. ...+.++-..+... +...|+.+..+|...|..+- +++. +.-|...+.. -++
T Consensus 162 yk~~----~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D------~ErA--------l~Yl~~~idq------i~~ 217 (948)
T KOG1058|consen 162 YKNF----EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD------PERA--------LNYLLSNIDQ------IPS 217 (948)
T ss_pred Hhhh----hhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC------HHHH--------HHHHHhhHhh------ccC
Confidence 7651 12345555555555 45679999998877664332 2221 1111111110 122
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc----cccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS----ANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~----~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
++...+..++..+...|-.++...... +.+|+.+|+..... +..++.. +...++-+....+-+..|+-..
T Consensus 218 ~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~-lS~~p~alk~Aa~~~i~l~~ke 291 (948)
T KOG1058|consen 218 FNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVT-LSNDPTALKAAASTYIDLLVKE 291 (948)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEE-ccCCHHHHHHHHHHHHHHHHhc
Confidence 456677777888888887777654444 45889999877542 2222211 3345555655555344444433
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVR 400 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~pe~~~~f~~~llP~L~~vy~ss~~~~VR 400 (1720)
.++- .+-....|..-++. +...++-++.+++++| ++.|.+||
T Consensus 292 sdnn--------------------------------vklIvldrl~~l~~~~~~il~~l~mDvLrvL-----ss~dldvr 334 (948)
T KOG1058|consen 292 SDNN--------------------------------VKLIVLDRLSELKALHEKILQGLIMDVLRVL-----SSPDLDVR 334 (948)
T ss_pred cCcc--------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc-----CcccccHH
Confidence 3311 11233455555543 4445677777777766 78999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHhhhc
Q 000286 401 HKCLSVIGKLMYFSSAEMIQSLLSV 425 (1720)
Q Consensus 401 ~~~L~~l~r~v~~~~~~~L~~~l~~ 425 (1720)
+|||...+.+++.-+-+.+..+++.
T Consensus 335 ~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 335 SKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHH
Confidence 9999999999999998877666554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.18 Score=63.73 Aligned_cols=376 Identities=19% Similarity=0.188 Sum_probs=202.3
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 14 LKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++.+++.|..+++. ......+..|+++.. ++.+ ..+.. .++..|...++.+.+.+....++.+|.++++...+
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~---~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALST---SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHC---ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 46788888655222 334444455544433 3322 22222 44444444444444677888999999999876544
Q ss_pred ch---h--hhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---------c
Q 000286 91 SC---A--AVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---------F 150 (1720)
Q Consensus 91 ~~---~--~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---------~ 150 (1720)
.. . ...+..+||.|.+..+.... ..+.+.+...+..|.+.-+.. -+...+..+..++- .
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~-~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPE-KQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHccccccCCCCc
Confidence 44 1 22333488888844444322 344444555555555443321 00011222222221 0
Q ss_pred CC--h-HHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000286 151 FS--T-GVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1720)
Q Consensus 151 ~~--~-~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g 225 (1720)
.. . ..++..+.....+....+ ...+....+.+..+..+ +...++.+...++.+++-|+..+.. .+.++.++
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l~~~l--- 231 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDLDEFL--- 231 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhHHHHH---
Confidence 11 1 244454444444433222 22222344577777777 5566788999999999999986422 23333333
Q ss_pred cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH-hcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCH
Q 000286 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC-ASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304 (1720)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL-as~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~ 304 (1720)
..+..-+... .+.......+.-.+|+.--+ .++++...+ + +..|..+|.+... .
T Consensus 232 --~~~~~~~~~~----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~-~-----~~~L~~lL~~~~~--g----------- 286 (415)
T PF12460_consen 232 --DSLLQSISSS----EDSELRPQALEILIWITKALVMRGHPLATE-L-----LDKLLELLSSPEL--G----------- 286 (415)
T ss_pred --HHHHhhhccc----CCcchhHHHHHHHHHHHHHHHHcCCchHHH-H-----HHHHHHHhCChhh--H-----------
Confidence 3333333111 12223444555555555544 345444322 2 3356666665111 0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHH
Q 000286 305 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 384 (1720)
Q Consensus 305 ~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~ll 384 (1720)
..+..... -|+-.. ++..+ + ..-..++ +=.-|+|...++
T Consensus 287 ~~aA~~f~---il~~d~-~~~l~--------------~------------------~~~a~vk-----lLykQR~F~~~~ 325 (415)
T PF12460_consen 287 QQAAKAFG---ILLSDS-DDVLN--------------K------------------ENHANVK-----LLYKQRFFTQVL 325 (415)
T ss_pred HHHHHHHh---hHhcCc-HHhcC--------------c------------------cccchhh-----hHHhHHHHHHHH
Confidence 11111111 111100 00000 0 0000001 112378889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000286 385 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1720)
Q Consensus 385 P~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~ 464 (1720)
|.|++-|.++.+. +|..+|.|+.-++.+++.+.+..=+. .+-.++..-|...|..+...+|++...+++..|+++..
T Consensus 326 p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 326 PKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999987665 99999999999999999887664332 24455666678888899999999999999999998888
Q ss_pred hHH
Q 000286 465 MFV 467 (1720)
Q Consensus 465 ~f~ 467 (1720)
++.
T Consensus 403 hl~ 405 (415)
T PF12460_consen 403 HLS 405 (415)
T ss_pred HHH
Confidence 665
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=60.04 Aligned_cols=87 Identities=28% Similarity=0.341 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.|++.|..+.|+.++..|+..|++ +....++|.|+++|+++ ++.++..|+++|..|-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------------~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------------LGDPEAIPALIELLKDE-DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------------CTHHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence 57899999555699999999999972 22336799999999765 6999999999999883
Q ss_pred hhcccccHHHHHHHHhcC-CcHHHHHHHHHHHH
Q 000286 94 AVVHYGAVTCFVARLLTI-EYMDLAEQSLQALK 125 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~ 125 (1720)
+..+++.|+ +++.. ....+++.|+++|+
T Consensus 60 ---~~~~~~~L~-~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALI-KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHH-HHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHH-HHHcCCCcHHHHHHHHhhcC
Confidence 234889999 55554 56677999999985
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.41 Score=61.27 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
..++..|++. -|+++..|+-.|-++.+.-.+ .+ ....|+|++=|.+++ |.+|..|+-+++-++.-+|.+.
T Consensus 147 ~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPe-Al-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 147 DDVFTLLNSS-KPYVRKKAILLLYKVFLKYPE-AL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhhH-hH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence 4455555544 555555555555555554432 11 122455555555543 5555555555555555555443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0067 Score=72.62 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=128.3
Q ss_pred ccccCcHHHHHHhhcCCCCHH--HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 52 FSVDSFAPVLVGLLNHESNPD--IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~e--iq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
+-.+|.+..|++++..+. .+ +..+|++.|-.+.. .++...|+.-| ...+++.--.....+++..++..|+++-.
T Consensus 176 iR~~~~lD~Llrmf~aPn-~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPN-LETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 445678889999998763 44 47799999998876 35677787776 44444233345678999999999999988
Q ss_pred cCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000286 130 EHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 130 ~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aL 204 (1720)
++.. .++..|+|.+++....-.++.+.|+|+.++.||+-.- ....-.+.+.+-..|..|-.+.|.-..-.||.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 7665 5889999999999998889999999999999998733 2222233345666777777777888899999999
Q ss_pred HHHHhhcCCCHHHHHHHHhCC---cHHHHHHhh
Q 000286 205 TRIAEAFASSPDKLDELCNHG---LVTQAATLI 234 (1720)
Q Consensus 205 s~L~~~~~~~~~~~~~li~~g---ll~~Lv~LL 234 (1720)
+-|+.. .+--..+-..| +++.++..+
T Consensus 332 ~vlat~----KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 332 AVLATN----KEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred hhhhhh----hhhhHHHhhccchhhhhhhhhcc
Confidence 999973 33333344444 444444444
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0035 Score=60.61 Aligned_cols=87 Identities=28% Similarity=0.331 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1720)
||.|++.|..+.++.++..|+++|+++-. ..++|.|+ .++..++..++.+|+++|+.|- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~-~~l~d~~~~vr~~a~~aL~~i~--------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALI-ELLKDEDPMVRRAAARALGRIG--------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHH-HHHTSSSHHHHHHHHHHHHCCH--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHH-HHHcCCCHHHHHHHHHHHHHhC--------C
Confidence 68999999555679999999999995532 14799999 7889999999999999999994 2
Q ss_pred cCchhHHhhhhccC-ChHHHHHHHHHHH
Q 000286 138 AGALMAVLSYLDFF-STGVQRVALSTAA 164 (1720)
Q Consensus 138 ~GgL~~LL~lLd~~-~~~vqr~Al~aLs 164 (1720)
...++.|..++... +..+++.|+++|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34788888888764 4556778888774
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.007 Score=75.65 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=119.3
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch----hhh---cCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA----CLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~----Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
.+|.|| .||++++....|-|..||.+|+.|++.. +.. .-.++.+++|..+.++.+...|+.|+....-..+.
T Consensus 129 lLp~L~-~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 129 LLPQLC-ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred HHHHHH-HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 589999 9999999999999999999999987752 221 22578888899999999999999999887766666
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPT 250 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i 250 (1720)
.-...+-..+..|..+-+.+|++|..+.|.+|..|.+- .++ .++-+ ++++-+++..... +.++
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev---r~d---kl~phl~~IveyML~~tqd~---------dE~V 272 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV---RPD---KLVPHLDNIVEYMLQRTQDV---------DENV 272 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh---cHH---hcccchHHHHHHHHHHccCc---------chhH
Confidence 66667778899999999999999999999999999985 444 44433 3555555544443 5778
Q ss_pred HHHHHHHHHHHhcCC
Q 000286 251 YTGLIRLLSTCASGS 265 (1720)
Q Consensus 251 ~~~alr~L~nLas~s 265 (1720)
-..|+.....+|...
T Consensus 273 ALEACEFwla~aeqp 287 (885)
T KOG2023|consen 273 ALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHhcCc
Confidence 889999999998775
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.056 Score=69.71 Aligned_cols=381 Identities=17% Similarity=0.143 Sum_probs=216.2
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.+..+-..|.+. -+..+.+|++ +++..++- ..-..++-|.+++++.-.+ .+++...=-=|.|++.+.|+.
T Consensus 13 ~ei~elks~l~s~-~~~kr~~a~k---kvIa~Mt~----G~DvSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQ-SKEKRKDAVK---KVIAYMTV----GKDVSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhchHHHHHhhhh-hhhhHHHHHH---HHHhcCcc----CcchHhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchH
Confidence 4566777777554 3466666654 44444321 2345678899999998764 888888777888888887755
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
+. ++|..++ +=-..+++.++--|+.+++-|--+ .++ .....+|+..++....-+++.|+-+++++-.-
T Consensus 84 a~-----~avnt~~-kD~~d~np~iR~lAlrtm~~l~v~---~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-- 151 (734)
T KOG1061|consen 84 AI-----LAVNTFL-KDCEDPNPLIRALALRTMGCLRVD---KIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-- 151 (734)
T ss_pred HH-----hhhhhhh-ccCCCCCHHHHHHHhhceeeEeeh---HHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--
Confidence 43 4677777 555566677887777777655322 222 23567888888989999999999998887652
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
..+.....+.++.|..++...|+.|+.+|+.+|..|.+. +++..-..+..-++..++..|... ..--+
T Consensus 152 ~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~---~~~~~~~~l~~~~~~~lL~al~ec---------~EW~q 219 (734)
T KOG1061|consen 152 DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES---HPSVNLLELNPQLINKLLEALNEC---------TEWGQ 219 (734)
T ss_pred ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh---CCCCCcccccHHHHHHHHHHHHHh---------hhhhH
Confidence 234445678999999999999999999999999999996 443222222333444555555433 23345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccc--------------------------cccccCCCHH
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA--------------------------VPPALSRPAE 305 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~--------------------------~s~i~~~~~~ 305 (1720)
..++.++.+-...++.-++.+++ .+...|.+........ ...++...++
T Consensus 220 i~IL~~l~~y~p~d~~ea~~i~~-----r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e 294 (734)
T KOG1061|consen 220 IFILDCLAEYVPKDSREAEDICE-----RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE 294 (734)
T ss_pred HHHHHHHHhcCCCCchhHHHHHH-----HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch
Confidence 55566665555444433333332 3333333322211110 0011222221
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhc--cCHHHHHHHHHHH
Q 000286 306 QIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLS--DQPELLQQFGMDL 383 (1720)
Q Consensus 306 qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~pe~~~~f~~~l 383 (1720)
.-+-+++=|.-++-..++ ++.+. +...| +..-.| -. ....+.+++. .+.+-+++ +
T Consensus 295 ~qyvaLrNi~lil~~~p~-~~~~~-~~~Ff----~kynDP------------iY-vK~eKleil~~la~~~nl~q----v 351 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPE-ILKVE-IKVFF----CKYNDP------------IY-VKLEKLEILIELANDANLAQ----V 351 (734)
T ss_pred hhHHHHhhHHHHHHhChH-HHHhH-hHeee----eecCCc------------hh-hHHHHHHHHHHHhhHhHHHH----H
Confidence 111112212222222222 11000 00000 000000 00 0011222221 13333333 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhh
Q 000286 384 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 462 (1720)
Q Consensus 384 lP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f 462 (1720)
++=|. .|..-++.+.-+++++||.++---.... +..++.||..+ ..+-..++.-+...++.++.|+|..|
T Consensus 352 l~El~-eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell-~~~~~yvvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 352 LAELK-EYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELL-ETKVDYVVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred HHHHH-HhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHH-hhcccceeeehhHHHHhhhhcCCCch
Confidence 34333 4888899999999999999865433322 33455555553 34445577788899999999999866
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.25 Score=62.85 Aligned_cols=233 Identities=10% Similarity=0.109 Sum_probs=145.2
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCC-HHHHHHHHHHHHHhhccC-
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESN-PDIMLLAARALTHLCDVL- 88 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~-~eiq~~AaraLtNL~~~~- 88 (1720)
...+..+|..|+++ .+..+...+..+.++...-..--+..-....++..++--++..+. ..+++...-++.|-..+-
T Consensus 715 ~~~v~R~v~~lkde-~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDE-PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred hHHHHHHhhhhccc-cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc
Confidence 45678889999887 554455555666666554222112222333455555555554332 335555555555554431
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--hhhhcCchhHHhhhhccCChHHHHHHHHHH
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
..+... ++..++ ++|.....+++.||+..++.|+.- +.. .+-..|. .|..+|+...+++.-..+-++
T Consensus 794 kpylpq-----i~stiL-~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 794 KPYLPQ-----ICSTIL-WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred ccchHH-----HHHHHH-HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHH
Confidence 001111 334445 778899999999999999998742 222 2223333 355677777777665544444
Q ss_pred HHhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 164 ANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 164 sNlc~~~~-~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
..++.... ...+.-+++++|.|..+|.+...+|++++...+..||+. .++.+..-----++-.|+++|...
T Consensus 866 kaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr---gpE~v~aREWMRIcfeLlelLkah----- 937 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR---GPEYVSAREWMRICFELLELLKAH----- 937 (1172)
T ss_pred HHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHHHHHH-----
Confidence 44443221 112233788999999999999999999999999999996 666433222224677788888765
Q ss_pred CCCCChhHHHHHHHHHHHHhcC
Q 000286 243 QASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas~ 264 (1720)
+..+...+...++.|+..
T Consensus 938 ----kK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 938 ----KKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ----HHHHHHHHHhhhhHHHHh
Confidence 578999999999998753
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0034 Score=64.43 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=113.8
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~ 176 (1720)
+-+..|+.......+++-+||.+.-|.|.+-|..+ .+.+..+|...+.-|...+......++..++|+|-......+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 45778888888999999999999999999999887 4678889999898888888889999999999999988888888
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~L 233 (1720)
...+.+|.+...|.+....++-.|+.++..|+.+ .....+.+....++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~---~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG---ERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc---ccchhHHhccHHHHHHHHHH
Confidence 8889999999999999999999999999999997 66677777766555554443
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.045 Score=66.24 Aligned_cols=257 Identities=12% Similarity=0.079 Sum_probs=169.2
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++-+.+|+...... +++.....+.-|-++--.+... ..++..|++|.|+.+|.++.. .-.|...|+.|.. ..+
T Consensus 344 ~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr--~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~-dD~ 416 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLR--PKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSC-DDD 416 (791)
T ss_pred ccHHHHHHHhcCCC-CHHHHHHHHHHhhhcccccccc--HHHhhccchHHHHHHhCCccc---chhhhhhhhhhcc-CcH
Confidence 45567777777776 7887766665554433333222 458899999999999986531 1134445555554 456
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
....+....+||.|+..++.....++--..+...-|||.+..+ .|.+..|+..|+..--.+...+ .+..+.|+..
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSq 493 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhh
Confidence 6777888899999998888888776666566666788865554 5777778877765432222222 2445667776
Q ss_pred CCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCC
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls 247 (1720)
...+.. ...-+-+-.|..++... +......++..+++|.-- +-+--+.+-+..+||-+-..|..+- --
T Consensus 494 Heg~tq-n~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~LvPw~k~~L~pga-------~e 562 (791)
T KOG1222|consen 494 HEGATQ-NMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLVPWMKTQLQPGA-------DE 562 (791)
T ss_pred ccchHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhccccHHHHHhhcCCc-------cc
Confidence 554333 23344566666666554 455666677778877763 4455556667799999999997652 13
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
...+..++-+++.++.. ...+..+-.+++++.|++||+...
T Consensus 563 ddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred hhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhc
Confidence 45677777777776654 455566667999999999998654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0018 Score=57.22 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 000286 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI 127 (1720)
+.++..|+|+|++++...++.....+ ..++|.|+ .+|..++.+|+..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~-~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALI-PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHH-HHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHH-HHHcCCCHHHHHHHHHHHhcC
Confidence 46889999999999988887776644 47899999 888888889999999999987
|
... |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.75 Score=58.61 Aligned_cols=337 Identities=17% Similarity=0.127 Sum_probs=194.8
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...+..+++.+..- -++.|......|..+..+... .....+.+.+.++|... ...-+.-|++.+..+..+..
T Consensus 95 ~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~-----~~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~- 166 (569)
T KOG1242|consen 95 ISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKG-----LSGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGLG- 166 (569)
T ss_pred hHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhc-----cCHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCcH-
Confidence 34556666666554 789999999999888887543 45566789999999855 47778899999999987763
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCc---hhHHhhhhccCChHHHHH---HHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGA---LMAVLSYLDFFSTGVQRV---ALSTAA 164 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~Gg---L~~LL~lLd~~~~~vqr~---Al~aLs 164 (1720)
.....+.+.+-.|-.....-.+..-+|-++.+.+..+..-+ .-.+-+. ++.++.-+......+++. |+.++.
T Consensus 167 -i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 167 -IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred -HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 44566777888887444444444444444444444443322 1222233 333443333334444444 444444
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
++.. . ..++.++|.+..-+...-=+-...++..+..+++. .+.++.... ..++|.+.+.|...
T Consensus 245 ~~~~---~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~~l-p~iiP~lsevl~DT------- 307 (569)
T KOG1242|consen 245 RCLS---A---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSLCL-PDLIPVLSEVLWDT------- 307 (569)
T ss_pred HhcC---c---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHHHH-hHhhHHHHHHHccC-------
Confidence 4432 1 23566666666555433324455677777777775 566665544 57999999999887
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHhhcCCCcccccccc-----cccCCCHHHHHHHHHHhhccC
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLC-AKTLLHLGISGILKDILSGSGVSANSAVP-----PALSRPAEQIFEIVNLANELL 318 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~-t~~Ll~~gil~~L~~LL~~~~~~~~~~~s-----~i~~~~~~qi~~vi~li~~LL 318 (1720)
.+.++..+..+|..+++.-++- ++ -++|.|.+.|..+....--.+. ..++--...-. +-++
T Consensus 308 --~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL------almv 374 (569)
T KOG1242|consen 308 --KPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL------ALMV 374 (569)
T ss_pred --CHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhH------HHHH
Confidence 5889999999999988653221 11 1345666666655421100000 00000000001 1112
Q ss_pred CCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHH
Q 000286 319 PPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1720)
Q Consensus 319 P~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~ 398 (1720)
|.|.++ --++... .+ .......+.+..+ ..+|..+..|+-.|+|-|-.+..-. .+.
T Consensus 375 piL~R~--------------l~eRst~----~k----r~t~~IidNm~~L-veDp~~lapfl~~Llp~lk~~~~d~-~PE 430 (569)
T KOG1242|consen 375 PILKRG--------------LAERSTS----IK----RKTAIIIDNMCKL-VEDPKDLAPFLPSLLPGLKENLDDA-VPE 430 (569)
T ss_pred HHHHHH--------------Hhhccch----hh----hhHHHHHHHHHHh-hcCHHHHhhhHHHHhhHHHHHhcCC-Chh
Confidence 222221 1011000 00 0001122233332 5578888899999999999998776 999
Q ss_pred HHHHHHHHHHHHh
Q 000286 399 VRHKCLSVIGKLM 411 (1720)
Q Consensus 399 VR~~~L~~l~r~v 411 (1720)
||.-..+++..++
T Consensus 431 vR~vaarAL~~l~ 443 (569)
T KOG1242|consen 431 VRAVAARALGALL 443 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.61 Score=60.58 Aligned_cols=354 Identities=15% Similarity=0.172 Sum_probs=200.1
Q ss_pred cchHHHHHHHhhcC----CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHH-HHHhhcCCCCHHHHHHHHHHHHHhh
Q 000286 11 SGRLKKILSGLRAD----GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPV-LVGLLNHESNPDIMLLAARALTHLC 85 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~----~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~-LV~lL~~~~~~eiq~~AaraLtNL~ 85 (1720)
+.+++.++..++.. ++..+...=+..|+..+...+++.. .....+++- .+++|..+. -==|.+| |--++
T Consensus 7 ~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypa-hFGqiec---lKLia 80 (866)
T KOG1062|consen 7 SSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPA-HFGQIEC---LKLIA 80 (866)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCc-cchhhHH---HHHhc
Confidence 37899999988521 2445555556777777776444332 112222332 245565442 1122222 22222
Q ss_pred ccCCcchhh---------hc--cccc----HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhcc
Q 000286 86 DVLPSSCAA---------VV--HYGA----VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF 150 (1720)
Q Consensus 86 ~~~p~~~~~---------vV--~~Ga----Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~ 150 (1720)
+. +.... +. .+.+ +-.|. +=|.+.+--+.--|+.+|++|+...- --...+-+-.+|.+
T Consensus 81 s~--~f~dKRiGYLaamLlLdE~qdvllLltNslk-nDL~s~nq~vVglAL~alg~i~s~Em----ardlapeVe~Ll~~ 153 (866)
T KOG1062|consen 81 SD--NFLDKRIGYLAAMLLLDERQDLLLLLTNSLK-NDLNSSNQYVVGLALCALGNICSPEM----ARDLAPEVERLLQH 153 (866)
T ss_pred CC--CchHHHHHHHHHHHHhccchHHHHHHHHHHH-hhccCCCeeehHHHHHHhhccCCHHH----hHHhhHHHHHHHhC
Confidence 11 11110 00 0011 11222 33456666777889999999975321 11234566677888
Q ss_pred CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHH
Q 000286 151 FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQA 230 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~L 230 (1720)
.++.+.++|+-|+..+-++.| ..++-+++....+|...+..|+-.++..+..||.. +++.+...-+ +++.+
T Consensus 154 ~~~~irKKA~Lca~r~irK~P----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~---~~~~l~~fr~--l~~~l 224 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVP----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI---SPDALSYFRD--LVPSL 224 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCc----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc---CHHHHHHHHH--HHHHH
Confidence 899999999999999998765 34566788889999999999999898889999986 7887777776 67777
Q ss_pred HHhhcCCCCCCC------CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCH
Q 000286 231 ATLISTSNSGGG------QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304 (1720)
Q Consensus 231 v~LL~~~~~~~~------~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~ 304 (1720)
|..|..-...+= ...-.+-++..+||+|..+-.++++..+.+-+ .|-++.+......|.. .
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~G--------n 291 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAG--------N 291 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccch--------h
Confidence 777653210000 12346779999999999999998887775533 5566665544322221 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHH
Q 000286 305 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 384 (1720)
Q Consensus 305 ~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~ll 384 (1720)
.-+++++.-|..+.|.=.=.+..+....+.+. +. +.|-...--..-...+..+|..+++==.-++
T Consensus 292 AILYE~V~TI~~I~~~~~LrvlainiLgkFL~-n~--------------d~NirYvaLn~L~r~V~~d~~avqrHr~tIl 356 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSNSGLRVLAINILGKFLL-NR--------------DNNIRYVALNMLLRVVQQDPTAVQRHRSTIL 356 (866)
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHhc-CC--------------ccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence 23456665454444411000000000001110 00 0000000111223344556665554333333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 385 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 385 P~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
-.| .-.|.+|||++|-.+++|+.-.+-..+
T Consensus 357 eCL-----~DpD~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 357 ECL-----KDPDVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred HHh-----cCCcHHHHHHHHHHHHHHhccccHHHH
Confidence 333 347999999999999999977776543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=67.07 Aligned_cols=241 Identities=20% Similarity=0.215 Sum_probs=159.7
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc------hhhhcCchhHHhhhhcc-------CChHHHHHHHHHHHHhccCCCCc
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPT------ACLRAGALMAVLSYLDF-------FSTGVQRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~------~Il~~GgL~~LL~lLd~-------~~~~vqr~Al~aLsNlc~~~~~~ 173 (1720)
+||......=+-.++-.+.++....+. .|.++=|..-+-.+|.. .....+.-|+.+++-+|+.....
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a 91 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA 91 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence 555555533334444555555443321 35566566666666653 34567778999999999955444
Q ss_pred hhHHHhCcHHHHHHhhccCCH-HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 174 AADFVMEAVPLLTNLLQYHDA-KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 174 ~~~~v~~~lP~L~~LL~~~D~-~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.-..+.+-||.|+.++.+.+. .++.+|+.||..|+. +++-.+.+++.|.++.|++.+.+. +....
T Consensus 92 ~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~----------~~~~E 157 (543)
T PF05536_consen 92 SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQ----------SFQME 157 (543)
T ss_pred cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhC----------cchHH
Confidence 445677899999999877766 999999999999995 899999999999999999999774 34677
Q ss_pred HHHHHHHHHhcCCHHHHHH---HHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000286 253 GLIRLLSTCASGSPLCAKT---LLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLP 329 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~---Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~ 329 (1720)
.++.+|.++++......-. -.-..++..|...+... ..+.-.+++.++..+||..+....-
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~--------------~~~~kfell~~L~~~L~~~~~~~~~-- 221 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF--------------HGEDKFELLEFLSAFLPRSPILPLE-- 221 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh--------------ccchHHHHHHHHHHhcCcCCccccc--
Confidence 8888888887754421110 00012334444444321 1223355577778888865210000
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 000286 330 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1720)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r 409 (1720)
. ..++ .-...+..-+.++.++-+.+.-|..++.+..-
T Consensus 222 --------------~-------------------------~~~~----~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~ 258 (543)
T PF05536_consen 222 --------------S-------------------------PPSP----KWLSDLRKGLRDILQSRLTPSQRDPALNLAAS 258 (543)
T ss_pred --------------c-------------------------CChh----hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0011 22356777788888999999999999999999
Q ss_pred HhhcCCHHHHH
Q 000286 410 LMYFSSAEMIQ 420 (1720)
Q Consensus 410 ~v~~~~~~~L~ 420 (1720)
|+...-++++-
T Consensus 259 Ll~~~G~~wl~ 269 (543)
T PF05536_consen 259 LLDLLGPEWLF 269 (543)
T ss_pred HHHHhChHhhc
Confidence 99886666644
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0025 Score=56.34 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000286 154 GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 207 (1720)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L 207 (1720)
.+++.|+|+|.+++...+........+++|.|..+|++++..|...|||||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578899999999888776666678889999999999999999999999999876
|
... |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0032 Score=51.67 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=34.2
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
+.+..+++.|+||.|+ +|+...+.+++++|+|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALV-ELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHcC
Confidence 4566788999999999 88888899999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.15 Score=63.14 Aligned_cols=373 Identities=13% Similarity=0.098 Sum_probs=201.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCcc--ccccc-------------ccCcHHHHHHhhcC------CCCHHHHHHHH
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEES--LSTFS-------------VDSFAPVLVGLLNH------ESNPDIMLLAA 78 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~--l~~~~-------------~~g~Vp~LV~lL~~------~~~~eiq~~Aa 78 (1720)
..++. +.++..+|+.--+-+...+.+-. +..+| ...++|.|+++|.. +++..+-..|.
T Consensus 271 ~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 271 FMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34566 66788888776655544332211 12344 44489999999974 23456777888
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch---hhhcCchhHHhhhhccCChHH
Q 000286 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA---CLRAGALMAVLSYLDFFSTGV 155 (1720)
Q Consensus 79 raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~---Il~~GgL~~LL~lLd~~~~~v 155 (1720)
-||--++... ...+++. |=.+++.=+..++-.-+|.++.|++.+-...... -+-..+++.++........-+
T Consensus 350 sCLqlfaq~~---gd~i~~p--Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 350 SCLQLFAQLK---GDKIMRP--VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred HHHHHHHHHh---hhHhHHH--HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 8888777532 2234442 5556667777788888899999999997654442 223457788888877777888
Q ss_pred HHHHHHHHHHhccCCCCc--hhHHHhCcHHHHHHhh-c-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC---CcHH
Q 000286 156 QRVALSTAANMCKKLPSD--AADFVMEAVPLLTNLL-Q-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH---GLVT 228 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~--~~~~v~~~lP~L~~LL-~-~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~---gll~ 228 (1720)
...++||+..++...+.. ...++ .+.....| . .+.+++..++||.+.++++.+.........++.. .++.
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl---~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~ 501 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHL---VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILN 501 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccc---cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH
Confidence 899999999998744211 11111 12222222 1 2458999999999999999653222111222211 1222
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccc-ccccCCC-HHH
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAV-PPALSRP-AEQ 306 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~-s~i~~~~-~~q 306 (1720)
.|+.--... .-..+.+..+..+|+.+..-+++....++ .|+......=|.. ++.+ +++..-. ...
T Consensus 502 ~Lv~~t~~~-------~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~-----~isv~~q~l~~eD~~~ 568 (858)
T COG5215 502 ALVKGTELA-------LNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDE-----CISVLGQILATEDQLL 568 (858)
T ss_pred HHHHHHHhh-------ccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH-----HHHHhhhhhhhHHHHH
Confidence 222211111 01345677788888888777665433222 3333333332221 1111 1111111 111
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHH
Q 000286 307 IFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPV 386 (1720)
Q Consensus 307 i~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~ 386 (1720)
++++..=+.++|..++... + + + +...-..|+-+
T Consensus 569 ~~elqSN~~~vl~aiir~~-------------------~-----~--------------------~---ie~v~D~lm~L 601 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTR-------------------R-----R--------------------D---IEDVEDQLMEL 601 (858)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------------C-----C--------------------C---cccHHHHHHHH
Confidence 2222221222222222100 0 0 0 00001245666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000286 387 LIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1720)
Q Consensus 387 L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~ 464 (1720)
|+.+..++-..-+--.++.+|-.|........-+-+ ..+.-|+..-|+..|..+...|.-++--|-.-+...|.+
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~---~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~ 676 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA---SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI 676 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 777777775555677788888777643222111101 245566667777788777777777766666555554443
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.082 Score=70.47 Aligned_cols=228 Identities=16% Similarity=0.201 Sum_probs=139.9
Q ss_pred cCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh---cCCc----HHHHHHHHHH
Q 000286 55 DSFAPVLVGLLNHES----NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL---TIEY----MDLAEQSLQA 123 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~----~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL---~~~~----~dl~Eqal~a 123 (1720)
.|.+..|+.+|..-. ..++--.....|.+.+. .+.+++.+++.|+|+.|+..|. .... .+++|+.+..
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 355666666665321 23333345555555555 4788899999999999997664 4444 7999999999
Q ss_pred HHHhhccCcch-------hhhcC-----c---hhHHhhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 124 LKKISQEHPTA-------CLRAG-----A---LMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 124 L~nIS~~~~~~-------Il~~G-----g---L~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
++-|..+.... ..... . +..+++.+.. .+..+....+.+|-+++.+.+......+.-+-|.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~ 274 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPY 274 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHh
Confidence 99997653321 11222 2 5666666653 2567788889999999987665554444444444
Q ss_pred HHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCH---HHHHHHHhCCcHHHHHHhhcCCCCCCC---C----CCCChhHHH
Q 000286 185 LTNLLQY--HDAKVLEHASVCLTRIAEAFASSP---DKLDELCNHGLVTQAATLISTSNSGGG---Q----ASLSTPTYT 252 (1720)
Q Consensus 185 L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~---~~~~~li~~gll~~Lv~LL~~~~~~~~---~----~~ls~~i~~ 252 (1720)
| ++=.. .+..=-.-.+.||+.|+.+..++. ...+.+++.|++...++.|...-+... + ..++.....
T Consensus 275 l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 L-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred c-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 4 23111 111111234788888888865443 567888899999999998865421100 0 013334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhh
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL 285 (1720)
-+|++|.-+|.+... +|.++..++++.|..|=
T Consensus 354 ~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LE 385 (802)
T PF13764_consen 354 YILRLLRGLARGHEP-TQLLIAEQLLPLLHRLE 385 (802)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhh
Confidence 677788888877554 45556666665555543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.074 Score=68.99 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=130.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc--ccccccCcHHHHHHhhcCCC-----CH-HHHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL--STFSVDSFAPVLVGLLNHES-----NP-DIMLLAARAL 81 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l--~~~~~~g~Vp~LV~lL~~~~-----~~-eiq~~AaraL 81 (1720)
++..+++.+..|++. +-+.++.||--+.+++...+.... +.+-..=..+-|-++|+... ++ ..+-.|.-+|
T Consensus 3 ~~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 3 QSASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred chHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 456789999999988 568889999999888886553221 11222222355555565421 23 3445777777
Q ss_pred HHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCChHHHH
Q 000286 82 THLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQR 157 (1720)
Q Consensus 82 tNL~~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr 157 (1720)
..++. .|+... .++ +-||.|++-+.......+.+.|+.+|..|+.... ..+++.|+++.+...+.. ....+.
T Consensus 82 ~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 77776 454443 344 5899999555555555999999999999995443 379999999999999887 666778
Q ss_pred HHHHHHHHhccCCCC----chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 158 VALSTAANMCKKLPS----DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 158 ~Al~aLsNlc~~~~~----~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.|+.++.+++..... .....+..+++.|............-.+|..|..+-..
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 899999998885442 22233345566666665544444444556666665553
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=48.88 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
++++.+.++++|+++.|++||.+. +..++..++++|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999976 68999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.072 Score=64.20 Aligned_cols=177 Identities=17% Similarity=0.145 Sum_probs=121.4
Q ss_pred cchHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000286 11 SGRLKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~ 88 (1720)
.+.+..|+..+++. +. .++++|.+-|-++++..|-+.+ ...| +..++.+-+....++++...+..|.||...+
T Consensus 179 ~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~aeN~d~v---a~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVAENRDRV---ARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred cchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhhhhhhHH---hhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 44677778888775 33 5599999999888887765543 3333 4444444444446899999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccCChHHHH-HHHHHH
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQR-VALSTA 163 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vqr-~Al~aL 163 (1720)
.+.+..+|..|++..++ ---.-.++++...|.-||+|++-.... -+++..+ +--|-.|.|...++.| .|+-++
T Consensus 254 eet~~~Lvaa~~lD~vl-~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVL-YWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred HHHHHHHHhhcccchhe-eecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhcchHHHHHHHHHHHH
Confidence 99999999999999887 444556799999999999999876553 3444433 3334445555555555 588888
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhccCCH
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQYHDA 194 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~ 194 (1720)
+-++.+.+........+-+...-.++.+-|+
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCc
Confidence 8888776655544444544444444444443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.4 Score=62.83 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=152.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC-------
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL------- 88 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~------- 88 (1720)
.|++...+. |.+.++.|+..|-.-|.... -.++.=....++..|+++|.+. |.|+|..|.+||+-|..--
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 688888777 99999999999977776542 1222223345799999999876 7999999999999443211
Q ss_pred -------------------------------CcchhhhcccccHHHHHHHH-----------------------------
Q 000286 89 -------------------------------PSSCAAVVHYGAVTCFVARL----------------------------- 108 (1720)
Q Consensus 89 -------------------------------p~~~~~vV~~GaVp~Lv~kL----------------------------- 108 (1720)
|.+.....-..+++.+..+|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 10111111111111111111
Q ss_pred -----------------hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccCC
Q 000286 109 -----------------LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 109 -----------------L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+.++-.-++..|+.+|+.++...+..... +.+..|+.-|.. ......|..+.+++.+|+..
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 12223456666777777776655543221 233334444432 35677888899999999965
Q ss_pred CCchhHHHhCcHHHHHHhh---ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC-C-C----
Q 000286 171 PSDAADFVMEAVPLLTNLL---QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS-G-G---- 241 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL---~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~-~-~---- 241 (1720)
...--.+...++|.+.+.. +..|.++.+.++.++-..... .|..+-..+. .++..+++.+.+..+ . +
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CPKEILPHVP-EIINLCLSYISYDPNYNYDTEED 320 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhhcccch-HHHHHHHHHhccCCCCCCCCccc
Confidence 5444455677899999988 778899999999999888875 5554444332 356666666654210 0 0
Q ss_pred -------------------CCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 242 -------------------GQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 242 -------------------~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
..-.++-.++..+++||..+.....+.
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 012356678999999998877665554
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.6 Score=61.27 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=142.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1720)
+..+...|...+.|.+-..|.|++...++..+-.....- -..-..++.+......-++-.|+.++..-+..+.-.=+.
T Consensus 451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~ 528 (1005)
T KOG2274|consen 451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ 528 (1005)
T ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc
Confidence 334444455555688888888888877765432222111 011222323444455666667777777776444434556
Q ss_pred cCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-h-ccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000286 138 AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-L-QYHDAKVLEHASVCLTRIAEAFASSP 215 (1720)
Q Consensus 138 ~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L-~~~D~~V~e~A~~aLs~L~~~~~~~~ 215 (1720)
-+.|..++++...++..+.--.+-+++-.|+-.+......-..+.|.+..+ + .++|+.|...+--++-.|+... .+-
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANY 607 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhh
Confidence 788889999999999999999999999999977777766777889988888 4 4568888887777777776631 111
Q ss_pred HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 216 ~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
...++. ++|.|++.|.....+ .....+..++.+|..+.++.+.=.-..+-+-+.|.+.++.-++.
T Consensus 608 g~m~e~----~iPslisil~~~~~~-----~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd 672 (1005)
T KOG2274|consen 608 GPMQER----LIPSLISVLQLNADK-----APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD 672 (1005)
T ss_pred cchHHH----HHHHHHHHHcCcccc-----cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC
Confidence 122222 589999999765311 23556777888888887765433444444555666666665544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.15 Score=68.22 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=164.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCC-cccc-cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc----
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTE-ESLS-TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV---- 87 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~-~~l~-~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~---- 87 (1720)
++.+|..+... +..+|..|+..|+++|.+-.. ++.. .+-++=+.|.|-.++.+..+.-+...=|.||.-+|.-
T Consensus 464 lPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 464 LPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred HHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 44455555554 889999999999999998654 2232 3445558899999998644444455556666665521
Q ss_pred --------------CCcc-----------hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchh
Q 000286 88 --------------LPSS-----------CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALM 142 (1720)
Q Consensus 88 --------------~p~~-----------~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~ 142 (1720)
.|+. .+.++ ..|..++..|+.-+..-|+..-+..|.-+|.=.++.--..=.|+
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLs 620 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILS 620 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHH
Confidence 1111 11111 14666666777777777777666666666643222111112367
Q ss_pred HHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 143 AVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 143 ~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
.|+.||+..+-...-.-.-.|.-+|....... .-+..+|.|..-|....+.|+..|+.||.-|++. ..++...
T Consensus 621 hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-----~ll~K~~ 693 (1431)
T KOG1240|consen 621 HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-----GLLRKPA 693 (1431)
T ss_pred HHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-----cccchHH
Confidence 78888887644443333444555554332221 1345788888889999999999999999999984 2333333
Q ss_pred hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCC
Q 000286 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302 (1720)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~ 302 (1720)
=.++++.+.-+|.++ +.=++..++.+|..++.. ....=+.|-+.|.|...|. +
T Consensus 694 v~~i~~~v~PlL~hP---------N~WIR~~~~~iI~~~~~~---ls~advyc~l~P~irpfl~---------------~ 746 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHP---------NLWIRRAVLGIIAAIARQ---LSAADVYCKLMPLIRPFLE---------------R 746 (1431)
T ss_pred HHHHHHhhhhheeCc---------hHHHHHHHHHHHHHHHhh---hhhhhheEEeehhhHHhhh---------------c
Confidence 334667777778776 455777777777665532 1122223555566555554 2
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCC
Q 000286 303 PAEQIFEIVNLANELLPPLPQGTI 326 (1720)
Q Consensus 303 ~~~qi~~vi~li~~LLP~L~~~~~ 326 (1720)
+..||..---|+.-|.||+++.++
T Consensus 747 ~v~~i~s~~~LlsclkpPVsRsv~ 770 (1431)
T KOG1240|consen 747 PVIQIESKEVLLSCLKPPVSRSVF 770 (1431)
T ss_pred cHhhhcchHHHHHHhcCCCcHHHH
Confidence 333443333344667788777544
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.11 Score=64.13 Aligned_cols=200 Identities=9% Similarity=-0.001 Sum_probs=143.8
Q ss_pred HHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChH
Q 000286 78 ARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTG 154 (1720)
Q Consensus 78 araLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~ 154 (1720)
|-||..+...-.--+..+.++.++..|+ ++|+-+.+.+.--++-++.|.--...+ ..++.|.|..++.++...+..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi-~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLI-DALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHH-HHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344444433222334567888899999 888888877777777777777655443 588999999999999988889
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC----cHH
Q 000286 155 VQRVALSTAANMCKKL-PSDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG----LVT 228 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~-~~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g----ll~ 228 (1720)
.|.+.+|.+..+.-+. ....|..+ +-.+..++.+.+.++-+|+.+++..|.|++..-..+.+-.+.++... +.+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 9999999999887754 33344444 45788899999999999999999999999874222222333333332 556
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHhhcC
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LGISGILKDILSG 287 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~-~gil~~L~~LL~~ 287 (1720)
.|++-+... ++-...+-+-+|.++|+.+++.-+.+++ ..++..+..+|..
T Consensus 569 ~l~~k~e~~---------np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 569 RLIDKYEEN---------NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHHHHHHhc---------CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 677777654 2334455688899999999888888888 5678888777753
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.8 Score=54.85 Aligned_cols=220 Identities=18% Similarity=0.209 Sum_probs=124.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV 96 (1720)
|.+.|++. +..++--||..|+++.+-+- ...+.|.+.++|++. ++-+..-|+-|+..+..-.|+....++
T Consensus 112 lknDL~s~-nq~vVglAL~alg~i~s~Em--------ardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f~ 181 (866)
T KOG1062|consen 112 LKNDLNSS-NQYVVGLALCALGNICSPEM--------ARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHFV 181 (866)
T ss_pred HHhhccCC-CeeehHHHHHHhhccCCHHH--------hHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHhh
Confidence 34456665 77788888888877666432 235678888888875 588888888888888877777666554
Q ss_pred cc----------cc----HHHHHHHHhcCC------cHHHHHHHHHHHHHhhcc--Ccc--------hhhhcCchhHHhh
Q 000286 97 HY----------GA----VTCFVARLLTIE------YMDLAEQSLQALKKISQE--HPT--------ACLRAGALMAVLS 146 (1720)
Q Consensus 97 ~~----------Ga----Vp~Lv~kLL~~~------~~dl~Eqal~aL~nIS~~--~~~--------~Il~~GgL~~LL~ 146 (1720)
.. |+ +-.+. .|..+. +.++.++-+..|.+|... .+. -.++.- +-.+|.
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~-e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLIT-ELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 32 22 22222 444442 357788888888888643 111 122221 112333
Q ss_pred hhccCChHHHHHHHHHHHHhccCCCCch-------h-------------HHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000286 147 YLDFFSTGVQRVALSTAANMCKKLPSDA-------A-------------DFVMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 147 lLd~~~~~vqr~Al~aLsNlc~~~~~~~-------~-------------~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~ 206 (1720)
+|-..+...-..-.-+|+.+|++.+... + ....-++.+|.+.|.+.|..+.--|+..|.+
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 3433344444444444444554322111 1 1112245666666666666666666666666
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
++.. ++...|.-- ..+++.|.+. +..++..++..+..|...+
T Consensus 340 ~V~~---d~~avqrHr-----~tIleCL~Dp---------D~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 340 VVQQ---DPTAVQRHR-----STILECLKDP---------DVSIKRRALELSYALVNES 381 (866)
T ss_pred hhcC---CcHHHHHHH-----HHHHHHhcCC---------cHHHHHHHHHHHHHHhccc
Confidence 6664 443333322 2356666665 4667777877777776554
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.12 Score=65.68 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=100.6
Q ss_pred ccccccCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC----cHHH
Q 000286 50 STFSVDSFAPVLVGLL---------NHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE----YMDL 116 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL---------~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~----~~dl 116 (1720)
..+.....+..|.++= ....++++..+|.+||+|++-.++..++.+++.|..+.+|++|-... ..|+
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 3444555566666555 33346899999999999999999999999999999999996665541 5677
Q ss_pred HHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhcc-----------------CChHHHHHHHHHHHHhccCCCCc--
Q 000286 117 AEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF-----------------FSTGVQRVALSTAANMCKKLPSD-- 173 (1720)
Q Consensus 117 ~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~-----------------~~~~vqr~Al~aLsNlc~~~~~~-- 173 (1720)
.--....|--++...+. .+-+.+++..++..|.. ....+...++.++.|+....+..
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 76677777666655443 34455788877776631 02234556788888887644322
Q ss_pred --hhHHHhCcHHHHHHhh---ccC--CHHHHHHHHHHHHHH
Q 000286 174 --AADFVMEAVPLLTNLL---QYH--DAKVLEHASVCLTRI 207 (1720)
Q Consensus 174 --~~~~v~~~lP~L~~LL---~~~--D~~V~e~A~~aLs~L 207 (1720)
....+..++++|..+| ... -......+..+|.++
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 2233444555555552 111 134555666666655
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.062 Score=61.89 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=120.9
Q ss_pred cCCCCHHHHHHHHHHHHHhhccC--Ccchhhhccc--ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcC
Q 000286 66 NHESNPDIMLLAARALTHLCDVL--PSSCAAVVHY--GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAG 139 (1720)
Q Consensus 66 ~~~~~~eiq~~AaraLtNL~~~~--p~~~~~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~G 139 (1720)
..+.+.+.+.+|..-|..++.+. ......++.. ..++.++ +.+.....-|...|+.+|..|+..-... -.-..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII-KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH-H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 34557889999999999988876 2233333221 3445666 6666666788899999999998765543 22345
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~ 218 (1720)
.++.|+..+.....-+...|..++..+|...+ .... .++.+...+.+..+.+...++.++..+...+..+...+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 67888888888777888889999999998765 2221 27788888999999999999999999998743112222
Q ss_pred HHHH-hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHH
Q 000286 219 DELC-NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLL 273 (1720)
Q Consensus 219 ~~li-~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll 273 (1720)
+.-. -..+++.+..+|... ++.++..+-.++..+...-++.+..++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~---------~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA---------DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred cccchHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 2211 124678888888877 688999999999999877777776665
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.65 Score=58.25 Aligned_cols=13 Identities=0% Similarity=-0.171 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHh
Q 000286 399 VRHKCLSVIGKLM 411 (1720)
Q Consensus 399 VR~~~L~~l~r~v 411 (1720)
+|+.+-.++-+|.
T Consensus 283 ~aR~A~eA~~~It 295 (410)
T TIGR02270 283 WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766654
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.28 Score=59.93 Aligned_cols=187 Identities=26% Similarity=0.267 Sum_probs=136.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.+++.|.+. ++.+++.|...+++ +.....+|.|..+|.++ ++.++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGE------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGELGD------ 103 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhh------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC------
Confidence 566777777776 88888888887532 33445799999999977 48999999998887742
Q ss_pred hhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCCh------------HHHHHH
Q 000286 93 AAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFST------------GVQRVA 159 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~------------~vqr~A 159 (1720)
.-++|.|+ +++. ..+..++..|.++|+.+-... ++..++..++.... .++..+
T Consensus 104 -----~~a~~~li-~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 -----PEAVPPLV-ELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hhHHHHHH-HHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 23788999 6666 689999999999999986533 25556666654331 234444
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~ 239 (1720)
+..+.++- ....++.|...+...+..|...|..++..+... . ..+...+...+...
T Consensus 170 ~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~---~---------~~~~~~l~~~~~~~-- 225 (335)
T COG1413 170 AEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE---N---------VEAADLLVKALSDE-- 225 (335)
T ss_pred HHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc---h---------hhHHHHHHHHhcCC--
Confidence 44444432 345788999999999999999999999999884 2 44667788888776
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 240 GGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 240 ~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
+..+...++..|+.+-..
T Consensus 226 -------~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 226 -------SLEVRKAALLALGEIGDE 243 (335)
T ss_pred -------CHHHHHHHHHHhcccCcc
Confidence 567888888888876543
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1 Score=59.82 Aligned_cols=335 Identities=14% Similarity=0.144 Sum_probs=179.1
Q ss_pred cCcHHHHHHhhc------CCC-CHHHHHHHHHHHHHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000286 55 DSFAPVLVGLLN------HES-NPDIMLLAARALTHLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1720)
Q Consensus 55 ~g~Vp~LV~lL~------~~~-~~eiq~~AaraLtNL~~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~ 125 (1720)
.++++-++++|. .+. ++--..=|.+++++|++....... ..++.=.++.+. -.+.+++--++-+|+|+|.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf-P~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF-PEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh-HhhcCchhHHHHHHHHHHH
Confidence 356888888887 222 344445778888888864322211 222222333333 4456888999999999999
Q ss_pred Hhh-ccCcchhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCCCCch---hHHHhCcHHHHHHhhccCCHHHHHHH
Q 000286 126 KIS-QEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDA---ADFVMEAVPLLTNLLQYHDAKVLEHA 200 (1720)
Q Consensus 126 nIS-~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~---~~~v~~~lP~L~~LL~~~D~~V~e~A 200 (1720)
.+| -+-.+..+-..++....+.|. .....++-.|+-++.-+..+.+..+ ..++.+.+..|..+.+..+.+.+..+
T Consensus 488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 999 566655555556777777666 6777888888888887777654332 23455556666666665555555544
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH---hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH---hcC---CHHHHHH
Q 000286 201 SVCLTRIAEAFASSPDKLDELC---NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC---ASG---SPLCAKT 271 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li---~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL---as~---s~~~t~~ 271 (1720)
.. .|+..| .+.+..+. -..+.....+++...+. ....+..-...|+.+|..| ... .++..+.
T Consensus 568 me---~iV~~f---seElsPfA~eL~q~La~~F~k~l~~~~~---~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 568 ME---KIVCKF---SEELSPFAVELCQNLAETFLKVLQTSED---EDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred HH---HHHHHH---HHhhchhHHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 43 334432 11222211 11234445555543110 0011222222333333222 211 1111111
Q ss_pred HHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCC
Q 000286 272 LLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGK 351 (1720)
Q Consensus 272 Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~ 351 (1720)
++..+++++..+|++.. .+-..++.+++.++-=
T Consensus 639 -le~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~-------------------------------- 671 (1010)
T KOG1991|consen 639 -LEPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF-------------------------------- 671 (1010)
T ss_pred -HHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh--------------------------------
Confidence 11233334444333211 0111122221111000
Q ss_pred CCCCCCCccchhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHH
Q 000286 352 QDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISS 430 (1720)
Q Consensus 352 ~~~~~~~~~~~~~r~~~~~~-~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss 430 (1720)
+.++ .|++ =.|||++++++.-.. .+-=-...-++.+.|.+-.++.+........+..
T Consensus 672 ----------------~~~~Isp~m-----W~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~ 729 (1010)
T KOG1991|consen 672 ----------------LSKEISPIM-----WGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLE 729 (1010)
T ss_pred ----------------hhcccCHHH-----HHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHHHH
Confidence 0001 2332 278889999887653 3344567888999999999877776666677888
Q ss_pred HHHHHhhcCC--CchHHhHHHHHHHHHh---hCchhhhhhHHh
Q 000286 431 FLAGVLAWKD--PHVLIPSLQIAEILME---KLPGTFSKMFVR 468 (1720)
Q Consensus 431 ~la~il~~~d--~~lv~~aL~i~~~Ll~---K~pd~f~~~f~R 468 (1720)
.+..+|.+++ ..=..+|-++.+.++. -++|-|.+.|.+
T Consensus 730 i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~ 772 (1010)
T KOG1991|consen 730 IIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLE 772 (1010)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHH
Confidence 8888888754 3334456677777663 345556666655
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.3 Score=61.17 Aligned_cols=151 Identities=16% Similarity=0.031 Sum_probs=116.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1720)
.++.|+..|...+.+++...|+++|.-.- .+ .+|..|+ ..+......++..++.+|+.|-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~-~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVL-AVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHH-HHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 68889999965556888877777764221 11 1488999 88888899999999999997643
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
......|+.+|+..++.+++.++.++.. ...+..+.|..+|++.|+.|...|+.+|.+|...
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 3466788889988888888888866665 1234577899999999999999999999998874
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
..++.|...+.+. ++.+...++..++.+
T Consensus 178 --------~a~~~L~~al~d~---------~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 --------LSESTLRLYLRDS---------DPEVRFAALEAGLLA 205 (410)
T ss_pred --------cchHHHHHHHcCC---------CHHHHHHHHHHHHHc
Confidence 4566677777766 688999999999776
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.29 Score=59.25 Aligned_cols=193 Identities=21% Similarity=0.191 Sum_probs=125.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc---ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS---VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV-- 87 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~---~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~-- 87 (1720)
++...+..|... ....+..||..|+++|...-- ..++ ...++..+.+.++.+. .+-+..|++++.-++--
T Consensus 44 ~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~---~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 44 KLKEAIDLLTEK-SSSTREAALEALIRALSSRYL---PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcC
Confidence 477788888766 689999999999999976432 2233 3347889999998775 46677898988877654
Q ss_pred CCcchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhc---cCcchhhh-cCchhHHhh--hhc--c--------
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQ---EHPTACLR-AGALMAVLS--YLD--F-------- 150 (1720)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~---~~~~~Il~-~GgL~~LL~--lLd--~-------- 150 (1720)
.-.....+.+ .+.|.|...+.... .+.++..|+.||+.++- .....+.+ ...+..+.. ++. .
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 2234444443 68888884444433 46677788888888753 22222221 011221111 111 1
Q ss_pred CChHHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 151 FSTGVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
.+..++-.|+.+-+-+....+...+ ......+|.|..+|.+.|.+|+..|--+|+-|.+..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1234666665555555554444222 345779999999999999999999999999887753
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.43 Score=59.16 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=107.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
+.+...+-++ +..++-.|.+.+|-++... ..+..+...++=--++..|..+. +..=..+|.+.+..+++... ..
T Consensus 28 ~~i~~~lL~~-~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~- 102 (371)
T PF14664_consen 28 ERIQCMLLSD-SKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GP- 102 (371)
T ss_pred HHHHHHHCCC-cHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cc-
Confidence 3344344455 5788888888887777653 33444444444334455555432 33334578888887777622 11
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCc
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~ 173 (1720)
.-+-.|+|..|+ .+.+.++..++..|+.+|..|+-.+|..+.++||+..++..+-.....+...++.++..+.......
T Consensus 103 ~~~~~~vvralv-aiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 103 KEIPRGVVRALV-AIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred ccCCHHHHHHHH-HHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 223557888999 8888999999999999999999999999999999999999987665567777888888887654443
Q ss_pred h
Q 000286 174 A 174 (1720)
Q Consensus 174 ~ 174 (1720)
.
T Consensus 182 ~ 182 (371)
T PF14664_consen 182 K 182 (371)
T ss_pred h
Confidence 3
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.3 Score=54.98 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=125.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccccc
Q 000286 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGA 100 (1720)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~Ga 100 (1720)
|.+. +.+.+.+|++.+=.....++. ...+.|-+++... ..|.|++...=-=|-++++..|+.+-. +
T Consensus 28 l~s~-n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESS-NDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred cccc-ChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 5554 667788888766444443332 3346777788877 457999987777788888888844333 5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180 (1720)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1720)
|+.++ +=++.+++.++--|+++|+.|=. ..+ -...++++.+.+++....+.|+|+-||.++-+-.+ +...-.+
T Consensus 94 vNti~-kDl~d~N~~iR~~AlR~ls~l~~---~el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g 166 (757)
T COG5096 94 VNTIQ-KDLQDPNEEIRGFALRTLSLLRV---KEL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHELG 166 (757)
T ss_pred HHHHH-hhccCCCHHHHHHHHHHHHhcCh---HHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhccc
Confidence 66777 77789999999999999998822 123 33478899999999999999999999999986321 1122344
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 181 ~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
.+-.+..++..+|+.|+.+|+.+|..|..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 77888888999999999999999988876
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=7.6 Score=50.85 Aligned_cols=180 Identities=15% Similarity=0.193 Sum_probs=121.7
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.....-+-..|...|.+. .....++|+..|-.+...+.+ ...+-|..|+-.... |.+++...---|.-+|+
T Consensus 30 f~sd~~~~~dL~~lLdSn-kd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAE 100 (968)
T KOG1060|consen 30 FLSDNIRHDDLKQLLDSN-KDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAE 100 (968)
T ss_pred eecCCCChHHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhh
Confidence 344555778889999887 557788888877666655433 455788888888766 69998877666777777
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
..|+-+- + -|-.+. +=|.-++..++.-|+.+|.-|=-- ++.-=.|-++-+.....+.-+.+.|+.++-.|
T Consensus 101 eqpdLAL--L---SIntfQ-k~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 101 EQPDLAL--L---SINTFQ-KALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred cCCCcee--e---eHHHHH-hhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 6665433 2 255666 778888899998777777766221 11111223333444567788888888888877
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
-+-.+... ...+..+..||...++.|+-.|+.|+--+|-
T Consensus 171 YsLd~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 171 YSLDPEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hcCChhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 65322211 2456677788888999999999999887775
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.91 Score=58.29 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=146.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccH
Q 000286 22 RADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV 101 (1720)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaV 101 (1720)
++. +.+..-.|+..|+.+ .+.+ ....+.+-++.+|++.- |-+...|.-+|+-++.-.|+.... +.
T Consensus 119 ~S~-n~ye~giAL~GLS~f---vTpd-----LARDLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~F 183 (877)
T KOG1059|consen 119 NSS-NVYEVGLALSGLSCI---VTPD-----LARDLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CF 183 (877)
T ss_pred ccC-ccchhhheecccccc---cCch-----hhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hH
Confidence 444 556666666666544 3333 24567888999999874 899999999999999988877664 78
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch----------hh----hcCchhHHhhhhccCC---h-----------
Q 000286 102 TCFVARLLTIEYMDLAEQSLQALKKISQEHPTA----------CL----RAGALMAVLSYLDFFS---T----------- 153 (1720)
Q Consensus 102 p~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~----------Il----~~GgL~~LL~lLd~~~---~----------- 153 (1720)
|.|++ =|+-+++.|+-.|+.+++-+|+.+|+. ++ .+-.|-.++.++...+ +
T Consensus 184 prL~E-kLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 184 PRLVE-KLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred HHHHH-hccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHH
Confidence 99994 458899999999999999999998851 11 1224444444442211 1
Q ss_pred -HHHH-HHHHHHHHhcc-----CC---CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh
Q 000286 154 -GVQR-VALSTAANMCK-----KL---PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN 223 (1720)
Q Consensus 154 -~vqr-~Al~aLsNlc~-----~~---~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~ 223 (1720)
.+.+ .|+..+..|.. +. -.+....++-|+..|..++..+|+.+.--+|.|++.|..- ++..+++..
T Consensus 263 ~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt---Hp~~Vqa~k- 338 (877)
T KOG1059|consen 263 ELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT---HPKAVQAHK- 338 (877)
T ss_pred HHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh---CHHHHHHhH-
Confidence 1111 13333333322 11 1245567888999999999999999999999999999985 776666554
Q ss_pred CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 224 HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 224 ~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
.-++++|... +.+++..||..|--|++-
T Consensus 339 ----dlIlrcL~Dk---------D~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 339 ----DLILRCLDDK---------DESIRLRALDLLYGMVSK 366 (877)
T ss_pred ----HHHHHHhccC---------CchhHHHHHHHHHHHhhh
Confidence 4567778765 577999999988877653
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.19 Score=63.72 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=128.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.++..|... -....+.+++-|+-+.... +..+ ..-...+||.|.+.|-+.+ ++++..+..||..+++.....-
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~a-p~qL-s~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCA-PKQL-SLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhc-hHHH-HHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhccHH
Confidence 355566666544 4456667777776444433 2222 2334568999999998775 9999999999999986432111
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh----ccCChHHHHHHHHHHHHhcc
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL----DFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL----d~~~~~vqr~Al~aLsNlc~ 168 (1720)
|. -.||.|++.+ ..+.- -... |+..|....--..+++-.+..++-+| +.-+..+.|.++.++-|+|+
T Consensus 331 --I~--~~ip~Lld~l-~dp~~-~~~e---~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 331 --IQ--KIIPTLLDAL-ADPSC-YTPE---CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred --HH--HHHHHHHHHh-cCccc-chHH---HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 11 1345555222 22211 1222 33333332222334445555555555 45578888999999999999
Q ss_pred CC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 169 KL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 169 ~~--~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
-. +..-.......+|.|...+...++++..-+..+|+.+.++. .+....++++.+.+.+...
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~-------g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL-------GEVSFDDLIPELSETLTSE 465 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH-------HhhcccccccHHHHhhccc
Confidence 44 44444556778899999888889999999999999888852 1111167788888888654
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.1 Score=53.13 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=132.4
Q ss_pred HHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC
Q 000286 34 LTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE 112 (1720)
Q Consensus 34 l~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~ 112 (1720)
+..|++++... +.+ ..+.-..+.+.+..+|-+++ .++...|-|++.++.... +....+++.+ ++.++-+-|..+
T Consensus 4 ~N~Lv~l~~~~--p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~-~~l~~~~~l~-id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRH--PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDE-ESLQILLKLH-IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhC--chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCH-HHHHHHHHcC-CchhhHhhhccc
Confidence 45666666653 222 23444446666666565554 899999999999988754 5666677666 555554555554
Q ss_pred c--HHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh
Q 000286 113 Y--MDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL 189 (1720)
Q Consensus 113 ~--~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL 189 (1720)
. ..=+|||+.-+..+..-... .-+-.|.+.+++...+..+....+.|+.+++-+|-..| +.....+.+..|.+.+
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL 156 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence 3 33467999999888765222 34567788889999998888999999999999997543 4445678899999987
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 190 ~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
.....++.+..+.++.++.+ +|...+.+...--+..+..-+.
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd----~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLD----SPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HhccHhHHHHHHHHHHHHhC----CcchhhhhcCCccHHHHHHhhh
Confidence 76655699999999999999 6666665554323444444443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.49 Score=62.69 Aligned_cols=265 Identities=17% Similarity=0.112 Sum_probs=178.2
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.......++-.++-|-|. --++-||.-|++.|-++.= .+..-..-|+-|-.++||++.. .|++-.-+.+=+.|+.
T Consensus 467 ~r~PPeQLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILA 541 (1387)
T KOG1517|consen 467 SRTPPEQLPIVLQVLLSQ---VHRLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILA 541 (1387)
T ss_pred cCCChHhcchHHHHHHHH---HHHHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHh
Confidence 344566788888888776 5688899999999998731 1233345589999999999874 8888777777778888
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHH-HH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRV-AL 160 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~-Al 160 (1720)
..+.+-..+|+.++=..+++.|-.+++ .+=+--|+-+|.-|.+..+. ++++.+.|..|+..|........|. ++
T Consensus 542 vD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ 621 (1387)
T KOG1517|consen 542 VDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLC 621 (1387)
T ss_pred cCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHH
Confidence 887665567766555555533433243 35666788899999988663 7999999999999998754455554 66
Q ss_pred HHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhh----cCCCHHHHHHHHh--------CCcH
Q 000286 161 STAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEA----FASSPDKLDELCN--------HGLV 227 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~----~~~~~~~~~~li~--------~gll 227 (1720)
-||..|-.+.+...+..++ .+...|..+|..+-++|...|+.||..+..+ |......++..++ .+.+
T Consensus 622 icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i 701 (1387)
T KOG1517|consen 622 ICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLI 701 (1387)
T ss_pred HHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHH
Confidence 6777777776666666554 5889999999999999999999999998886 3222233333332 0112
Q ss_pred H----HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhh
Q 000286 228 T----QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 228 ~----~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL 285 (1720)
. .++.+++.. ++-+...+.-+|+.++.+...+...+.-..+++-...+.
T Consensus 702 ~~~~~~ll~~vsdg---------splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE 754 (1387)
T KOG1517|consen 702 IKGLMSLLALVSDG---------SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLE 754 (1387)
T ss_pred HhhHHHHHHHHhcc---------chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhh
Confidence 2 333344333 444556666666766666655555444444444443333
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.086 Score=64.98 Aligned_cols=179 Identities=13% Similarity=0.053 Sum_probs=130.0
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+....++..|+++|.+++ .-++.-+.-+++|..---..-...++..|.|..|+ +++.+.+..++...+|+|..+--.
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~-~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV-NLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHH-HHhhcchhhhhhcchhhhhhhhhc
Confidence 5666778999999998542 44455778888888866666667788999999999 888888999999999999988654
Q ss_pred Ccc----hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC----CCchhHHHhC----cHHHHHHhhccCCHHHHH
Q 000286 131 HPT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL----PSDAADFVME----AVPLLTNLLQYHDAKVLE 198 (1720)
Q Consensus 131 ~~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~----~~~~~~~v~~----~lP~L~~LL~~~D~~V~e 198 (1720)
+.+ ..+..-|+..++.|.+...-.+|.+++.++.|+.-+. ...++..... .+..|..-+...++--.+
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 443 4778889999999999999999999999999976522 2223222111 345566666667777777
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhh
Q 000286 199 HASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLI 234 (1720)
Q Consensus 199 ~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL 234 (1720)
..|..|.+++.. +.+..+.+++. +++.-+-++|
T Consensus 584 ~~~yilv~~aa~---d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 584 EGCYILVRNAAC---DDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhHHHHHHHHhc---cchHHHHHHhHHHHHHHHHHHH
Confidence 779999999885 55555555543 3444444444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.42 Score=59.86 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=154.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHH---HHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQL---CEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTH 83 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L---~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq---~~AaraLtN 83 (1720)
.+--+..++..|++. -|..+..|+.-+ ..+|..+.+.. .+...|. .|.+-|. ++.||+. +.|..||++
T Consensus 602 l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~--~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 602 LSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETK--ELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYS 675 (975)
T ss_pred hHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHH--HHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhh
Confidence 344566778888887 677777776543 34444443321 1111121 2344444 3457764 456666666
Q ss_pred hhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh---ccCChHHHHHHH
Q 000286 84 LCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---DFFSTGVQRVAL 160 (1720)
Q Consensus 84 L~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d~~~~~vqr~Al 160 (1720)
...-.. .+.- -.|++|.|. -.|......+.+..+..++.|+...+..|--..=+..|..++ ...+.++.|+|.
T Consensus 676 v~~~~~--mqpP-i~~ilP~lt-PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~ 751 (975)
T COG5181 676 VHRFRS--MQPP-ISGILPSLT-PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNAT 751 (975)
T ss_pred hhcccc--cCCc-hhhcccccc-HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 654331 1111 247899999 888899999999999999999999887554444444454444 456889999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCC
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~ 240 (1720)
.++.-+++-..+ ++++.+|.+-|..++.........+++-.++- .|....|--||..-.+
T Consensus 752 ~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~-------------cgpfsVlP~lm~dY~T- 811 (975)
T COG5181 752 ETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY-------------CGPFSVLPTLMSDYET- 811 (975)
T ss_pred hhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh-------------cCchhhHHHHHhcccC-
Confidence 999988875443 34677777777777665554444445444432 2434444444443221
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc
Q 000286 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP 298 (1720)
Q Consensus 241 ~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~ 298 (1720)
-..+++..+|++++.+-..--+++..-+ .-+.|.|...|+..+.....+++|
T Consensus 812 -----Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 812 -----PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred -----chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHH
Confidence 1467899999999987644323222211 346788888888776644444333
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.2 Score=56.62 Aligned_cols=231 Identities=18% Similarity=0.169 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhccCCcchhhhc-cc
Q 000286 24 DGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE----SNPDIMLLAARALTHLCDVLPSSCAAVV-HY 98 (1720)
Q Consensus 24 ~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~----~~~eiq~~AaraLtNL~~~~p~~~~~vV-~~ 98 (1720)
..++....+|+++||+++.... ...+.+...|..+.+++.|+.. .+.++++..+|.|--++...++....++ ++
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3488999999999999999853 2225688889999999999865 2689999999999998888888777666 44
Q ss_pred ccHHHHHHHHhcC----------------CcHHHHHHHHHHHHHhhccCcchh--hhcCchhHHhhhhccC---------
Q 000286 99 GAVTCFVARLLTI----------------EYMDLAEQSLQALKKISQEHPTAC--LRAGALMAVLSYLDFF--------- 151 (1720)
Q Consensus 99 GaVp~Lv~kLL~~----------------~~~dl~Eqal~aL~nIS~~~~~~I--l~~GgL~~LL~lLd~~--------- 151 (1720)
+++..|++.|-.+ ...++...++.+|-||....+... .....++.++..|...
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 6777666444211 245667789999999988877644 3555666666554322
Q ss_pred ChHHHHHHHHHHHHhccCC----------------CCchhHHHhCcHHHHHHhhccC-C---HHHHHHHHHHHHHHHhhc
Q 000286 152 STGVQRVALSTAANMCKKL----------------PSDAADFVMEAVPLLTNLLQYH-D---AKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~----------------~~~~~~~v~~~lP~L~~LL~~~-D---~~V~e~A~~aLs~L~~~~ 211 (1720)
.......++.++.|+-... ...+...+...+-.|-..|... + .+.+.-.+.+|.+++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~- 280 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA- 280 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh-
Confidence 2356677888888873210 0122222333333333333322 2 25677777888888885
Q ss_pred CCCHHHHHHHHh----------------CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000286 212 ASSPDKLDELCN----------------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 212 ~~~~~~~~~li~----------------~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
+....+.+-. ..+-.+|++|+.+. .+.+...+...|-.||..+..
T Consensus 281 --~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---------~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 281 --AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---------DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred --cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---------CchHHHHHHHHHHHHHhhhHH
Confidence 3322222221 13777888888775 255777777777778766544
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.089 Score=54.39 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=102.1
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+...+.+..||.=++...+.+.|....--|.|++= .|-+...+.+..++..++ .-++-++.-+.|-++..|+|+|-
T Consensus 10 hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFv-dsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 10 HGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFV-DSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred ccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHH-HHhhcccHHHHHHhHHHHHhhcc
Confidence 3466777899999999877788998877777778764 566777888999999999 77888999999999999999999
Q ss_pred cCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+..+ .|.+++|++.++..+......+.-.|+.++..+|-..
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 8775 6999999999999999888888888999999999854
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.34 Score=61.73 Aligned_cols=242 Identities=16% Similarity=0.200 Sum_probs=149.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH---hcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHHhhcc
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEML---SIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTHLCDV 87 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL---~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq---~~AaraLtNL~~~ 87 (1720)
+-.++..|++. -+..+.+|+.-++.+. .++.+..+ +--.|+ .|.+-|..+ .||+. +-|..||+|...-
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~--m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKL--MGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHH--HHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 34556677776 6777777776665543 34433221 222222 356666544 57764 4666677776532
Q ss_pred CCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhh---hhccCChHHHHHHHHHHH
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLS---YLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~---lLd~~~~~vqr~Al~aLs 164 (1720)
.. -..-+ .+.+|.|. -.|......++|.|+..++.||...+..|-.-.=+..|.. +|....-++.|.|+.++.
T Consensus 875 ~k-m~pPi--~dllPrlt-PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 875 TK-MTPPI--KDLLPRLT-PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cc-cCCCh--hhhcccch-HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 21 11112 36889998 8888999999999999999999998876544444444444 444667889999999999
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
.+++-..+. +++.+|.+-|..++..-......+|+-.++-+ . -..++|.|++--..+
T Consensus 951 ~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c--~--------pFtVLPalmneYrtP------- 1007 (1172)
T KOG0213|consen 951 YIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC--G--------PFTVLPALMNEYRTP------- 1007 (1172)
T ss_pred HHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhc--C--------chhhhHHHHhhccCc-------
Confidence 988755433 46777777777766555544444444444320 0 012455555544443
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
..+++..+|++|+.+-..--+....-| .-+.|.|...|...+..
T Consensus 1008 --e~nVQnGVLkalsf~FeyigemskdYi-yav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 1008 --EANVQNGVLKALSFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhHHHHHhhccccHH
Confidence 467999999999987643323222222 23567788888766553
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.84 Score=57.70 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=125.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHH----HHHHHHHHHhh-ccC
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM----LLAARALTHLC-DVL 88 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq----~~AaraLtNL~-~~~ 88 (1720)
++.+++.....+++..+..+++.++-++....... ..+.++..+..-+........+ ...+|+..-+. .+.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 44555555555578889999998886665532211 2223444444444111122333 33445444333 222
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-----------hhhc----CchhHHhhhhccCCh
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-----------CLRA----GALMAVLSYLDFFST 153 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-----------Il~~----GgL~~LL~lLd~~~~ 153 (1720)
| .... .+..|+ .++.. .++...+..+++-|..+.+.. ..+. -.++.+++.....+.
T Consensus 267 ~-~~~~-----~~~~L~-~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 P-LATE-----LLDKLL-ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred c-hHHH-----HHHHHH-HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 2 1111 344566 55554 788999999999999884431 1122 245555555555555
Q ss_pred HHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHH
Q 000286 154 GVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAAT 232 (1720)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~ 232 (1720)
..+.+.+.+++++.++.|..-. ..+..++|.|..-|..+|.+++..++.+|..+... .++.+..-++ .+|++|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~---~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE---APELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHH-HHHHHHHh
Confidence 5777889999999998874432 33567999999999999999999999999999985 5555555333 46666655
Q ss_pred h
Q 000286 233 L 233 (1720)
Q Consensus 233 L 233 (1720)
+
T Consensus 414 l 414 (415)
T PF12460_consen 414 L 414 (415)
T ss_pred c
Confidence 3
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.52 Score=62.42 Aligned_cols=231 Identities=16% Similarity=0.105 Sum_probs=152.6
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhcc-C
Q 000286 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF-F 151 (1720)
Q Consensus 76 ~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~-~ 151 (1720)
.|...|.-+.+-.|=.+...+.-|+.|..+ |||+++-.+|+---+-.-.+|-.-.+. .+++.+|-...+++|+. .
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVL-KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVL-KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHH-HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 455555555665565555667779999999 999999999987666666677443343 57888888888888875 3
Q ss_pred ChH-HHH-HHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcH
Q 000286 152 STG-VQR-VALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLV 227 (1720)
Q Consensus 152 ~~~-vqr-~Al~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll 227 (1720)
... -|| .|+.+|+-+|++-+..+..... +.+-+=...|+.+ ++-+..=+|.||.+|=.. .++..-.=...++.
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d---~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED---YDEARWSGRRDNAH 644 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh---cchhhhccccccHH
Confidence 332 444 5888899999986655544444 4555445556664 577788899999999886 33333344466789
Q ss_pred HHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC----CHHHHHHH------------HHcCChH---HHHHhhcCC
Q 000286 228 TQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG----SPLCAKTL------------LHLGISG---ILKDILSGS 288 (1720)
Q Consensus 228 ~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~----s~~~t~~L------------l~~gil~---~L~~LL~~~ 288 (1720)
.+|..+|..+ .+++...|+-+|+.+..+ .++++..+ +|..+.. .+..+++..
T Consensus 645 ekL~~~LsD~---------vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg 715 (1387)
T KOG1517|consen 645 EKLILLLSDP---------VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG 715 (1387)
T ss_pred HHHHHHhcCc---------cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc
Confidence 9999999876 688999999999999886 45555544 3333332 222233322
Q ss_pred Cc----ccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 289 GV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 289 ~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
.+ +...+++..+.|...++.-+.. ..++|..
T Consensus 716 splvr~ev~v~ls~~~~g~~~~~~~va~--n~~~~~~ 750 (1387)
T KOG1517|consen 716 SPLVRTEVVVALSHFVVGYVSHLKVVAG--NYLLPES 750 (1387)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhHHHhh--hhcccch
Confidence 21 1222333446677777776666 6666644
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.4 Score=61.96 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=107.3
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHH-hCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhc
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV-MEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v-~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
.=+...+++.|..-++..++.+|..++.++-......+ +..+ +.++|.|.++ +++++..|+.+++.||..+++.
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~- 459 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR- 459 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-
Confidence 34445567767777777889999999999998886544 3444 4689999999 7788999999999999999964
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
++...-.+.+..+.+-+... .+.+...++++..++..-...- +.++-.+++|.+.-+.....
T Consensus 460 ------lD~~~v~d~~lpi~~~~~~~---------dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~-- 521 (700)
T KOG2137|consen 460 ------LDKAAVLDELLPILKCIKTR---------DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS-- 521 (700)
T ss_pred ------HHHHHhHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc--
Confidence 22222112233333433333 5778888888888776543332 34555667777766654322
Q ss_pred cccccccccCCCHHHHHHHHHHhhccCCCCCC
Q 000286 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 323 (1720)
Q Consensus 292 ~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1720)
-+.+|--.++..|..++-.+++
T Consensus 522 ----------L~~~Qy~~~m~~i~~ml~~ie~ 543 (700)
T KOG2137|consen 522 ----------LNGEQYNKYMSEIRLMLSAIEK 543 (700)
T ss_pred ----------ccHHHHHHHHHHHHHHHhhhhH
Confidence 2568888888888888777665
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=49.97 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccH-HHH
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV-TCF 104 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaV-p~L 104 (1720)
||.++-.++..++.++..-++ ..+.++|.+..+|.++ ++.++..|..+|+.+..... +--.|-+ ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~------~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN------LVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM-----IKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH------HHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHH
Confidence 578899999999999887542 3567899999999988 59999999999999986432 2222433 677
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcc-CcchhhhcCchhHHhhhhcc
Q 000286 105 VARLLTIEYMDLAEQSLQALKKISQE-HPTACLRAGALMAVLSYLDF 150 (1720)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~-~~~~Il~~GgL~~LL~lLd~ 150 (1720)
+ .++.-++.+++..|..++..++.. .++.+ ...++.++..|..
T Consensus 69 l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 69 L-KLLVDENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLNN 112 (178)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHhC
Confidence 7 788889999999999999999987 55444 2345555555543
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.063 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=32.6
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
.+++.|+++.++.+|...+..+++.|+|++.|++.
T Consensus 7 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 68899999999999998899999999999999974
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.8 Score=50.89 Aligned_cols=236 Identities=14% Similarity=0.159 Sum_probs=129.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHH-------
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTH------- 83 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l---~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtN------- 83 (1720)
++.|-.+|..+ |..+..-|+.++..++..++...+ ..+...+++|.++.++..++ .++-..|...|..
T Consensus 84 mpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHH
Confidence 44555567776 778888899999999998864332 34567889999999998763 4444444333333
Q ss_pred ------------------------------------hhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 000286 84 ------------------------------------LCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127 (1720)
Q Consensus 84 ------------------------------------L~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI 127 (1720)
|.+.+|+....+-.+|.+..|...|-...+.-+.-.|+.....+
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 33445555555555555555554444445555555555555555
Q ss_pred hccC-c-chhhhcCchhHHhhhhccC--ChHHHHHHHHHHHHhccCCC-Cc-hhHHHhCcHHH----HHHhhccCCHHHH
Q 000286 128 SQEH-P-TACLRAGALMAVLSYLDFF--STGVQRVALSTAANMCKKLP-SD-AADFVMEAVPL----LTNLLQYHDAKVL 197 (1720)
Q Consensus 128 S~~~-~-~~Il~~GgL~~LL~lLd~~--~~~vqr~Al~aLsNlc~~~~-~~-~~~~v~~~lP~----L~~LL~~~D~~V~ 197 (1720)
+--+ . ..+-+.|.|..+.+.+... ++--.-.++-....+..+.. .+ ..+.+.+.+|+ -...+..+|+..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 5322 2 2455666666666655421 11111112222222222110 00 11112222222 2233567788888
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 198 EHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 198 e~A~~aLs~L~~~~~~~~~~~~~li~~g--ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
+.|.-++..+.. +.+..+.+...| ...+++.-..+.+ ...-+..++++|.+|+.
T Consensus 322 eaAiDalGilGS----nteGadlllkTgppaaehllarafdqn--------ahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 322 EAAIDALGILGS----NTEGADLLLKTGPPAAEHLLARAFDQN--------AHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHhccC----CcchhHHHhccCChHHHHHHHHHhccc--------ccchHHHHHHHHHHhhc
Confidence 888888877765 455666666665 3455555444442 22346778888888775
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.69 Score=59.82 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=138.9
Q ss_pred cchHHHHHHH----hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 11 SGRLKKILSG----LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 11 ~~~l~~Ll~~----L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
...++.|++. |++. ++.+.|.+++.+-.+.-.. ....++.+||++|.. +.++|....++|.-|+.
T Consensus 282 d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRS--NREVQYVVLQNIATISI 350 (968)
T ss_pred CccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHh
Confidence 4566677776 3566 8999988887775443321 345679999999985 47888887777777765
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1720)
..|. +. -|.|-...+.+.+ ..+.--=+..|.+|+....- .|+ .-+..|+...+-.+--.|+.++.
T Consensus 351 ~~~~----lF----~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL-----rE~q~YI~s~d~~faa~aV~AiG 417 (968)
T KOG1060|consen 351 KRPT----LF----EPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL-----RELQTYIKSSDRSFAAAAVKAIG 417 (968)
T ss_pred cchh----hh----hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH-----HHHHHHHhcCchhHHHHHHHHHH
Confidence 4441 11 1222211222222 33444445566666654432 343 34566776655568888899999
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
.|+..... .-..|+..|+.+|.+.|..|+..+...|-.|... +|....++ +.+|..+|.+-
T Consensus 418 rCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~---~p~~h~~i-----i~~La~lldti------- 478 (968)
T KOG1060|consen 418 RCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK---DPAEHLEI-----LFQLARLLDTI------- 478 (968)
T ss_pred HHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh---ChHHHHHH-----HHHHHHHhhhh-------
Confidence 98875422 2235889999999999999999999999999985 66555444 46777777443
Q ss_pred CCChhHHHHHHHHHHHHhcCCHH
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
.-+..+-.++|+++-.|.--+.
T Consensus 479 -~vp~ARA~IiWLige~~e~vpr 500 (968)
T KOG1060|consen 479 -LVPAARAGIIWLIGEYCEIVPR 500 (968)
T ss_pred -hhhhhhceeeeeehhhhhhcch
Confidence 1345666778888888765433
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.4 Score=55.53 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=117.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 19 SGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 19 ~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
++|-.+ +|++--.-+.++|-+.+...-..+ +-|..|++|.|.-+|++.+ ..++....-.+.-|+...|+.+..--=-
T Consensus 653 E~lge~-ypEvLgsil~Ai~~I~sv~~~~~m-qpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWM 729 (975)
T COG5181 653 ENLGED-YPEVLGSILKAICSIYSVHRFRSM-QPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWM 729 (975)
T ss_pred HhcCcc-cHHHHHHHHHHHHHHhhhhccccc-CCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence 344443 788777777888877776543322 3467899999999999875 8899899999999999888754420000
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-Ccchh-------------------------h-hc-C---chhHHhhh
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQE-HPTAC-------------------------L-RA-G---ALMAVLSY 147 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~-~~~~I-------------------------l-~~-G---gL~~LL~l 147 (1720)
-+-=-|+ .+|.+-+.+++..|..+++.||+- .|..| + +. | +++.++.=
T Consensus 730 RIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d 808 (975)
T COG5181 730 RICFELV-DSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD 808 (975)
T ss_pred HHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc
Confidence 0111244 566688999999999999999874 22111 1 11 1 12222221
Q ss_pred hccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 148 LDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
-......+|.-.+.+++-+...........+--+.|.|...|...|+--..-|...+..|+-+
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 122344566666666666555444444455666677777777777766666666666666654
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.9 Score=48.30 Aligned_cols=261 Identities=15% Similarity=0.111 Sum_probs=152.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV--DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~--~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+.+.+++..|.+- .|.++..|+..+..+... ..+.+.. ...++.|.+++.... + -..|+++|.|++.. .
T Consensus 3 s~l~elv~ll~~~-sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~ 73 (353)
T KOG2973|consen 3 SELVELVELLHSL-SPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-E 73 (353)
T ss_pred hHHHHHHHHhccC-ChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-H
Confidence 3567888888887 899999999888655444 2333332 236889999998653 3 44899999999864 2
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h---hhh----cCchhHHhhhhccCCh--HHHHH
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A---CLR----AGALMAVLSYLDFFST--GVQRV 158 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~---Il~----~GgL~~LL~lLd~~~~--~vqr~ 158 (1720)
.....+++. .+..++ ..+..+.-.+++-.+..|.|++++... . .+. .|.+.....+.+..-. .-.-.
T Consensus 74 ~l~~~ll~~-~~k~l~-~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLM-DMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHH-HHHHHH-HHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 344455544 555555 444455568899999999999998664 1 222 3333444444442211 12234
Q ss_pred HHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHhC--CcHHHHHHhh
Q 000286 159 ALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLE-HASVCLTRIAEAFASSPDKLDELCNH--GLVTQAATLI 234 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e-~A~~aLs~L~~~~~~~~~~~~~li~~--gll~~Lv~LL 234 (1720)
...+++|+.+......+......+|.=.-+ +...|..|.. .+...|-|.|- +......+++. .+++.|..=|
T Consensus 152 lA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF----d~~~h~~lL~e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF----DAKLHEVLLDESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc----cchhHHHHhcchHHHHHHHHhhc
Confidence 566778888766555555555555433333 3445665554 34455556554 33333444432 2343333222
Q ss_pred cCCCCCC-----------------CCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 235 STSNSGG-----------------GQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 235 ~~~~~~~-----------------~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
...+.-+ -...-++.+....+-+|-.||+.-.. .+.+-+.|+-++|..+=...
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWE 297 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCC
Confidence 1110000 01234678899999999999976433 34555678777777755443
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.7 Score=53.61 Aligned_cols=260 Identities=13% Similarity=0.136 Sum_probs=167.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
-+-++-++..|....++.+|.-|++.+..+.. +.+++..+...+++-.|+.+|-+ -|.....+.-.|+.+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta--n~~Cv~~~a~~~vL~~LL~lLHS--~PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATA--NKECVTDLATCNVLTTLLTLLHS--QPSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhc--ccHHHHHHHhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHhc-CcH
Confidence 34566677778877799999999999965444 46788888899999999999964 36777777778888775 455
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--------------hhhhcCchhHHhhhhcc---
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--------------ACLRAGALMAVLSYLDF--- 150 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--------------~Il~~GgL~~LL~lLd~--- 150 (1720)
-......+|++.-+...+-.+.....+-|+...|+++-.+ .|. .+++.|- .+.+..+..
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCC
Confidence 6667778888776664555566677778888888877554 111 0222221 222222210
Q ss_pred --------------------------------------------------------------------------------
Q 000286 151 -------------------------------------------------------------------------------- 150 (1720)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (1720)
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence
Q ss_pred -------------CChHHHHHHHHHHHHhccCCCC-chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 151 -------------FSTGVQRVALSTAANMCKKLPS-DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 151 -------------~~~~vqr~Al~aLsNlc~~~~~-~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
...+.......++.-+.+..|. .+..---+-+|.++..+.+.+..+=..|+..|-.|+. +.-
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse----n~~ 2079 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE----NQF 2079 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh----ccH
Confidence 0001111111111222221111 1111113457888888777777677788888888888 677
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA-SGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa-s~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
..+++.....+..++.+|... +...--|+.+|-.+. +...+...+.+++|+++.|.+||.+...
T Consensus 2080 C~~AMA~l~~i~~~m~~mkK~----------~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL 2144 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQ----------PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTL 2144 (2235)
T ss_pred HHHHHhccccchhhHHHHHhc----------chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccc
Confidence 788888888888888888653 234445666665543 5567788889999999999999987653
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.1 Score=56.56 Aligned_cols=279 Identities=17% Similarity=0.176 Sum_probs=176.4
Q ss_pred CCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--CC-CHHHHHHHHHHHH
Q 000286 6 SSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--ES-NPDIMLLAARALT 82 (1720)
Q Consensus 6 ~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~--~~-~~eiq~~AaraLt 82 (1720)
+.|..+.-++.|++.+.++ |+.|+--|..|.+++....-+ .....++.+..+|-. +. ..-.....+.||+
T Consensus 885 ~vgnl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLG 957 (1233)
T KOG1824|consen 885 AVGNLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAEEGTRNVVAECLG 957 (1233)
T ss_pred hcCchHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhh
Confidence 3445567778888888664 888888888888888765433 112334455555531 11 2334667889999
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVAL 160 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al 160 (1720)
-++...|+. .+|.|- .++.++....+--++.+......+.+. .++....+...+.++...+.++.|.|+
T Consensus 958 kL~l~epes--------LlpkL~-~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaL 1028 (1233)
T KOG1824|consen 958 KLVLIEPES--------LLPKLK-LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVAL 1028 (1233)
T ss_pred hHHhCChHH--------HHHHHH-HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 999988865 688888 888999999999899999887777664 355555677788888999999999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCC----------------------HHHHHHHHHHHHHHHhhcCCCHHHH
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHD----------------------AKVLEHASVCLTRIAEAFASSPDKL 218 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D----------------------~~V~e~A~~aLs~L~~~~~~~~~~~ 218 (1720)
.++...+.+.| ..+++.+|.|...|.++. -++...|.-|+..|.+.. -+++
T Consensus 1029 vv~nSaahNKp----slIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc---ld~~ 1101 (1233)
T KOG1824|consen 1029 VVLNSAAHNKP----SLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC---LDRL 1101 (1233)
T ss_pred HHHHHHHccCH----hHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh---hhhc
Confidence 99998887765 356777777766664321 246667777877777741 1111
Q ss_pred HHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc
Q 000286 219 DELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP 298 (1720)
Q Consensus 219 ~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~ 298 (1720)
+.. ..+..+..=|.. -..++.-..-+|..++.-+|.....-++. +++.|...++.-.+ ..++-.
T Consensus 1102 dit---~Fl~~~~~GL~D----------hydiKmlt~l~l~rLa~lcPs~VlqrlD~-l~EpLr~t~~~k~k--~~svKq 1165 (1233)
T KOG1824|consen 1102 DIT---EFLNHVEDGLED----------HYDIKMLTFLMLARLADLCPSAVLQRLDR-LVEPLRKTCTLKVK--ANSVKQ 1165 (1233)
T ss_pred cHH---HHHHHHHhhcch----------hhHHHHHHHHHHHHHHhhCcHHHHHHHHH-HHHHHHHHhhcccc--cchHhH
Confidence 100 011111111211 13466667777888888888877665552 45566666654332 111100
Q ss_pred ccCCCHHHHHHHHHHhhcc--CCCCCC
Q 000286 299 ALSRPAEQIFEIVNLANEL--LPPLPQ 323 (1720)
Q Consensus 299 i~~~~~~qi~~vi~li~~L--LP~L~~ 323 (1720)
=.....+....+++.+..| +|..++
T Consensus 1166 E~ek~~eLkRSAlRav~~L~~ip~v~~ 1192 (1233)
T KOG1824|consen 1166 EFEKQDELKRSALRAVAALLTIPEVEK 1192 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccc
Confidence 0112455667777777777 554433
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.2 Score=53.86 Aligned_cols=210 Identities=15% Similarity=0.254 Sum_probs=139.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~ 97 (1720)
++.+.-+.-+..+..|++.+|-... ...+..+ .-+++..|+++.... ..++-..-..+|+-++..+|+..... +
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~-~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~-~ 569 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCK---VKVLLSL-QPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM-E 569 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccC---ceecccc-chHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh-h
Confidence 3444433345666677776665541 2222222 224566666666544 46777677788999999998776543 4
Q ss_pred cccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcch-hhhcCchhHHhhhhccCC----hHHHHHHHHHHHHhccCCC
Q 000286 98 YGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPTA-CLRAGALMAVLSYLDFFS----TGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 98 ~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~~-Il~~GgL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~ 171 (1720)
+-+.|.+++-. ..++++-++.++--+++.++....+. =...-.||.+++.|+-.. +..+-.|+-++.-+.|+.+
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 45677776433 34667888888888888888743331 334456888999887544 7788888888888888665
Q ss_pred Cc-hhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-C-----cHHHHHHhhcC
Q 000286 172 SD-AADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-G-----LVTQAATLIST 236 (1720)
Q Consensus 172 ~~-~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-g-----ll~~Lv~LL~~ 236 (1720)
++ .-..+.-++|.+.++ |+++|...+.++--||..++.. ..+++..--.. | ++..+-+||..
T Consensus 650 ~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~---~~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 650 SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV---TLEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc---CHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 44 445567899999999 7778899999999999999885 55544443332 2 34455555543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=93.31 E-value=9.7 Score=49.34 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc
Q 000286 31 VEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT 110 (1720)
Q Consensus 31 l~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~ 110 (1720)
.+-|-+.+++|....... .....-..++..-+. +...+..|+..|..+...-|+.... ||.+++ .|.+
T Consensus 2 ie~lY~~~~~L~~a~d~~----~~~~~y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~-DLcE 69 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKS----QHEEDYKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQL-DLCE 69 (556)
T ss_dssp HHHHHHHHHHHHHTGGGG----GGHHHHHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHH-HHHT
T ss_pred HHHHHHHHhHhhcCCCcc----cCHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHH-HHHh
Confidence 355667778887653210 111123333344442 5889999999999999988877665 556777 8889
Q ss_pred CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000286 111 IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 111 ~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
-++..|+.||+..|-.||.+.++.|-+ ....|+|+|...+..-...+-++|..+.+.. ..+.+-.|...+.
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIE 140 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHH
Confidence 999999999999999999998765543 3456777776544333333334444443311 2333444444443
Q ss_pred ---cCCHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 191 ---YHDAKVLEHASVCLTRIAEAFAS----SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 191 ---~~D~~V~e~A~~aLs~L~~~~~~----~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
..|..+.+.++..|..-...+.. ..+..+.++ +..+-.+|..- +..-+..++.+|..+-.
T Consensus 141 ~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i----~~~ikkvL~DV---------TaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 141 SSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFI----VDEIKKVLQDV---------TAEEFELFMSLLKSLKI 207 (556)
T ss_dssp ---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHH----HHHHHHHCTT-----------HHHHHHHHHHHHTSGG
T ss_pred hcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHH----HHHHHHHHHhc---------cHHHHHHHHHHHHhCcc
Confidence 57788888877666433322111 112233332 44555555432 34444455555555433
Q ss_pred ----CCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCC
Q 000286 264 ----GSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP 339 (1720)
Q Consensus 264 ----~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~ 339 (1720)
.+..-.+.|++ .+.....-... +. ....+.|..+|..+..-+|....++
T Consensus 208 ~~~~~t~~g~qeLv~-----ii~eQa~Ld~~---f~-----~sD~e~Idrli~C~~~Alp~fs~~v-------------- 260 (556)
T PF05918_consen 208 YGGKQTIEGRQELVD-----IIEEQADLDQP---FD-----PSDPESIDRLISCLRQALPFFSRGV-------------- 260 (556)
T ss_dssp ---GSSHHHHHHHHH-----HHHHHHTTTS-----------SSSHHHHHHHHHHHHHHGGG-BTTB--------------
T ss_pred ccccCChHHHHHHHH-----HHHHHhccCCC---CC-----CcCHHHHHHHHHHHHHhhHHhcCCC--------------
Confidence 12333333332 22221110000 11 1134444445444444455332221
Q ss_pred cccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 340 VVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
.....+.-|...+||.|-++ ....|-..|.++.=|..|+.+...
T Consensus 261 -------------------------------~Sskfv~y~~~kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~ 304 (556)
T PF05918_consen 261 -------------------------------SSSKFVNYMCEKVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDA 304 (556)
T ss_dssp ---------------------------------HHHHHHHHHHTCCCTT----------HHHHHHHHHHHHHTT----TH
T ss_pred -------------------------------ChHHHHHHHHHHhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccH
Confidence 13455666668889988776 556788888888888888876443
Q ss_pred H
Q 000286 420 Q 420 (1720)
Q Consensus 420 ~ 420 (1720)
.
T Consensus 305 ~ 305 (556)
T PF05918_consen 305 R 305 (556)
T ss_dssp H
T ss_pred H
Confidence 3
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.14 E-value=16 Score=47.82 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=96.0
Q ss_pred cCcHHHHHHhhcC----C---CCHHHHHHHHHHHHHhhc--cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000286 55 DSFAPVLVGLLNH----E---SNPDIMLLAARALTHLCD--VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~----~---~~~eiq~~AaraLtNL~~--~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~ 125 (1720)
.|.++-++.+|.. + +|+--..-|.|.+.++.+ ..+.....+.++=+|+.++ --+.+++-=++-+|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~-P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI-PAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh-HhhcCcccchHHHHHHHHH
Confidence 5789999999942 1 222233356677777766 2233334455544555555 5557889999999999999
Q ss_pred HhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCch--hHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000286 126 KISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA--ADFVMEAVPLLTNLLQYHDAKVLEHASVC 203 (1720)
Q Consensus 126 nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~--~~~v~~~lP~L~~LL~~~D~~V~e~A~~a 203 (1720)
.++.|-++..+-..+.......+.+....++-.|+-|+.-+..+..... ..++.+.+..|..|-+.-+.+++..+.-.
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 9988888777767778888888888888899999888887777552211 22333444444444444455555544443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.2 Score=60.35 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHH
Q 000286 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCF 104 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~L 104 (1720)
+...+++..+|+.=.-..+.. ....+.|.++++.+.+ .+|++|..|.-||+-++..+.+.+.. ..|.|
T Consensus 895 Dd~~d~i~~icE~eLl~gek~----lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~ll 965 (1251)
T KOG0414|consen 895 DDLADLISGICEKELLYGEKS----LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLL 965 (1251)
T ss_pred hhHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHH
Confidence 444556666665333222221 2345788889888643 36999999999999999987766553 67899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 105 VARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
+..|-.++.+-++.+++-+|+-++-..|+.+=. --..+...|...++.++++|+-+++++.-+ +...+++.++-
T Consensus 966 ftimeksp~p~IRsN~VvalgDlav~fpnlie~--~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~e 1039 (1251)
T KOG0414|consen 966 FTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP--WTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSE 1039 (1251)
T ss_pred HHHHhcCCCceeeecchheccchhhhcccccch--hhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHH
Confidence 955555999999999999999999887764322 124456667788999999999999999864 55778999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 185 L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
+..+|..+++.|..-|-..+--|... . ..+. +++|.++.-|++.
T Consensus 1040 MA~cl~D~~~~IsdlAk~FF~Els~k---~----n~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1040 MALCLEDPNAEISDLAKSFFKELSSK---G----NTIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhc---c----cchh--hhchHHHHhhccC
Confidence 99999999999987776666666653 1 2222 4677777777665
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.1 Score=55.48 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=144.6
Q ss_pred CCCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 000286 5 ASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHL 84 (1720)
Q Consensus 5 ~~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL 84 (1720)
|...+-...+..|+++|.+..-...+..++.+||..+.. ..-...|...|++..+++.+.+.....+--.|+-|+.++
T Consensus 14 Gen~rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~ 91 (361)
T PF07814_consen 14 GENQRFADEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYV 91 (361)
T ss_pred hhhhhHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 334455668889999998654568899999999988875 233357889999999999996543333444555566666
Q ss_pred hccCCcchhhhcccccHHHHHHHHhcCC-------c-------------------------------------HHHHHHH
Q 000286 85 CDVLPSSCAAVVHYGAVTCFVARLLTIE-------Y-------------------------------------MDLAEQS 120 (1720)
Q Consensus 85 ~~~~p~~~~~vV~~GaVp~Lv~kLL~~~-------~-------------------------------------~dl~Eqa 120 (1720)
........+.+.+.+.+..++ +|+... . ..-+--|
T Consensus 92 l~~d~~~~~l~~~~~~~~ll~-~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 92 LSRDGLNMHLLLDRDSLRLLL-KLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred HccCCcchhhhhchhHHHHHH-HHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 655443444444555555555 666611 0 0111123
Q ss_pred HHHHHHhhc---cC--------------cchhhhcCchhHHhhhhcc----C------------ChHHHHHHHHHHHHhc
Q 000286 121 LQALKKISQ---EH--------------PTACLRAGALMAVLSYLDF----F------------STGVQRVALSTAANMC 167 (1720)
Q Consensus 121 l~aL~nIS~---~~--------------~~~Il~~GgL~~LL~lLd~----~------------~~~vqr~Al~aLsNlc 167 (1720)
+.||+.++. .. .+.+...||+..++..+.. . .......+++++=|..
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 344444421 00 0124556678888887741 1 1122334667777766
Q ss_pred cCCCCchhHHH---hCcHHHHHHh-hc---cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC---
Q 000286 168 KKLPSDAADFV---MEAVPLLTNL-LQ---YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS--- 237 (1720)
Q Consensus 168 ~~~~~~~~~~v---~~~lP~L~~L-L~---~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~--- 237 (1720)
......+...+ ...++.+... +. .....++..++..+.||+.. +++..+.+...+++..+..+...-
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~---n~~~c~~~~s~~l~~~~~~i~~~~~~~ 327 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN---NPSACEEFASPKLGQQLGLIVTSFFCV 327 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC---CccchHhhhhhHhccchHHHHHhhccc
Confidence 53332222221 1233333222 22 22344566777888888875 778877877776555543333210
Q ss_pred --CCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000286 238 --NSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1720)
Q Consensus 238 --~~~~~~~~ls~~i~~~alr~L~nLas~s~ 266 (1720)
.....+..-..++.+-++.+|.|++-.++
T Consensus 328 ~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 328 LSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccccccccchHHHHHHHhHHHheeeCc
Confidence 00001222345678888888889887665
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.59 Score=60.72 Aligned_cols=188 Identities=21% Similarity=0.207 Sum_probs=129.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--- 133 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--- 133 (1720)
+..+|.++++++ ++.++..|+-|+.++-... ...+.+.|.++.|- .|+..+++.|...|+.+|..|...+++
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~-~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALK-DLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhcCC---hhhccccchhHHHH-HHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 567777888876 5999999999999997654 45577889999998 888888999999999999999887764
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
..+..-.+..++.-+.+.+.--|-..+-++.+ ..+.++ .-...++..+...|+|....|+-.+...+.+++.-
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~---y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--- 269 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAE---YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--- 269 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH---
Confidence 22223334444444454444444333333333 334333 44566777888889999999999999999999985
Q ss_pred CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
.+. ....+-..+-+.++.++... + .++--+++-+..|....+.
T Consensus 270 ~~~-~~~~~~~K~~~pl~tlls~~---------~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 270 LKQ-VNELLFKKVAPPLVTLLSSE---------S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHH-HHHHHHHHhcccceeeeccc---------c-hhhHHHHhhHHHHHHhChH
Confidence 222 33344344666777777654 3 5677777766666655555
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.79 E-value=4 Score=51.49 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=142.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS-VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~-~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
.|+.. +|..+.--+..|.-+.+.. .+..+- ...+.+-|..+|.++ +.+++..+--+|.++.......-..+-..
T Consensus 175 riy~~-n~~tR~flv~Wl~~Lds~P---~~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d~~ 249 (675)
T KOG0212|consen 175 RIYVI-NPMTRQFLVSWLYVLDSVP---DLEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMDYD 249 (675)
T ss_pred HHhcC-CchHHHHHHHHHHHHhcCC---cHHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccCcc
Confidence 34444 7888877777775544432 222221 234678888899876 58999888888877764322111112334
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChH-HHHHHHH---HHHHhccCCCC
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTG-VQRVALS---TAANMCKKLPS 172 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~-vqr~Al~---aLsNlc~~~~~ 172 (1720)
..++.|+ .=+.++.+.+++-|+.=|..+-.-.++. ..-.|.+..+|..+...... +...+.. -+.-+|.....
T Consensus 250 ~~i~vlv-~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~ 328 (675)
T KOG0212|consen 250 DMINVLV-PHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL 328 (675)
T ss_pred cchhhcc-ccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 5788888 5567788899888877776666655553 44578888888888765443 3322221 12334442211
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
....-...++..|...|.++..+..-.++.-+..|-.. .+.++-. ....+.+.|..-|+.. +..++.
T Consensus 329 ~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~---~p~ql~~-h~~~if~tLL~tLsd~---------sd~vvl 395 (675)
T KOG0212|consen 329 KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK---APGQLLV-HNDSIFLTLLKTLSDR---------SDEVVL 395 (675)
T ss_pred ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh---Ccchhhh-hccHHHHHHHHhhcCc---------hhHHHH
Confidence 11123456788888889888777776666666655554 3332211 1235777888888765 688999
Q ss_pred HHHHHHHHHhcCCHH
Q 000286 253 GLIRLLSTCASGSPL 267 (1720)
Q Consensus 253 ~alr~L~nLas~s~~ 267 (1720)
.++..+++||..+..
T Consensus 396 ~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 396 LALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999987544
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.16 Score=52.10 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=60.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
++..|+++|...+++.....||-=|+.++...|+.+..+-+.|+=..++ .|+..++.+|+.+|+.|+..|-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM-~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM-ELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH-HHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
Confidence 7999999996665788888999999999999998877777778777777 99999999999999999988743
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.6 Score=57.13 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=135.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh----ccCCcch
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLC----DVLPSSC 92 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~----~~~p~~~ 92 (1720)
+..+|++-.-...+++|+.-|..+-...+. ....+-++|-+|.++.++ ..++|..|...|+-+. +..+...
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344444332346677777666544443322 244567899999999977 4899998877766665 3344333
Q ss_pred hhhcccccHHHHHHHHhcC-Cc-----------HHHHHHHHHHHHHhhc-------cCcc-------------hhhhcCc
Q 000286 93 AAVVHYGAVTCFVARLLTI-EY-----------MDLAEQSLQALKKISQ-------EHPT-------------ACLRAGA 140 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~-~~-----------~dl~Eqal~aL~nIS~-------~~~~-------------~Il~~Gg 140 (1720)
..+++ =..|.|- .|+.. .. ..++.+|..-|+.-=. +.++ .-+..++
T Consensus 502 niF~e-YlfP~L~-~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 502 NIFPE-YLFPHLN-HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hhhHh-hhhhhhH-hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 33443 4677777 66655 22 3455555554433211 1111 1233334
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhcc--C-CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCK--K-LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDK 217 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~--~-~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~ 217 (1720)
=..+..+|....+-+.|..+..|.-||. + ....++ +++.|...|+..|..+.-.-.--|..++--. .
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~-----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-G---- 649 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV-----ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-G---- 649 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----hHHHHHHHhcCccHHHHHHHHhhccceEEEE-e----
Confidence 4455566666777888888888999997 2 222232 6899999999999887754444444444311 0
Q ss_pred HHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000286 218 LDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 218 ~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
..-++..++|-|.+-|... .+.++..||.+|..||...
T Consensus 650 -~rs~seyllPLl~Q~ltD~---------EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 650 -WRSVSEYLLPLLQQGLTDG---------EEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred -eeeHHHHHHHHHHHhccCc---------chhhHHHHHHHHHHHHHhc
Confidence 0113445788888888876 4678999999999887654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=8.1 Score=48.92 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=117.9
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHH-hhcc-
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTH-LCDV- 87 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtN-L~~~- 87 (1720)
...-++-++..+++. ++.+|+.|+..+.+.+.....+.+ .-..|++..+..++.+.++..+... +..+-+ ++.-
T Consensus 248 ~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l--~~~s~il~~iLpc~s~~e~~~i~~~-a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLL--LYLSGILTAILPCLSDTEEMSIKEY-AQMVNGLLLKLV 323 (675)
T ss_pred cccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchh--hhhhhhhhhcccCCCCCccccHHHH-HHHHHHHHHHHH
Confidence 334566777888887 999999999999999988655433 3345666677777765433333332 222221 2211
Q ss_pred -CCcchhhhcccc-cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHH
Q 000286 88 -LPSSCAAVVHYG-AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 88 -~p~~~~~vV~~G-aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
.+..... ++.| +|..|. +.+..+.++-+-.|+.=+-.|-...++. +........|+.-|...+..+.-.++..+
T Consensus 324 s~~~~~~~-id~~~ii~vl~-~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLT-KYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred hhhhhccc-cchHHHHHHHH-HHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 1111112 4444 455555 8888888888888887777776666664 33455678888888888999999999999
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhc--cCCHHHHH-HHHHHHHHHHh
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQ--YHDAKVLE-HASVCLTRIAE 209 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~--~~D~~V~e-~A~~aLs~L~~ 209 (1720)
+++|...... +.++.+..+|+ .+|.++++ -+-..+..||-
T Consensus 402 a~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 402 ASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999865443 22555666543 34555443 23333344443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.8 Score=55.65 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=47.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+++.+.+++.+++ +.+...|+-|+.+|-...+ +.+.+.|.+-.+. .|+..+++.+...|+.+|..|-.+
T Consensus 127 ~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~-~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK---DLYHELGLIDILK-ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHH-HHhhCCCchHHHHHHHHHHHhchh
Confidence 35667777777663 7777777777777776544 2344556666666 667777777777777777777655
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=11 Score=43.33 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=131.3
Q ss_pred CCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHH-hhc------C----CCCHHHH
Q 000286 6 SSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG-LLN------H----ESNPDIM 74 (1720)
Q Consensus 6 ~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~-lL~------~----~~~~eiq 74 (1720)
+....+.++.+++..|.+. ..+..|+.+|++.......-..-..-..|....|.+ ++. - +.+..-.
T Consensus 20 ~~~~~~dk~~~~i~~l~~~---p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRV 96 (293)
T KOG3036|consen 20 SNASNNDKAYQLILSLVSP---PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRV 96 (293)
T ss_pred cccccccchhhHHHHhhCC---chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchH
Confidence 3445667788888888654 677889999998776433211111112232222221 111 1 1111222
Q ss_pred HHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC-----CcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHh
Q 000286 75 LLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-----EYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVL 145 (1720)
Q Consensus 75 ~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~-----~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL 145 (1720)
.. +-+|.-+....|+.+..++++. ||..+-.+|.. ++.-++-.++.+++.+...... ..+..+.++.|+
T Consensus 97 cn-aL~LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 97 CN-ALALLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HH-HHHHHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 22 3334444445677888888755 45444344443 4577888888888888776554 577899999999
Q ss_pred hhhccCChHHHHHHHHHHHHhccCC--------CCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 146 SYLDFFSTGVQRVALSTAANMCKKL--------PSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 146 ~lLd~~~~~vqr~Al~aLsNlc~~~--------~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
..+++.+...+..|+.++--+..+. ..+.|..+..++-.++.- ...++..++.+++.|..+|++ ++.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd----npr 250 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD----NPR 250 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----CHH
Confidence 9999999999999999877655432 234566666666666555 456789999999999999999 554
Q ss_pred HHHHH
Q 000286 217 KLDEL 221 (1720)
Q Consensus 217 ~~~~l 221 (1720)
....+
T Consensus 251 ar~aL 255 (293)
T KOG3036|consen 251 ARAAL 255 (293)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.44 Score=53.06 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=83.4
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--------CCCHHHHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--------ESNPDIMLLAARAL 81 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~--------~~~~eiq~~AaraL 81 (1720)
.......++..|+.. .... ..+..|+..|......=+..|...|.+..|+++|.. +.+.+++.++.+||
T Consensus 64 ~~~~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 64 AKSSPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp -CHHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 345666788888765 2221 777888777776543334788888999999998862 24578999999999
Q ss_pred HHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 82 THLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 82 tNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
..|+.........+-..++|..|+ ..+.++.+.++.+|+..|..||
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~-~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIA-LSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHH-HT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHH-HHHCCCCHHHHHHHHHHHHHHH
Confidence 999976543333445789999999 8889999999999999998876
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.1 Score=53.73 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=104.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccc-------c------ccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTF-------S------VDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~-------~------~~g~Vp~LV~lL~~~~~~eiq~~AaraLt 82 (1720)
.|+..++.. |...|+.-++.++.-++|.+....-.. . ...+.|-|-..|++. -.-+++++||+++
T Consensus 212 GlLyq~kr~-dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k-~emV~lE~Ar~v~ 289 (898)
T COG5240 212 GLLYQSKRT-DKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDK-FEMVFLEAARAVC 289 (898)
T ss_pred HHHHHHhcc-cHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCc-chhhhHHHHHHHH
Confidence 456667666 888899999999888887765321000 0 011344444444433 2568899999999
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-chhHHhhhhccCChHHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-ALMAVLSYLDFFSTGVQRVALS 161 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-gL~~LL~lLd~~~~~vqr~Al~ 161 (1720)
.++.-+ .....++ -+|..|- .+|.+...-++-.|+.+|..||...|..|..++ -+..| +...+-.+ ++.
T Consensus 290 ~~~~~n--v~~~~~~-~~vs~L~-~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL---Isd~Nr~I---sty 359 (898)
T COG5240 290 ALSEEN--VGSQFVD-QTVSSLR-TFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL---ISDENRTI---STY 359 (898)
T ss_pred HHHHhc--cCHHHHH-HHHHHHH-HHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH---hhcccccc---hHH
Confidence 988744 1122232 3667777 889999999999999999999998886544433 22222 22222222 233
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
++..+.+.-...........+|.++.=+...=+.|+.+|+..|+.+-
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 33333332222333334445555555554444555555555555443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.14 E-value=5.3 Score=53.93 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=124.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccc
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G 99 (1720)
.+-+. +...+.+|+..+-.++.... ....-...+++-.++++...+.|..+...|+-+|.-|+..........+ .+
T Consensus 261 ~~~s~-~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~ 336 (815)
T KOG1820|consen 261 EMLSK-KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KN 336 (815)
T ss_pred hhhcc-chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hh
Confidence 34454 89999999999999988654 2223445567888888888777888888999999999998876644433 26
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC--CchhHH
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDAADF 177 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~~~~ 177 (1720)
+.|.|..+|.+ ....+++.++.++-.++.-.+ -.-.++.++.++.+.++.+.-.+...+..+.+... ...-..
T Consensus 337 v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 337 VFPSLLDRLKE-KKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred hcchHHHHhhh-ccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 78888855543 455666666666655554221 11233445555666666655555444444444433 233345
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
+..++|.++...+..|..|...|..|++-+...
T Consensus 412 ~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 412 VKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999887774
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.95 E-value=27 Score=41.68 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=85.8
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH-HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD-FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~-~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~ 219 (1720)
+..++.++.+.++.+++.|+..+.++... +...+. .-...++.|..++...++ .+.|..++.|++. +....+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq----~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ----KEELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh----hHHHHH
Confidence 34577888888999999999999998876 322222 234578889999988877 8899999999998 677777
Q ss_pred HHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 000286 220 ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTL 272 (1720)
Q Consensus 220 ~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~L 272 (1720)
.+++. ++..++..+.... ...-..++.+|+|+++........+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~---------~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQ---------SPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HHHHH-HHHHHHHHhcCcc---------cchHHHHHHHHHHhccCchHHHHHH
Confidence 77766 8888888887652 2345567788899988766554433
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.76 E-value=4.9 Score=47.43 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=112.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC----cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLP----SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p----~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
+.|.|-.=|..+ +..++..||.-+..|.+.+. ..+..||++|+.|.++ -.+--++.+++..|+..|..|+.-..
T Consensus 83 lmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklil-dcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL-DCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 444444444444 46788899999988888765 2334588999999999 77788899999999999999998655
Q ss_pred c--hhhhcCchhHHhhh-h-ccCChHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 000286 133 T--ACLRAGALMAVLSY-L-DFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTR 206 (1720)
Q Consensus 133 ~--~Il~~GgL~~LL~l-L-d~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~ 206 (1720)
. .|+....+..+-.. | ...+.-+.-..+..+..+..-.+ ........+.+..|..=|.- .|.-|+.+++-.+..
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 3 57776655443211 1 11111112223333333333222 12222234556555555665 677777777777778
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCC
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~ 238 (1720)
|+. .....+-+...|+++.+.+++.-.+
T Consensus 241 Lae----teHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 241 LAE----TEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred HHH----HhhhhhhcchhhHHHHHHHHhhCCC
Confidence 887 3445666777899999999987653
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.07 E-value=19 Score=46.32 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC--------------------------CHHHHHHHH
Q 000286 25 GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES--------------------------NPDIMLLAA 78 (1720)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~--------------------------~~eiq~~Aa 78 (1720)
+|...+++|+..|++ .+ ..+ .+....+.|.|..+|..-- +........
T Consensus 82 ~d~~~~l~aL~~LT~---~G--rdi-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 82 DDFDLRLEALIALTD---NG--RDI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hhHHHHHHHHHHHHc---CC--cCc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 366789999988863 22 223 2356677888887774100 111122334
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc--cCChHHH
Q 000286 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD--FFSTGVQ 156 (1720)
Q Consensus 79 raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd--~~~~~vq 156 (1720)
.-+.|+...+......-.-.+.|..+|.-.......+..+.|+..|.-|..-. .+-.+.+..++..|- ....+..
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~---~iP~~sl~~~i~vLCsi~~~~~l~ 232 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG---DIPSESLSPCIEVLCSIVNSVSLC 232 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC---cCChHHHHHHHHHHhhHhcccccc
Confidence 45566665554333321112455555533344445555577888887775421 122334455555553 2233667
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc------cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHH
Q 000286 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ------YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVT 228 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~------~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g--ll~ 228 (1720)
..+..++.|+|+..- -..++-.|+.+|. ..+..++..|+..|..+.-+. .......+--.- +++
T Consensus 233 ~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl~ 304 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVLP 304 (464)
T ss_pred hhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHHH
Confidence 778889999998432 2345677777772 345778888999988888762 122222222222 678
Q ss_pred HHHHhhcCC
Q 000286 229 QAATLISTS 237 (1720)
Q Consensus 229 ~Lv~LL~~~ 237 (1720)
.+..-|...
T Consensus 305 sl~~al~~~ 313 (464)
T PF11864_consen 305 SLLNALKSN 313 (464)
T ss_pred HHHHHHhCC
Confidence 888888765
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.5 Score=48.04 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=92.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.+++.|+++|+.+.+..+..+|.|+|+.|-...| .+...+..+ .+. .-......+.....+ ....++. ..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-~~~k~~~~~-~~~---~~~~~~~~~~~~~~l-~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDP-YKHKSIQKS-LDS---KSSENSNDESTDISL-PMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-HHHhccccc-CCc---cccccccccchhhHH-hhccCCC-chHHH
Confidence 3688899999988889999999999999977666 333222111 000 000000111111111 1111111 12233
Q ss_pred hhcCchhHHhhhhccCChHHH-HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 136 LRAGALMAVLSYLDFFSTGVQ-RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vq-r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
.-..++..|+..|...+...+ ..++.++.+++.............++|.+.+.++..+....+...+-|+.|+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444467778888876554433 35788889998876667788899999999999998877888888888877764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.2 Score=44.39 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 156 QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
.+-++++|+.++...+..-......++|.+...+..+|.+|...||.+|.+|+..+ ..+.+. . =..+...|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~-~-f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILP-Y-FNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHH-H-HHHHHHHHHHHHc
Confidence 34578888888887666666778899999999999999999999999999999862 222222 1 1257778888887
Q ss_pred CC
Q 000286 236 TS 237 (1720)
Q Consensus 236 ~~ 237 (1720)
..
T Consensus 79 D~ 80 (97)
T PF12755_consen 79 DP 80 (97)
T ss_pred CC
Confidence 65
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=89.46 E-value=3.7 Score=49.55 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=115.5
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH--
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD-- 176 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~-- 176 (1720)
+.+..|+..-+.+.+.++++.++.|||-.|--..+...+ .+..+++.+...+..++-.|+.++..+........+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 455556656667889999999999999998765543332 2555666666668889999999999988733222211
Q ss_pred -------HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh
Q 000286 177 -------FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1720)
Q Consensus 177 -------~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~ 249 (1720)
....++..|...|.+.+++++.-|+-++++|.-.-.-.+ ...++..|+-+--++.+. +..
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-------~~~vL~~Lll~yF~p~t~------~~~ 170 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-------PPKVLSRLLLLYFNPSTE------DNQ 170 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHcCcccC------CcH
Confidence 234588889999999999999999999999775311111 133455555554443211 212
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 250 TYTGLIR-LLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 250 i~~~alr-~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
-...+|. .+-..|..++.. |..+...+++++..+.....
T Consensus 171 ~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 2233332 344557666665 67777888999999887655
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.43 E-value=4.5 Score=49.41 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=113.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..++.+.+.|.+. ++.++-.|+..|.+ +.....++.|+.+|..+.+..+...|+++|..+-...
T Consensus 74 ~av~~l~~~l~d~-~~~vr~~a~~aLg~------------~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--- 137 (335)
T COG1413 74 EAVPLLRELLSDE-DPRVRDAAADALGE------------LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER--- 137 (335)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHc------------cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---
Confidence 3566666677665 78888888775532 3344679999999996557899999999999886422
Q ss_pred hhhhcccccHHHHHHHHhcCCc------------HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY------------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVA 159 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~A 159 (1720)
++..|+ .++.... ..++.+++.+|+++-. .-.+..++.++.+....+++.|
T Consensus 138 --------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 138 --------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred --------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHH
Confidence 366666 4444433 2456667777766643 3356777888887777888888
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..++..+.... ..+.+.+...+...+..+...++.++.++-.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 88888877643 4567888888999999999999999888776
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.40 E-value=7.3 Score=52.38 Aligned_cols=261 Identities=13% Similarity=0.151 Sum_probs=154.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.++.|...++-. .+.....++.+|..++... +..........+..+++.|+.-.+ ..|.....||++|+......
T Consensus 306 s~i~~L~~~~~l~-r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~s-~~~i~~~~CL~~i~~~~~~~ 381 (699)
T KOG3665|consen 306 SSIQALTYYLNLK-RPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFSS-SNQIQGSACLIHIVKHTKQR 381 (699)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcCC-hhhhhHHHHHHHHHHhhhhc
Confidence 3444454444443 5677778888888877753 111335556678888888875543 77777788898888765311
Q ss_pred hhhhcccccHHHHHHHHhcCC------cHHHHHH----------------------------------------------
Q 000286 92 CAAVVHYGAVTCFVARLLTIE------YMDLAEQ---------------------------------------------- 119 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~------~~dl~Eq---------------------------------------------- 119 (1720)
....-..-++..|++...... ...+.+.
T Consensus 382 l~~~~~~~~l~~LLn~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (699)
T KOG3665|consen 382 LSPLLVSLLLKVLLNLVEKLDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSIT 461 (699)
T ss_pred cChHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHH
Confidence 111111122233321111000 0111110
Q ss_pred ------------------------HHH-----HHHHhhccCcc---hhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHh
Q 000286 120 ------------------------SLQ-----ALKKISQEHPT---ACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1720)
Q Consensus 120 ------------------------al~-----aL~nIS~~~~~---~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1720)
+.. +|.++..+.+. .+++.||+..++..+. |....+++.++..+.|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~ 541 (699)
T KOG3665|consen 462 KVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNL 541 (699)
T ss_pred HhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 111 23355555554 6899999999999998 55678999999999999
Q ss_pred ccCCCCchhHHHhCcHH--HHHHhhccCC-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-------------------
Q 000286 167 CKKLPSDAADFVMEAVP--LLTNLLQYHD-AKVLEHASVCLTRIAEAFASSPDKLDELCNH------------------- 224 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP--~L~~LL~~~D-~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~------------------- 224 (1720)
+...+..........+. .+..++..-+ .+.--.|+..|+.|... .++........
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~---~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~ 618 (699)
T KOG3665|consen 542 AEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSD---SEKTTECVFRNSVNELLVEAISRWLTSEIR 618 (699)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhC---CCcCccccchHHHHHHHHHHhhccCcccee
Confidence 98654444333333322 4444554444 48888888888887763 11111111111
Q ss_pred ----CcHHH-HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000286 225 ----GLVTQ-AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 225 ----gll~~-Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
..+.. +..++..+ ..+..+.-|++++.+++...++..+.+.+.|.++.+..+-..
T Consensus 619 ~~~~~~f~~~~~~il~~s--------~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 619 VINDRSFFPRILRILRLS--------KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred ehhhhhcchhHHHHhccc--------CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 11222 33444333 256688899999999999999988888889988887775543
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.67 Score=56.77 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhh--cccccHHHHHHHHhcC------CcHHHHHHHHHHHHHhhcc------Ccchh
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAV--VHYGAVTCFVARLLTI------EYMDLAEQSLQALKKISQE------HPTAC 135 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~v--V~~GaVp~Lv~kLL~~------~~~dl~Eqal~aL~nIS~~------~~~~I 135 (1720)
....|..|+|++.||.++.-..+..+ ...-++-.++.+++.. ....|...++.+|+|+++- .....
T Consensus 446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e 525 (728)
T KOG4535|consen 446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE 525 (728)
T ss_pred hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH
Confidence 47889999999999987532222111 1112333444444433 2367888999999999762 11233
Q ss_pred hhcCchhHHhhhh-ccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000286 136 LRAGALMAVLSYL-DFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 136 l~~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL-~~~D~~V~e~A~~aLs~L~~ 209 (1720)
+..|.+..++.-. -.....+|=+|+.+++|+.++. +..+..-...++|+|..|+ ++.+-+|..+|..+|+--..
T Consensus 526 ~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 526 IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 4444444433322 2345678999999999999975 3444455667899999995 56789999999998876655
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.86 E-value=8.2 Score=51.11 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=127.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.++++-+..+..+ .+-++-.|++.|++++..-... .-+...+++..+.+.|++++ +-+-+.|.+.++-+|+..|
T Consensus 727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r~~~--~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~-- 800 (982)
T KOG4653|consen 727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKRKKA--TLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP-- 800 (982)
T ss_pred HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhcchh--hhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc--
Confidence 3466666667665 6788999999999999854322 23667789999999999874 8888899999988988655
Q ss_pred hhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcchhhh--cCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
..++|-|.+.-.+... .|.+--+=.|+.++.+..+..+.. +-.+..++.-++..+....-.++.++.+|
T Consensus 801 ------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 801 ------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred ------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 3477777753433322 233334446777777776664443 23345566666755555566789999999
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHhh
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQYHD-AKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~~D-~~V~e~A~~aLs~L~~~ 210 (1720)
|.-....-...+.+++-.+..+.+.++ .-+...|...+..+-.|
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 984432222356777777888877655 56667777777777776
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.60 E-value=13 Score=50.94 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=120.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcc---hhh
Q 000286 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPT---ACL 136 (1720)
Q Consensus 63 ~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~---~Il 136 (1720)
....+..+..+|.-|-+.|.-++.. + .....+.. -|..+.+.|+. ....-.+.-.+.||..|-..++. ..+
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~-~-s~~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSS-P-SGEGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC-C-chhhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333444689999999999999987 3 22222221 22233323322 33445566677888877766663 223
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHHHHhcc--C----CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCK--K----LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~--~----~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.......+|.+ ..++....++|..+|.++|. . ...+....+.+.++.|...+-.+...++...+.++..|...
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 33334444444 88899999999999999992 1 11223567888888888887666666665558888888875
Q ss_pred cCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 211 FASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 211 ~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
| .+.+..-.-.+++..++-.|... +..+...|++.+..++..-|+.
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s~---------sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLASN---------SREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHcCCHH
Confidence 3 22222222234556666666654 7889999999999998886665
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=88.13 E-value=4.3 Score=53.93 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh------------
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA------------ 94 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~------------ 94 (1720)
..+.+..+..+.+-|.|-+.+. ...+...|+.+|++ |++.-.|+.++.-++..++.....
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~-----s~~ia~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPE-----SSEIAEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcc-----cchHHHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 3556666777777777765432 23457788888874 567777888887777655432211
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
=.-..+||.|+ ..........+-.=+.+|.++-.+-|..++- .-.++.||+-|+-.+..+|-.++.++.-+....+
T Consensus 863 RfF~~ivP~l~-~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 863 RFFCDIVPILV-SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHhhHHHHH-HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 01246899999 5555777788888889999998888875443 3467888899999999999999999998888766
Q ss_pred CchhHHHhCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 172 SDAADFVMEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D---~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
.-.-.++.-++|.|..+=...| .-|.+.|+.|+.-|+.. -|...-.-....++..|+..|.+. ..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~---~P~~~l~~fr~~Vl~al~k~LdDk---------KR 1009 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR---LPTKSLLSFRPLVLRALIKILDDK---------KR 1009 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc---CCCcccccccHHHHHHhhhccCcH---------HH
Confidence 6666788899999999965555 67889999999999984 333333333445788888888765 24
Q ss_pred hHHHHHHHH
Q 000286 249 PTYTGLIRL 257 (1720)
Q Consensus 249 ~i~~~alr~ 257 (1720)
-+++.|+++
T Consensus 1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHH
Confidence 466666654
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.06 E-value=9.1 Score=47.66 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=119.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
..-+..+++++...+..+.+.+|+.+|=++++.+..-.+..+ -..++-.++++|.+..+.-+...|.|.|.-|+...|
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~- 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP- 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-
Confidence 345667777776655668888999999888887543333211 234677888999875568899999999999998544
Q ss_pred chhhhcccccHHHHHHHHhcCC----c--HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIE----Y--MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~----~--~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1720)
..+.+ -+--++| |+|+.. + ..++|++ |+.-++...|-..+.. +.+++.- -+...---++.++.
T Consensus 363 --~~l~D-stE~ai~-K~Leaa~ds~~~v~~~Aeed--~~~~las~~P~~~I~~--i~~~Ilt---~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 --ARLFD-STEIAIC-KVLEAAKDSQDEVMRVAEED--CLTTLASHLPLQCIVN--ISPLILT---ADEPRAVAVIKMLT 431 (516)
T ss_pred --Hhhhc-hHHHHHH-HHHHHHhCCchhHHHHHHHH--HHHHHHhhCchhHHHH--HhhHHhc---CcchHHHHHHHHHH
Confidence 33443 2223344 665543 2 2333333 3444455555432221 2222221 22222233555677
Q ss_pred HhccCCCCchhH-HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 165 NMCKKLPSDAAD-FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 165 Nlc~~~~~~~~~-~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.+|...+..... .+.+++|.++.--++....|...|..||..|+..
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 788776655543 4678999999999999999999999999999874
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=87.81 E-value=5.3 Score=43.42 Aligned_cols=128 Identities=12% Similarity=0.156 Sum_probs=95.7
Q ss_pred hhhhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccC--ChHHHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFF--STGVQRVALS 161 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~--~~~vqr~Al~ 161 (1720)
+..+++.|++..|+ ++++... .++...++.|+-.+-.+..- .++...-+..++.|+... +..+++.|+.
T Consensus 4 A~EFI~~~Gl~~L~-~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLI-KMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHH-HHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45677889999999 7776644 36777788888887654332 578888899999999854 5899999999
Q ss_pred HHHHhccCCCCchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 162 TAANMCKKLPSDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
++-+++-+.+.-...+.++ -++.|...|+..|++++.+|...+-.|--. .+++..+.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k--A~~~~r~~i~ 142 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK--ADDSKRKEIA 142 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CChHHHHHHH
Confidence 9999998655433333333 589999999999999999999888777765 2445554443
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.72 E-value=14 Score=47.84 Aligned_cols=238 Identities=17% Similarity=0.110 Sum_probs=137.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCH-HHHHHHHHHHHHhhccCCcchhhh
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNP-DIMLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~-eiq~~AaraLtNL~~~~p~~~~~v 95 (1720)
+.+.|.+. |+..+.-||..+.++=..+.-+ .+-+-+-++|-++++. -++..||-||..|...+|+...
T Consensus 116 iknDL~sr-n~~fv~LAL~~I~niG~re~~e--------a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~-- 184 (938)
T KOG1077|consen 116 IKNDLSSR-NPTFVCLALHCIANIGSREMAE--------AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN-- 184 (938)
T ss_pred HHhhhhcC-CcHHHHHHHHHHHhhccHhHHH--------HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC--
Confidence 34446666 8888999999887765543222 2233334677666554 4566899999999988775432
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHH---------------hhhhcc--CChHHHHH
Q 000286 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAV---------------LSYLDF--FSTGVQRV 158 (1720)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~L---------------L~lLd~--~~~~vqr~ 158 (1720)
-.+-+..++ .||.-.+..|.-.+...++-|+...++.- .++++.. ..|... ..+=.|.+
T Consensus 185 -~~~W~~riv-~LL~D~~~gv~ta~~sLi~~lvk~~p~~y--k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 -PGEWAQRIV-HLLDDQHMGVVTAATSLIEALVKKNPESY--KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -hhhHHHHHH-HHhCccccceeeehHHHHHHHHHcCCHHH--hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 225677788 88888888888888888999988766420 0111111 112211 24456777
Q ss_pred HHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC-----HHHH----HHHH-HHHHHHHhhcCCCHHHHHHHHhCCcHH
Q 000286 159 ALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD-----AKVL----EHAS-VCLTRIAEAFASSPDKLDELCNHGLVT 228 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D-----~~V~----e~A~-~aLs~L~~~~~~~~~~~~~li~~gll~ 228 (1720)
++.++.++=. +.+.......+..|-.+|+..+ ++|. .+|. .-..+++..+..+++.+.. .+.
T Consensus 261 l~rlLq~~p~---~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~~~ 332 (938)
T KOG1077|consen 261 LLRLLQIYPT---PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----AVN 332 (938)
T ss_pred HHHHHHhCCC---CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----HHH
Confidence 7777777622 2222223334444444444322 2222 2222 1122333322223333332 467
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+|.++|.+.+ .+++--++..++.||+... ++..++.. .+.+...|..+.
T Consensus 333 ~Lg~fls~rE---------~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkter 381 (938)
T KOG1077|consen 333 QLGQFLSHRE---------TNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTER 381 (938)
T ss_pred HHHHHhhccc---------ccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhcccc
Confidence 8889998874 4588888888888888733 33344433 667777776443
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.4 Score=44.24 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC
Q 000286 155 VQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~-~~~~v~~~lP~L~~LL~--~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~ 224 (1720)
+.+..+.+|+|+|-+.+.. +.....+.+|.|.+... ..++-+.+-|.||+-+|+++ ++++.+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG---NPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC---CHHHHHHHHhc
Confidence 3577899999999865433 44444578999988844 45699999999999999997 77777666543
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=87.64 E-value=4.3 Score=44.10 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=94.0
Q ss_pred cccccCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC--cHHHHHHHHHH
Q 000286 51 TFSVDSFAPVLVGLLNHESN-----PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE--YMDLAEQSLQA 123 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~-----~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~--~~dl~Eqal~a 123 (1720)
.|+..+.+..|++++.++.. .++...+..|+..+++..--++. .++.-.|...+ ...... +..+.+.|+..
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia-~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIA-SYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHH-HHHccccccchHHHHHHHH
Confidence 57888889999999987653 46777888899999987543443 45555566666 333333 58899999999
Q ss_pred HHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCch
Q 000286 124 LKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174 (1720)
Q Consensus 124 L~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~ 174 (1720)
|+++...++. .|-+.=-++.|+..|...+..+|.+|+..+--+..+.+...
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 9999887775 46666678999999999999999999999988888765544
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=87.38 E-value=12 Score=41.58 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCch-hHHhhhh
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGAL-MAVLSYL 148 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL-~~LL~lL 148 (1720)
++.++..+..+|+-|+.--| .+++ ..+|.+. ..|..+++.++.+|+.+|..+.... .+--.|-+ ..++..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve-~~~~~l~-~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVE-PYLPNLY-KCLRDEDPLVRKTALLVLSHLILED--MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHH-hHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcC--ceeehhhhhHHHHHHH
Confidence 47888899999999987655 3333 4578888 8899999999999999999997643 33333444 7778888
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000286 149 DFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 149 d~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
...+..++..|..++..+.....+.. +...+|-+...|+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~---i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNI---IYNNFPELISSLN 111 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHh
Confidence 88899999999999999988642222 3444444444444
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.33 E-value=10 Score=45.06 Aligned_cols=254 Identities=14% Similarity=0.108 Sum_probs=126.7
Q ss_pred HHHHHHHhccCCCCchhHHHhC-cHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhh
Q 000286 159 ALSTAANMCKKLPSDAADFVME-AVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLI 234 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~-~lP~L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL 234 (1720)
|+.|+.|+....+.....-.++ +--.++.++++ .+..++-+.+.|+--++- +++..+.+-.. +++.-|++++
T Consensus 169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf----~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF----SKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554333333322222 22334444433 367788888888877775 44444332222 5778888888
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHH
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGS--PLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 312 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~alr~L~nLas~s--~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~ 312 (1720)
... ....+..-|+.++.|+|..+ ..+.+.++..++.++...|+.+ .|+- +.+..-|+
T Consensus 245 k~~--------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~er-----kysD--------Eel~~di~ 303 (432)
T COG5231 245 KER--------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLER-----KYSD--------EELVIDIE 303 (432)
T ss_pred HHH--------HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhc-----CCCh--------HHHHHHHH
Confidence 654 14556777788888888855 3444666667788887777653 2211 11111111
Q ss_pred HhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHh
Q 000286 313 LANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYG 392 (1720)
Q Consensus 313 li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ 392 (1720)
.|...|-.-.....+.+.|...+..|-+.+.++. ...+- ...+.. .+.+++ -.|+..|++..+
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H----~~~dF---Ws~N~d--~l~kdn--------y~i~k~L~~~lq 366 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYH----HKKDF---WSTNLD--MLIKDN--------YEIVKVLKKYLQ 366 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcc----cccCc---hhhhHH--HHhhhh--------HHHHHHHHHHHh
Confidence 1111111100000000011111122333332220 00000 000011 111222 156777778877
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHh
Q 000286 393 SSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 393 ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
+.+.-..=.-++.-|.-.|-. .|+. .+++.....-.-|..++++.|+.+-..|||....+|.
T Consensus 367 ~n~~nt~i~vAc~Di~~~Vr~-~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 367 SNNPNTWICVACSDIFQLVRA-SPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred cCCCCceEeeeHhhHHHHHHh-CchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 776541111222223323322 3343 4566666777888999999999999999999998874
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=86.83 E-value=23 Score=41.32 Aligned_cols=204 Identities=19% Similarity=0.148 Sum_probs=120.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1720)
++|.|+.-+....+++++.....+|..++......... ++..|. .|......++.--++..+..+-...+...
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~-~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLV-SLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHH-HHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 35667776666778999999999999998765222222 334455 66666666665556666666655444322
Q ss_pred hcCchhHHhhhhc----------cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHH
Q 000286 137 RAGALMAVLSYLD----------FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLT 205 (1720)
Q Consensus 137 ~~GgL~~LL~lLd----------~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL-~~~D~~V~e~A~~aLs 205 (1720)
+.|..++..++ ....+.+....+++..+|...|. .-.++++.|..+| ++.++.+...++.++.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44555555411 11233444557788999987665 5677899999999 7888889999999999
Q ss_pred HHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHh
Q 000286 206 RIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDI 284 (1720)
Q Consensus 206 ~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~L 284 (1720)
.+|.. .--.+. ..-..+..-|+... .+.+.....+.++.+..+. +......+...++..+-++
T Consensus 148 ~Lc~~---~vvd~~-----s~w~vl~~~l~~~~--------rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~ 211 (234)
T PF12530_consen 148 PLCEA---EVVDFY-----SAWKVLQKKLSLDY--------RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEY 211 (234)
T ss_pred HHHHH---hhccHH-----HHHHHHHHhcCCcc--------chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhh
Confidence 99964 111111 12223333333321 3444444444444444443 2222334555666666666
Q ss_pred hcCCC
Q 000286 285 LSGSG 289 (1720)
Q Consensus 285 L~~~~ 289 (1720)
.....
T Consensus 212 ~~~~~ 216 (234)
T PF12530_consen 212 TSSSD 216 (234)
T ss_pred ccccc
Confidence 55444
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.22 E-value=29 Score=43.12 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=165.7
Q ss_pred CCHHHHHHHHHHHHHHHhc----CCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC--C-------c
Q 000286 25 GEEGKQVEALTQLCEMLSI----GTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--P-------S 90 (1720)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~~----~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~--p-------~ 90 (1720)
++|+.-+++=..|-.++.. .+-|-+ ..+..-..|+.|+.+|.++ |.+|-....-.|--+.+.. + .
T Consensus 89 dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAev 167 (536)
T KOG2734|consen 89 DNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEV 167 (536)
T ss_pred CCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHH
Confidence 4787777765444333322 223333 3577888999999999987 6898888777777777532 1 2
Q ss_pred chhhhcccccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhc---cCChHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLD---FFSTGVQRVA 159 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd---~~~~~vqr~A 159 (1720)
-+.++|+.++|+.|++.+-.-+ ..+=...++..++|+..-.+. .+++.|-+.-||.-+. .|+.. ...|
T Consensus 168 LidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~Ya 246 (536)
T KOG2734|consen 168 LIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYA 246 (536)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHH
Confidence 3456889999999985442221 133355678888888765553 5777777777776443 23333 3345
Q ss_pred HHHHHHhccCCC-CchhHHHhCcHHHHHHhh----cc-----CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000286 160 LSTAANMCKKLP-SDAADFVMEAVPLLTNLL----QY-----HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 160 l~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL----~~-----~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~ 229 (1720)
.-+++=+..+.. ......--+.+..|..-| .+ +..+..++...||+.+.. .+++.+.++..+.+.-
T Consensus 247 sEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm----~~~nr~~Fl~~EGlqL 322 (536)
T KOG2734|consen 247 SEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM----APANRERFLKGEGLQL 322 (536)
T ss_pred HHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc----ChhhhhhhhccccHHH
Confidence 555554444322 111111122333333222 12 146788888889888887 7888888888876655
Q ss_pred HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCChHHHHHhhcCCCc-ccccccccccCCCHHH
Q 000286 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP--LCAKTLLHLGISGILKDILSGSGV-SANSAVPPALSRPAEQ 306 (1720)
Q Consensus 230 Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~--~~t~~Ll~~gil~~L~~LL~~~~~-~~~~~~s~i~~~~~~q 306 (1720)
..-++... .-....++++|-.+..|.+ .....+++...+.++..++...+. ...... -..++
T Consensus 323 m~Lmlr~K----------k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~-----t~~e~ 387 (536)
T KOG2734|consen 323 MNLMLREK----------KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKI-----SADEH 387 (536)
T ss_pred HHHHHHHH----------HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccC-----cHHHH
Confidence 55555443 2356678899988888876 667778887777777777663221 111111 12344
Q ss_pred HHHHHHHhhccCCCC
Q 000286 307 IFEIVNLANELLPPL 321 (1720)
Q Consensus 307 i~~vi~li~~LLP~L 321 (1720)
...++..|+.++-.+
T Consensus 388 eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 388 EEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444555556666654
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=85.86 E-value=18 Score=43.69 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=105.4
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch
Q 000286 56 SFAPVLV-GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA 134 (1720)
Q Consensus 56 g~Vp~LV-~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~ 134 (1720)
+++..|| -.+++. ++.++..|.+||+-.+-.+.+.+.. .++.|. +.+......++..|+.+|..|..-++..
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~-~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFL-QALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 5566655 455555 5899999999999998766533332 466777 4457779999999999999998766643
Q ss_pred hh-----------hcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc----CCHHHHHH
Q 000286 135 CL-----------RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY----HDAKVLEH 199 (1720)
Q Consensus 135 Il-----------~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~----~D~~V~e~ 199 (1720)
++ ....+..+..+|+..+.++|-.|+-.++.+.-.....+ ...++..|+-+.-+ ++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ- 174 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ- 174 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH-
Confidence 22 23456677777888888999999999998776433222 12234444333222 2344443
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 200 ASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 200 A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
||+..-..|......-|..+....++.+..+....
T Consensus 175 ---~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 ---CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333333333344345555555677777766554
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=85.84 E-value=3.6 Score=38.87 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 000286 197 LEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276 (1720)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~g 276 (1720)
++.|+||+.+|+. .+.-++.+-+.++++.++++....+ ...++-.|+.+|+-|++. .+-.+.|-+.|
T Consensus 4 lKaaLWaighIgs----s~~G~~lL~~~~iv~~iv~~a~~s~--------v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS----SPLGIQLLDESDIVEDIVKIAENSP--------VLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc----ChHHHHHHhhcCHHHHHHHHHHhCC--------ccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5789999999998 7888888888999999999998764 456888999999988865 33334444444
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.1 Score=34.74 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=26.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~ 87 (1720)
++|.|+++|+++ +++++..|++||..|++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 489999999987 599999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=85.80 E-value=17 Score=45.43 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=123.8
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH---HhhccCcchhhhcCchhHHh--hhhcc
Q 000286 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK---KISQEHPTACLRAGALMAVL--SYLDF 150 (1720)
Q Consensus 76 ~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~---nIS~~~~~~Il~~GgL~~LL--~lLd~ 150 (1720)
.|.+.|-.+....+.....+.+.+++..|+++| .. .+-.+++ +....... ...-....+ ..+.+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl-~~-------Ev~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRL-QY-------EVDFALEENKNEEAGSGI---PPEYKESSVDGYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHH-HH-------HHHHHHhcccccCCCCCC---CCCcccccccccccCH
Confidence 467788888888888888899999999999444 22 2233333 22111110 000000000 11222
Q ss_pred CChHHHHHHHHHHHHhcc-CCC-CchhH-HH--hCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 151 FSTGVQRVALSTAANMCK-KLP-SDAAD-FV--MEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~-~~~-~~~~~-~v--~~~lP~L~~LL~~~D---~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
......|..+.++..++. ... ..... .+ ...+..|..++.+.. ..|...|+..++.++.. +|.....+.
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---ePT~~~~l~ 148 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EPTSFSILQ 148 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CCchhHHHH
Confidence 233445555666666665 221 11111 12 235667777788775 78999999999999986 999999999
Q ss_pred hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
++|+++.+++-+.... ..-+.++...+-.+|+.||=.+.. .+.+.+.+.++.+..++.+.
T Consensus 149 e~Gl~~~~L~~i~~~~-----i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKG-----ILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HcCChHHHHHHHhccC-----CCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCH
Confidence 9999999999997221 112567777777888888876555 46788899999999998753
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=85.57 E-value=2.9 Score=41.37 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=66.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..+++.+..|++. .+-++-.|+..|++++...+ ........++..+...|++++ +-+=+.|..+|+.|+...|+.
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence 4678899999876 88999999999999999876 122445667888888888874 889999999999999877742
Q ss_pred hhhhcccccHHHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARL 108 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kL 108 (1720)
++|.|++..
T Consensus 78 --------vl~~L~~~y 86 (92)
T PF10363_consen 78 --------VLPILLDEY 86 (92)
T ss_pred --------HHHHHHHHH
Confidence 677777443
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=85.56 E-value=1.5 Score=44.18 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCcchhhhcccccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcc
Q 000286 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPT 133 (1720)
Q Consensus 74 q~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1720)
+....++|+|++-.++.....|.+.|.||.+++.. .+-.++-++|.|+||+.|++..++.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 45678899999999998888999999999998543 2234588999999999999987774
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.52 E-value=12 Score=44.47 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=140.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhh
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
+++.+|-+.=|+-.++-|++.|.+++..-.-+.+ .......-.+++++|+..- ..++|....-|+.-+. .+++.++.
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i-~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKI-EWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHH
Confidence 3344442222677888888888887765322221 2224457788999997532 3678877766655443 34445432
Q ss_pred hcc-cccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccC---ChHHHHH---H---
Q 000286 95 VVH-YGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFF---STGVQRV---A--- 159 (1720)
Q Consensus 95 vV~-~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~---~~~vqr~---A--- 159 (1720)
|-. -..|.-|+ ++..+. ...+-.-|+..+.|++...|+ ..+-.|.+.++++.|... +.++... .
T Consensus 230 i~K~~dli~dli-~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 IDKMDDLINDLI-AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 221 12344444 333332 345666778888888876664 344566677788877421 1111111 1
Q ss_pred -------HHHH----HH-----hccCCCCch-------hH-HHh---CcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhc
Q 000286 160 -------LSTA----AN-----MCKKLPSDA-------AD-FVM---EAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAF 211 (1720)
Q Consensus 160 -------l~aL----sN-----lc~~~~~~~-------~~-~v~---~~lP~L~~LL~~~D~~-V~e~A~~aLs~L~~~~ 211 (1720)
+.+. +. +|-..++.+ .. .++ .++-.|..+|++..+. .+.-||.-+..++..
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~- 387 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA- 387 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh-
Confidence 1111 11 222111111 11 122 3677888889988766 677788889999986
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
.|+....+...|+=..+++||.|+ ++.+.-.|+.++-.+.
T Consensus 388 --~PE~~~vl~Kyg~k~~im~L~nh~---------d~~VkfeAl~a~q~~i 427 (432)
T COG5231 388 --SPEINAVLSKYGVKEIIMNLINHD---------DDDVKFEALQALQTCI 427 (432)
T ss_pred --CchHHHHHHHhhhHHHHHHHhcCC---------CchhhHHHHHHHHHHH
Confidence 899999999999999999999998 4678889998876654
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.08 E-value=3.4 Score=52.97 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=104.8
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.++..|..-+||.=|.++- .|+...|+..++.++...|..... ++..|+ .++.-+..+|+.+|+.+|..|+.+
T Consensus 368 siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLv-DMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSSPGFAVR-----ALDFLV-DMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998774 899999999999999988866554 556888 888889999999999999999976
Q ss_pred CcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-c-CCHHHHHHHHHHHHHHH
Q 000286 131 HPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-Y-HDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 131 ~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~-~-~D~~V~e~A~~aLs~L~ 208 (1720)
..++..-++.++.-|+..+..+...+--.|. +|+ ..+...+.-++..|...|. + +|. ...+.|+.+|.
T Consensus 441 ---l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~---~~d~~~i~m~v~~lL~~L~kyPqDr---d~i~~cm~~iG 510 (823)
T KOG2259|consen 441 ---LAIREEQLRQILESLEDRSVDVREALRELLK-NAR---VSDLECIDMCVAHLLKNLGKYPQDR---DEILRCMGRIG 510 (823)
T ss_pred ---heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC---CCcHHHHHHHHHHHHHHhhhCCCCc---HHHHHHHHHHh
Confidence 5677778888998888777776554443333 333 2334444444444444432 2 232 34567888888
Q ss_pred hh
Q 000286 209 EA 210 (1720)
Q Consensus 209 ~~ 210 (1720)
.+
T Consensus 511 qn 512 (823)
T KOG2259|consen 511 QN 512 (823)
T ss_pred cc
Confidence 85
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=84.93 E-value=2.4 Score=42.44 Aligned_cols=90 Identities=20% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH
Q 000286 118 EQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK 195 (1720)
Q Consensus 118 Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~ 195 (1720)
..++++|..++..-+.. -.-.-.+++++..++..+..+...|+-++.|+++.....-.....++++.|.+++...|+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 45667777776554442 2223478899999999999999999999999998666666667889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000286 196 VLEHASVCLTRIA 208 (1720)
Q Consensus 196 V~e~A~~aLs~L~ 208 (1720)
|...| ..|-++.
T Consensus 84 Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 84 VRSAA-ELLDRLL 95 (97)
T ss_pred HHHHH-HHHHHHh
Confidence 77655 5554443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.8e+02 Score=41.70 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=102.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccc---cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYG---AVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G---aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.+||+|.+.=-++ ++.+| .|.--|.|..-.. ...+|+.- +..-|+ .=+.+..=.++|.++-||.-|-+.++
T Consensus 998 kLIPrLyRY~yDP-~~~Vq-~aM~sIW~~Li~D---~k~~vd~y~neIl~eLL-~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDP-DKKVQ-DAMTSIWNALITD---SKKVVDEYLNEILDELL-VNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HhhHHHhhhccCC-cHHHH-HHHHHHHHHhccC---hHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHcCCC
Confidence 4789988886666 47888 4444444544322 22333332 223333 22334456899999999999999877
Q ss_pred chhhhcC---chhHHhhhhccCChHHHH---HHHHHHHHhccCC-----CCchhHHHhCcHHHHHHh-hccCCHHHHHHH
Q 000286 133 TACLRAG---ALMAVLSYLDFFSTGVQR---VALSTAANMCKKL-----PSDAADFVMEAVPLLTNL-LQYHDAKVLEHA 200 (1720)
Q Consensus 133 ~~Il~~G---gL~~LL~lLd~~~~~vqr---~Al~aLsNlc~~~-----~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A 200 (1720)
..-+..- ...++....|.-...+.. .++.+++.+|-.. +...-..+..++|.|..- +-+.-++|..-+
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 5322221 222333334443333333 4677777777622 333445566788888765 347778899999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
+..+..|++. .+..+...+ ..+++.|++..+.-
T Consensus 1152 i~tl~dl~Ks---sg~~lkP~~-~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1152 IGTLMDLAKS---SGKELKPHF-PKLIPLLLNAYSEL 1184 (1702)
T ss_pred HHHHHHHHHh---chhhhcchh-hHHHHHHHHHcccc
Confidence 9999999996 555444333 35777777777653
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.76 E-value=9.8 Score=47.69 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=110.6
Q ss_pred cchHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC---CCCHHHHHHHHHHHHHhh
Q 000286 11 SGRLKKILSGLRAD--GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH---ESNPDIMLLAARALTHLC 85 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~--~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~---~~~~eiq~~AaraLtNL~ 85 (1720)
..+++.++..+-+. +.+..++..-...+--+...+ .+...|++..++..|.. +.+..+.-.|||+|.|++
T Consensus 212 ~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~-----~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~a 286 (533)
T KOG2032|consen 212 DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK-----ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTA 286 (533)
T ss_pred CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc-----cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 34566666665332 123334444444443333322 24466777777777742 124567789999999999
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---cCChHHHHHHHHH
Q 000286 86 DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRVALST 162 (1720)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~Al~a 162 (1720)
++.|+.+..-.. -.+..++-.|.+-.+.+|+-+++.+|..+..--.+.-++.+-++..+++.. .....+.-.|...
T Consensus 287 s~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~L 365 (533)
T KOG2032|consen 287 SGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVL 365 (533)
T ss_pred ccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHH
Confidence 997765543221 234455556667778999999999999997654444455555555555444 4455666555554
Q ss_pred HHH---hccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 163 AAN---MCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 163 LsN---lc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..- +|.+.-..-| +.+.+-+-.|.-.|++..+.|. .||....+.|.
T Consensus 366 fg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 366 FGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 444 4443222222 1233333334444666666654 58888777775
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.5 Score=34.11 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=26.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 181 ~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
++|.|.+++++++++|...|++||..|+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999986
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.42 E-value=1.8e+02 Score=39.98 Aligned_cols=220 Identities=13% Similarity=0.073 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv 105 (1720)
--.++-.|++.+...-.+.=.+ .-....++....++|.++.+..++.+||-||.-+.......-..+- -.||.++
T Consensus 475 ~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~m 549 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIM 549 (1010)
T ss_pred hhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHH
Confidence 3467777888887666543111 1233446777788888555689999999999999987653323332 2577777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcc-----h-hhhcCchhHHhhhhcc---CChHH---HHHHHHHHHH---hccCC
Q 000286 106 ARLLTIEYMDLAEQSLQALKKISQEHPT-----A-CLRAGALMAVLSYLDF---FSTGV---QRVALSTAAN---MCKKL 170 (1720)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~-----~-Il~~GgL~~LL~lLd~---~~~~v---qr~Al~aLsN---lc~~~ 170 (1720)
++||.....-=.+--..+++.|-...+. + =+-.......++.+.. .+... +-.|+-+|.- +....
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 7887765422222223445555433322 1 1111222333344431 11111 2222222222 22222
Q ss_pred CCch--h-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCC
Q 000286 171 PSDA--A-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 171 ~~~~--~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls 247 (1720)
+... . .....++|.+..+|++.-.++.+.++-.+.+++-- .++.--.+ -|+++.+.+.+... .
T Consensus 630 e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~m--W~ll~li~e~~~~~---------~ 695 (1010)
T KOG1991|consen 630 ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIM--WGLLELILEVFQDD---------G 695 (1010)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHH--HHHHHHHHHHHhhh---------h
Confidence 1111 1 12234678888888888888888888887777763 22211111 25666677766554 2
Q ss_pred hhHHHHHHHHHHHHhcC
Q 000286 248 TPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~ 264 (1720)
..-+....-+|-|+.+.
T Consensus 696 ~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 696 IDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHhhheee
Confidence 44566666677766543
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.87 E-value=9.3 Score=49.23 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=114.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcc-c---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEES-L---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~-l---~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...++.+.. ++..++.+|++-+.-.-.+..-+. . ..-..+.+.-.+++.+++- +..+..+|+.+|+-+-.++.+
T Consensus 237 ~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 237 SRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHH
Confidence 334444443 366777777666644443331000 0 0111233556677777755 477778888888877655444
Q ss_pred chhhhcccccHHHHHH---------HHhcCC--------cHHH-HHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCC
Q 000286 91 SCAAVVHYGAVTCFVA---------RLLTIE--------YMDL-AEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFS 152 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~---------kLL~~~--------~~dl-~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~ 152 (1720)
..+.-++......|-. .|.... ..|+ .|. -......|+..|+.-+++.=|...-
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee--------~d~~~~siI~sGACGA~VhGlEDEf 386 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE--------DDEEEESIIPSGACGALVHGLEDEF 386 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh--------ccccccccccccccceeeeechHHH
Confidence 3333332221110000 111111 0111 111 1223346777777777777776666
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC------Cc
Q 000286 153 TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH------GL 226 (1720)
Q Consensus 153 ~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~------gl 226 (1720)
-++.+.|+..++.++.+.|. | ...++..|+..++.+...|...|..+|..|+....-..+++..+++. ++
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~--F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPG--F--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCC--c--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHH
Confidence 67777777777777664432 2 34467777888877777888888888777777655566666666633 34
Q ss_pred HHHHHHhhcCC
Q 000286 227 VTQAATLISTS 237 (1720)
Q Consensus 227 l~~Lv~LL~~~ 237 (1720)
=..+-+||...
T Consensus 463 Re~l~elL~~~ 473 (823)
T KOG2259|consen 463 REALRELLKNA 473 (823)
T ss_pred HHHHHHHHHhc
Confidence 45555666544
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.55 E-value=36 Score=47.08 Aligned_cols=225 Identities=14% Similarity=0.083 Sum_probs=129.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCC-cchh
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLP-SSCA 93 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p-~~~~ 93 (1720)
+....+..+..+|..+-.-|.+++.. +.. .......+..+.+.|.+. ...-.|..++-||.-|.+..+ ++++
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS---PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC---Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH
Confidence 33333333789999999888877776 111 122333344444444321 235678888999999998877 4444
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC------chhHHhhhhccC-ChHHHHH--H-HHHH
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG------ALMAVLSYLDFF-STGVQRV--A-LSTA 163 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G------gL~~LL~lLd~~-~~~vqr~--A-l~aL 163 (1720)
.+.. .||-++ -++...+...++.|..+|-.|.. ....++.| .|...+..|.-. --..++. + +-++
T Consensus 735 ~i~k--~I~EvI-L~~Ke~n~~aR~~Af~lL~~i~~--i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 735 LIPK--LIPEVI-LSLKEVNVKARRNAFALLVFIGA--IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HHHH--HHHHHH-HhcccccHHHHhhHHHHHHHHHH--HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 4443 555555 34455555555555555555542 11122222 334444444321 1111222 1 3333
Q ss_pred HHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 164 ANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 164 sNlc~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
..+.. ....-+-.....++..++..|.++.++|++.|+..+..++..| ....+.... ..+++.+..++...
T Consensus 810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--pe~~l~~~~-~~LL~sll~ls~d~----- 881 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--PEECLSPHL-EELLPSLLALSHDH----- 881 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--CHHHHhhhH-HHHHHHHHHHHHhh-----
Confidence 33333 2344455667888999999999999999999999999999874 333333322 34788888877554
Q ss_pred CCCCChhHHHHHHHHHHHHhc
Q 000286 243 QASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas 263 (1720)
...++..+-.+|--|++
T Consensus 882 ----k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 882 ----KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ----hHHHHHHHHHHHHHHHH
Confidence 45566666666665554
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.49 E-value=25 Score=48.03 Aligned_cols=137 Identities=15% Similarity=0.070 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-h----hhhcCchhHH
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-A----CLRAGALMAV 144 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~----Il~~GgL~~L 144 (1720)
+..++..|+|||.+|....|+... .+..|+|+ .-..+.+.+++.-+.-+.+.+...... . -+....+.-+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a----~~~L~~ll-d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLA----DYVLPPLL-DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhc----ccchhhhh-hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 578999999999999887765433 35678888 555667778888787777777654322 0 1122222222
Q ss_pred --------hhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 145 --------LSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 145 --------L~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
..+++..-..+.|.++.-.-..+. +...-..+.+ .+---.|...+.+.+ .+.+.|.|+++.++..|.
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~ 708 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV 708 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH
Confidence 122222111344444433333333 3332222222 223333444443333 677788888888887643
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=83.48 E-value=32 Score=42.32 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=141.2
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh-----hhccc--ccHHHHHHHHhcCCcHHHHHHHHHH
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA-----AVVHY--GAVTCFVARLLTIEYMDLAEQSLQA 123 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~-----~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~a 123 (1720)
.+...++++.|+..|..- +.|.+..++.+..|+.....+... .+..+ .++..|+ + ..+.+|++-.|-..
T Consensus 71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-~--gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-R--GYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-H--GGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-H--HhcCccccchHHHH
Confidence 455678899999999865 489999999999999976554422 33332 2333333 2 23456777777777
Q ss_pred HHHhhccCc--chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHH----HhCcHHHHHHhhccCCHHHH
Q 000286 124 LKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF----VMEAVPLLTNLLQYHDAKVL 197 (1720)
Q Consensus 124 L~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~----v~~~lP~L~~LL~~~D~~V~ 197 (1720)
|.-.++... ..|+....+-.+..++...+-++...|..++.-+........... -..++.....||.+++--+.
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 777766544 368888888889999998899999999999988666432221111 13467788999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHH----HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC---CHHHHH
Q 000286 198 EHASVCLTRIAEAFASSPDKLDE----LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG---SPLCAK 270 (1720)
Q Consensus 198 e~A~~aLs~L~~~~~~~~~~~~~----li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~---s~~~t~ 270 (1720)
.+++..|+.|.- ++.+.+. +-+..-+..++.||.+. +.+++..|..++-..++. ++.+..
T Consensus 227 rqslkLL~elll----dr~n~~vm~~yi~~~~nLkl~M~lL~d~---------sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 227 RQSLKLLGELLL----DRSNFNVMTRYISSPENLKLMMNLLRDK---------SKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHHH----SGGGHHHHHHHTT-HHHHHHHHHHTT-S----------HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred hhhHHHHHHHHH----chhHHHHHHHHHCCHHHHHHHHHHhcCc---------chhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 999999999987 3444333 33446788899999876 788999999998877654 244444
Q ss_pred HHHH
Q 000286 271 TLLH 274 (1720)
Q Consensus 271 ~Ll~ 274 (1720)
.|+.
T Consensus 294 iL~~ 297 (335)
T PF08569_consen 294 ILIK 297 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=83.38 E-value=21 Score=44.61 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHH----h--cCCCcccccccc-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 28 GKQVEALTQLCEML----S--IGTEESLSTFSV-DSFAPVLVGLLNHES--NPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL----~--~~~~~~l~~~~~-~g~Vp~LV~lL~~~~--~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
+.|...++.|-+.+ . ....+.++.+.. ..++..|..+|++.. -+.+-..|+-+++.+.-..|..-..+.++
T Consensus 71 ~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~ 150 (379)
T PF06025_consen 71 YQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA 150 (379)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence 44555555444433 3 223355567777 778999999998764 36777899999999999999888899999
Q ss_pred ccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhc
Q 000286 99 GAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLD 149 (1720)
Q Consensus 99 GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd 149 (1720)
|.++.+++.+. --+..|+.-..-.+|+-||-+... .+.+.+.+..++..+.
T Consensus 151 Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 151 GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 99999997766 124577777777888888876553 6778888888777663
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.37 E-value=85 Score=44.71 Aligned_cols=185 Identities=10% Similarity=0.149 Sum_probs=115.0
Q ss_pred cchHHHHHHHhhcCC---------CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 000286 11 SGRLKKILSGLRADG---------EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARAL 81 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~---------D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraL 81 (1720)
.++++.+++.|+..+ .+.+-......+-..|.+..+ + .-.-++++..++..|.. ....+..-|.+||
T Consensus 765 ~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~--f-~~sfD~yLk~Il~~l~e-~~ialRtkAlKcl 840 (1692)
T KOG1020|consen 765 ENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARS--F-SQSFDPYLKLILSVLGE-NAIALRTKALKCL 840 (1692)
T ss_pred HHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhH--H-HHhhHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 456666777665431 123333444444445554322 1 11235678888888884 4588999999999
Q ss_pred HHhhccCCcchh-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHH
Q 000286 82 THLCDVLPSSCA-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAL 160 (1720)
Q Consensus 82 tNL~~~~p~~~~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al 160 (1720)
.+|.++.|.... .-|+.|+...++ -+...|+|.|+..+|.----.++.+.+. -..+..-+...++.|.+.++
T Consensus 841 S~ive~Dp~vL~~~dvq~~Vh~R~~-----DssasVREAaldLvGrfvl~~~e~~~qy--Y~~i~erIlDtgvsVRKRvI 913 (1692)
T KOG1020|consen 841 SMIVEADPSVLSRPDVQEAVHGRLN-----DSSASVREAALDLVGRFVLSIPELIFQY--YDQIIERILDTGVSVRKRVI 913 (1692)
T ss_pred HHHHhcChHhhcCHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhhhccHHHHHHH--HHHHHhhcCCCchhHHHHHH
Confidence 999999885433 345555555555 4568999999999986544444433321 11223333456889999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.++.-+|.. .++|..+.++.-.+....+.++..|.+-++-+|..+=
T Consensus 914 KIlrdic~e--~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 914 KILRDICEE--TPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHh--CCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 999999974 3455555555555555555555557777777776653
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=82.40 E-value=19 Score=46.81 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=89.7
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~--~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.....+..|+...+. +.....-|.+-|.+.... || .+..+-+++.|..++ +..|+..|.+.|-.+|.
T Consensus 20 ~~~~~y~~il~~~kg--~~k~K~Laaq~I~kffk~--------FP~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck 88 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG--SPKEKRLAAQFIPKFFKH--------FPDLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCK 88 (556)
T ss_dssp GGHHHHHHHHHGGGS---HHHHHHHHHHHHHHHCC---------GGGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--
T ss_pred cCHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhh--------ChhhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHH
Confidence 344567788888875 466666677877766554 33 345789999999877 49999999999999999
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---cCChHHHHHHHHHH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRVALSTA 163 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~Al~aL 163 (1720)
.+++.+..|++ +|+ +||.+++..-...+-++|-.|-...+. +.|..+...+- ..+..+...++..|
T Consensus 89 ~~~~~v~kvaD-----vL~-QlL~tdd~~E~~~v~~sL~~ll~~d~k-----~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 89 DNPEHVSKVAD-----VLV-QLLQTDDPVELDAVKNSLMSLLKQDPK-----GTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp T--T-HHHHHH-----HHH-HHTT---HHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred hHHHHHhHHHH-----HHH-HHHhcccHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 99999888775 888 899999877777888888777766654 33344444443 34455666677666
Q ss_pred HHhcc
Q 000286 164 ANMCK 168 (1720)
Q Consensus 164 sNlc~ 168 (1720)
+.-..
T Consensus 158 ~~kl~ 162 (556)
T PF05918_consen 158 REKLK 162 (556)
T ss_dssp HHHGG
T ss_pred HHHHh
Confidence 54443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=82.35 E-value=1.2e+02 Score=36.21 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=128.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
.-|.+++..+++.|++.|..+-..-+...+...-+..++.++- ..+......++..+..+.+...... .....++..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-~~~~~i~~~ 84 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-ESAVKILRS 84 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-hhHHHHHHH
Confidence 4466789999999999999998888877777777888888774 2355556566666666664222111 122223333
Q ss_pred HHHh--hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 185 LTNL--LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 185 L~~L--L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
+..- .+.--+.....+...+-.+.+. ..+.++.+ ..+.+..+++++.... +|.....+.+++..+.
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~-~~~fv~~~i~~~~gEk--------DPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSM-GDDFVYGFIQLIDGEK--------DPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhc-hhHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHH
Confidence 3221 1122244555566666666664 33333222 2347778888776653 5555555555555443
Q ss_pred cCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCccc
Q 000286 263 SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVR 342 (1720)
Q Consensus 263 s~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~ 342 (1720)
..-+ + ..-.+++.+++ .-.+|.-.. .|
T Consensus 153 ~~~~-----------------------------~----~~~~e~lFd~~---~cYFPI~F~----pp------------- 179 (262)
T PF14500_consen 153 QEFD-----------------------------I----SEFAEDLFDVF---SCYFPITFR----PP------------- 179 (262)
T ss_pred Hhcc-----------------------------c----chhHHHHHHHh---hheeeeeee----CC-------------
Confidence 3211 0 11223333333 334442110 00
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 343 KSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
+ .... .- +.......-..++..+| .|....+|.|+|-..++ ...|+..+|..|...+..-.++.+
T Consensus 180 --~--~dp~-~I--T~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s~-~~~~K~D~L~tL~~c~~~y~~~~~ 244 (262)
T PF14500_consen 180 --P--NDPY-GI--TREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDST-SPSVKLDSLQTLKACIENYGADSL 244 (262)
T ss_pred --C--CCCC-CC--CHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHCCHHHH
Confidence 0 0000 00 00111122223334444 56788899999999887 555999999999987765555443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.04 E-value=37 Score=42.60 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=112.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhh-ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLC-DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~-~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.|..++.=+++.+..+-+..|..-|.-|+ ++.-..+..-. .-++-.+++.|-.+.+.-.++-|+..|+.|++.++...
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45555555544333444555555344443 33322222111 12444566455555778889999999999999888654
Q ss_pred hhcC--chhHHhhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 136 LRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 136 l~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
.+.- ++..+|.--..+...+-+.|.-+...... ..|... |-.++.+|...|......++.++.+|+.+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l- 437 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERL- 437 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc-
Confidence 4432 23333333345566666666555444333 223222 334444555588888888888999999974
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 213 ~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
..+.+..++ .++.|.+++--.+. +..++..|+.||-.|.
T Consensus 438 -~~EeL~~ll-~diaP~~iqay~S~---------SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 438 -SAEELLNLL-PDIAPCVIQAYDST---------SSTVRKTAVFCLVAMV 476 (516)
T ss_pred -CHHHHHHhh-hhhhhHHHHHhcCc---------hHHhhhhHHHhHHHHH
Confidence 555555555 35888888877665 6678999999888775
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.95 E-value=21 Score=47.11 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=107.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.+.|-|=.+|.+.+ ..++++||+++.++...+++.... +|..|. -++.++..-++-.|+.+|-.+|..+|.++
T Consensus 245 ~~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~p-----avs~Lq-~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELAP-----AVSVLQ-LFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hHHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcch-----HHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 35666666777654 678889999999998766654443 777777 88899999999999999999999999876
Q ss_pred hhcC-chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC
Q 000286 136 LRAG-ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS 214 (1720)
Q Consensus 136 l~~G-gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~ 214 (1720)
.-++ -|..++.-.+ -. .|.-++.-+.+-...........-++..+.=+..+-..|+.+|..+|+.+--.
T Consensus 318 ~~cN~elE~lItd~N---rs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~---- 387 (865)
T KOG1078|consen 318 TVCNLDLESLITDSN---RS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR---- 387 (865)
T ss_pred cccchhHHhhhcccc---cc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH----
Confidence 6554 3333332221 11 23333333333222222222333333333334444455666666666555432
Q ss_pred HHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH
Q 000286 215 PDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 269 (1720)
Q Consensus 215 ~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t 269 (1720)
...+.+.-|..+|.... ..+-+..++.++..++...++..
T Consensus 388 -------k~~~~m~FL~~~Lr~eG--------g~e~K~aivd~Ii~iie~~pdsK 427 (865)
T KOG1078|consen 388 -------KHTVMMNFLSNMLREEG--------GFEFKRAIVDAIIDIIEENPDSK 427 (865)
T ss_pred -------HHHHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHhCcchh
Confidence 11234556666665531 34455666666666666555543
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=81.93 E-value=67 Score=37.45 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=122.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.|+..+....++..+...+..|-.+....+ .. ..-++..|+.+...+ ..+.+..+.|.++.+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~-----~~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC-----VPPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc-----hhHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH-
Confidence 45567767666699999999999988877653 22 223466666666654 36777788999999988766432
Q ss_pred hhcccccHHHHHHHH--h--------cCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh-ccCChHHHHHHHHH
Q 000286 94 AVVHYGAVTCFVARL--L--------TIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL-DFFSTGVQRVALST 162 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kL--L--------~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL-d~~~~~vqr~Al~a 162 (1720)
+.+..++ .. + .....+..-....++.-||...++ --...+..+-.+| +.....++-.++-+
T Consensus 74 -----~~L~~~L-~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 -----PFLQPLL-LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred -----HHHHHHH-HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2333333 22 0 111233444445688888887776 1122455666677 67788899999999
Q ss_pred HHHhccCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCC
Q 000286 163 AANMCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1720)
Q Consensus 163 LsNlc~~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~ 238 (1720)
+.-+|.. +..-+....-.|..-|..+ .+.|++..|.-+..+..+ .-+.+..+. +...++..+-++..+.+
T Consensus 146 l~~Lc~~----~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~-~~~~e~~~~-~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 146 LAPLCEA----EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG-AVDSEEYEE-LKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHH----hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc-cCChhhhhH-HHHHHHHHHHhhccccc
Confidence 9999932 2122233344444444433 566776656555554444 223333333 34457777777776653
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.27 E-value=26 Score=45.72 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=88.0
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhc-cCChHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD-FFSTGVQRVAL 160 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd-~~~~~vqr~Al 160 (1720)
+++-.....-..+++ ++..|+ +++......++--|+..+..++.-... ..++.- ...++..|. ..+.++.|.|+
T Consensus 315 ~l~~h~D~e~~ll~~--~~~~Lg-~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrrav 390 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSR--AVNQLG-QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAV 390 (938)
T ss_pred HHHHHcCCcHHHHHH--HHHHHH-HHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHH
Confidence 333333333344443 677888 888888888888888888888764332 333333 778888888 77999999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
-.+.-+|... ..+.++.-|...|.+-|..+.++...=++-|++.|..
T Consensus 391 DLLY~mcD~~------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 391 DLLYAMCDVS------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 9999999642 3455677777778889999999998888888887633
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1720 | ||||
| 1c4z_A | 358 | Structure Of E6ap: Insights Into Ubiquitination Pat | 1e-26 | ||
| 3tug_A | 398 | Crystal Structure Of The Hect Domain Of Itch E3 Ubi | 3e-26 | ||
| 1nd7_A | 374 | Conformational Flexibility Underlies Ubiquitin Liga | 2e-25 | ||
| 2xbb_A | 386 | Nedd4 Hect:ub Complex Length = 386 | 8e-25 | ||
| 3jvz_C | 385 | E2~ubiquitin-Hect Length = 385 | 6e-23 | ||
| 3jw0_C | 385 | E2~ubiquitin-Hect Length = 385 | 7e-23 | ||
| 3h1d_A | 405 | Structure Of The Huwe1 Hect Domain Length = 405 | 7e-22 | ||
| 3g1n_A | 388 | Catalytic Domain Of The Human E3 Ubiquitin-Protein | 3e-21 | ||
| 2oni_A | 392 | Catalytic Domain Of The Human Nedd4-Like E3 Ligase | 1e-20 | ||
| 1zvd_A | 380 | Regulation Of Smurf2 Ubiquitin Ligase Activity By A | 2e-18 | ||
| 3olm_A | 429 | Structure And Function Of A Ubiquitin Binding Site | 3e-16 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 2e-11 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 4e-11 | ||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 2e-06 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 2e-06 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 2e-06 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 2e-06 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 2e-06 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 3e-06 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 3e-06 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 3e-06 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 4e-06 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 6e-06 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 6e-06 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 7e-06 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 7e-06 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 7e-06 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 7e-06 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 1e-05 |
| >pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 | Back alignment and structure |
|
| >pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 | Back alignment and structure |
|
| >pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 | Back alignment and structure |
|
| >pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 | Back alignment and structure |
|
| >pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
|
| >pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
|
| >pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 | Back alignment and structure |
|
| >pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 | Back alignment and structure |
|
| >pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 | Back alignment and structure |
|
| >pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 | Back alignment and structure |
|
| >pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 1e-75
Identities = 114/506 (22%), Positives = 184/506 (36%), Gaps = 130/506 (25%)
Query: 1237 SLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVG 1296
S ++ P + F+ +R+YF L++ +
Sbjct: 8 HHHSSGLEVLFQGPHM-DFDVKRKYFRQ----------ELERLDEGLRKEDM-------- 48
Query: 1297 RLERQKVRVSRNRIL-DSAAKVMEMYSSQ-KAVLEVEYFGEVGT--GLGPTLEFYTLLSR 1352
V V R+ + DS ++ + K L + + GE G G G E+Y ++SR
Sbjct: 49 -----AVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAG-GLLREWYMIISR 102
Query: 1353 DLQRVGLAMWRSNSSSE-----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPS 1407
++ A++R++ NPS + +
Sbjct: 103 EMFNPMYALFRTSPGDRVTYTINPSSHANPNH---------------------------- 134
Query: 1408 ADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDA 1467
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D
Sbjct: 135 ------------LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 1468 EFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GYPDYI 1523
F + L + ++ + L F+ G +
Sbjct: 183 HFYQ-------------GLVYLLENDVSTL-----------GYDLTFSTEVQEFGVAEVR 218
Query: 1524 -LKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHEL 1580
LKP N V N +EY+ LV + I +Q+ AF GF ++ + IFT EL
Sbjct: 219 DLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQEL 278
Query: 1581 DHLLCGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAP 1639
+ L+ G + + L + ++ H Y + S I + F + F QFVTG
Sbjct: 279 ELLISGLPTIDID--DLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTS 335
Query: 1640 RLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLP 1694
++P G A L K I R ST D LPS TC N L LP
Sbjct: 336 KVPLQGFAALEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLP 379
Query: 1695 PYSTKEIMYKKLVYAISEGQGSFDLS 1720
Y + E + L+ AI E F L+
Sbjct: 380 AYESFEKLRHMLLLAIQEASEGFGLA 405
|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 | Back alignment and structure |
|---|
Score = 250 bits (642), Expect = 7e-74
Identities = 106/475 (22%), Positives = 177/475 (37%), Gaps = 121/475 (25%)
Query: 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRIL-D 1312
F+ + YF +L++ ++++ RN I +
Sbjct: 21 EFKQKYDYFRK----------KLKKPADIPNR---------------FEMKLHRNNIFEE 55
Query: 1313 SAAKVMEMYSSQ--KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSE 1369
S ++M + KA L +E+ E G G E++ LLS+++ ++ +++
Sbjct: 56 SYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDN 115
Query: 1370 NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRV 1429
L P + G + YF +GRV
Sbjct: 116 Y---------------------------TLQINP-------NSGLCNEDHLSYFTFIGRV 141
Query: 1430 MAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESM 1489
A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+ +
Sbjct: 142 AGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWIL------------ 189
Query: 1490 TSDNCEEVVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPGDEN--VDINNLEEYISL 1542
+N +L L F + G + LKP V N EYI L
Sbjct: 190 --EN------------DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDL 235
Query: 1543 VVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALAEHIK 1601
V+ + +QM AF GF ++ I ++IF +EL+ L+CG ++ +H
Sbjct: 236 VIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVN--DWRQHSI 293
Query: 1602 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIV 1656
+ +GY P I + + +++ QFVTG R+P G A L TI
Sbjct: 294 YKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIE 353
Query: 1657 RKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAIS 1711
+ S + LP TC N L LPPY T E + +KL+ A+
Sbjct: 354 QWGSP-----------------EKLPRAHTCFNRLDLPPYETFEDLREKLLMAVE 391
|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 8e-74
Identities = 106/483 (21%), Positives = 177/483 (36%), Gaps = 125/483 (25%)
Query: 1255 FETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRIL-DS 1313
+ + L QQQ GH ++ VSR I +S
Sbjct: 4 LVQKLKILRQ----------ELSQQQPQAGH---------------CRIEVSREEIFEES 38
Query: 1314 AAKVMEMYSSQ-KAVLEVEYFGEVGT--GLGPTLEFYTLLSRDLQRVGLAMWRSNSSSE- 1369
+VM+M L +++ GE G G G E+ LLS ++ +++ +
Sbjct: 39 YRQVMKMRPKDLWKRLMIKFRGEEGLDYG-GVAREWLYLLSHEMLNPYYGLFQYSRDDIY 97
Query: 1370 ----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRL 1425
NP ++ + + YF
Sbjct: 98 TLQINPDSAVNPEH----------------------------------------LSYFHF 117
Query: 1426 LGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQH 1485
+GR+M A+ G +D F+ FYK +LG + L D+ D + L +
Sbjct: 118 VGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWI--------- 168
Query: 1486 LESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDEN--VDINNLEEYISL 1542
LE ++ V+D F C++ G LKP ++ V+ N +EY+ L
Sbjct: 169 LE----NDITGVLDHTF--------CVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRL 216
Query: 1543 VVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALAEHIK 1601
V+ GI Q A + GFN+V L+ F EL+ ++CG ++ + +
Sbjct: 217 YVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVN--DWKVNTR 274
Query: 1602 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIV 1656
T S + + + F +++ QFVTG+ R+P G L TI
Sbjct: 275 L-KHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIH 333
Query: 1657 RKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGS 1716
+ + T ++LP TC N + +PPY + E +Y+KL+ AI E G
Sbjct: 334 QIDACT----------------NNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG- 376
Query: 1717 FDL 1719
F +
Sbjct: 377 FAV 379
|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-72
Identities = 108/436 (24%), Positives = 185/436 (42%), Gaps = 103/436 (23%)
Query: 1302 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGT--GLGPTLEFYTLLSRDL 1354
+++V R+ I+D A +EM + + K L VE+ GE G G G + EF+ L+ ++
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEG-GVSKEFFQLVVEEI 65
Query: 1355 QRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGG 1414
+ M+ + S++ + P +
Sbjct: 66 FNPDIGMFTYDESTKL----------------------------FWFNPSSFETE----- 92
Query: 1415 QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQ 1474
F L+G V+ A+ + +LD+ F Y+ ++G + D+ + L+
Sbjct: 93 ------GQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLK 146
Query: 1475 ELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-------LKPG 1527
+L L + G +D+ + F + D LK
Sbjct: 147 DL-----------------------LEYEGNVEDDMMITFQI-SQTDLFGNPMMYDLKEN 182
Query: 1528 DEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLL 1584
+ + N +E+++L D + + +Q +AFR GF+ V + + L+ +F P E++ L+
Sbjct: 183 GDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLI 242
Query: 1585 CGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP 1643
CG R L ++ AL E ++D GYT S I EI+ FT +Q+R F QF TG R P
Sbjct: 243 CGSRNLDFQ--ALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPV 300
Query: 1644 GGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMY 1703
GGL L K+ I + T + LP+ TC N L LP YS+KE +
Sbjct: 301 GGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLK 342
Query: 1704 KKLVYAISEGQGSFDL 1719
++L+ AI+ +G F +
Sbjct: 343 ERLLKAITYAKG-FGM 357
|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 5e-71
Identities = 116/482 (24%), Positives = 174/482 (36%), Gaps = 131/482 (27%)
Query: 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRIL-D 1312
F + +F L Q H K+ VSR + D
Sbjct: 3 GFRWKLAHFRY-----------LCQSNALPSH---------------VKINVSRQTLFED 36
Query: 1313 SAAKVMEMYSSQ-KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSE- 1369
S ++M + + L V + GE G G E++ LLS ++ ++ +
Sbjct: 37 SFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNY 96
Query: 1370 ----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRL 1425
NP+ I+ D + YF
Sbjct: 97 CLQINPASTINPDH----------------------------------------LSYFCF 116
Query: 1426 LGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQH 1485
+GR +A AL G+ +D FS FYK +L +L + D+ D EF L +
Sbjct: 117 IGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWI--------- 167
Query: 1486 LESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPGDEN--VDINNLEE 1538
++ N EE L + F++ G LK G N V N +E
Sbjct: 168 RDN----NIEEC-----------GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDE 212
Query: 1539 YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALA 1597
YI L+ + G+ Q +AF GFN+V + LQ F EL+ +LCG +E+
Sbjct: 213 YIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLA--DWQ 270
Query: 1598 EHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL-----NPK 1652
+ + YT S I+ + + E + + QFVTG RLP GG A L K
Sbjct: 271 RNTVY-RHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQK 329
Query: 1653 LTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 1712
I + D LP TC N L LPPY + E + +KL++AI E
Sbjct: 330 FCIEKVGK-----------------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE 372
Query: 1713 GQ 1714
+
Sbjct: 373 TE 374
|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-69
Identities = 102/479 (21%), Positives = 163/479 (34%), Gaps = 124/479 (25%)
Query: 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRIL-D 1312
F + YF Q G ++V R I D
Sbjct: 54 DFRRKVIYFR-------------SQPALRILPGQC-------------HIKVRRKNIFED 87
Query: 1313 SAAKVMEMYSSQ-KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSE- 1369
+ ++M K L +++ GE G G + EF+ LLS ++ ++ ++
Sbjct: 88 AYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNY 147
Query: 1370 ----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRL 1425
NP+ I+ + + YF+
Sbjct: 148 TIQINPNSGINPEH----------------------------------------LNYFKF 167
Query: 1426 LGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQH 1485
+GRV+ + R LD F A YK++L ++ L D+ DAE
Sbjct: 168 IGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYN-------------S 214
Query: 1486 LESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDEN--VDINNLEEYISL 1542
L M ++ + V+DL F D G + LKP N V N +EY+ L
Sbjct: 215 LNWMLENSIDGVLDLTF--------SADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVEL 266
Query: 1543 VVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALAEHIK 1601
+ + Q +AF GFN++ + +F EL+ L+ G E+ E +H
Sbjct: 267 YTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIE--DWKKHTD 324
Query: 1602 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIV 1656
+ GY I + + E+ +Q+ QF TG R+P G L + TI
Sbjct: 325 Y-RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIE 383
Query: 1657 RKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1715
+ LP TC N + LP Y + M +KL A+ E G
Sbjct: 384 KAGEV-----------------QQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 425
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-50
Identities = 79/469 (16%), Positives = 166/469 (35%), Gaps = 59/469 (12%)
Query: 4 SASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG 63
S L ++ L +D + +Q+ A + ++LS + P LV
Sbjct: 79 QQFYSQLQQELPQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 137
Query: 64 LLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQA 123
+ + L AA ALT++ + VV AV F+ +LL +++ EQ++ A
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWA 196
Query: 124 LKKI---SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVM 179
L + S ++ L+ A+ +L + + R A T +N+C+ K P V
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 180 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239
+A+P L L+ D + L A ++ +++ + + + + + + L+S
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSD---GPQEAIQAVIDVRIPKRLVELLS---- 309
Query: 240 GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG------------ 287
ST T +R + +G+ L + +++ G+ L+ +LS
Sbjct: 310 -----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364
Query: 288 -SGVSANS-----------AVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMF 335
S ++A + +PP + ++ A + G + P
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424
Query: 336 VKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVL-------- 387
V ++ + + A E +L + G+++
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVT--LDALENILKMGEADKEARGLNINENADFIEKAGG 482
Query: 388 ---IQIYGSSVNSPVRHKCLSVIGKLMYFSSAE--MIQSLLSVTNISSF 431
I + N + K +I YF E + +++ ++F
Sbjct: 483 MEKIFNCQQNENDKIYEKAYKIIET--YFGEEEDAVDETMAPQNAGNTF 529
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-45
Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 14/237 (5%)
Query: 5 ASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGL 64
S + + R ++ L + +E ++ A L E+L + L ++ V +
Sbjct: 25 VSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMVLERHLDVFINA 83
Query: 65 LNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV----ARLLTIEYMDLAEQ- 119
L+ E N + + A RAL +L +P + + ++ IE +D+ +
Sbjct: 84 LSQE-NEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL 142
Query: 120 -----SLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174
S I++ + L L +L+ ++ L+ + L +
Sbjct: 143 QPLEDSKLVRTYINELVVSPDLYTKVAGFCL-FLNMLNSSADSGHLTLILDEIPSLLQND 201
Query: 175 ADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQA 230
+F++E A+ +L L + + ++ + ++RI + V+
Sbjct: 202 NEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDL 258
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-38
Identities = 73/403 (18%), Positives = 162/403 (40%), Gaps = 36/403 (8%)
Query: 4 SASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG 63
++ + ++ I+ G+ ++ E Q++A ++LS + + P V
Sbjct: 49 GSNQGTVNWSVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 107
Query: 64 LLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQA 123
L I +A ALT++ AVV GA+ F+ LL + ++EQ++ A
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWA 166
Query: 124 LKKISQEHPT---ACLRAGALMAVLSYL-----DFFSTGVQRVALSTAANMCK-KLPSDA 174
L I+ + ++ GA+ +L+ L + G R T +N+C+ K P+
Sbjct: 167 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 226
Query: 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
D V + +P L LL ++D +VL + ++ + + ++++ + G+V Q L+
Sbjct: 227 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD---GPNERIEMVVKKGVVPQLVKLL 283
Query: 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS--- 291
+ P T +R + +G+ + ++ G + +L+ +
Sbjct: 284 GATE---------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334
Query: 292 -ANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP---VVRKSPAS 347
A + + +QI ++VN + L+P + + S ++ + + +
Sbjct: 335 EATWTMSNITAGRQDQIQQVVN--HGLVPF----LVGVLSKADFKTQKEAAWAITNYTSG 388
Query: 348 SSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQI 390
+ +Q + + LLS + + Q +D + + Q
Sbjct: 389 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 30/211 (14%), Positives = 76/211 (36%), Gaps = 15/211 (7%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES 69
+ G + +++ L E AL + +++ GT+E V LL +
Sbjct: 272 KKGVVPQLVKLLG-ATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTN-P 328
Query: 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI-- 127
+I A ++++ VV++G V V +L+ +++ A+
Sbjct: 329 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITNYTS 387
Query: 128 --SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA-----ADFVME 180
+ E + G + +++ L T + +V L +N+ + + + E
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447
Query: 181 A--VPLLTNLLQYHDAKVLEHASVCLTRIAE 209
+ + L ++ + V + + + +
Sbjct: 448 CGGLDKIEALQRHENESVYKASLNLIEKYFS 478
|
| >3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-27
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 1596 LAEHIKFDHGYTAKSPAIVNLL----EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP 1651
L F+ + ++ I+ + + +++ F T +P LP P
Sbjct: 9 LISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEG-FQP 67
Query: 1652 KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAIS 1711
+I + D LP+ TC + L +P YS+K+I+ +KL+ AI
Sbjct: 68 MPSITIRPPD----------------DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK 111
Query: 1712 EGQGSF 1717
F
Sbjct: 112 TKNFGF 117
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 1e-20
Identities = 53/285 (18%), Positives = 106/285 (37%), Gaps = 20/285 (7%)
Query: 8 SHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFA-PVLVGLLN 66
+ ++ + +Q+ A + ++LS + V L
Sbjct: 16 APGGVITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74
Query: 67 HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKK 126
+ N + +A LT++ V+ GAV F+ LL+ E+ D+ EQ++ AL
Sbjct: 75 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI-ELLSSEFEDVQEQAVWALGN 133
Query: 127 ISQEHP---TACLRAGALMAVLSYL-DFFSTGVQRVALSTAANMCK-KLPSDAADFVMEA 181
I+ + L L +L + R A+ +N+C+ K P V
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 182 VPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241
+ +L+ LL D VL A L+ +++ DK+ + + G+ + L+ ++
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSD---GPNDKIQAVIDAGVCRRLVELLMHNDYKV 250
Query: 242 GQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
+L R + +G + + +L+ L +LS
Sbjct: 251 VSPAL---------RAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 20/207 (9%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES 69
+G ++++ L + AL + +++ G + S L+ LL+
Sbjct: 232 DAGVCRRLVELLM-HNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSS-P 288
Query: 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI-- 127
I A ++++ + V+ + +L +++ A+
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALI-SILQTAEFRTRKEAAWAITNATS 347
Query: 128 --SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA----------A 175
S E + G + + L + + +VAL+ N+ + +A
Sbjct: 348 GGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407
Query: 176 DFVMEA--VPLLTNLLQYHDAKVLEHA 200
+ EA + + L + + ++ + A
Sbjct: 408 ALIEEAYGLDKIEFLQSHENQEIYQKA 434
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 7e-20
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 1 MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFA-P 59
M GS H L ++ L +D + +Q+ A + ++LS E + +D+ A P
Sbjct: 1 MRGSHHHHHHGSELPQMTQQLNSDDMQ-EQLSATRKFSQILS-DGNEQIQAV-IDAGALP 57
Query: 60 VLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQ 119
LV LL+ N I+ A AL+++ AV+ GA+ V +LL+ + ++
Sbjct: 58 ALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQILQE 115
Query: 120 SLQALKKI---SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176
+L AL I E A + AGAL A++ L + + + AL +N+ ++
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQ 174
Query: 177 FVMEA--VPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
V++A +P L LL + ++L+ A L+ IA + ++ + G + + L
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQKQAVKEAGALEKLEQLQ 231
Query: 235 STSN 238
S N
Sbjct: 232 SHEN 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 11/185 (5%)
Query: 30 QVEALTQLCEMLSIGTEESLSTFSVDSFA-PVLVGLLNHESNPDIMLLAARALTHLCDVL 88
EAL L ++ G E +D+ A P LV LL+ N I+ A AL+++
Sbjct: 71 LQEALWALSN-IASGGNE-QIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGG 127
Query: 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS---QEHPTACLRAGALMAVL 145
AV+ GA+ V +LL+ + +++L AL I+ E A + AGAL A++
Sbjct: 128 NEQIQAVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 146 SYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEA--VPLLTNLLQYHDAKVLEHASVC 203
L + + + AL +N+ ++ V EA + L L + + K+ + A
Sbjct: 187 QLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245
Query: 204 LTRIA 208
L ++
Sbjct: 246 LEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P LV LL+ N I+ A AL+++ AV+ GA+ V +LL+ + +
Sbjct: 141 PALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQILQ 198
Query: 119 QSLQALKKISQEHP---TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168
++L AL I+ A AGAL + + +Q+ A +
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 21/190 (11%)
Query: 138 AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEA--VPLLTNLLQYHDAK 195
L + L+ Q A + + ++ V++A +P L LL + +
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 196 VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 255
+L+ A L+ IA + +++ + + G + L+S+ N Q +L
Sbjct: 70 ILQEALWALSNIA---SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA------- 119
Query: 256 RLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS----ANSAVPPALSRPAEQIFEIV 311
LS ASG + ++ G L +LS A A+ S EQI ++
Sbjct: 120 --LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177
Query: 312 NLANELLPPL 321
+ LP L
Sbjct: 178 D--AGALPAL 185
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 3e-15
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 12/208 (5%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P L LLN E + ++ AA + L S A + V+ V + ++ A
Sbjct: 17 PELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 119 QSLQALKKISQ--EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176
+ L +S E A ++G + A++ L V A++T N+
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 177 FVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235
+ + + LL + K L + CL +A + + + G ++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMR 192
Query: 236 TSNSGGGQASLSTPTYTGLIRLLSTCAS 263
T + + ++++LS C+S
Sbjct: 193 TYTYEKLLWTT-----SRVLKVLSVCSS 215
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 8e-11
Identities = 59/395 (14%), Positives = 112/395 (28%), Gaps = 29/395 (7%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
LV ++ + ++ +R L L V S+ A+V G + LT L +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQ 242
Query: 119 QSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV 178
L L+ +S G L ++ L V A +N+ +
Sbjct: 243 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302
Query: 179 -MEAVPLLTNLLQYHD--AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235
+ + L + + E A L + + + + H + L+
Sbjct: 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 362
Query: 236 TSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS---- 291
+ + GLIR L + P L G L +L +
Sbjct: 363 PPSHWPLIKAT-----VGLIRNL----ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGK 351
+ ++ EIV L + + +
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGAL----HILARDVHNRIVIRGLNTIPLFVQLLYSP 469
Query: 352 QDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 410
++ A+ V L+ E + L ++ S N V +V+ ++
Sbjct: 470 IENIQRVAAGVLCE---LAQDKEAAEAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRM 525
Query: 411 MYFSSAEMIQSLLSVTNISSFL-AGVLAWKDPHVL 444
+ + LSV SS +AW + L
Sbjct: 526 SE-DKPQDYKKRLSVELTSSLFRTEPMAWNETADL 559
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 30/216 (13%)
Query: 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDS--FAPVLVGLLNHESNPDIMLLAA 78
LRA E A+ L + S E ++ +V PV+V LL+ S+ ++ A
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-WPLIKAT 373
Query: 79 RALTHLCDVLPSSCAAVVHYGAVTCFV---------------------ARLLTIEYMDLA 117
L + P++ A + GA+ V + + ++
Sbjct: 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433
Query: 118 EQSLQALKKIS--QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA 175
E AL ++ + + + L +QRVA + + +AA
Sbjct: 434 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAA 491
Query: 176 DFVME--AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209
+ + A LT LL + V +A+ L R++E
Sbjct: 492 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 9/194 (4%)
Query: 33 ALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92
A+ +L ++L +++ S + +I+ AL L +
Sbjct: 395 AIPRLVQLLVRAHQDTQR---RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNR 450
Query: 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ--EHPTACLRAGALMAVLSYLDF 150
+ + FV +LL ++ + L +++Q E A GA + L
Sbjct: 451 IVIRGLNTIPLFV-QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 509
Query: 151 FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210
+ GV A + M + P D + +V L ++L + E A + L A+
Sbjct: 510 RNEGVATYAAAVLFRMSEDKPQDYKKRL--SVELTSSLFRTEPMAWNETADLGLDIGAQG 567
Query: 211 FASSPDKLDELCNH 224
+ D
Sbjct: 568 EPLGYRQDDPSYRS 581
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-14
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 12/208 (5%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P L LLN E + ++ AA + L S A + V+ V + ++ A
Sbjct: 20 PELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 119 QSLQALKKISQ--EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176
+ L +S E A ++G + A++ L V A++T N+
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 177 FVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235
+ + + LL + K L + CL +A + + + G ++
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMR 195
Query: 236 TSNSGGGQASLSTPTYTGLIRLLSTCAS 263
T + + ++++LS C+S
Sbjct: 196 TYTYEKLLWTT-----SRVLKVLSVCSS 218
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 20/282 (7%)
Query: 10 QSGRLKKILSGLRADGEEGKQ--VEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH 67
+G L+K+++ L + + L L G +ES LV ++
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQESKLIILASGGPQALVNIMRT 196
Query: 68 ESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127
+ ++ +R L L V S+ A+V G + LT L + L L+ +
Sbjct: 197 YTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNL 254
Query: 128 SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV-MEAVPLLT 186
S G L ++ L V A +N+ + + + L
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Query: 187 NLLQYH--DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
+ + E A L + + + + H + L+ +
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
+ GLIR L + P L G L +L
Sbjct: 375 AT-----VGLIRNL----ALCPANHAPLREQGAIPRLVQLLV 407
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 32/216 (14%)
Query: 21 LRADGEEGKQVEALTQLCEMLSIGTE-ESLSTFSVDSFA-PVLVGLLNHESNPDIMLLAA 78
LRA E A+ L + S E E + PV+V LL+ S+ ++ A
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-WPLIKAT 376
Query: 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS---------- 128
L + P++ A + GA+ V LL + D ++ +
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 129 QEHPTACLR--------------AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174
E T L + + L +QRVA + + +A
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEA 493
Query: 175 ADFVME--AVPLLTNLLQYHDAKVLEHASVCLTRIA 208
A+ + A LT LL + V +A+ L R++
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 8e-14
Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 14/209 (6%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P L LLN E + ++ AA + L S A + V+ V + ++ A
Sbjct: 153 PELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 119 QSLQALKKISQ--EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176
+ L +S E A ++G + A+++ L V A++T N+ A
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH-QEGAKM 270
Query: 177 FVME--AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
V + + LL + K L + CL +A + + + G ++
Sbjct: 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIM 327
Query: 235 STSNSGGGQASLSTPTYTGLIRLLSTCAS 263
T + + ++++LS C+S
Sbjct: 328 RTYTYEKLLWTT-----SRVLKVLSVCSS 351
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 5e-10
Identities = 38/231 (16%), Positives = 69/231 (29%), Gaps = 14/231 (6%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
LV ++ + ++ +R L L V S+ A+V G + LT L +
Sbjct: 321 QALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQ 378
Query: 119 QSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV 178
L L+ +S G L ++ L V A +N+ +
Sbjct: 379 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438
Query: 179 -MEAVPLLTNLLQYH--DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235
+ + L + + E A L + + + + H + L+
Sbjct: 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH 498
Query: 236 TSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
+ + GLIR L + P L G L +L
Sbjct: 499 PPSHWPLIKAT-----VGLIRNL----ALCPANHAPLREQGAIPRLVQLLV 540
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 5e-08
Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 13/215 (6%)
Query: 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIML 75
+ L D + L L + T++ ++ LV LL + +++
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGS-DDINVVT 417
Query: 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHP-- 132
AA L++L + V G + V +L + D+ E ++ AL+ ++ H
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477
Query: 133 ----TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME-AVPLLTN 187
A L V+ L S A P++ A + A+P L
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 537
Query: 188 LLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222
LL S+ T+ +++ E C
Sbjct: 538 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 30/216 (13%)
Query: 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFA--PVLVGLLNHESNPDIMLLAA 78
LRA E A+ L + S + ++ +V PV+V LL+ S ++ A
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKAT 509
Query: 79 RALTHLCDVLPSSCAAVVHYGAVTCFV---------------------ARLLTIEYMDLA 117
L + P++ A + GA+ V + + ++
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 118 EQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA 175
E AL ++++ + + L +QRVA + + +AA
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAA 627
Query: 176 DFVME--AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209
+ + A LT LL + V +A+ L R++E
Sbjct: 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 9/186 (4%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P +V LN + + A R L+ + AV+ GA+ V +LL+ + +
Sbjct: 15 PQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV-QLLSSPNEQILQ 72
Query: 119 QSLQALKKIS---QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA 175
++L AL I+ E A + AGAL A++ L + + + AL +N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 176 DFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
+ A+P L LL + ++L+ A L+ IA ++ + G + + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQ 189
Query: 235 STSNSG 240
S N
Sbjct: 190 SHENEK 195
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 1e-12
Identities = 51/267 (19%), Positives = 87/267 (32%), Gaps = 31/267 (11%)
Query: 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVH-YGAVTCFVARLLTIEYMDL 116
P G ++ A L LC+ AA + V R L L
Sbjct: 41 MPPTAGEAEQAADQQEREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEAGAAGL 98
Query: 117 AEQSLQALKKISQEHP---TACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPS 172
++ Q + SQ L GAL +L LD V+ AL + + ++ +
Sbjct: 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 173 DAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA 231
F+ +L +Q K+ ++ L + P+ LC+ G+V Q
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL---VGHPEHKGTLCSMGMVQQLV 215
Query: 232 TLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291
L+ T +S L L++ G C + LG+ +L+
Sbjct: 216 ALVRTEHS-----PFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQ----- 263
Query: 292 ANSAVPPALSRPAEQIFEIVNLANELL 318
L + E+ E + +LL
Sbjct: 264 --------LLQQHEEYQEELEFCEKLL 282
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 27/208 (12%), Positives = 62/208 (29%), Gaps = 6/208 (2%)
Query: 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESN 70
S + ++ ++ AL L L + + + ++ L
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELL-ADLCENMDNAADFCQLSGMHLLVGRYLEAG-A 95
Query: 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130
+ AA+ + + + V+ GA+ + L + ++L A+ + +E
Sbjct: 96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155
Query: 131 HP---TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV-MEAVPLLT 186
LR ++ + ++ + N+ P M V L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215
Query: 187 NLLQYHDAKVLEHASVCLTRIAEAFASS 214
L++ + EH L + F
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQG 243
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 32/252 (12%)
Query: 59 PVLVGLL----------NHESNPDIMLLAARALTHLCDVLPSSCAAVVHY-GAVTCFVAR 107
+ LL N + + A ALT+L ++ A + G + V
Sbjct: 76 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV-A 134
Query: 108 LLTIEYMDLAEQSLQALKKISQEHPTAC----LRAGALMA-VLSYLDFFSTGVQRVALST 162
L E DL + L+ +S G++ A + L+ + LS
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 163 AANMCKKLPSDAADFVME--AVPLLTNLLQY----HDAKVLEHASVCLTRIAEAFASSPD 216
N+ + AD A+ L L Y + ++E L ++ A++ D
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254
Query: 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276
L + + + + + + T L ++ +P + L +G
Sbjct: 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGT---------LWNLSARNPKDQEALWDMG 305
Query: 277 ISGILKDILSGS 288
+LK+++
Sbjct: 306 AVSMLKNLIHSK 317
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE----YM 114
L+ + AL +L + A + F+ LT +
Sbjct: 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232
Query: 115 DLAEQSLQALKKIS------QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168
+ E L+ +S ++H L +L +L S + A T N+
Sbjct: 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292
Query: 169 KLPSDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209
+ P D AV +L NL+ + ++ L +
Sbjct: 293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH-- 67
+ G +K ++ +E L+ L + + TE +VD LVG L +
Sbjct: 168 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227
Query: 68 -ESNPDIMLLAARALTHLCDVL---PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQA 123
+ I+ L ++ ++ + + + L + + +
Sbjct: 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGT 286
Query: 124 LKKISQEHP---TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173
L +S +P A GA+ + + + + + + N+ P+
Sbjct: 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 4e-10
Identities = 32/242 (13%), Positives = 67/242 (27%), Gaps = 11/242 (4%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFA-PVLVGLLNHE 68
Q G +K +L E+GK+ A L + E + L+ LL +
Sbjct: 534 QEGGVKALLRMALEGTEKGKR-HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD 592
Query: 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
+ ALT+L + S ++ V+ L+ L + Q L +
Sbjct: 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY-LTRAAAQCLCNLV 651
Query: 129 QEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEA--VP 183
+ + + A + + A +
Sbjct: 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711
Query: 184 LLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243
+L L+ V V + + + + +L ++ + L + +
Sbjct: 712 ILHTLIANPSPAVQHRGIVIILNMI---NAGEEIAKKLFETDIMELLSGLGQLPDDTRAK 768
Query: 244 AS 245
A
Sbjct: 769 AR 770
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-05
Identities = 45/349 (12%), Positives = 92/349 (26%), Gaps = 58/349 (16%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ L D + + A L L++ E + L+ L N
Sbjct: 382 CRRFLIKPGKDKDI--RRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLARGG-NQSC 437
Query: 74 MLLAARALTHLC--------------------------------DVLPSSCAAVVHYGAV 101
+ +LC D + + + G
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497
Query: 102 TCFVARLLTIEYMDLAEQSLQALKKIS--QEHPTACLRAGALMAVLSYLDFFSTGVQRVA 159
T A L E + E + L + +E ++ G + A+L + +R A
Sbjct: 498 TALCA-LAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHA 556
Query: 160 LSTAANMC----KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP 215
A + ++ + PLL L Q A + + LT +A + +
Sbjct: 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA---SMNE 613
Query: 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL 275
+ V++ + + +A+ + L + +
Sbjct: 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA---------QCLCNLVMSEDVIKMFEGNN 664
Query: 276 GISGILKDILSGSGVSANSAVPPALSRPA---EQIFEIVNLANELLPPL 321
L + +A AL+ + E + L L
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-04
Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 11/258 (4%)
Query: 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130
+A+ L + + + A + ++ L M+ + A+ +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277
Query: 131 HPTAC----LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLT 186
R G L +L+ QRVA K A + V +L
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK-AKALCEQGVDILK 336
Query: 187 NLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246
L + + A V L ++ ++ + + + A G +
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLG-SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDI 395
Query: 247 STPTYTGLIRLLSTCASGSPLCA-----KTLLHLGISGILKDILSGSGVSANSAVPPALS 301
GL L L L+ L G + N
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 302 RPAEQIFEIVNLANELLP 319
++ E+ A + +P
Sbjct: 456 EMLPEMIELAKFAKQHIP 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 5e-10
Identities = 103/758 (13%), Positives = 200/758 (26%), Gaps = 253/758 (33%)
Query: 888 LDKD-AQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDED--------DDHEDVL 938
+D + + + D I V D +++ D D +D ++ + ++
Sbjct: 7 MDFETGEHQYQYKD---------ILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 939 KDDS-------LPLCLSDK---VHDVKLGDS-AEDSTTVPSASDSQNNPASGSSSRGATG 987
L L K + + + + + S ++ S +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 988 RG---SDSADFRGGNSYGSRGAMSFAA-AAMAGLGSANGRGVRGGRDRHGRPLFGSSNEP 1043
R +D+ F N SR A+ L A + G + GS
Sbjct: 116 RDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLI------DG--VLGS---- 161
Query: 1044 PKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQR 1103
GK + + + L + F W + +
Sbjct: 162 --------GKTW---VAL------DVCLSYKVQCKMDFKIF--------W-----LNLKN 191
Query: 1104 ADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTY 1163
+S + + S SD +S + L +Q EL L KS P Y
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNW------TSRSDHSSNIKLRIHSIQAELR-RLLKSKP-Y 243
Query: 1164 TILALL--------RVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFI 1215
LL + N L + + + D LS +
Sbjct: 244 EN-CLLVLLNVQNAKAWNAFN-----LSCKILLTT---RFKQVTDFLSAATTTHISLDHH 294
Query: 1216 NSKLTPKLARQIQDALALCSG----SLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSR 1271
+ LTP + + L LP ++ P +
Sbjct: 295 SMTLTPDEVKSL---LLKYLDCRPQDLPR---EVLTTNPR--------------RLSIIA 334
Query: 1272 ALYRLQQQQGADGHGSVNEREIRVGRLER-QKVRVSR-NRILDSAAKVMEMYSSQKAVLE 1329
R DG + + + V + I++S+ V+E +K
Sbjct: 335 ESIR-------DG----------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 1330 VEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKS-----GK 1384
+ F + PT LLS +W + + + ++ S K
Sbjct: 378 LSVFPP-SAHI-PT----ILLSL--------IW-FDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1385 TSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPF 1444
S IS + + Y L ++ + ++D
Sbjct: 423 ESTIS---IP---SI----------------------YLELKVKLENEYALHRSIVD--- 451
Query: 1445 STAFYKLVLGHELDLHDIIPFDAEFGKILQEL-HVIVCRKQHLESMTSDNCEEV------ 1497
Y + D D+IP + H HL+++ ++ E +
Sbjct: 452 ---HYNIPKTF--DSDDLIP-PYLDQYFYSHIGH-------HLKNI--EHPERMTLFRMV 496
Query: 1498 -VDLRFRGAPIE-------------DLCLDFTLPGYPDYILKPGDENVDINNLEEYISLV 1543
+D RF I + Y YI + E ++ +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYICD------NDPKYERLVNAI 548
Query: 1544 VDATVKTGIMRQMEA--FRAGFNQVFDITSLQIFTPHE 1579
+D + ++E + + D+ + + E
Sbjct: 549 LD------FLPKIEENLICSKYT---DLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 4e-06
Identities = 91/649 (14%), Positives = 179/649 (27%), Gaps = 201/649 (30%)
Query: 1155 DLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISS--LDELSGTGVRVP-- 1210
D E Y +L V E + + V D + +S +D + + V
Sbjct: 8 DFETGEHQYQYKDILSVFE--DAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGT 64
Query: 1211 --------------YEEFINSKLTPK---LARQIQDALALCSGSLPSWCYQLTKAC--PF 1251
++F+ L L I+ S + Q +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 1252 LFP--FETRRQYFYSTAFGLSRALYRLQQQQGADGHG------SV--NE--REIRVGRLE 1299
+F +R Q + L +AL L+ + G + + +V
Sbjct: 125 VFAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1300 RQKV---RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEF--------YT 1348
K+ + +S V+EM ++ + L
Sbjct: 181 DFKIFWLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1349 LLSRDLQRVGLAM---WRSNS------------SSENPSMEIDGDEGKSGKTSNISGDLV 1393
L S+ + L + + + ++ + D + T++IS L
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---DFLSAATTTHIS--LD 292
Query: 1394 HAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVL 1453
H + L P D + LL K L D R DLP
Sbjct: 293 HHSMTLTP-------DEVKS-----------LL----LKYL-DCRPQDLP---------- 319
Query: 1454 GHELDLHDIIPFD-AEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCL 1512
E + P + + +++ + + + + D ++ + L
Sbjct: 320 -RE--VLTTNPRRLSIIAESIRDG---LATWDNWKHVNCDKLTTII----------ESSL 363
Query: 1513 DFTLPG-----YPDYILKPGDENVDI---------NNLEEY-ISLVVDATVKTG-IMRQM 1556
+ P + + P + I ++ + + +VV+ K + +Q
Sbjct: 364 NVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 1557 EAFRAGFNQVFDITSLQI---FTPHE--LDHLLCGRR-ELWEPAALAE------HIKFDH 1604
+ ++ +++ + H +DH + + + HI
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---- 477
Query: 1605 GYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAP 1664
G+ K+ + E M F F F L K+ +H STA
Sbjct: 478 GHHLKN---IEHPERMTLFR----MVFLDF------------RFLEQKI----RHDSTAW 514
Query: 1665 NTASNGTGPSESADD--DLPSVMTCANYLKLPPYSTK-EIMYKKLVYAI 1710
N + L Y Y + Y++LV AI
Sbjct: 515 N------ASGSILNTLQQL------KFYKP---YICDNDPKYERLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-05
Identities = 61/396 (15%), Positives = 111/396 (28%), Gaps = 100/396 (25%)
Query: 1038 GSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDER----FGGSDFISSDGSRLW 1093
+ KL +L R L LVL ++ + F + +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NL----SCK-- 267
Query: 1094 NDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQ---G 1150
I T R D +SA ++ + S + + SLL L
Sbjct: 268 --ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQ 316
Query: 1151 ELPCDLEKSNPTY--TILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVR 1208
+LP ++ +NP I +R +GL + CD SSL+ L R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR--DGLATWD-NWK-HVNCDKLTTIIESSLNVLEPAEYR 372
Query: 1209 VPYEEF-I---NSKLTPKL------------ARQIQDALA---LCSG-------SLPSW- 1241
++ + ++ + L + + L L S+PS
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 1242 -------------------CYQLTKA-CPFLFPFETRRQYFYSTAFGLSRALYRLQQQQG 1281
Y + K QYFYS + L ++ +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--H-IGHHLKNIEHPER 489
Query: 1282 ADGHGSV--N----EREIRVGRLERQKVRVSRNRILDSAAKVMEMYSS----QKAVLEVE 1331
V + E++IR N + ++ Y E
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYE-R 543
Query: 1332 YFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSS 1367
+ L P +E + S+ + +A+ + +
Sbjct: 544 LVNAILDFL-PKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-04
Identities = 82/579 (14%), Positives = 148/579 (25%), Gaps = 179/579 (30%)
Query: 678 QQALKRFKSFIAVALPN---SLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTG 734
+ + +K ++V + D DV M ++ LS E + H S
Sbjct: 13 EHQYQ-YKDILSVFEDAFVDNFDCKDVQDM------PKSILSKEE-----IDHIIMSK-- 58
Query: 735 SARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVV--LIDPLASLAAVEEFLWPRVQRN 792
A+S +L L +V ++ L +FL + +
Sbjct: 59 --------DAVSGTLRLFWT-------LLSKQEEMVQKFVE--EVLRINYKFLMSPI-KT 100
Query: 793 ESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKK-EPSQ 851
E Q PS + A + SR + + + + + P++
Sbjct: 101 EQRQ-PSMMTRMYIE--------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 852 EKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQAN-------GDSSSE 904
G GK + A L Q K + +S
Sbjct: 152 NVLIDGVLGSGKTWV--------------AL--DVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 905 DEELDISP---VEIDDALVIEDDDISDDEDDDHE------DVLKDDSLPLCLS--DKVHD 953
+ L++ +ID D S+ + H +LK CL V +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 954 VKLGDSAED--STTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSR----GAM 1007
K + A + + T R DF + +M
Sbjct: 256 AKAWN-AFNLSCKIL------------------LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 1008 SFAAAAMAGLGSANGRGVRGGRDRH----GRPL----FGSS--NEPPKLIF--TVGGKQL 1055
+ + L R P S + V +L
Sbjct: 297 TLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 1056 NRHLTIYQAIQRQL-VLDEDED-ERFGGSDF--------ISSDG-SRLWNDIYTITYQRA 1104
I+ L VL+ E + F I + S +W D +
Sbjct: 356 TT------IIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFD---VIKSDV 404
Query: 1105 DSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYT 1164
+++ + SL++ ++S T +
Sbjct: 405 MVVVNKL---------------------------HKYSLVE--------KQPKES--TIS 427
Query: 1165 ILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1203
I ++ L+ + L V D Y K D+L
Sbjct: 428 IPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLI 465
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 9e-10
Identities = 49/344 (14%), Positives = 100/344 (29%), Gaps = 32/344 (9%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P V L+ + + A + H C S+ V G + V LL ++ +
Sbjct: 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLV-DLLRSPNQNVQQ 62
Query: 119 QSLQALKKISQEHPT---ACLRAGALMAVLSYL-DFFSTGVQRVALSTAANMCKKLPSDA 174
+ AL+ + T R + +S L + +Q+ N+
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS-STDELK 121
Query: 175 ADFVMEAVPLLTNLL----------------QYHDAKVLEHASVCLTRIAEAFASSPDKL 218
+ + +A+P+L + + + D +V +A+ CL ++ A +
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA---DAGRQ 178
Query: 219 DELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGIS 278
GL+ + + S ++ LS L
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 279 GILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTIS-----LPSSSN 333
+ S +G +N + + + E I + S
Sbjct: 239 NAYTEK-SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297
Query: 334 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQ 377
++ K ++G + + +EK L LLQ
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-07
Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 12/211 (5%)
Query: 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES 69
G ++ +++ L+++ E+ +Q + L + S T L+
Sbjct: 241 MKGCMRALVAQLKSESEDLQQ-VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299
Query: 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE----YMDLAEQSLQALK 125
+ AL +L + A + F+ LT + + E L+
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359
Query: 126 KIS------QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM 179
+S ++H L +L +L S + A T N+ + P D
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419
Query: 180 E-AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209
AV +L NL+ + ++ L +
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 50/322 (15%), Positives = 89/322 (27%), Gaps = 70/322 (21%)
Query: 1 MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLS-------IGTEESLSTFS 53
MG S H S L S +R G +VE + L ML T ++S+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQ 60
Query: 54 VDSFA-------PVLVGLLNHESNPDIMLL-----------AARALTHLCDVLPSSCAAV 95
+ P+L+ LL+ ++L A+ AL ++ P
Sbjct: 61 DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGR 120
Query: 96 VHYGAVTC-----------------------FVARLLTIEYMDLAEQSLQALKKISQ--E 130
+ + ++ L K+S E
Sbjct: 121 REIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 180
Query: 131 HPTACLRAGALMAVLSYL-----------DFFSTGVQRVALSTAANMCKKLPSDAADFVM 179
H A G L A+ L D +S ++R A N+ ++ A
Sbjct: 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240
Query: 180 E--AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237
+ L L+ + + + L + ++ + + L G V
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVLRNL--SWRADVNSKKTLREVGSVKALMECALEV 298
Query: 238 NSGGGQASLSTPTYTGLIRLLS 259
S+ + LS
Sbjct: 299 KKESTLKSV-----LSALWNLS 315
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 29/283 (10%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
L I+ D +++ L L ++ + + + +
Sbjct: 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPA-PVEHQ 164
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEY-----------MDLAEQSLQ 122
+ A L L A+ G + LL ++ + L +
Sbjct: 165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIA-ELLQVDCEMYGLTNDHYSITLRRYAGM 222
Query: 123 ALKKISQEHP----TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV 178
AL ++ T C G + A+++ L S +Q+V S N+ + ++ +
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282
Query: 179 ME--AVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELC--NHGLVTQAATL 233
E +V L L+ L ++ A + ++C + L TL
Sbjct: 283 REVGSVKALMECALEVKKESTLKSVLSALWNLS---AHCTENKADICAVDGALAFLVGTL 339
Query: 234 ISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276
S + S G++R +S+ + + + L
Sbjct: 340 TYRSQTNTLAIIESG---GGILRNVSSLIATNEDHRQILRENN 379
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 1e-06
Identities = 43/246 (17%), Positives = 72/246 (29%), Gaps = 28/246 (11%)
Query: 40 MLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99
+ S+ P ++ +L + AA L HLC V
Sbjct: 32 LDSLRKGGPPPPNWRQPELPEVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90
Query: 100 AVTCFVARLLTIEYMDLAEQSLQALKKIS----QEHPTACLRAGALMAVLSYL-DFFSTG 154
+ V LL ++ + ALK IS Q++ A + A++ L
Sbjct: 91 GIPVLV-GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMD 149
Query: 155 VQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL------------------QYHDAKV 196
+ V T N+ S + V A+ LT+ + V
Sbjct: 150 LTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208
Query: 197 LEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256
L + + CL + + S + GLV ++ S L+R
Sbjct: 209 LTNTAGCLRNV--SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266
Query: 257 LLSTCA 262
LS
Sbjct: 267 NLSYQV 272
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 9e-05
Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 13/206 (6%)
Query: 114 MDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172
SL +L + + P R L V++ L F V+ A + ++C +
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK 81
Query: 173 DAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA 231
D +P+L LL + +V A L I +F D + N V
Sbjct: 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI--SFGRDQDNKIAIKNCDGVPALV 139
Query: 232 TLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291
L+ + + TG + LS+ S + + +++
Sbjct: 140 RLLRKARDMDLTEVI-----TGTLWNLSSHDSIKMEIVDH----ALHALTDEVIIPHSGW 190
Query: 292 ANSAVPPALSRPAEQIFEIVNLANEL 317
R E + N A L
Sbjct: 191 EREPNEDCKPRHIEWESVLTNTAGCL 216
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 10/177 (5%)
Query: 14 LKKILSGLRA-DGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPD 72
L++ +S L A + A T + + E+ + L+ LL + N D
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFI-QHECFQKSEARKRVNQLRGILKLLQLLKVQ-NED 67
Query: 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132
+ AL +L + V V + L ++ +Q L +S
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 133 T-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
+ AL+ + + + + + K D L N+
Sbjct: 128 LKNLMITEALLTLTENI------IIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
|
| >1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286 | Back alignment and structure |
|---|
Score = 43.0 bits (99), Expect = 5e-04
Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 1/170 (0%)
Query: 787 PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
++ +G + + + P + + + A++ + + S N +
Sbjct: 86 FNIKEENTGNEGLILPNINSNNNIPHSGETNINTNTVEATNNSGATLNTNTSGNTNADVT 145
Query: 847 KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
+P E A + + + + ++ + ++K + K+ + +
Sbjct: 146 SQPKIEVKPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAK 205
Query: 907 ELDISPVEIDDALVIEDDDISD-DEDDDHEDVLKDDSLPLCLSDKVHDVK 955
+ S + D + E DD D + E+ D++L LCL DKV K
Sbjct: 206 KEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTK 255
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 6e-04
Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 15/190 (7%)
Query: 3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLV 62
GS S + L +L + + + Q L L E++S + L + + +A +L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKR--QYLLLHSLKEIISSASVVGLKPYVENIWALLLK 938
Query: 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQ 122
+ + A L L + P + + L +
Sbjct: 939 HCEC--AEEGTRNVVAECLGKLTLIDPETLLPRLK---------GYLISGSSYARSSVVT 987
Query: 123 ALKKISQEHPTACL--RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180
A+K +HP + L L+ V+RVAL T + PS D +
Sbjct: 988 AVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047
Query: 181 AVPLLTNLLQ 190
+P L N +
Sbjct: 1048 VLPHLYNETK 1057
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1720 | ||||
| d1c4za_ | 350 | d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) | 6e-79 | |
| d1nd7a_ | 374 | d.148.1.1 (A:) WW domain-containing protein 1, WWP | 3e-77 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 7e-17 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-04 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-05 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-04 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 |
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: Ubiquitin-protein ligase E3a (E6ap) species: Human (Homo sapiens) [TaxId: 9606]
Score = 263 bits (672), Expect = 6e-79
Identities = 104/425 (24%), Positives = 178/425 (41%), Gaps = 96/425 (22%)
Query: 1302 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQ 1355
+++V R+ I+D A +EM + + K L VE+ GE G G + EF+ L+ ++
Sbjct: 5 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 64
Query: 1356 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1415
+ M+ + S+ + + + + E
Sbjct: 65 NPDIGMFTYDEST---------------------------------KLFWFNPSSFE--- 88
Query: 1416 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1475
F L+G V+ A+ + +LD+ F Y+ ++G + D+ + L++
Sbjct: 89 ---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKD 145
Query: 1476 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYI-LKPGDE 1529
L L + G +D+ + F + G P LK +
Sbjct: 146 L-----------------------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGD 182
Query: 1530 NVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITS-LQIFTPHELDHLLCG 1586
+ I N +E+++L D + + +Q +AFR GF+ V + + +F P E++ L+CG
Sbjct: 183 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 242
Query: 1587 RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGL 1646
R + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GGL
Sbjct: 243 SRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 301
Query: 1647 AVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1706
L K+ I + + LP+ TC N L LP YS+KE + ++L
Sbjct: 302 GKL--KMIIAKNGPD----------------TERLPTSHTCFNVLLLPEYSSKEKLKERL 343
Query: 1707 VYAIS 1711
+ AI+
Sbjct: 344 LKAIT 348
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 258 bits (661), Expect = 3e-77
Identities = 103/418 (24%), Positives = 158/418 (37%), Gaps = 73/418 (17%)
Query: 1302 KVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVG 1358
K+ VSR + + + + + + L V + GE G G E++ LLS ++
Sbjct: 25 KINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPM 84
Query: 1359 LAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSK 1418
++ + + P S +
Sbjct: 85 YCLFEYAGKNN-----------------------------YCLQINPASTINPD------ 109
Query: 1419 VIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV 1478
+ YF +GR +A AL G+ +D FS FYK +L +L + D+ D EF L +
Sbjct: 110 HLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIR- 168
Query: 1479 IVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNL 1536
DN E L + ++ L + LK G N V N
Sbjct: 169 -------------DNNIEECGLEMYFSVDMEI-----LGKVTSHDLKLGGSNILVTEENK 210
Query: 1537 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAAL 1596
+EYI L+ + G+ Q +AF GFN+V + LQ F EL+ +LCG +E+
Sbjct: 211 DEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQ 270
Query: 1597 AEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIV 1656
+ YT S I+ + + E + + QFVTG RLP GG A L
Sbjct: 271 RNTV--YRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQ 328
Query: 1657 RKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1714
+ D LP TC N L LPPY + E + +KL++AI E +
Sbjct: 329 KFCIEKVGK------------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.6 bits (205), Expect = 7e-17
Identities = 72/431 (16%), Positives = 147/431 (34%), Gaps = 33/431 (7%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
L ++ L +D + +Q+ A + ++LS + P LV + +
Sbjct: 78 LPQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 136
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS---QE 130
L AA ALT++ + VV AV F+ +LL +++ EQ++ AL ++ +
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDSTD 195
Query: 131 HPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLL 189
+ L+ A+ +L + + R A T +N+C+ K P V +A+P L L+
Sbjct: 196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 255
Query: 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249
D + L A ++ +++ + + ++ + + + ST ++
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 315
Query: 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG------------VSANSAVP 297
++ +G + LL I K+ V + +P
Sbjct: 316 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 375
Query: 298 PALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNG 357
P + ++ A + G + P V + P + D
Sbjct: 376 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI--KPLCDLLEIADNRI 433
Query: 358 NASEVSAREKLLSDQPELLQQFGMDLLPVL-----------IQIYGSSVNSPVRHKCLSV 406
+ A E +L + G+++ I + N + K +
Sbjct: 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 493
Query: 407 IGKLMYFSSAE 417
I YF E
Sbjct: 494 IET--YFGEEE 502
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.9 bits (190), Expect = 3e-15
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 12/203 (5%)
Query: 1 MGGSASS-SHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAP 59
M S+ + ++ I+ G+ ++ E Q++A ++LS + + P
Sbjct: 1 MADIGSNQGTVNWSVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIP 59
Query: 60 VLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQ 119
V L I +A ALT++ AVV GA+ F++ L + ++EQ
Sbjct: 60 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQ 118
Query: 120 SLQALKKISQEHPT---ACLRAGALMAVLSYLDF-----FSTGVQRVALSTAANMCKKLP 171
++ AL I+ + ++ GA+ +L+ L + G R T +N+C+
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178
Query: 172 SDAADFVM-EAVPLLTNLLQYHD 193
+ + +P L LL ++D
Sbjct: 179 PAPPLDAVEQILPTLVRLLHHND 201
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 3e-09
Identities = 53/464 (11%), Positives = 121/464 (26%), Gaps = 53/464 (11%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P V L+ + + + A + H C S+ V G + V LL ++ +
Sbjct: 5 PKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLV-DLLRSPNQNVQQ 62
Query: 119 QSLQALKKISQEHPT---ACLRAGALMAVLS-YLDFFSTGVQRVALSTAANMCKKLPSDA 174
+ AL+ + T R + +S + +Q+ N+
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 175 ADFVMEAVPLLTNLL---------------QYHDAKVLEHASVCLTRIAEAFASSP---- 215
L ++ + D +V +A+ CL ++ A A
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 216 -----DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270
D L + + S N +LS + +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 271 TLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPS 330
G D + + + + + ++ + +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPE---EETNPKGSGWLYH--SDAIRTYLN---LMGK 294
Query: 331 SSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQI 390
S ++ K ++G + + +EK L P++ + V+
Sbjct: 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGL---PQIARLLQSGNSDVVRSG 351
Query: 391 YGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQI 450
N V+G ++ + + + +L +
Sbjct: 352 ASLLSNMSRHPLLHRVMGN-------QVFPEVTRLLTSHTGNTS----NSEDILSSACYT 400
Query: 451 AEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSA 494
LM P +K + +++ + L + + A
Sbjct: 401 VRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 9e-07
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%)
Query: 78 ARALTHLCDVLPSSCAAV-VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH--PTA 134
A+ L +L + + + ++ E AL ++++
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455
Query: 135 CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME--AVPLLTNLLQYH 192
+ + L +QRVA + + +AA+ + A LT LL
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR 513
Query: 193 DAKVLEHASVCLTRIA 208
+ V +A+ L R++
Sbjct: 514 NEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 2e-04
Identities = 25/146 (17%), Positives = 38/146 (26%), Gaps = 40/146 (27%)
Query: 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAE 118
P L LLN E + ++ AA + L S A + V+ V + ++
Sbjct: 20 PELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE--- 75
Query: 119 QSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV 178
R T N+ A F
Sbjct: 76 ------------------------------------TARCTAGTLHNLSHHREGLLAIFK 99
Query: 179 MEAVPLLTNLLQYHDAKVLEHASVCL 204
+P L +L VL +A L
Sbjct: 100 SGGIPALVKMLGSPVDSVLFYAITTL 125
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-05
Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 18/201 (8%)
Query: 33 ALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92
A L L L S +++ LL + N ++ LA + L L +
Sbjct: 23 ATNDLMTELQ-KDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQ 80
Query: 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---- 148
+ + + + L + S LK + E P A + V +
Sbjct: 81 V-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135
Query: 149 -----DFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVC 203
VQ AL A+M + +F + L L V + +
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 204 LTRIAEAFASSPDKLDELCNH 224
L + + +L H
Sbjct: 196 LGHLVMSC--GNIVFVDLIEH 214
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 8e-04
Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 15/190 (7%)
Query: 3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLV 62
GS S + L +L + + + Q L L E++S + L + V++ +L+
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKR--QYLLLHSLKEIISSASVVGLKPY-VENIWALLL 934
Query: 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQ 122
+ A L L + P + + L +
Sbjct: 935 KHCECA-EEGTRNVVAECLGKLTLIDPETLLPRL---------KGYLISGSSYARSSVVT 984
Query: 123 ALKKISQEHPTAC--LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180
A+K +HP L + L L+ V+RVAL T + PS D +
Sbjct: 985 AVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 181 AVPLLTNLLQ 190
+P L N +
Sbjct: 1045 VLPHLYNETK 1054
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 3e-04
Identities = 19/167 (11%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 67 HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKK 126
+ D M++A L+ L + L + +V + + + + + ++ + S L
Sbjct: 632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691
Query: 127 ISQEHPTACL-RAGALMAVL-SYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184
+++ M +L + L+ V A + ++ + ++ +
Sbjct: 692 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 751
Query: 185 LTNLLQYHDAK--VLEHASVCLTRIAEAFASS-----PDKLDELCNH 224
L ++ + +LE+ ++ + R+ + C
Sbjct: 752 LVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS 798
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1720 | |||
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d1c4za_ | 350 | Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.97 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.87 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.85 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.65 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.59 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.57 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.55 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.51 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.45 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.32 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.24 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.16 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.12 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 99.09 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.06 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.56 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.56 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.97 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.8 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.77 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.57 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 95.97 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 91.39 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 83.0 |
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=613.33 Aligned_cols=338 Identities=30% Similarity=0.459 Sum_probs=299.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 303999707028999999996502--897317999827632377-50589999999998325889832389999998544
Q 000286 1299 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~--~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1375 (1720)
.+.+++|+|++|++|+++.+.... ..+++|+|+|.||+|+|. ||+||||+++++|+++|+++||+.++.+
T Consensus 22 ~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el~~p~~~lf~~~~~~------- 94 (374)
T d1nd7a_ 22 SHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKN------- 94 (374)
T ss_dssp SEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSS-------
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC-------
T ss_conf 8559997656589999999971698984787699978987447871199999999999808866875664798-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 68888889987888873025788877999999777668870347899987053300010039823566789999988099
Q 000286 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1720)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~ 1455 (1720)
.+ .++|+|..... .+++++|+|+|+++|+||+++.+++++|+++|||+|+|+
T Consensus 95 ---------------~~-----~~~~~p~~~~~--------~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~ 146 (374)
T d1nd7a_ 95 ---------------NY-----CLQINPASTIN--------PDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSK 146 (374)
T ss_dssp ---------------SC-----CEEECGGGGGS--------TTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTC
T ss_pred ---------------CC-----CCCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf ---------------85-----53558744368--------058999988579999999849613877568999885499
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-----CCCCEECCCCCC-
Q ss_conf 78925400007999999999999985443210014676210111333588644452200149-----997221169995-
Q 000286 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYILKPGDE- 1529 (1720)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp-----g~~~~eL~pgG~- 1529 (1720)
+++++||..+||+++++|+++.+. + .+..+++++|++. ....+||+|||+
T Consensus 147 ~~t~~DL~~iD~~~~~sl~~l~~~------------~------------~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~ 202 (374)
T d1nd7a_ 147 KLTIKDLESIDTEFYNSLIWIRDN------------N------------IEECGLEMYFSVDMEILGKVTSHDLKLGGSN 202 (374)
T ss_dssp CCCHHHHHTTCHHHHHHHHHHHSS------------C------------SCSSCCCCBSEECCCSSTTCCCEESSTTGGG
T ss_pred CCCHHHHHHHCHHHHHHHHHHHHC------------C------------CCCCCCCEEEEEEEECCCCCCEEECCCCCCC
T ss_conf 898999988578988749999854------------6------------4104660357877512787422544789976
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCC
Q ss_conf -3370319999999999997730799999998412213343222588998898641388878887886321086387799
Q 000286 1530 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1608 (1720)
Q Consensus 1530 -~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~~ 1608 (1720)
+||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||.+++ |+++|++++.|. ||+.
T Consensus 203 ~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i-d~~~l~~~~~y~-gy~~ 280 (374)
T d1nd7a_ 203 ILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEV-DLADWQRNTVYR-HYTR 280 (374)
T ss_dssp CBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCC-CHHHHHHTEEEE-SCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCCC-CHHHHHHHEEEC-CCCC
T ss_conf 52068789999999999997211789999999869876798987648899999862799877-889996432613-6789
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9768999999980299999987514113888889899766798-----15898338999988888999999998999965
Q 000286 1609 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1683 (1720)
Q Consensus 1609 ~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1683 (1720)
+|+.|+|||+||.+|+++||++||+|+||++|+|+|||++|.+ +++|.+.. +|++||+
T Consensus 281 ~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~~~~~i~~~~-----------------~~~~LP~ 343 (374)
T d1nd7a_ 281 NSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG-----------------KDTWLPR 343 (374)
T ss_dssp TSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCS-----------------CTTSCCE
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHHHCCCCCCCCEEECCCC-----------------CCCCCCC
T ss_conf 98899999998770699999874466368998898645654356788751314689-----------------9999970
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 3065582136799999999999999998098
Q 000286 1684 VMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1714 (1720)
Q Consensus 1684 a~TC~n~LkLP~YsS~eilkekL~~AI~eg~ 1714 (1720)
||||||+|+||+|+|+|+|++||++||+|++
T Consensus 344 A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 344 SHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp EEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5440267669898899999999999997149
|
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: Ubiquitin-protein ligase E3a (E6ap) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=599.21 Aligned_cols=334 Identities=31% Similarity=0.520 Sum_probs=296.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-----CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 303999707028999999996502-----897317999827632377-50589999999998325889832389999998
Q 000286 1299 ERQKVRVSRNRILDSAAKVMEMYS-----SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1372 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~-----~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~ 1372 (1720)
+..+++|+|++|++|+++++..+. ..+++|+|+|.||+|+|. ||+||||+++++|+++|+++||..++.+
T Consensus 2 p~l~i~v~R~~i~~d~~~~~~~~~~~~~~~l~~~~~V~F~gE~g~D~GG~~rE~~~~l~~el~~p~~~lf~~~~~~---- 77 (350)
T d1c4za_ 2 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST---- 77 (350)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT----
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC----
T ss_conf 9679997557689999999998621186862760799966886257982789999999999828766874026887----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHH
Q ss_conf 54468888889987888873025788877999999777668870347899987053300010039823566789999988
Q 000286 1373 MEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLV 1452 (1720)
Q Consensus 1373 ~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~l 1452 (1720)
.. ++|.|... ...++|+++|+++|+||+++.+++++|+++|||.|
T Consensus 78 -----------------~~-------~~~~~~~~-----------~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~L 122 (350)
T d1c4za_ 78 -----------------KL-------FWFNPSSF-----------ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 122 (350)
T ss_dssp -----------------TE-------EEECTTCC-----------SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHH
T ss_pred -----------------CC-------CCCCCCCH-----------HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf -----------------65-------66885200-----------01547888999999999879975866788999987
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-----C-CCCEECCC
Q ss_conf 09978925400007999999999999985443210014676210111333588644452200149-----9-97221169
Q 000286 1453 LGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----G-YPDYILKP 1526 (1720)
Q Consensus 1453 lg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp-----g-~~~~eL~p 1526 (1720)
+|.+++++|+..+||+++++|++|..+ ++...++++++|+++ | ...+||+|
T Consensus 123 lg~~~t~~Dl~~~D~~~~~sl~~l~~~-----------------------~~~~~~~~~l~f~~~~~~~~g~~~~~eL~p 179 (350)
T d1c4za_ 123 MGKKGTFRDLGDSHPVLYQSLKDLLEY-----------------------EGNVEDDMMITFQISQTDLFGNPMMYDLKE 179 (350)
T ss_dssp TTCCCCHHHHHHHSHHHHHHHHHHHHC-----------------------CSCHHHHTCCBSEEEECCTTTCCEEEESST
T ss_pred CCCCCCCCCHHHHCHHHHHHHHHHHHC-----------------------CCCHHHHCCEEEEEECCCCCCCEEEEECCC
T ss_conf 599886431566298999999999874-----------------------895476530058984134799768997268
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHEEEC
Q ss_conf 995--33703199999999999977307999999984122133432225-889988986413888788878863210863
Q 000286 1527 GDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFD 1603 (1720)
Q Consensus 1527 gG~--~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~GF~~V~p~~~L~-~F~~~EL~~li~G~~~~w~~~~L~~~~~~~ 1603 (1720)
||+ +||.+|+++||+++++|++.++++.|++|||+||++|+|...|+ +|+|+||+.++||.++ +++++|+++++|.
T Consensus 180 ~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~G~~~-i~~~~L~~~~~y~ 258 (350)
T d1c4za_ 180 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEYD 258 (350)
T ss_dssp TTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCC-CCCTTTSTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC
T ss_conf 987422459999999999999998623499999999868775484266442799999884079986-4678998607025
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87799976899999998029999998751411388888989976679815898338999988888999999998999965
Q 000286 1604 HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1683 (1720)
Q Consensus 1604 ~Gy~~~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1683 (1720)
+||+.+++.|+|||+|+.+|+++||++||+|+||++|+|+|||+.+ +++|.+... ++++||+
T Consensus 259 ~g~~~~~~~i~~fw~vl~~~t~eer~~fL~F~TG~~rlP~~G~~~l--~~~i~~~~~----------------~~~~LP~ 320 (350)
T d1c4za_ 259 GGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGP----------------DTERLPT 320 (350)
T ss_dssp SSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEEE----------------SCSCCCE
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCCC--EEEEEECCC----------------CCCCCCH
T ss_conf 7889764889899999872899999874488479998998875446--269985899----------------9888970
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 306558213679999999999999999809
Q 000286 1684 VMTCANYLKLPPYSTKEIMYKKLVYAISEG 1713 (1720)
Q Consensus 1684 a~TC~n~LkLP~YsS~eilkekL~~AI~eg 1713 (1720)
||||||+|+||+|+|+|+||+||++||++.
T Consensus 321 a~TCf~~L~LP~Y~s~e~l~~kL~~AI~~s 350 (350)
T d1c4za_ 321 SHTCFNVLLLPEYSSKEKLKERLLKAITYA 350 (350)
T ss_dssp EEGGGTEEEEEECSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 765016677979789999999999998568
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-44 Score=289.13 Aligned_cols=389 Identities=19% Similarity=0.262 Sum_probs=331.6
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 66203999999821299999999999999999826998552211000939999984139999899999999999963069
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~ 88 (1720)
.....++.++..++++ |...++.|+..++++++...++++..+...|++|.|+++|+...+.++|..|+|+|+||+.+.
T Consensus 73 ~~~~~l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~ 151 (503)
T d1wa5b_ 73 QLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 151 (503)
T ss_dssp ---CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8889999999986499-999999999999999740788439999987984999998717999999999999999997498
Q ss_pred CCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 720112101461899999973199688999999999984216943---35342832678631014894899999999987
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1720)
Q Consensus 89 ~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1720)
++.+..+++.|++|.|+ .++.+++.+++++|+|+|+||+.+++. .+++.|++++++.++......+++.++|++.|
T Consensus 152 ~~~~~~~~~~g~i~~l~-~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~n 230 (503)
T d1wa5b_ 152 SAQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 230 (503)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 88779999678747899-98559971589999999999854118999988741355630120456888999999999999
Q ss_pred HCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 20599-98626887280799999550699889999999999987313999777999983991799999514799999988
Q 000286 166 MCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 166 lc~~~-~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~ 244 (1720)
+|++. +...+..+.+++|.|..++.+.|.+++..+||++.+++.. .++....+++.|+++.++.++.+.
T Consensus 231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~l~~ll~~~------- 300 (503)
T d1wa5b_ 231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHE------- 300 (503)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCS-------
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCCCC-------
T ss_conf 8468742047999999999999872356389999999998753227---711110011223311101102578-------
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8896699999999999831998999999982985999996329995----565434534689977899999974031799
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPP 320 (1720)
Q Consensus 245 ~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~ 320 (1720)
+..+...++++|++++.+++..+..+++.|+++.|..+|.+... ...|++++++.++.+++..+++
T Consensus 301 --~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-------- 370 (503)
T d1wa5b_ 301 --STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID-------- 370 (503)
T ss_dssp --CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--------
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH--------
T ss_conf --6364456777777787788887876312340999999963997888999987788886146988899997--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 98898888866411015875447999989987888888510356787610497999999987899999987114897899
Q 000286 321 LPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVR 400 (1720)
Q Consensus 321 L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~ss~~~~VR 400 (1720)
..++|.+++.+.+ .++.|+
T Consensus 371 ------------------------------------------------------------~~~l~~li~~l~~-~~~~v~ 389 (503)
T d1wa5b_ 371 ------------------------------------------------------------ANLIPPLVKLLEV-AEYKTK 389 (503)
T ss_dssp ------------------------------------------------------------TTCHHHHHHHHHH-SCHHHH
T ss_pred ------------------------------------------------------------CCCCCHHHHHCCC-CCHHHH
T ss_conf ------------------------------------------------------------1465236776026-873689
Q ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC----------CHHHHHHHHH
Q ss_conf 999999999830489--9999996300235789998850479832876999999999517----------0246566786
Q 000286 401 HKCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKL----------PGTFSKMFVR 468 (1720)
Q Consensus 401 ~~~L~~l~riv~~~~--~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K~----------pd~f~~~f~R 468 (1720)
+.+.+++.+++.... ++.+..++... +-..|..+|.+.|..++..+|..+..|++.. ...|...|.+
T Consensus 390 ~~a~~~l~nl~~~~~~~~~~~~~l~~~~-~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee 468 (503)
T d1wa5b_ 390 KEACWAISNASSGGLQRPDIIRYLVSQG-CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 468 (503)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHHTT-CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCC-CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999736535489999999897-699999986599889999999999999998887756530230189999998
Q ss_pred HCHHHHHHHHHHC
Q ss_conf 3689999997723
Q 000286 469 EGVVHAVDQLILA 481 (1720)
Q Consensus 469 EGV~~~i~~L~~~ 481 (1720)
.|.+..|+.|..+
T Consensus 469 ~g~~~~i~~Lq~~ 481 (503)
T d1wa5b_ 469 AGGMEKIFNCQQN 481 (503)
T ss_dssp TTHHHHHHGGGGC
T ss_pred CCCHHHHHHHHCC
T ss_conf 8779999998769
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-41 Score=273.69 Aligned_cols=399 Identities=19% Similarity=0.293 Sum_probs=332.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99888866203999999821299999999999999999826998552211000939999984139999899999999999
Q 000286 3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1720)
Q Consensus 3 ~~~~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~ 82 (1720)
.+.-.+..+..++.+++.|+++ |+..|..|+.+++++++...++++..+...|++|.|+++|+..+++++|..|+|+|.
T Consensus 4 ~~~~~~~~~~~i~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 82 (434)
T d1q1sc_ 4 IGSNQGTVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 82 (434)
T ss_dssp CCSTTSSSSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 4455322652499999987698-999999999999998637998329999988899999998746998899999999999
Q ss_pred HHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCC-----CHH
Q ss_conf 963069720112101461899999973199688999999999984216943---353428326786310148-----948
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-----STG 154 (1720)
Q Consensus 83 NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-----~~~ 154 (1720)
|++...++.+..+++.|+||.|+ .++.+++.+++++|+|+|.||+.+.+. .+.+.|++..++.++... ...
T Consensus 83 ~la~~~~~~~~~i~~~~~i~~l~-~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~ 161 (434)
T d1q1sc_ 83 NIASGTSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 161 (434)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 98639855104766446315666-40356879999999999998850016899999986300589999872232100189
Q ss_pred HHHHHHHHHHHHCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999998720599-986268872807999995506998899999999999873139997779999839917999995
Q 000286 155 VQRVALSTAANMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~-~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~L 233 (1720)
.++.++|+++|+|.+. .........+++|.|..++.+.|..++..++|++++++.. .++....+...|+++.|+++
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~Lv~l 238 (434)
T d1q1sc_ 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKL 238 (434)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH---HHHHHHHHHHCCCCHHCCCC
T ss_conf 999999999888642642211443656999999998524420125677664022012---34567777631542010000
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 14799999988889669999999999983199899999998298599999632999556543453468997789999997
Q 000286 234 ISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNL 313 (1720)
Q Consensus 234 L~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~l 313 (1720)
+.+. +..++..++++|++++.+++..+..+++.|+++.|..+|.+.... -...++..
T Consensus 239 l~~~---------~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--------------v~~~a~~~ 295 (434)
T d1q1sc_ 239 LGAT---------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN--------------IQKEATWT 295 (434)
T ss_dssp HTCS---------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH--------------HHHHHHHH
T ss_pred CCCC---------HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHH--------------HHHHHHHH
T ss_conf 2343---------065540212213567766667789998525640577761364146--------------66888878
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 4031799988988888664110158754479999899878888885103567876104979999999-878999999871
Q 000286 314 ANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYG 392 (1720)
Q Consensus 314 i~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llp~L~~vy~ 392 (1720)
+..+. ...++....+. ..++|.+++.+.
T Consensus 296 L~~l~---------------------------------------------------~~~~~~~~~i~~~~~i~~li~~l~ 324 (434)
T d1q1sc_ 296 MSNIT---------------------------------------------------AGRQDQIQQVVNHGLVPFLVGVLS 324 (434)
T ss_dssp HHHHT---------------------------------------------------TSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHC---------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 86520---------------------------------------------------045045777766546899998775
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---C--CHHHHHHHH
Q ss_conf 14897899999999999830489999999630023578999885047983287699999999951---7--024656678
Q 000286 393 SSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK---L--PGTFSKMFV 467 (1720)
Q Consensus 393 ss~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K---~--pd~f~~~f~ 467 (1720)
+ .++.||..+++++.+++...+++.+..+++...+ ..|..++.+.|+.++..+|..+..|++. . .+.|...|+
T Consensus 325 ~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i-~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~ 402 (434)
T d1q1sc_ 325 K-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII-EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 402 (434)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 1-5868899999999999834999999999989769-9999986599989999999999999998875477489999999
Q ss_pred HHCHHHHHHHHHHCC
Q ss_conf 636899999977238
Q 000286 468 REGVVHAVDQLILAG 482 (1720)
Q Consensus 468 REGV~~~i~~L~~~~ 482 (1720)
+.|.+..|+.|..++
T Consensus 403 ~~~~~~~i~~L~~~~ 417 (434)
T d1q1sc_ 403 ECGGLDKIEALQRHE 417 (434)
T ss_dssp HTTSHHHHHHHHTCS
T ss_pred HCCCHHHHHHHHCCC
T ss_conf 868799999988699
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.8e-30 Score=201.25 Aligned_cols=344 Identities=15% Similarity=0.130 Sum_probs=242.5
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-CCHHHHCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCC
Q ss_conf 009399999841399998999999999999630697-2011210146189999997319-96889999999999842169
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP-SSCAAVVHYGAVTCFVARLLTI-EYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 54 ~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~-~~~~~iV~~GaIp~Lv~kLL~s-~~~dL~Eqal~aL~nIS~~~ 131 (1720)
....++.++..+.++ +.+.|..|+.++..+..... .....++++|+||.|+ .++.. .+.+++..|+|+|.||+...
T Consensus 74 ~~~~l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv-~~l~~~~~~~iq~~a~~~L~ni~~~~ 151 (503)
T d1wa5b_ 74 LQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV-EFMRENQPEMLQLEAAWALTNIASGT 151 (503)
T ss_dssp --CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHH-HTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 889999999986499-9999999999999997407884399999879849999-98717999999999999999997498
Q ss_pred CC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 43---35342832678631014894899999999987205999-862688728079999955069988999999999998
Q 000286 132 PT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 207 (1720)
Q Consensus 132 ~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L 207 (1720)
.. .+...|+++.++.+|...+..++..|+|+++|++...+ ........++++.|..++.+.+..++..++|++.++
T Consensus 152 ~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl 231 (503)
T d1wa5b_ 152 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 231 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 88779999678747899985599715899999999998541189999887413556301204568889999999999998
Q ss_pred HHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 73139997779999839917999995147999999888896699999999999831998999999982985999996329
Q 000286 208 AEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 208 ~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
+.. ...........++++.|+.++.+. +..+...++++|++++..+++....+++.++++.+..++.+
T Consensus 232 ~~~---~~~~~~~~~~~~~l~~l~~~l~~~---------d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 299 (503)
T d1wa5b_ 232 CRG---KKPQPDWSVVSQALPTLAKLIYSM---------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 299 (503)
T ss_dssp HCC---SSSCCCHHHHGGGHHHHHHHTTCC---------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HCC---CCCCHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 468---742047999999999999872356---------38999999999875322771111001122331110110257
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99556543453468997789999997403179998898888866411015875447999989987888888510356787
Q 000286 288 SGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREK 367 (1720)
Q Consensus 288 ~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 367 (1720)
.... -...++..+..+.-
T Consensus 300 ~~~~--------------v~~~al~~l~nl~~------------------------------------------------ 317 (503)
T d1wa5b_ 300 ESTL--------------VQTPALRAVGNIVT------------------------------------------------ 317 (503)
T ss_dssp SCHH--------------HHHHHHHHHHHHTT------------------------------------------------
T ss_pred CCHH--------------HHHHHHHHHHHHHH------------------------------------------------
T ss_conf 8636--------------44567777777877------------------------------------------------
Q ss_pred HHCCCHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 6104979999999-878999999871148978999999999998304899999996300235789998850479832876
Q 000286 368 LLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIP 446 (1720)
Q Consensus 368 ~~~~~pe~~~~f~-~~llp~L~~vy~ss~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~ 446 (1720)
...+....++ ..++|.|.....+ .+..||+.++++|.++... +++....++... +-..+..++.+.+..+...
T Consensus 318 ---~~~~~~~~~~~~~~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~-~l~~li~~l~~~~~~v~~~ 391 (503)
T d1wa5b_ 318 ---GNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAG-NTEQIQAVIDAN-LIPPLVKLLEVAEYKTKKE 391 (503)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTT-CHHHHHHHHHHSCHHHHHH
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHC-CHHHHHHHHHCC-CCCHHHHHCCCCCHHHHHH
T ss_conf ---888878763123409999999639-9788899998778888614-698889999714-6523677602687368999
Q ss_pred HHHHHHHHHHHCC--HHHHHHHHHHCHHHHHHHHH
Q ss_conf 9999999995170--24656678636899999977
Q 000286 447 SLQIAEILMEKLP--GTFSKMFVREGVVHAVDQLI 479 (1720)
Q Consensus 447 aL~i~~~Ll~K~p--d~f~~~f~REGV~~~i~~L~ 479 (1720)
|..++..+..... ......+...|++..+-.+.
T Consensus 392 a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L 426 (503)
T d1wa5b_ 392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 426 (503)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999736535489999999897699999986
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.9e-27 Score=186.24 Aligned_cols=346 Identities=15% Similarity=0.144 Sum_probs=252.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC-HHHHCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCC
Q ss_conf 000939999984139999899999999999963069720-1121014618999999731-99688999999999984216
Q 000286 53 SVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS-CAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 53 ~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~-~~~iV~~GaIp~Lv~kLL~-s~~~dL~Eqal~aL~nIS~~ 130 (1720)
.....|..||+.|.++ +++.|..|+.+|.++....... ...+++.|+||.|+ +++. .++.+++..++|+|.|||..
T Consensus 10 ~~~~~i~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~la~~ 87 (434)
T d1q1sc_ 10 TVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV-SFLGKTDCSPIQFESAWALTNIASG 87 (434)
T ss_dssp SSSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHH-HHTTCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 2652499999987698-9999999999999986379983299999888999999-9874699889999999999998639
Q ss_pred CCC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-CHHHHHHCCHHHHHHHHCCCC-----HHHHHHHH
Q ss_conf 943---353428326786310148948999999999872059998-626887280799999550699-----88999999
Q 000286 131 HPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS-DAADFVMEAVPLLTNLLQYHD-----AKVLEHAS 201 (1720)
Q Consensus 131 ~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~-~~~~~i~~~ip~L~~lL~~~D-----~~V~e~A~ 201 (1720)
.+. .+++.|+++.++.+|...+..+++.|+|++.|+|...+. .......++++.|..++...+ ...+..++
T Consensus 88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 167 (434)
T d1q1sc_ 88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 167 (434)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 85510476644631566640356879999999999998850016899999986300589999872232100189999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Q ss_conf 99999873139997779999839917999995147999999888896699999999999831998999999982985999
Q 000286 202 VCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGIL 281 (1720)
Q Consensus 202 ~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L 281 (1720)
|++++++.+ ...........++++.++.++... +..++..++++|++++..++.....+.+.|+++.|
T Consensus 168 ~~l~~~~~~---~~~~~~~~~~~~~l~~l~~ll~~~---------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 235 (434)
T d1q1sc_ 168 WTLSNLCRN---KNPAPPLDAVEQILPTLVRLLHHN---------DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 235 (434)
T ss_dssp HHHHHHTCC---CTTCCCHHHHHHHHHHHHHHTTCS---------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHCC---------CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHC
T ss_conf 999888642---642211443656999999998524---------42012567766402201234567777631542010
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99632999556543453468997789999997403179998898888866411015875447999989987888888510
Q 000286 282 KDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASE 361 (1720)
Q Consensus 282 ~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 361 (1720)
..++.+... +-...++..+..+.
T Consensus 236 v~ll~~~~~--------------~~~~~al~~l~~l~------------------------------------------- 258 (434)
T d1q1sc_ 236 VKLLGATEL--------------PIVTPALRAIGNIV------------------------------------------- 258 (434)
T ss_dssp HHHHTCSCH--------------HHHHHHHHHHHHHT-------------------------------------------
T ss_pred CCCCCCCHH--------------HHHHCHHHHHHHHH-------------------------------------------
T ss_conf 000234306--------------55402122135677-------------------------------------------
Q ss_pred HHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 3567876104979999999-878999999871148978999999999998304899999996300235789998850479
Q 000286 362 VSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD 440 (1720)
Q Consensus 362 ~~~r~~~~~~~pe~~~~f~-~~llp~L~~vy~ss~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d 440 (1720)
..+++....++ ..+++.|+.+.. +.+..||+.+++++.++... ..+....+.... +-..+..++...+
T Consensus 259 --------~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~-~i~~li~~l~~~~ 327 (434)
T d1q1sc_ 259 --------TGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAG-RQDQIQQVVNHG-LVPFLVGVLSKAD 327 (434)
T ss_dssp --------TSCHHHHHHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTT-CHHHHHHHHHSSC
T ss_pred --------HHHHHHHHHHHHCCCCCHHHHHHC-CCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHH-HHHHHHHHHHCCC
T ss_conf --------666677899985256405777613-64146668888788652004-504577776654-6899998775158
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 8328769999999995170246566786368999999772
Q 000286 441 PHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 441 ~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~i~~L~~ 480 (1720)
..+...|+..+..+...........+.+.|++..+-.+..
T Consensus 328 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 367 (434)
T d1q1sc_ 328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367 (434)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 6889999999999983499999999998976999999865
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-25 Score=171.52 Aligned_cols=383 Identities=11% Similarity=0.105 Sum_probs=261.3
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2039999998212999999999999999998269985522-110009399999841399998999999999999630697
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLS-TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~-~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~ 89 (1720)
...++.|+..|+++ |..++..|+..++++... +.... .+...++++.|+++|....+++++..|+++|.+++. .+
T Consensus 16 ~~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~ 91 (529)
T d1jdha_ 16 TRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 91 (529)
T ss_dssp -CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CC
T ss_conf 97999999987299-999999999999999845--577899987133999999998479999999999999999958-91
Q ss_pred CCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 20112101461899999973199688999999999984216943---353428326786310148948999999999872
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 90 ~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
+.+..+++.|+||.|+ ++|..++.++++.|+++|.||+.+... .+.+.|+++.++.+|+..+..+++.+++++.++
T Consensus 92 ~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 170 (529)
T d1jdha_ 92 EGLLAIFKSGGIPALV-KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 6699999879899999-985797989999999999986513201136787658814899988705768888889999887
Q ss_pred CCCCC-CCHHHHHHCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 05999-86268872807999995506-99889999999999987313999777999983991799999514799999988
Q 000286 167 CKKLP-SDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 167 c~~~~-~~~~~~i~~~ip~L~~lL~~-~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~ 244 (1720)
+...+ ........++++.|..++.+ .+..++..+++++.+++. .++....+++.|.++.|+.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~----~~~~~~~~~~~g~~~~L~~ll~~~------- 239 (529)
T d1jdha_ 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTDP------- 239 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----STTHHHHHHHTTHHHHHHTTTTSS-------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHCCC-------
T ss_conf 630047888887605636899999861048999999998751101----332330456543334699986254-------
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88966999999999998319989999999829859999963299955654345346899778999999740317999889
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQG 324 (1720)
Q Consensus 245 ~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~ 324 (1720)
+..++..++++|.++....... ....++++.|.+++...+. +-...++..+..|
T Consensus 240 --~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~--------------~~~~~a~~~L~~l------- 293 (529)
T d1jdha_ 240 --SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDI--------------NVVTCAAGILSNL------- 293 (529)
T ss_dssp --CHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCH--------------HHHHHHHHHHHHH-------
T ss_pred --CHHHHHHHHHHHHHCCCCCCCH---HHHHHCCHHHHHHCCCCCH--------------HHHHHHHHHHHHH-------
T ss_conf --0155530156777504321102---5664010144541245428--------------8999999988750-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHH
Q ss_conf 88888664110158754479999899878888885103567876104979999999-878999999871-1489789999
Q 000286 325 TISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYG-SSVNSPVRHK 402 (1720)
Q Consensus 325 ~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llp~L~~vy~-ss~~~~VR~~ 402 (1720)
...+++....+. ...++.|+.... .+-...+...
T Consensus 294 --------------------------------------------~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~ 329 (529)
T d1jdha_ 294 --------------------------------------------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp --------------------------------------------TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf --------------------------------------------122037888888750078999999840011137889
Q ss_pred HHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 99999998304899-9999963002357899988504798-328769999999995170246566786368999999772
Q 000286 403 CLSVIGKLMYFSSA-EMIQSLLSVTNISSFLAGVLAWKDP-HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 403 ~L~~l~riv~~~~~-~~L~~~l~~~~~ss~la~il~~~d~-~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~i~~L~~ 480 (1720)
++.++..+...... +..+..+........+..++...+. .++..++.++..|- .. ......+.+.|++..+-.+..
T Consensus 330 a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~-~~-~~~~~~l~~~g~i~~L~~lL~ 407 (529)
T d1jdha_ 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LC-PANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT-TS-GGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC-HH-HHHHHHHHHCCCHHHHHHHHH
T ss_conf 9988500220000000356667764561247898715312789999999875000-03-566666653265799999986
Q ss_pred C
Q ss_conf 3
Q 000286 481 A 481 (1720)
Q Consensus 481 ~ 481 (1720)
.
T Consensus 408 ~ 408 (529)
T d1jdha_ 408 R 408 (529)
T ss_dssp H
T ss_pred C
T ss_conf 6
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.8e-26 Score=178.91 Aligned_cols=344 Identities=17% Similarity=0.139 Sum_probs=249.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC-CCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 00093999998413999989999999999996306972011210-1461899999973-199688999999999984216
Q 000286 53 SVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV-HYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 53 ~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~iV-~~GaIp~Lv~kLL-~s~~~dL~Eqal~aL~nIS~~ 130 (1720)
...+.||.|+++|+++ +.+++..|+.+|.+++.... .+..++ ..|+|+.|+ ++| ...++++++.++++|.+|+.+
T Consensus 14 ~~~~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~-~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (529)
T d1jdha_ 14 LATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ---CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9997999999987299-99999999999999984557-7899987133999999-9984799999999999999999589
Q ss_pred CCC--HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 943--3534283267863101489489999999998720599986-2688728079999955069988999999999998
Q 000286 131 HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 207 (1720)
Q Consensus 131 ~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~-~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L 207 (1720)
... .+++.|+++.++.+|...+..++..|+|++.|+|...+.. ......+++|.|+.+|++.+.+++..+++++.++
T Consensus 91 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 170 (529)
T d1jdha_ 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 16699999879899999985797989999999999986513201136787658814899988705768888889999887
Q ss_pred HHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 73139997779999839917999995147999999888896699999999999831998999999982985999996329
Q 000286 208 AEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 208 ~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
+.. +.+....+...|.++.|+.++.+.+ ...++..+++++.+++.. ++....+++.|+++.|..++..
T Consensus 171 ~~~---~~~~~~~~~~~~~~~~L~~ll~~~~--------~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~ 238 (529)
T d1jdha_ 171 AYG---NQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD 238 (529)
T ss_dssp HTT---CHHHHHHHHHTTHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTS
T ss_pred HHH---HHHHHHHHHHCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 630---0478888876056368999998610--------489999999987511013-3233045654333469998625
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99556543453468997789999997403179998898888866411015875447999989987888888510356787
Q 000286 288 SGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREK 367 (1720)
Q Consensus 288 ~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 367 (1720)
... +....++..+..+-..... ..
T Consensus 239 ~~~--------------~~~~~a~~~l~~ls~~~~~------------------------------------~~------ 262 (529)
T d1jdha_ 239 PSQ--------------RLVQNCLWTLRNLSDAATK------------------------------------QE------ 262 (529)
T ss_dssp SCH--------------HHHHHHHHHHHHHHTTCTT------------------------------------CS------
T ss_pred CCH--------------HHHHHHHHHHHHCCCCCCC------------------------------------HH------
T ss_conf 401--------------5553015677750432110------------------------------------25------
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCC-CCHHHH
Q ss_conf 6104979999999878999999871148978999999999998304899999996300235789998850479-832876
Q 000286 368 LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-PHVLIP 446 (1720)
Q Consensus 368 ~~~~~pe~~~~f~~~llp~L~~vy~ss~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d-~~lv~~ 446 (1720)
.. ..++|.|++... +.+..++..++.++.++++. +++....+.+...+..++..+....+ +.+...
T Consensus 263 ---~~--------~~~i~~Lv~ll~-~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~ 329 (529)
T d1jdha_ 263 ---GM--------EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp ---CC--------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HH--------HHCCHHHHHHCC-CCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf ---66--------401014454124-54288999999988750122-037888888750078999999840011137889
Q ss_pred HHHHHHHHHHHCC--HHHHHHHHHHCHHHHHHHHHH
Q ss_conf 9999999995170--246566786368999999772
Q 000286 447 SLQIAEILMEKLP--GTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 447 aL~i~~~Ll~K~p--d~f~~~f~REGV~~~i~~L~~ 480 (1720)
|+.+...|....+ +.....+...|.+..+-.+..
T Consensus 330 a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~ 365 (529)
T d1jdha_ 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 998850022000000035666776456124789871
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.9e-20 Score=140.33 Aligned_cols=353 Identities=14% Similarity=0.170 Sum_probs=219.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC--
Q ss_conf 939999984139999899999999999963069720112101461899999973199688999999999984216943--
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-- 133 (1720)
Q Consensus 56 glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~-- 133 (1720)
..||.||++|+++ ++++|..|+++|.|+|..+++.+..+++.|+||.|+ +|+.+++.+++++|+++|.||+.+++.
T Consensus 2 ~~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 2 LTIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLV-DLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CCHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHH-HHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9789999985799-999999999999999849999999999888599999-98779998999999999999974998889
Q ss_pred -HHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHH----------------CCCCHH
Q ss_conf -35342832678631014-894899999999987205999862688728079999955----------------069988
Q 000286 134 -ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL----------------QYHDAK 195 (1720)
Q Consensus 134 -~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~i~~~ip~L~~lL----------------~~~D~~ 195 (1720)
.+.+.|+++.++.++.. .+..++..|+|++.|++....... ......++.+...+ ...+..
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHH
T ss_conf 9999879828999998433738899999999999986413578-888601078899987532211000035530214499
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH-HHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999873139997779999-83991799999514799999988889669999999999983199899999998
Q 000286 196 VLEHASVCLTRIAEAFASSPDKLDEL-CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH 274 (1720)
Q Consensus 196 V~e~A~~aLs~L~~~~~~~~~~l~~l-i~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~ 274 (1720)
+++.+++++.+++. .++..... ...|+++.+++++...... ..........++..+...... +.
T Consensus 159 v~~~a~~~l~~~~~----~~~~~~~~~~~~~~i~~l~~ll~~~~~~---~~~~~~~~~~~~~~l~~~~~~--------~~ 223 (457)
T d1xm9a1 159 VFFNATGCLRNLSS----ADAGRQTMRNYSGLIDSLMAYVQNCVAA---SRCDDKSVENCMCVLHNLSYR--------LD 223 (457)
T ss_dssp HHHHHHHHHHHHTT----SHHHHHHHTTSTTHHHHHHHHHHHHHHH---TCTTCTTHHHHHHHHHHHTTT--------HH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHCCHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHH--------HH
T ss_conf 99999999998736----8667899998703279999987241254---445889999999877512355--------67
Q ss_pred CCCHHHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 298599999632999556-5434534689977899999974031799988988888664110158754479999899878
Q 000286 275 LGISGILKDILSGSGVSA-NSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQD 353 (1720)
Q Consensus 275 ~gil~~L~~LL~~~~~~~-~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~ 353 (1720)
......+..+........ .................... ...+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------------------- 270 (457)
T d1xm9a1 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY--DCPLPEEE------------------------------- 270 (457)
T ss_dssp HHSCCHHHHHHHTC------------------------------CCCCC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-------------------------------
T ss_conf 888889999876442235578765420001278888887--64667753-------------------------------
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH---HHHHHHHHCCCHH
Q ss_conf 88888510356787610497999999-9878999999871148978999999999998304899---9999963002357
Q 000286 354 DTNGNASEVSAREKLLSDQPELLQQF-GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA---EMIQSLLSVTNIS 429 (1720)
Q Consensus 354 ~~~~~~~~~~~r~~~~~~~pe~~~~f-~~~llp~L~~vy~ss~~~~VR~~~L~~l~riv~~~~~---~~L~~~l~~~~~s 429 (1720)
..+.....+ ....++.|+..+..+.+..++..+..++.++...... ...+..+....+.
T Consensus 271 -----------------~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 333 (457)
T d1xm9a1 271 -----------------TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGL 333 (457)
T ss_dssp -----------------SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCH
T ss_pred -----------------HHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCH
T ss_conf -----------------316777899860479999998733663578899999988886144000488999999983976
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 8999885047983287699999999951702465667863689999997
Q 000286 430 SFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQL 478 (1720)
Q Consensus 430 s~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~i~~L 478 (1720)
..|..++.+.++.+...++.+...|... +. ....+.++|+..-+..|
T Consensus 334 ~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~-~~~~i~~~~i~~li~~L 380 (457)
T d1xm9a1 334 PQIARLLQSGNSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLL 380 (457)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHC-HH-HHHHHHHHHHHHHHHHH
T ss_conf 8897540375089999999999998607-66-79999996599999998
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.8e-20 Score=141.22 Aligned_cols=177 Identities=16% Similarity=0.037 Sum_probs=138.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 39999998212999999999999999998269985522110009399999841399998999999999999630697201
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~ 92 (1720)
-+|.||+.|++. |+.+|..|+..|+++.. .+++....+...|.||.|+++|+++ +++++..|++||.||+..+++..
T Consensus 3 ~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 789999985799-99999999999999984-9999999999888599999987799-98999999999999974998889
Q ss_pred HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-HHHHCCCHHHHHHHH----------------CCCCHHH
Q ss_conf 12101461899999973199688999999999984216943-353428326786310----------------1489489
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYL----------------DFFSTGV 155 (1720)
Q Consensus 93 ~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lL----------------d~~~~~v 155 (1720)
..+++.|+|+.|+..+....+.++++.++++|.+++..... ......+++.++..+ +.....+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHH
T ss_conf 99998798289999984337388999999999999864135788886010788999875322110000355302144999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHH-HHCCHHHHHHHHCCC
Q ss_conf 9999999987205999862688-728079999955069
Q 000286 156 QRVALSTAANMCKKLPSDAADF-VMEAVPLLTNLLQYH 192 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~~~~~-i~~~ip~L~~lL~~~ 192 (1720)
++.+++++.+++...+...... ..++++.|..++++.
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~ 197 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 99999999987368667899998703279999987241
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-20 Score=142.08 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHH
Q ss_conf 9899999999999963069720112101461899999973199688999999999984216943---3534283267863
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLS 146 (1720)
Q Consensus 70 ~~eiq~~AaraL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~ 146 (1720)
+.+.+..|+.+|.++++. .+.+..++..|++++|+..++.+++.+++.+|+++|++++.+++. .+++.|+++.++.
T Consensus 30 ~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 30 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999999999769-7889999986999999999837999999999999999999888888899997276379999
Q ss_pred HHCC-CCHHHHHHHHHHHHHHCCCCCCCH-HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 1014-894899999999987205999862-68872807999995506998899999999999873139997779999839
Q 000286 147 YLDF-FSTGVQRVALSTAANMCKKLPSDA-ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1720)
Q Consensus 147 lLd~-~~~~vqr~Al~aLsNlc~~~~~~~-~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~ 224 (1720)
+++. .+..+++.++|+++++|++.+... .....++++.|..+|.+.|.+++..++++|.+++.. +++....+++.
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~ 185 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHKGTLCSM 185 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_conf 960499899999999999987424402678998720126889988058657889999999998744---57788888876
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 917999995147999999888896699999999999831998999999982
Q 000286 225 GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL 275 (1720)
Q Consensus 225 gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~ 275 (1720)
|+++.|+.+|.+. +..++..++++|.+|+..++.........
T Consensus 186 ~~v~~L~~lL~~~---------~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 186 GMVQQLVALVRTE---------HSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp THHHHHHHHHTSC---------CSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred HHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 4689999997399---------98999999999999986488999999874
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6e-20 Score=139.14 Aligned_cols=219 Identities=17% Similarity=0.187 Sum_probs=175.9
Q ss_pred CHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHCCCCCHHHHHHHHH
Q ss_conf 0399999982129-----------999999999999999982699855221100093999998-4139999899999999
Q 000286 12 GRLKKILSGLRAD-----------GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG-LLNHESNPDIMLLAAR 79 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~-----------~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~-lL~~~~~~eiq~~Aar 79 (1720)
.+++..+.-|... .|...+..|+..|.+++... +....+...|.++.|+. ++.++ +++++..|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~--d~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~ 81 (264)
T d1xqra1 5 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQ 81 (264)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCH--HHHHHHHHCCCHHHHHHHHHCCC-CHHHHHHHHH
T ss_conf 99999999865468631777650799999999999999997697--88999998699999999983799-9999999999
Q ss_pred HHHHHHCCCCCCHHHHCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCCCHHH
Q ss_conf 9999630697201121014618999999731-99688999999999984216943---3534283267863101489489
Q 000286 80 ALTHLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGV 155 (1720)
Q Consensus 80 aL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~-s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~v 155 (1720)
+|++++..++.....++..|+||.|+ +++. ..+..+++.++|+|.+|+++++. .+...||++.++.++...+..+
T Consensus 82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv-~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~ 160 (264)
T d1xqra1 82 LIGTCSQNVAAIQEQVLGLGALRKLL-RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 160 (264)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999988888889999727637999-99604998999999999999874244026789987201268899880586578
Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC-----CHHH
Q ss_conf 99999999872059998-62688728079999955069988999999999998731399977799998399-----1799
Q 000286 156 QRVALSTAANMCKKLPS-DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG-----LVTQ 229 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~-~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~g-----li~~ 229 (1720)
++.++|++.|+|...+. .......+++|.|+.+|.++|.++++.++++|.+|+.. .++....+...+ ++..
T Consensus 161 ~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~---~~~~~~~~~~~~l~~~~~L~~ 237 (264)
T d1xqra1 161 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD---FPQGVRECREPELGLEELLRH 237 (264)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT---CHHHHHHHHCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999998744577888888764689999997399989999999999999864---889999998744459999999
Q ss_pred HHHHHCCC
Q ss_conf 99951479
Q 000286 230 AATLISTS 237 (1720)
Q Consensus 230 Lv~LL~~~ 237 (1720)
+.+++...
T Consensus 238 ~~~~~~~~ 245 (264)
T d1xqra1 238 RCQLLQQH 245 (264)
T ss_dssp HHHHHTTC
T ss_pred HHHHCCCH
T ss_conf 99763115
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.5e-11 Score=82.37 Aligned_cols=244 Identities=16% Similarity=0.143 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 203999999821299999999999999999826-99855221100093999998413999989999999999996306--
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSI-GTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV-- 87 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~-~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~-- 87 (1720)
--.+..|++.|+++ |+..++.|++.|+.+... +.+. ....++|.|.+++.++ .+++..++..|.++...
T Consensus 9 ~~~i~~l~~~l~~~-~~~~R~~a~~~l~~ia~~lg~~~-----~~~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~ 80 (588)
T d1b3ua_ 9 LYPIAVLIDELRNE-DVQLRLNSIKKLSTIALALGVER-----TRSELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp SHHHHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCHHH-----HHHTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCC
T ss_conf 26899999986699-98999999999999999849174-----5999999999986586--8999999999999998748
Q ss_pred CCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 97201121014618999999731996889999999999842169433534283267863101489489999999998720
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 88 ~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.+++.. ..+|.|. .++..++..++++|+.+|..|+.......+..-.++.+..+.+......+..|+..+..+.
T Consensus 81 ~~~~~~-----~ll~~l~-~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~ 154 (588)
T d1b3ua_ 81 GPEYVH-----CLLPPLE-SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCY 154 (588)
T ss_dssp SGGGGG-----GGHHHHH-HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHT
T ss_pred CHHHHH-----HHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 746899-----9999999-9806998899999999999999867988899999999999864631479999999999999
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 59998626887280799999550699889999999999987313999777999983991799999514799999988889
Q 000286 168 KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 168 ~~~~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls 247 (1720)
..... ......++.+..++++.++.|+..++.++..++..+ ..+. ....+++.+.+++... +
T Consensus 155 ~~~~~---~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~--~~~~----~~~~l~~~l~~l~~d~---------~ 216 (588)
T d1b3ua_ 155 PRVSS---AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--ELDN----VKSEIIPMFSNLASDE---------Q 216 (588)
T ss_dssp TTSCH---HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CHHH----HHHTHHHHHHHHHTCS---------C
T ss_pred HHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--CHHH----HHHHHHHHHHHHHCCC---------C
T ss_conf 98618---999999999999851699899999999999899871--5787----7999999999974488---------5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 669999999999983199899999998298599999632999
Q 000286 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 248 ~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
..++..++.++..++...+.. -....+++.+..++....
T Consensus 217 ~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~ 255 (588)
T d1b3ua_ 217 DSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKS 255 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCCCCC
T ss_conf 246789998887763058889---999999999997202356
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-11 Score=86.01 Aligned_cols=243 Identities=15% Similarity=0.109 Sum_probs=164.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99999821299999999999999999826998552211000939999984139999899999999999963069720112
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~ 94 (1720)
+-|.+.+ .+ +...+..++.+|.++...-. ..-....+++.|..++.++ ++.++..|+.+|..++...+..
T Consensus 52 p~l~~~~-~~-~~ev~~~~~~~l~~~~~~~~----~~~~~~~ll~~l~~l~~~~-~~~Vr~~a~~~l~~i~~~~~~~--- 121 (588)
T d1b3ua_ 52 PFLTDTI-YD-EDEVLLALAEQLGTFTTLVG----GPEYVHCLLPPLESLATVE-ETVVRDKAVESLRAISHEHSPS--- 121 (588)
T ss_dssp HHHHHTC-CC-CHHHHHHHHHHHTTCSGGGT----SGGGGGGGHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCHH---
T ss_pred HHHHHHH-CC-CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHH---
T ss_conf 9999986-58-68999999999999998748----7468999999999980699-8899999999999999867988---
Q ss_pred HCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 10146189999997319968899999999998421694335342832678631014894899999999987205999862
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174 (1720)
Q Consensus 95 iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~ 174 (1720)
.+..-.+| ++.+|...+....+..|+..+..+.......+. ...++.+.+++...+..+++.++.++..++......
T Consensus 122 ~~~~~l~p-~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~-~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~- 198 (588)
T d1b3ua_ 122 DLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD- 198 (588)
T ss_dssp HHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH-HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH-
T ss_conf 89999999-999986463147999999999999998618999-999999999851699899999999999899871578-
Q ss_pred HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 68872807999995506998899999999999873139997779999839917999995147999999888896699999
Q 000286 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 254 (1720)
Q Consensus 175 ~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~a 254 (1720)
......+|.|..+++.++..|+..++.++..++..+ ..+..... +++.+.+++... +..++..+
T Consensus 199 -~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~~~~~~~----i~~~l~~~~~D~---------~~~Vr~~~ 262 (588)
T d1b3ua_ 199 -NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQEDLEAL----VMPTLRQAAEDK---------SWRVRYMV 262 (588)
T ss_dssp -HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CHHHHHHH----THHHHHHHHTCS---------SHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHH----HHHHHHHHCCCC---------CHHHHHHH
T ss_conf -779999999999744885246789998887763058--88999999----999999720235---------68888999
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99999983199899999998298599999632999
Q 000286 255 IRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 255 l~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+.+|+.++..- ........+++.+..++....
T Consensus 263 ~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~ 294 (588)
T d1b3ua_ 263 ADKFTELQKAV---GPEITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HHTHHHHHHHH---CHHHHHHTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC
T ss_conf 98578888776---653434441689999872133
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.2e-12 Score=87.73 Aligned_cols=378 Identities=16% Similarity=0.120 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 20399999982129999999999999999982699855221100093999998413999989999999999996306972
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~ 90 (1720)
+-.+..|++.+++. |++.+++|+..|.+.|.... ..+..-....+++.|+++|.+. ++++|..|+.||.-+....++
T Consensus 2 ~~~~~~ll~k~~~~-D~d~R~ma~~dl~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~ 78 (1207)
T d1u6gc_ 2 SYHISNLLEKMTSS-DKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE 78 (1207)
T ss_dssp CHHHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH
T ss_pred CHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCH
T ss_conf 61699999866798-87299999999999872301-4457688999999999996799-879999999999999976768
Q ss_pred CHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH----HHH----CCCHHHHHHHHC-CCCHHHHHHHHH
Q ss_conf 01121014618999999731996889999999999842169433----534----283267863101-489489999999
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA----CLR----AGALMAVLSYLD-FFSTGVQRVALS 161 (1720)
Q Consensus 91 ~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~----Il~----~GgL~~LL~lLd-~~~~~vqr~Al~ 161 (1720)
.. + ...++.|+ ..+......++..+..+|..+...-+.. -+. ...+..+...+. .....++..|+-
T Consensus 79 ~~--~--~~l~~~L~-~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~ 153 (1207)
T d1u6gc_ 79 YQ--V--ETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 153 (1207)
T ss_dssp HH--H--HHHHHHHH-HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HH--H--HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 66--9--99999999-9856896326599999999999966320023112788999999999876347777899999999
Q ss_pred HHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 99872059998626887280799999550699889999999999987313999777999983991799999514799999
Q 000286 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~ 241 (1720)
++..+....+..-......+++.|...|.+.+..|+..|+.|++.++..+ ..+.. ..+++.+++.+....
T Consensus 154 ~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~--~~~~~-----~~~~~~ll~~l~~~~--- 223 (1207)
T d1u6gc_ 154 IMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC--GNIVF-----VDLIEHLLSELSKND--- 223 (1207)
T ss_dssp HHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-----TTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHCCCC---
T ss_conf 99999987567668779999999998808999899999999999999877--99879-----999999999870599---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC----CCCCCC----CCHHHHHHHHHH
Q ss_conf 988889669999999999983199899999998298599999632999556543----453468----997789999997
Q 000286 242 GQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA----VPPALS----RPAEQIFEIVNL 313 (1720)
Q Consensus 242 ~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~----~s~i~~----~~~~qi~~vi~l 313 (1720)
+......++.+++.++...+...... -..+++.+...+.......... ...++. .-...+..++..
T Consensus 224 -----~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~ 297 (1207)
T d1u6gc_ 224 -----SMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 297 (1207)
T ss_dssp -----SSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf -----88999999999999998761546777-999999999882586177789999999999986746544559999999
Q ss_pred HHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 4031799988988888664-110158754479999899878888885103----56787610497999999987899999
Q 000286 314 ANELLPPLPQGTISLPSSS-NMFVKGPVVRKSPASSSGKQDDTNGNASEV----SAREKLLSDQPELLQQFGMDLLPVLI 388 (1720)
Q Consensus 314 i~~LLP~L~~~~~s~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~pe~~~~f~~~llp~L~ 388 (1720)
....+..-++-........ ..................-.......+... ..-..++...|+.+..+...++|.|+
T Consensus 298 ~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~ 377 (1207)
T d1u6gc_ 298 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377 (1207)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987407300034678877655540110135667888752201338999999999986898889999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9871148978999999999998304
Q 000286 389 QIYGSSVNSPVRHKCLSVIGKLMYF 413 (1720)
Q Consensus 389 ~vy~ss~~~~VR~~~L~~l~riv~~ 413 (1720)
..+... +..||..++.++..++..
T Consensus 378 ~~l~d~-~~~vr~~~~~~l~~l~~~ 401 (1207)
T d1u6gc_ 378 SRFKER-EENVKADVFHAYLSLLKQ 401 (1207)
T ss_dssp STTSCS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 984598-548999999999999973
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.1e-11 Score=82.55 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH-------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899999973199688999999999984216943353-------4283267863101489489999999998720599986
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL-------RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 101 Ip~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il-------~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~ 173 (1720)
+|.|+ .++.+++.+.++.++.+|++|+.+....+- -...++.+++.+.+.+..++..|+.++..+....+..
T Consensus 128 l~~L~-~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~ 206 (888)
T d1qbkb_ 128 LPKLC-SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 206 (888)
T ss_dssp STTTT-TSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCST
T ss_pred HHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-98679998999999999999999868876077888799999999999863888899999999877788740388
Q ss_pred HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2688728079999955069988999999999998731
Q 000286 174 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 174 ~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
-.......++.|..++..++.+++..+|.|+..++..
T Consensus 207 ~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 243 (888)
T d1qbkb_ 207 LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEV 243 (888)
T ss_dssp TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999888760793067799999999989987
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=9e-10 Score=75.23 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCC
Q ss_conf 03999999821299--999999999999999826998552211000939999984139--99989999999999996306
Q 000286 12 GRLKKILSGLRADG--EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--ESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~--D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~--~~~~eiq~~AaraL~NL~~~ 87 (1720)
..+++|+..|+... |..+|.+|-..|.+. ... . ++...|..++.. ..+..++..|+-.|.|....
T Consensus 8 ~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~-~~~-p---------~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~ 76 (888)
T d1qbkb_ 8 QGLQQILQLLKESQSPDTTIQRTVQQKLEQL-NQY-P---------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA 76 (888)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHTTSTTTS-TTS-T---------TTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHC-C---------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999976397999999999999997-739-9---------8999999999745799989999999999999987
Q ss_pred CCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 97201121014618999999731996889999999999842169433534283267863101489489999999998720
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 88 ~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.-.....-....+-..++ +.+..+...++.++..++..|+......- =-..++.+++.++..+..++..|+.++..+|
T Consensus 77 ~w~~~~~~~~~~Ik~~ll-~~l~~~~~~vr~~~~~~i~~i~~~~~~~~-Wpell~~L~~~l~s~~~~~~~~al~~L~~i~ 154 (888)
T d1qbkb_ 77 HFQNFPNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 154 (888)
T ss_dssp HTTCSTTTCCHHHHHHHT-TGGGCCCSSTTTTTTTTTHHHHTTTSSCS-STTTSTTTTTSSTGGGSSCSSSSSTTTHHHH
T ss_pred HHCCCCHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 002399999999999999-99829988999999999999998718211-2999999999867999899999999999999
Q ss_pred CCCCC----C-HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 59998----6-268872807999995506998899999999999873
Q 000286 168 KKLPS----D-AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 168 ~~~~~----~-~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..... . .......++|.+...+.+++..++..|+.|+..++.
T Consensus 155 e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~ 201 (888)
T d1qbkb_ 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 201 (888)
T ss_dssp GGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 98688760778887999999999998638888999999998777887
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1.7e-08 Score=67.17 Aligned_cols=231 Identities=15% Similarity=0.086 Sum_probs=129.9
Q ss_pred CCHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCC
Q ss_conf 2039999998-2129999999999999999982699855221100093999998413999-9899999999999963069
Q 000286 11 SGRLKKILSG-LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 11 ~~~l~~Ll~~-L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~-~~eiq~~AaraL~NL~~~~ 88 (1720)
.+.+.+++.. +.+. |+.++.+|-..|.++... + ..+++..|.+++.++. +.+++..|+-.|.|.....
T Consensus 3 ~~~~~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~ 72 (861)
T d2bpta1 3 TAEFAQLLENSILSP-DQNIRLTSETQLKKLSND--N-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHH--C-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 899999999985598-999999999999998744--7-------168999999999769999899999999999985114
Q ss_pred CCCHHH--------HCC----CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCHHHHCCCHHHHHHHHCCCC-HH
Q ss_conf 720112--------101----461899999973199688999999999984216-9433534283267863101489-48
Q 000286 89 PSSCAA--------VVH----YGAVTCFVARLLTIEYMDLAEQSLQALKKISQE-HPTACLRAGALMAVLSYLDFFS-TG 154 (1720)
Q Consensus 89 ~~~~~~--------iV~----~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~-~~~~Il~~GgL~~LL~lLd~~~-~~ 154 (1720)
...... .+. ...-..++ ..+..+...++.++..+++.|+.. .+..-. ...++.+++.+...+ ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w-peli~~L~~~~~s~~~~~ 150 (861)
T d2bpta1 73 DSVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAW-PELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-HHHHHHHHHHTSTTSCHH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCHH
T ss_conf 50223567766673299999999999999-9883998899999999999999976776763-889999999856999589
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHH---HCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHCCCHH
Q ss_conf 999999999872059998626887---280799999550--69988999999999998731399977799-998399179
Q 000286 155 VQRVALSTAANMCKKLPSDAADFV---MEAVPLLTNLLQ--YHDAKVLEHASVCLTRIAEAFASSPDKLD-ELCNHGLVT 228 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~~~~~i---~~~ip~L~~lL~--~~D~~V~e~A~~aLs~L~~~~~~~~~~l~-~li~~gli~ 228 (1720)
.+..|+.++..+|........... ...++.+...+. ..+..++..++.|+.++...+ ..... ......+++
T Consensus 151 ~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~ 227 (861)
T d2bpta1 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNNMEREGERNYLMQ 227 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 99999999999998834778888988999999999987333478999999999999999987---676776665447777
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9999514799999988889669999999999983199
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s 265 (1720)
.+...+... +..++..++.++..++...
T Consensus 228 ~l~~~~~~~---------~~~~~~~~~~~l~~i~~~~ 255 (861)
T d2bpta1 228 VVCEATQAE---------DIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp HHHHHHTCS---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---------CHHHHHHHHHHHHHHHHHH
T ss_conf 679885699---------8999999999999998877
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.2e-08 Score=68.21 Aligned_cols=231 Identities=12% Similarity=0.140 Sum_probs=132.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99999982129999999999999999982699855221100093999998413999989999999999996306972011
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~ 93 (1720)
++.++..|... ++.+|-.|+.+|..+.....++ ....+++.|+..|..+ +.+.+..++.+|..+....+....
T Consensus 47 ~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~~-----~~~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~ 119 (1207)
T d1u6gc_ 47 VKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEY-----QVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASS 119 (1207)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCHH-----HHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999996799-8799999999999999767686-----6999999999985689-632659999999999996632002
Q ss_pred H-----HCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH--HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 2-----10146189999997319968899999999998421694335--3428326786310148948999999999872
Q 000286 94 A-----VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC--LRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 94 ~-----iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~I--l~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
. .+....++.|+..+.......++..|+.+|..+....+..+ .....+..++..+.+....+++.|+.+++.+
T Consensus 120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l 199 (1207)
T d1u6gc_ 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 199 (1207)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 31127889999999998763477778999999999999998756766877999999999880899989999999999999
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 05999862688728079999955-06998899999999999873139997779999839917999995147999999888
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~~~~~~~~i~~~ip~L~~lL-~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ 245 (1720)
+...+... ....++.+...+ .+....+...++.+++.|+.. .+..+...+ ..+++.+...+...
T Consensus 200 ~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~l-~~i~~~l~~~l~~~-------- 264 (1207)
T d1u6gc_ 200 VMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ---AGHRIGEYL-EKIIPLVVKFCNVD-------- 264 (1207)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH---SSGGGTTSC-TTHHHHHHHHHSSC--------
T ss_pred HHHCCHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHH-HHHHHHHHHHHCCC--------
T ss_conf 98779987---9999999999870599889999999999999987---615467779-99999999882586--------
Q ss_pred CCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8966999999999998319989
Q 000286 246 LSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 246 ls~~i~~~al~~L~nLas~s~~ 267 (1720)
+..++..++.++..++...+.
T Consensus 265 -~~~~r~~al~~l~~l~~~~~~ 285 (1207)
T d1u6gc_ 265 -DDELREYCIQAFESFVRRCPK 285 (1207)
T ss_dssp -CTTTHHHHHHHHHHHHHCTTC
T ss_pred -CHHHHHHHHHHHHHHHHHCHH
T ss_conf -177789999999999986746
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=2.1e-07 Score=60.30 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=144.5
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCC--------CCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 39999998212-99999999999999999826998552--------2110---009399999841399998999999999
Q 000286 13 RLKKILSGLRA-DGEEGKQVEALTQLCEMLSIGTEESL--------STFS---VDSFAPVLVGLLNHESNPDIMLLAARA 80 (1720)
Q Consensus 13 ~l~~Ll~~L~s-~~D~~~ql~Al~~L~~lL~~~~~~~l--------~~i~---~~glVp~Lv~lL~~~~~~eiq~~Aara 80 (1720)
-+..|+.-+.+ +.+...+..|+..|++.+........ ..+. ...+-..+++.|.++ ++.++..++.+
T Consensus 40 ~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~ 118 (861)
T d2bpta1 40 FAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQL 118 (861)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 99999999976999989999999999998511450223567766673299999999999999988399-88999999999
Q ss_pred HHHHHCCC-CC-CHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHH--CCCHHHHHHHHC--CC
Q ss_conf 99963069-72-0112101461899999973199688999999999984216943---3534--283267863101--48
Q 000286 81 LTHLCDVL-PS-SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLR--AGALMAVLSYLD--FF 151 (1720)
Q Consensus 81 L~NL~~~~-~~-~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~--~GgL~~LL~lLd--~~ 151 (1720)
++.++... |+ .+. ..++.|++.+.......+++.++.+|..|+..... .++. ...+..+++.+. ..
T Consensus 119 i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~ 193 (861)
T d2bpta1 119 IAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTET 193 (861)
T ss_dssp HHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHCCCCCHH-----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999767767638-----899999998569995899999999999999883477888898899999999998733347
Q ss_pred CHHHHHHHHHHHHHHCCCCCC--CHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH
Q ss_conf 948999999999872059998--626887280799999550699889999999999987313999777999983991799
Q 000286 152 STGVQRVALSTAANMCKKLPS--DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~--~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~ 229 (1720)
+..++..|+.++.+++...+. ........+++.|...+++.|.++...++.|+..++.. .++.+...+.. ++..
T Consensus 194 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~---~~~~~~~~l~~-~l~~ 269 (861)
T d2bpta1 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK---YYTFMKPYMEQ-ALYA 269 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH---HGGGCHHHHHH-THHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHH
T ss_conf 8999999999999999987676776665447777679885699899999999999999887---78999999998-9999
Q ss_pred HH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99-951479999998888966999999999998319
Q 000286 230 AA-TLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 230 Lv-~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~ 264 (1720)
+. ....+. +..+...++..+..++..
T Consensus 270 l~~~~~~~~---------~~~v~~~~~~~l~~l~~~ 296 (861)
T d2bpta1 270 LTIATMKSP---------NDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHTTCS---------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---------CHHHHHHHHHHHHHHHHH
T ss_conf 999873275---------499999999999999999
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=8.1e-08 Score=62.94 Aligned_cols=196 Identities=13% Similarity=0.071 Sum_probs=124.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 39999998212999999999999999998269985522110009399999841399998999999999999630697201
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~ 92 (1720)
..+.|+..|.+. |+.++..|+..|..+ ++ ...++.|+++++++ ++.++..|+++|..+..... .
T Consensus 20 ~~~~L~~~L~d~-~~~vR~~A~~~L~~~---~~---------~~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~~~--~ 83 (276)
T d1oyza_ 20 NDDELFRLLDDH-NSLKRISSARVLQLR---GG---------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKK--C 83 (276)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHH---CC---------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTT--T
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHH---CC---------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCC--C
T ss_conf 999999884699-999999999999861---88---------73999999998099-98999999999987202212--1
Q ss_pred HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12101461899999973199688999999999984216943353428326786310148948999999999872059998
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 93 ~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
...+++.|...++..++..++..++++|++++...+. .....++.+...+......+++.++.++..+..
T Consensus 84 ----~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~---- 153 (276)
T d1oyza_ 84 ----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 153 (276)
T ss_dssp ----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH----
T ss_conf ----2022999999986699766899999999987024621--018999999998647204899999998741023----
Q ss_pred CHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 62688728079999955069988999999999998731399977799998399179999951479999998888966999
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
...++.+..++...+..+...+.+++..+... ... .++.++..+... +..+..
T Consensus 154 ------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~---------~~~~~~ 206 (276)
T d1oyza_ 154 ------KATIPLLINLLKDPNGDVRNWAAFAININKYD---NSD---------IRDCFVEMLQDK---------NEEVRI 206 (276)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---CHH---------HHHHHHHHTTCS---------CHHHHH
T ss_pred ------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC---CCC---------CCHHHHHHHHHH---------HHHHHH
T ss_conf ------88999988740466401113577787765102---111---------331666641100---------001233
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q 000286 253 GLIRLLSTC 261 (1720)
Q Consensus 253 ~al~~L~nL 261 (1720)
.++.+++.+
T Consensus 207 ~~~~al~~~ 215 (276)
T d1oyza_ 207 EAIIGLSYR 215 (276)
T ss_dssp HHHHHHHHT
T ss_pred HHCCCCCHH
T ss_conf 320010000
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.6e-08 Score=67.45 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCC
Q ss_conf 99999982129999999999999999982699855221100093999998413999-9899999999999963069
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~-~~eiq~~AaraL~NL~~~~ 88 (1720)
+-+++.++.+. |..++.+|-..|-++.... ..+++..|..++.+.. ...++..|+-.|.|.....
T Consensus 2 l~~il~~~~s~-d~~~r~~A~~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~ 67 (458)
T d1ibrb_ 2 LITILEKTVSP-DRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK 67 (458)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 89899988594-9999999999999987528---------358999999998448999899999999999886326
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.8e-07 Score=56.43 Aligned_cols=386 Identities=12% Similarity=0.035 Sum_probs=184.1
Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCC----------CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999982129-999999999999999982699855----------2211000939999984139999899999999999
Q 000286 14 LKKILSGLRAD-GEEGKQVEALTQLCEMLSIGTEES----------LSTFSVDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1720)
Q Consensus 14 l~~Ll~~L~s~-~D~~~ql~Al~~L~~lL~~~~~~~----------l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~ 82 (1720)
+..|+.-|.+. .+..++..|+..|++.+....... +..-....+...|++.+..+. .. ...++.++.
T Consensus 36 ~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~~~ 113 (458)
T d1ibrb_ 36 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQCVA 113 (458)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHH
T ss_conf 9999999844899989999999999988632671111677641114999999999999986147982-89-999999999
Q ss_pred HHHCCCCCCHHHHCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCHH---HHCCCHHHHHHHHCC--CCHHHH
Q ss_conf 9630697201121014618999999731-9968899999999998421694335---342832678631014--894899
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTAC---LRAGALMAVLSYLDF--FSTGVQ 156 (1720)
Q Consensus 83 NL~~~~~~~~~~iV~~GaIp~Lv~kLL~-s~~~dL~Eqal~aL~nIS~~~~~~I---l~~GgL~~LL~lLd~--~~~~vq 156 (1720)
.++...- ..-.-.+.++.|++.+.. .....+++.++.+|+.++....... .....+..+++.+.. .+..++
T Consensus 114 ~i~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~ 190 (458)
T d1ibrb_ 114 GIACAEI---PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 190 (458)
T ss_dssp HHHHHHG---GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHHC---CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999867---8012751057899998820321778888998888987631410002338899999999861545679999
Q ss_pred HHHHHHHHHHCCCCCC--CHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999872059998--62688728079999955069988999999999998731399977799998399179999951
Q 000286 157 RVALSTAANMCKKLPS--DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~--~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL 234 (1720)
..|+.++.+++..... .........++.+..++.+.|.++...++.++..++.. .+..+...+..-+...+...+
T Consensus 191 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~---~~~~~~~~l~~~~~~~~~~~~ 267 (458)
T d1ibrb_ 191 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL---YYQYMETYMGPALFAITIEAM 267 (458)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---CGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998861324566777777676688772599899999999999999987---199999888778999999984
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 47999999888896699999999999831998999999982985999996329995565434534689977899999974
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLA 314 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li 314 (1720)
.+. ...+...++..+..++...... .+. ............... .......+..++..+
T Consensus 268 ~~~---------~~~~~~~a~~~l~~i~~~~~~~---~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l 325 (458)
T d1ibrb_ 268 KSD---------IDEVALQGIEFWSNVCDEEMDL---AIE---------ASEAAEQGRPPEHTS-KFYAKGALQYLVPIL 325 (458)
T ss_dssp HCS---------SHHHHHHHHHHHHHHHHHHHHH---HHH---------HCCTTCSSSCSSCCC-CCHHHHHHHHHHHHH
T ss_pred CCC---------CHHHHHHHHHHHHHHHHHHHHH---HHH---------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 354---------5999999999999989988999---985---------036787641899999-999998899872667
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 03179998898888866411015875447999989987888888510356787610497999999987899999987114
Q 000286 315 NELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS 394 (1720)
Q Consensus 315 ~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~ss 394 (1720)
...+....+...+ . + .+........-..+....++ .++..++|.+.+..++
T Consensus 326 ~~~~~~~~~~~~~----------------------~--~-~~~~~~a~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s- 376 (458)
T d1ibrb_ 326 TQTLTKQDENDDD----------------------D--D-WNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN- 376 (458)
T ss_dssp HHHTTCCCSSCCT----------------------T--C-CSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC-
T ss_pred HHHHHCCHHHHCC----------------------C--C-CCHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCC-
T ss_conf 7640001021011----------------------2--2-33999999999999875517---5566789999998569-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 897899999999999830489999999630023578999885047983287699999999951702
Q 000286 395 VNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG 460 (1720)
Q Consensus 395 ~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd 460 (1720)
-+..+|+.++.++.-|+..+.++.+...+ ..+..+|...+...++.+...|+..+.-+.+.+|+
T Consensus 377 ~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~ 440 (458)
T d1ibrb_ 377 PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440 (458)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999999999754776789889--99999999884899899999999999999997201
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1e-06 Score=56.05 Aligned_cols=219 Identities=14% Similarity=0.066 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCC-------CCCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-C-CCHH
Q ss_conf 99999999999999982699855-------22110---00939999984139999899999999999963069-7-2011
Q 000286 26 EEGKQVEALTQLCEMLSIGTEES-------LSTFS---VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL-P-SSCA 93 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~-------l~~i~---~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~-~-~~~~ 93 (1720)
+..++..|+..|.+.+....... +..++ ...+...|++.|.+++ . +...+|.+++.++... | +.+
T Consensus 50 ~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~-~-~~~~~a~~i~~i~~~~~p~~~W- 126 (876)
T d1qgra_ 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-Y-RPSSASQCVAGIACAEIPVNQW- 126 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-S-SSCHHHHHHHHHHHHHGGGTCC-
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC-H-HHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 999999999999987530562001555303335999999999999999866970-8-8999999999999987773463-
Q ss_pred HHCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCHHH---HCCCHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf 2101461899999973199--688999999999984216943353---42832678631014--8948999999999872
Q 000286 94 AVVHYGAVTCFVARLLTIE--YMDLAEQSLQALKKISQEHPTACL---RAGALMAVLSYLDF--FSTGVQRVALSTAANM 166 (1720)
Q Consensus 94 ~iV~~GaIp~Lv~kLL~s~--~~dL~Eqal~aL~nIS~~~~~~Il---~~GgL~~LL~lLd~--~~~~vqr~Al~aLsNl 166 (1720)
.+.+|.|+ ..+.++ ...+++.++.+|..|+.+.....+ -...++.+++.+.. .+..++..|+.++.++
T Consensus 127 ----peli~~L~-~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~ 201 (876)
T d1qgra_ 127 ----PELIPQLV-ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp ----TTHHHHHH-HHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf ----89999999-9865999968999999999999998777887788899999999998717574579999999999878
Q ss_pred CCCCCCC--HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 0599986--26887280799999550699889999999999987313999777999983991799999514799999988
Q 000286 167 CKKLPSD--AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 167 c~~~~~~--~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~ 244 (1720)
....... .......++..+...+.+.|.++...+|.|+..++.. .++.....+...+...+...+...
T Consensus 202 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~l~~~~~~~~~~~------- 271 (876)
T d1qgra_ 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL---YYQYMETYMGPALFAITIEAMKSD------- 271 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---SGGGCHHHHTTTHHHHHHHHHTCS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCC-------
T ss_conf 8873101257789999999999982599889999999999999999---699988878879999999873453-------
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 88966999999999998319
Q 000286 245 SLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 245 ~ls~~i~~~al~~L~nLas~ 264 (1720)
...+...++..+..+|..
T Consensus 272 --~~~~~~~~~~~~~~i~~~ 289 (876)
T d1qgra_ 272 --IDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp --SHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHH
T ss_conf --389999999999998888
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=8.1e-06 Score=50.38 Aligned_cols=174 Identities=14% Similarity=0.053 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 09399999841399998999999999999630697201121014618999999731996889999999999842169433
Q 000286 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA 134 (1720)
Q Consensus 55 ~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~ 134 (1720)
......|+++|+++ ++.++..|+++|..+.. ..++|.|+ +++..++.+++..|+++|+.+.......
T Consensus 18 ~~~~~~L~~~L~d~-~~~vR~~A~~~L~~~~~-----------~~~~~~l~-~~l~d~~~~vr~~a~~aL~~l~~~~~~~ 84 (276)
T d1oyza_ 18 KLNDDELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCE 84 (276)
T ss_dssp TSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHH-HHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred CCCHHHHHHHHCCC-CHHHHHHHHHHHHHHCC-----------HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 27999999884699-99999999999986188-----------73999999-9980999899999999998720221212
Q ss_pred HHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 534283267863-1014894899999999987205999862688728079999955069988999999999998731399
Q 000286 135 CLRAGALMAVLS-YLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 135 Il~~GgL~~LL~-lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
...+..++. +++..+..++..|+.++.++|...+ ......++.+...+...+..+...++.++..+.+
T Consensus 85 ---~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~---- 153 (276)
T d1oyza_ 85 ---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 153 (276)
T ss_dssp ---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH----
T ss_conf ---02299999998669976689999999998702462----1018999999998647204899999998741023----
Q ss_pred CHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9777999983991799999514799999988889669999999999983199899999
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKT 271 (1720)
Q Consensus 214 ~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~ 271 (1720)
...++.+..++... +..+...+..++..+..........
T Consensus 154 ----------~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (276)
T d1oyza_ 154 ----------KATIPLLINLLKDP---------NGDVRNWAAFAININKYDNSDIRDC 192 (276)
T ss_dssp -----------CCHHHHHHHHTCS---------SHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred ----------HHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf ----------88999988740466---------4011135777877651021113316
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2e-05 Score=47.94 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=137.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999982129999999999999999982699855221100093999998413999-98999999999999630697201
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~-~~eiq~~AaraL~NL~~~~~~~~ 92 (1720)
+-+++....+. |...+.+|-..|.++... + ..+++..|.+++.+.. +.+++..|+-.|.|.....-+..
T Consensus 3 l~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~--~-------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~ 72 (876)
T d1qgra_ 3 LITILEKTVSP-DRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHC--C-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 89999988592-989999999999999860--7-------1579999999984489999999999999998753056200
Q ss_pred HH-----------HCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCHHHHCCCHHHHHHHHCCC--CHHHHHH
Q ss_conf 12-----------1014618999999731996889999999999842169-43353428326786310148--9489999
Q 000286 93 AA-----------VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH-PTACLRAGALMAVLSYLDFF--STGVQRV 158 (1720)
Q Consensus 93 ~~-----------iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~-~~~Il~~GgL~~LL~lLd~~--~~~vqr~ 158 (1720)
.. -........|+ .++.++. .++.+++.++..|++.. +..- =.+.++.+++.+... ...++..
T Consensus 73 ~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~-Wpeli~~L~~~l~~~~~~~~~~~~ 149 (876)
T d1qgra_ 73 KAQYQQRWLAIDANARREVKNYVL-HTLGTET-YRPSSASQCVAGIACAEIPVNQ-WPELIPQLVANVTNPNSTEHMKES 149 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCC-SSSCHHHHHHHHHHHHHGGGTC-CTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHH-HHHCCCC-HHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 155530333599999999999999-9866970-8899999999999998777346-389999999986599996899999
Q ss_pred HHHHHHHHCCCCCCCH-HHHHHCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHCCCHHHHHHHH
Q ss_conf 9999987205999862-688728079999955069--988999999999998731399977799-998399179999951
Q 000286 159 ALSTAANMCKKLPSDA-ADFVMEAVPLLTNLLQYH--DAKVLEHASVCLTRIAEAFASSPDKLD-ELCNHGLVTQAATLI 234 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~-~~~i~~~ip~L~~lL~~~--D~~V~e~A~~aLs~L~~~~~~~~~~l~-~li~~gli~~Lv~LL 234 (1720)
++.++..+|....... ......+++.+...+.+. +..+...++.++.+.... ...... .....-+++.+..++
T Consensus 150 ~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~---~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---TKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG---CHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998777887788899999999998717574579999999999878887---3101257789999999999982
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHC
Q ss_conf 4799999988889669999999999983199899999998298599999632
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
... +..++..++.+|..++...+......+...+...+...+.
T Consensus 227 ~~~---------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T d1qgra_ 227 QCP---------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp TCS---------SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred CCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 599---------8899999999999999996999888788799999998734
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.97 E-value=0.00038 Score=39.87 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 78999999871148978999999999998304
Q 000286 382 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 413 (1720)
Q Consensus 382 ~llp~L~~vy~ss~~~~VR~~~L~~l~riv~~ 413 (1720)
.+++.|+++...+.---|-|-++.++.+++..
T Consensus 268 ~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~ 299 (477)
T d1ho8a_ 268 SDFLDLLKLVKITIKEKVSRLCISIILQCCST 299 (477)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999988631778999999999998621
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.80 E-value=2.5e-06 Score=53.62 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=39.3
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 39999984139999899999999999963069720112101461899999973199688999999999984216943353
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 lVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il 136 (1720)
.++.|++.|.++ ++.++..|+++|.++.. ..++|.|. +++..++..++..|+++|+.|..
T Consensus 23 ~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~-----------~~~~~~L~-~~l~d~~~~VR~~a~~aL~~i~~------- 82 (111)
T d1te4a_ 23 AFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----------ERAVEPLI-KLLEDDSGFVRSGAARSLEQIGG------- 82 (111)
T ss_dssp THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----------HHHHHHHH-HHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHCCH-----------HHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCC-------
T ss_conf 999999997499-87899999999876101-----------23279987-33023033799999999998676-------
Q ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 428326786310148948999999999
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
...++.+..+++..+..+++.|+.+|
T Consensus 83 -~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 83 -ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -CCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf -11499999988299899999999998
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=0.00084 Score=37.72 Aligned_cols=356 Identities=13% Similarity=0.089 Sum_probs=164.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHH---HC-CCCCH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 939999984139999899999999999963069720112---10-14618-99999973199688999999999984216
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA---VV-HYGAV-TCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 56 glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~---iV-~~GaI-p~Lv~kLL~s~~~dL~Eqal~aL~nIS~~ 130 (1720)
..+..++++|......++.....-.+.-|....+..... .. +..-+ +.+. +++..++.=....+...+..++..
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~-~~l~~~d~~~~~~s~~i~~ll~~~ 152 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFD-VSLKGDFQTVLISGFNVVSLLVQN 152 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHH-HCSCSSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8999999998606717899999999999872373236789887637321367888-731576058999989999999845
Q ss_pred CCCHHHHCCCHHHHHHHH----CCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHCCHHHHHHHHCC-------------
Q ss_conf 943353428326786310----1489489999999998720599986268--872807999995506-------------
Q 000286 131 HPTACLRAGALMAVLSYL----DFFSTGVQRVALSTAANMCKKLPSDAAD--FVMEAVPLLTNLLQY------------- 191 (1720)
Q Consensus 131 ~~~~Il~~GgL~~LL~lL----d~~~~~vqr~Al~aLsNlc~~~~~~~~~--~i~~~ip~L~~lL~~------------- 191 (1720)
.....-....+..+..++ .......+-.|+.++..+.+..+..... .-...++.|..+|..
T Consensus 153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~ 232 (477)
T d1ho8a_ 153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 232 (477)
T ss_dssp TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCC
T ss_conf 65354347888775699998512132324899999999882675078999881322178899999987425654200003
Q ss_pred ----CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ----998899999999999873139997779999839--91799999514799999988889669999999999983199
Q 000286 192 ----HDAKVLEHASVCLTRIAEAFASSPDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 192 ----~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~--gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~s 265 (1720)
....++-.++.|+=-|.- +++....+... ++++.|++++.... ...+..-++.+|.|++...
T Consensus 233 ~~~~~~~Ql~Y~~ll~lWlLSF----~~~~~~~l~~~~~~~i~~l~~i~~~s~--------KEKvvRv~l~~l~Nll~~~ 300 (477)
T d1ho8a_ 233 NSNHLGIQLQYHSLLLIWLLTF----NPVFANELVQKYLSDFLDLLKLVKITI--------KEKVSRLCISIILQCCSTR 300 (477)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHHHHCC--------SHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 6888537999999999999975----897899987732678999999988631--------7789999999999986212
Q ss_pred H-----HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8-----99999998298599999632999556543453468997789999997403179998898888866411015875
Q 000286 266 P-----LCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPV 340 (1720)
Q Consensus 266 ~-----~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~ 340 (1720)
. .....++.+++++.+..|... .| +.+.+.+-++.+.+.|..-.+..-+..-|...+..|.+
T Consensus 301 ~~~~~~~~~~~~v~~~~l~~l~~L~~r-----~~--------~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L 367 (477)
T d1ho8a_ 301 VKQHKKVIKQLLLLGNALPTVQSLSER-----KY--------SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLL 367 (477)
T ss_dssp STTHHHHHHHHHHHHCHHHHHHHHHSS-----CC--------SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCC-----CC--------CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 223356789999971516899997439-----99--------97789999999999999988850759999999954987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHH
Q ss_conf 44799998998788888851035678761049799999998789999998711---------489789999999999983
Q 000286 341 VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGS---------SVNSPVRHKCLSVIGKLM 411 (1720)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~s---------s~~~~VR~~~L~~l~riv 411 (1720)
.+ +|. +++. .=+.++..| +-.++- .++..|+++..+ +.++.|=--++.-|.-.|
T Consensus 368 ~W-SP~----H~se--~FW~EN~~k--f~e~~~--------~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefv 430 (477)
T d1ho8a_ 368 CW-SPP----HVDN--GFWSDNIDE--FKKDNY--------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 430 (477)
T ss_dssp CC-CGG----GGCH--HHHHHHSGG--GSSGGG--------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCC----CCCH--HHHHHHHHH--HCCCCH--------HHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHH
T ss_conf 77-787----6772--589999986--241354--------899999999862044555545788233313350077999
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 048999999963002357899988504798328769999999995
Q 000286 412 YFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 412 ~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
-+.... +.++.....-..+..+++.+|+.+.-.||.++..||-
T Consensus 431 r~~P~g--r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 431 ELLPES--IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHCTTH--HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCH--HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 978533--6799882839999988649997999999999999998
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.57 E-value=0.00012 Score=43.00 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=48.5
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 18999999731996889999999999842169433534283267863101489489999999998720599986268872
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM 179 (1720)
Q Consensus 100 aIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~i~ 179 (1720)
+++.|+ +++..++..++..++++|+++.. ...++.++.+|.+.+..+++.|++++..+.. .
T Consensus 23 ~~~~L~-~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------~ 83 (111)
T d1te4a_ 23 AFEPLL-ESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------E 83 (111)
T ss_dssp THHHHH-HGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------H
T ss_pred HHHHHH-HHHCCCCHHHHHHHHHHHHHCCH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC----------C
T ss_conf 999999-99749987899999999876101--------2327998733023033799999999998676----------1
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8079999955069988999999999
Q 000286 180 EAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 180 ~~ip~L~~lL~~~D~~V~e~A~~aL 204 (1720)
.++|.|..++.++|..|+..|+.+|
T Consensus 84 ~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 84 RVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 1499999988299899999999998
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.031 Score=27.90 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHHC
Q ss_conf 0399999982129999999999999999982699855221100093999998413999-98999999999999630
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCD 86 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~-~~eiq~~AaraL~NL~~ 86 (1720)
..++.+.+.|...-++..+.+|-..|.++ .. ++ +++..|+.++.+.. ...++..|+-.|.|...
T Consensus 2 ~d~~~l~~ll~~s~~~~~~k~Ae~~L~~~-~~--~p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~ 66 (959)
T d1wa5c_ 2 SDLETVAKFLAESVIASTAKTSERNLRQL-ET--QD--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIK 66 (959)
T ss_dssp CHHHHHHHHHHHTTSGGGHHHHHHHHHHH-HT--ST--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHH-HC--CC--------CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 71999999998789968999999999997-70--99--------89999999983589999999999999999999
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.26 Score=22.09 Aligned_cols=141 Identities=9% Similarity=0.016 Sum_probs=85.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCC----
Q ss_conf 9999984139999899999999999963069720112101461899999973199--6889999999999842169----
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE--YMDLAEQSLQALKKISQEH---- 131 (1720)
Q Consensus 58 Vp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~~~iV~~GaIp~Lv~kLL~s~--~~dL~Eqal~aL~nIS~~~---- 131 (1720)
+..|.++|...-+++.+..|-.-|..+ +..| |-+..|+ .++... ...++..|+-.|.|....+
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~-~~~p---------~f~~~L~-~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~ 72 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQL-ETQD---------GFGLTLL-HVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHH-HTST---------THHHHHH-HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCC---------CHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999998789968999999999997-7099---------8999999-9983589999999999999999999855643
Q ss_pred -CC----HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf -43----3534283267863101489489999999998720599986268872807999995506998899999999999
Q 000286 132 -PT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 132 -~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~ 206 (1720)
.. .-.+...-..+++.|......++..++-+++.+++..-+.. =.+.+|.|...++++|......++.++..
T Consensus 73 ~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~---Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~ 149 (959)
T d1wa5c_ 73 NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR---WPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (959)
T ss_dssp SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT---CTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 445799999999999999999837969999999999999998768402---57999999998579999999999999999
Q ss_pred HHHHCC
Q ss_conf 873139
Q 000286 207 IAEAFA 212 (1720)
Q Consensus 207 L~~~~~ 212 (1720)
|+..+.
T Consensus 150 i~k~~~ 155 (959)
T d1wa5c_ 150 IFKRWR 155 (959)
T ss_dssp HHGGGT
T ss_pred HHHHHH
T ss_conf 999987
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.32 Score=21.49 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=131.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH----HHHCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 110009399999841399998999999999999630697201----12101-4618999999731996889999999999
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC----AAVVH-YGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1720)
Q Consensus 51 ~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~~~----~~iV~-~GaIp~Lv~kLL~s~~~dL~Eqal~aL~ 125 (1720)
.+...+++..|+..|..= +.|.+..++.+.+|+..-..... ..++. -.++..|+ +- .++.+++-.|-..|.
T Consensus 64 e~~~~d~l~~Li~~L~~L-~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~-~g--ye~~eiAl~~G~mLR 139 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLL-KG--YESPEIALNCGIMLR 139 (330)
T ss_dssp HHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHH-HG--GGSTTTHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHH-HH--CCCCCHHHHHHHHHH
T ss_conf 999858499999857779-97113229999999961678999860899883978999998-63--288603235659999
Q ss_pred HHHCCCC--CHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHH----HHCCHHHHHHHHCCCCHHHHHH
Q ss_conf 8421694--335342832678631014894899999999987205999862688----7280799999550699889999
Q 000286 126 KISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF----VMEAVPLLTNLLQYHDAKVLEH 199 (1720)
Q Consensus 126 nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~----i~~~ip~L~~lL~~~D~~V~e~ 199 (1720)
-+.+... ..|+....+-....|++..+-.+...|..++.-+....+...... ...++..+..+|.+++--...+
T Consensus 140 Ecik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq 219 (330)
T d1upka_ 140 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 219 (330)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99933999999973388999999973871588898999999999708899999999849999999999964884277998
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHH----HCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CHHHHHHH
Q ss_conf 99999998731399977799998----399179999951479999998888966999999999998319---98999999
Q 000286 200 ASVCLTRIAEAFASSPDKLDELC----NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG---SPLCAKTL 272 (1720)
Q Consensus 200 A~~aLs~L~~~~~~~~~~l~~li----~~gli~~Lv~LL~~~~~~~~~~~ls~~i~~~al~~L~nLas~---s~~~t~~L 272 (1720)
++..|+.|.- +..+...+. +..-+..++.||... +.+++..+..+.-..+.. ++.+...|
T Consensus 220 SlKLLgelLl----dr~N~~vm~~Yvs~~~nLkl~M~LLrd~---------sk~Iq~EAFhVFKvFVANpnKp~~I~~IL 286 (330)
T d1upka_ 220 SLKLLGELLL----DRHNFTIMTKYISKPENLKLMMNLLRDK---------SRNIQFEAFHVFKVFVANPNKTQPILDIL 286 (330)
T ss_dssp HHHHHHHHHH----SGGGHHHHHHHTTCHHHHHHHHHHTTCS---------CHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHCCHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 8999999986----5567999999967888899999982173---------13377986658553011899977999999
Q ss_pred HHCCCHHHHHHHHCC
Q ss_conf 982985999996329
Q 000286 273 LHLGISGILKDILSG 287 (1720)
Q Consensus 273 l~~gil~~L~~LL~~ 287 (1720)
+.+. +.|...|..
T Consensus 287 ~~Nr--~kLl~fl~~ 299 (330)
T d1upka_ 287 LKNQ--AKLIEFLSK 299 (330)
T ss_dssp HHTH--HHHHHHHHH
T ss_pred HHHH--HHHHHHHHH
T ss_conf 9839--999999986
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=83.00 E-value=0.41 Score=20.81 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=11.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999997319968899999999
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQA 123 (1720)
Q Consensus 101 Ip~Lv~kLL~s~~~dL~Eqal~a 123 (1720)
+..|. .|+..++.+|+..+++.
T Consensus 68 ~~~L~-~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 68 VEALT-PLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp GGGGG-GGTTCSSHHHHHHHHTT
T ss_pred HHHHH-HHHCCCCHHHHHHHHHH
T ss_conf 99999-88269898999999997
|