Citrus Sinensis ID: 000323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1669 | ||||||
| 255575080 | 1707 | hypothetical protein RCOM_0464910 [Ricin | 0.947 | 0.926 | 0.499 | 0.0 | |
| 357503097 | 1723 | hypothetical protein MTR_7g024000 [Medic | 0.931 | 0.901 | 0.404 | 0.0 | |
| 296086267 | 1570 | unnamed protein product [Vitis vinifera] | 0.541 | 0.575 | 0.522 | 0.0 | |
| 297823849 | 1566 | binding protein [Arabidopsis lyrata subs | 0.871 | 0.929 | 0.408 | 0.0 | |
| 240254612 | 1577 | uncharacterized protein [Arabidopsis tha | 0.868 | 0.918 | 0.395 | 0.0 | |
| 3355487 | 1567 | unknown protein [Arabidopsis thaliana] | 0.862 | 0.918 | 0.390 | 0.0 | |
| 359486637 | 2115 | PREDICTED: uncharacterized protein LOC10 | 0.401 | 0.316 | 0.621 | 0.0 | |
| 224100939 | 645 | predicted protein [Populus trichocarpa] | 0.354 | 0.916 | 0.603 | 0.0 | |
| 449483951 | 646 | PREDICTED: uncharacterized protein LOC10 | 0.381 | 0.984 | 0.533 | 0.0 | |
| 77556192 | 1696 | expressed protein [Oryza sativa Japonica | 0.678 | 0.667 | 0.358 | 0.0 |
| >gi|255575080|ref|XP_002528445.1| hypothetical protein RCOM_0464910 [Ricinus communis] gi|223532121|gb|EEF33928.1| hypothetical protein RCOM_0464910 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1492 bits (3862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1690 (49%), Positives = 1088/1690 (64%), Gaps = 108/1690 (6%)
Query: 13 TVDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTEDYRH 72
+VD+Q R + Q N+ KSFE+NRV KS GW G N NLVISFSDDD+GS++EDY+
Sbjct: 91 SVDVQSRLSLQPNNDKSFEKNRVPLKSANSGWHAPPGPNSNLVISFSDDDTGSESEDYKS 150
Query: 73 KTAFENKSNTTRVDGSGRPPTSS-AVKVKNLQQTARNVSKAIPKKLSPSRTL--TTTRNH 129
A E K T VD + RPP+S A K LQ TARNV+K +PKK S SRT TT+ +
Sbjct: 151 GKALEYKQKTAGVDSNQRPPSSLLAAKSNKLQLTARNVNKVMPKK-SLSRTFNSATTKIN 209
Query: 130 GGANSWVSRPPSVDQRSRVRNFSIKTK-LGSLECG-DQ-VGLRNSKLQDLRQQIALRESE 186
GGA+S + SVDQ SRVRNF+ + L + E G DQ +G+ N+KLQDLR QIALRE
Sbjct: 210 GGAHSRGAGSSSVDQISRVRNFNTTNRNLSNQEYGSDQGLGMNNAKLQDLRLQIALRERV 269
Query: 187 LKLKAAQQNKDLVIDSCENY-------HLGR-----------LDQKEPDKKRLKVSGSYS 228
LKLKAA QNK+ S +Y H R L+ KEPD KRLK+ GS
Sbjct: 270 LKLKAAHQNKESASVSGRDYSFVNLAAHATRTSNATSVRARELETKEPDNKRLKIMGST- 328
Query: 229 HRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVKWDKQNG 288
+L +D +Q+I A KST+P+KE +SL D + V R K P R ES IVK +Q
Sbjct: 329 -QLASDRQQEIHAVKSTIPLKEQALRSNSLLDRDMVHRGLKGSPTRRTESSIVKSKEQVD 387
Query: 289 KQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAER 348
K+V E++ S +K+ N N + Q+DR + +V L N+ SS LK
Sbjct: 388 KRVDTSSESLPSGLKEGVNVNVNRIQTDRCNMQVEP---------LTNIKSSVLLKYTNS 438
Query: 349 IE-SDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQ--VNTAS 405
+E + P + P SF + EQ++M E + I + G + N V Q ++ +
Sbjct: 439 VELNQPVKSGGHQPPGSFSKTTSGEQHLMSGGEDHEHILNGRRVGEALNKVCQASLDNGN 498
Query: 406 LGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRAL 465
N+ G NVS ++NVD+ SL++MEE LDKELEEAQE R ICEIEER ALKAYRKAQRAL
Sbjct: 499 PWNYFGALNVSAHNNVDMNSLVEMEESLDKELEEAQEQRHICEIEERNALKAYRKAQRAL 558
Query: 466 IEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPT 525
+EAN+ C +LY +REL SA FRS V++DS LLWS+ E +G + + + S N+ L P
Sbjct: 559 VEANSRCAELYHKRELYSAHFRSLVLNDSTLLWSTRNREHVGIALNHTDNGSRNLELMPP 618
Query: 526 STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRK 585
S+H + Y G NQ G+DS++QC +G + H NGQNLGSEPCSE DASTSE L
Sbjct: 619 SSHPERPDYDGRNQPGFDSNIQCASGAPLRTPYMHANGQNLGSEPCSEPDASTSEPLHLN 678
Query: 586 SKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNK 645
K ALN S SN+ SAD++EE LD E+VQPN++ QQ+++ + GRQ + + N
Sbjct: 679 CKTALNIGSSPSNDPNFSADDDEETSPLDHETVQPNYKIQQREESSVGRQKDSINQLNKI 738
Query: 646 LSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSN 705
S S D L LEATLRSELFARLG R SK+S S N++P+ E +ND GS++ Q SN
Sbjct: 739 SSDDCSPDSLTLEATLRSELFARLGRRNLSKNSSS-LNLDPADELGTENDNGSERTQTSN 797
Query: 706 GS-VPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTT 764
GS + S E++Q+ D+GG D+ ER I P IQ++ +K E+ S H
Sbjct: 798 GSFLVSEEERNQEFDLGGNDQHERNISGVPVNIQNQ---KKNDDEYFSICHL-------- 846
Query: 765 MNHSTSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEI-EEVACVNSDKTQA 822
S +++ SP +LR AFGH+K + + + + +E +N+++
Sbjct: 847 ---SATIIYSPNLVLRSAFGHMKDTFALTSTGFQSQKSERDDTCDCNDEAGSINTEEIDH 903
Query: 823 CYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADR 882
IAN + K G + GS+TCN +DP WPLCMYELRGKCNND+CPWQHV+ F++
Sbjct: 904 GITIANPMEESAKDVCGNDFGSFTCNFIVDPFWPLCMYELRGKCNNDQCPWQHVRDFSNG 963
Query: 883 N--KNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQS 940
N K+ HD SDS+ CQ+G T+ Q+ CN GT L +LT PTYIVGLDILK+DS+ + S
Sbjct: 964 NVGKHQHDTSDSSDCQVGLTLHQKKCNGGT-LPNSQCVLTAPTYIVGLDILKSDSHSFDS 1022
Query: 941 VIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRSRNG 998
V+ +G CWQKC S+ +A+S++ KDLPAD + DGRIE +W++Q S+F+
Sbjct: 1023 VVTWGNGQCWQKCFSICIALSNLLQKDLPADEPFLHGSDGRIEVQKNWDKQLSYFQK--- 1079
Query: 999 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI 1058
NKL +L +ALS+LSRA+EADP SEILWITYL I
Sbjct: 1080 --NKL----------FSHFFFLL-----------QALSVLSRAIEADPKSEILWITYLFI 1116
Query: 1059 FYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1118
+Y N SV KDDMFSY+VKHN+ SY +WLMYINSRT L+ RL AY++AL+ LC SA +
Sbjct: 1117 YYGNVKSVAKDDMFSYAVKHNDRSYGVWLMYINSRTRLDDRLVAYESALTALCHQLSAYE 1176
Query: 1119 GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT 1178
DEM+ASACILD+FLQM+ CMSGN EKAIQ+I L AT S+ H L LSDIL LT
Sbjct: 1177 KDEMYASACILDMFLQMMDFLCMSGNVEKAIQKICGLFSVATNSDQCHCLLLSDILASLT 1236
Query: 1179 ISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1238
ISDK +FWVCCVYLV+YRKLP+AV+ EC+KEL AI+WP V L D++KQ A KLIEMA+
Sbjct: 1237 ISDKCMFWVCCVYLVMYRKLPEAVVHKFECDKELLAIEWPCVHLLDEDKQMATKLIEMAM 1296
Query: 1239 NSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL 1298
N V+LY N ES+ E +LRS F + H C+A L+GLEC +LL++Y+KLYP+CLE VL
Sbjct: 1297 NFVKLYVNSESVVNEASLRSLQYFGLCHTRCVAALHGLECCRSLLDEYMKLYPACLEYVL 1356
Query: 1299 MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1358
+ R+Q D S GFEEAL WPK PGI CIWNQY+EYALQ G DFA + RWF
Sbjct: 1357 VSVRVQMTD-----SEGFEEALRNWPKEAPGIHCIWNQYIEYALQKGGPDFAKRVTVRWF 1411
Query: 1359 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1418
+S VQYSQ E D + SH+S E S + +F S+ N +D+MFGYLNLS+ +LL
Sbjct: 1412 NSFSVVQYSQKEKLDAIGTSSSHASLELASVENTDFLTSSSNHLDLMFGYLNLSIAKLLH 1471
Query: 1419 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRA 1478
ND EAR AID A KAAA F+HC+REHAM LL+N+S+ E A IS L +LN YLD A
Sbjct: 1472 NDQIEARNAIDKAFKAAAPPFFEHCLREHAMFLLMNDSQLNEDASISKCLNVLNGYLDDA 1531
Query: 1479 RSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKL 1538
R+ P + L R+FIN IE+PR++QLI VNLVLEV YGPSLLP+NF +
Sbjct: 1532 RAFPVSEPLSRRFINKIEKPRVKQLI-------------VNLVLEVWYGPSLLPQNFRQP 1578
Query: 1539 KDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1598
K+LVDFVE I+EIVPSNYQLAFS KLL+K N D S+L+WAS +LV++IFHA+
Sbjct: 1579 KELVDFVEAILEIVPSNYQLAFSACKLLSKGE--NFIDVPSGSMLYWASITLVNSIFHAI 1636
Query: 1599 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIV 1658
P+APEYVWV+AAG L +I+ IE I ERF+++ALSVYPFSIKLW CYY+LSKT+G +++
Sbjct: 1637 PIAPEYVWVDAAGFLDDIAGIELIYERFYRKALSVYPFSIKLWNCYYNLSKTRGHATSVL 1696
Query: 1659 KAAREKGIEL 1668
+AAREKGIEL
Sbjct: 1697 EAAREKGIEL 1706
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503097|ref|XP_003621837.1| hypothetical protein MTR_7g024000 [Medicago truncatula] gi|355496852|gb|AES78055.1| hypothetical protein MTR_7g024000 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1740 (40%), Positives = 985/1740 (56%), Gaps = 186/1740 (10%)
Query: 15 DIQPRNTTQSNSLKSF-EQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTEDYRHK 73
+IQ R Q S K ++N++ KS+ W + ++NLVIS D
Sbjct: 82 NIQTRTAIQPISRKIIIKKNQLPPKSSP--WTGHASDDNNLVIS---------FSDDDSG 130
Query: 74 TAFENKSNTTRVDGSGRPPTSSAVKVK--NLQQTARNVSKAIPKKLSPSRTLTT--TRNH 129
+ ENK +R++ + + P+SS LQ+ AR++ P K RT T+ T+N
Sbjct: 131 SDIENKGTDSRLERNNKRPSSSLQNSNKLQLQKNARSLHNETPIKFPSKRTFTSSVTKNP 190
Query: 130 G----GANSWVSRPPSVDQRSRVRNF-SIKTKLGSLECG-DQVGLRN-SKLQDLRQQIAL 182
GA SW S+ Q R RNF S L S ECG DQ + N +KLQDLR QIAL
Sbjct: 191 SSISKGAGSW-----SLGQGPRARNFKSTNKTLASQECGRDQGAVSNDNKLQDLRHQIAL 245
Query: 183 RESELKLKAAQQNKD--LVI-----DSCENYHL------GRLDQKEPDKKRLKVSGSYSH 229
RESELKLKA QQ K+ LV+ + H+ +L+ K PD+KR+K+ S+
Sbjct: 246 RESELKLKAVQQMKESALVLGRDPKNDTTRKHIPVSSGAAQLEPKGPDRKRMKIDTSHDA 305
Query: 230 RLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVKWDKQNGK 289
G+Q +P KS +P K+ Q+ NKVD +QK+IP R ES I+K ++ G
Sbjct: 306 PQAVGGQQ-VPVVKSILPSKDSLCGNIYPQERNKVDHNQKEIPLCRGESIIIKSQRETGN 364
Query: 290 QVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERI 349
+ +N+ ++ + N CNQ T + + + F+++
Sbjct: 365 HLSNSVQNMPCRSRE-GDVNYDCNQ----------------TDKSSRLVDPAFIQS---- 403
Query: 350 ESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQVNTASLGNF 409
S PAS+ N+ ++ A L
Sbjct: 404 -SMPASSVP-------------------------------------TNLEALSNAVLMTD 425
Query: 410 SGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEAN 469
+GN NVS +SN+D+QS +DMEEL+DK LEEAQEHR CEIEER A +AY KAQR+L+EAN
Sbjct: 426 NGNANVSEHSNIDLQSFIDMEELIDK-LEEAQEHRHNCEIEERNAYRAYVKAQRSLLEAN 484
Query: 470 ASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQ 529
A C LY QRE+ SA+ RS + S QH+ LG D + + PTS+
Sbjct: 485 ARCNDLYHQREVYSAKLRS------DFSLSLRQHQQLGIGLDYLPKLGYEI---PTSSCL 535
Query: 530 MQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNA 589
Q+ Y N +DS+ Q IN + S H+NG NLGSEPC E DASTSE ++ +A
Sbjct: 536 RQAEY-NINNPSFDSNDQGINNRHSDTSCHHKNGANLGSEPCIEPDASTSEPFSQRGNHA 594
Query: 590 LNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAV 649
+G+ +E+ S +E EE S + EY++K Q ++ +QI D N S
Sbjct: 595 ADGVYSPMDEVDTSDNENEEISLAGHTSNNLDAEYRRK-QDSKAKQIDLDTASNADYSTG 653
Query: 650 SSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVP 709
S QD LLLEATLRSELFARLG R K + C N E + E A+N++GS+K ++ +G+VP
Sbjct: 654 SPQDSLLLEATLRSELFARLGKRA-KKSNIPCNNFE-TAEPGAENEVGSEKNRVHHGTVP 711
Query: 710 SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFH-STYHSKGNKFPTTMNHS 768
++ +D+ G ++ ER I +IQ + + + + S P+ + HS
Sbjct: 712 LIN--AENNDLKGNERKERNIHMDSDEIQSQQNIGANTVNTNCSAGLGDQGDMPSQVYHS 769
Query: 769 TSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQH--NHGRNFEIEEVACVNSDKTQACYL 825
T+ + PP I R AF L+ +L NQ NQ+ H + + + C++SD+ + L
Sbjct: 770 TNPVNIPPLIFRSAFSELREMSPFSL-NQLPNQNKSGHDNDGQSQNATCLSSDEAKRSML 828
Query: 826 IANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRN-- 883
+ I G E GSY C+ +DP WPLCMYELRGKCNNDECPWQH K + D N
Sbjct: 829 AISMAVTI--GNSLSEEGSYGCSPEVDPFWPLCMYELRGKCNNDECPWQHAKDYGDGNIT 886
Query: 884 KNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIA 943
++ H D+++ Q S + +++CN TK++K H PTY+V LD+LKAD + Y+ + A
Sbjct: 887 QHQHTDTNNGDSQDRSPLHEQNCNGVTKVTKYHKATILPTYLVSLDVLKADQFAYKPIAA 946
Query: 944 RRHGLCWQKCLSVSLAISSIYPKDLPAD--LSLIGDGRIECIGSWNRQSSFFRSRNGV-- 999
R WQK S++LA S++ D LS GD RIE G+W++Q SF + RNGV
Sbjct: 947 HRIAQHWQKHFSITLATSNLLQNGSAEDGPLSHGGDERIEVRGTWSKQLSF-QWRNGVGA 1005
Query: 1000 ------------------------------------------------LNKLKQVELSNE 1011
LN++KQ +E
Sbjct: 1006 YKLEREREREREREATRANLVLHYKGQLSSKDSCHLTHYWVLNSHIVFLNQIKQAMTDSE 1065
Query: 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1071
Q VEMALLILNQ+ NK++G++KALS+LS+ALE +PTS ++WI Y LI+Y + K+DM
Sbjct: 1066 QAVEMALLILNQEINKMQGVRKALSVLSKALETNPTSVVIWIVYSLIYYGSFGPNEKEDM 1125
Query: 1072 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL 1131
F Y+VK EGSY LWLMYINSR L+ R+ AYD+A+S LCR ASA+ D+ SACILDL
Sbjct: 1126 FLYAVKLYEGSYVLWLMYINSRRKLDDRIAAYDSAISALCRHASAAPEDKTCESACILDL 1185
Query: 1132 FLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-RHSLFLSDILTCLTISDKLIFWVCCV 1190
FLQM+ C CMS N E AIQR S + PAT +D + L LSD+L CLT+SDK + WVCCV
Sbjct: 1186 FLQMMDCLCMSRNVENAIQR-SYGVFPATTKSDVPNLLSLSDLLNCLTVSDKCVLWVCCV 1244
Query: 1191 YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250
YLVIYRKLP A++Q EC K++ I+WP V L +DEK+RA+KL+E A + S ++
Sbjct: 1245 YLVIYRKLPGAIVQNFECTKDILDIEWPIVSLSEDEKERAVKLMETAAEYIN--SRAFTM 1302
Query: 1251 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1310
E E +L+ A FA+NH+ L+ +EC+ +L ++Y+KLYP C+ELVL+ A++QK D G
Sbjct: 1303 ESEDDLKCAQHFALNHLRFRVALDRIECARSLFDRYVKLYPFCIELVLVSAQIQKQDLGV 1362
Query: 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1370
+ + FE+ + +WPK VPGIQCIWNQY+ A+ N R D A E+ RWFHS WKVQ
Sbjct: 1363 GNFMVFEDTISRWPKIVPGIQCIWNQYIANAIHNQRMDLAKEITVRWFHSAWKVQDPPYG 1422
Query: 1371 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA 1430
+D S S + S S QMD+MFGYLNLS++ Q D EA +A++
Sbjct: 1423 GTDATDDGNSCGLVGLGSKFVSDTSNSGHKQMDMMFGYLNLSIYHFFQEDKTEASIAVNK 1482
Query: 1431 ALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD-RARSLPYLKLLPR 1489
A +R++ M ++ + S EG P S ++L Y+D +++L + L R
Sbjct: 1483 ARDTVGFAGLDQYIRKYVMFMVCDASSLNEGDPESVVKRMLEVYMDGSSQALLAPRALTR 1542
Query: 1490 QFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIM 1549
+F+++I++PR+Q LIDN+L PVS D S++NL+L+ +G SLLP+ S K LVDFVE IM
Sbjct: 1543 KFLDSIKKPRVQNLIDNILRPVSFDCSVLNLMLQSWFGSSLLPQTVSDPKLLVDFVERIM 1602
Query: 1550 EIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEA 1609
E+VP N+QLA +V KLL+KD++ +D S+ FW+ S+LV+AI A+P+ PEYVWVEA
Sbjct: 1603 EVVPHNFQLAIAVCKLLSKDYSS--SDLNSTSLQFWSCSTLVNAITGAIPIPPEYVWVEA 1660
Query: 1610 AGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1669
A L + IE IS+RF+K+ALSVYPFSI LWKCYY L + GD N+I++ A+E+GI LD
Sbjct: 1661 AAFLQSAMGIEAISQRFYKKALSVYPFSIMLWKCYYKLFLSNGDANSIIEEAKERGINLD 1720
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086267|emb|CBI31708.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1035 (52%), Positives = 664/1035 (64%), Gaps = 131/1035 (12%)
Query: 643 NNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQ 702
N K + S +D LLLEATLRSELFARLG+RT SK+SG +++EP+V++ ++++G DK Q
Sbjct: 659 NTKFATDSPEDSLLLEATLRSELFARLGVRTLSKNSGHDYDIEPAVDREVEDNVGRDKTQ 718
Query: 703 MSNGSVP-SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVE-KGLLEFHSTYHSKGNK 760
M ++P S E++QQ D+GG +PE I E P +I +C + G EF T K +K
Sbjct: 719 MRMRNIPFSDAEKTQQLDLGGAGRPETSISEIPVEIDRQCYEKFSGNNEFQPTDDPK-DK 777
Query: 761 FPTTMNH--STSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNS 817
F H +TSV SPP +LR AFGH+K
Sbjct: 778 FSKREVHQSTTSVTFSPPFVLRSAFGHMK------------------------------- 806
Query: 818 DKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVK 877
LI +S D V+ G E GSYTCNLA+DP WPLCMYELRGKCNN+EC WQHVK
Sbjct: 807 ----VTSLITSSTLDTVRDGFG-EAGSYTCNLAVDPFWPLCMYELRGKCNNEECVWQHVK 861
Query: 878 YFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQ 937
+ + N N HD+SD+A +G L + +
Sbjct: 862 DYTNNNMNQHDESDNADWHLG--------------------------------LSSHQGK 889
Query: 938 YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRS 995
+++ + C QKC S LA+SS+ KD P D L DGR+E GSWNRQS + +
Sbjct: 890 FEAWCISQ---CGQKCFSTILAVSSLLQKDFPVDQPLYHGSDGRLEVHGSWNRQSLYIQP 946
Query: 996 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY 1055
RNGV+ L + S +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI Y
Sbjct: 947 RNGVVVCLLILFYS----LEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVY 1002
Query: 1056 LLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1115
LLI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR AS
Sbjct: 1003 LLIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHAS 1062
Query: 1116 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT 1175
ASD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILT
Sbjct: 1063 ASDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILT 1122
Query: 1176 CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1235
CLTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1123 CLTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMG 1182
Query: 1236 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1295
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLE
Sbjct: 1183 TAVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLE 1242
Query: 1296 LVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1355
LVL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M
Sbjct: 1243 LVLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMS 1302
Query: 1356 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1415
RW++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+R
Sbjct: 1303 RWYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYR 1362
Query: 1416 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL 1475
L QND EAR+ ID +LK AA E+FKHCVREHAM +L +
Sbjct: 1363 LFQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDG-------------------- 1402
Query: 1476 DRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNF 1535
+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+
Sbjct: 1403 ------------------------VQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQES 1438
Query: 1536 SKLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAI 1594
SKLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1439 SKLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAI 1495
Query: 1595 FHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL 1654
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G++
Sbjct: 1496 SQAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNM 1555
Query: 1655 NTIVKAAREKGIELD 1669
+++V AA+EKGIELD
Sbjct: 1556 DSVVAAAKEKGIELD 1570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823849|ref|XP_002879807.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325646|gb|EFH56066.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/1642 (40%), Positives = 917/1642 (55%), Gaps = 187/1642 (11%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP+ G N NLVI+FSDDDSGS+++ R +T N + + G+ P T S K+K +Q
Sbjct: 95 FPARGNNSNLVINFSDDDSGSESDGNR-RTQTSNIQSKGTMSGNRNPSTFSQTKLKGPRQ 153
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQRSRVRNF--SIKTKLGSLEC 162
T ++AI KK P T+T +H A S VS S + +N S +T
Sbjct: 154 TD---NRAITKKPLP----TSTFSHA-ATSKVSNLSSAKEMKANKNIHTSERTVSKDTRL 205
Query: 163 GDQ-VGLRNSKLQDLRQQIALRESELKLKAAQQNKDLV---IDSCENYHL-----GRLDQ 213
+Q V N KLQDL+QQIALRESELKLKAAQ KD + I + +L+
Sbjct: 206 PEQIVNPNNIKLQDLKQQIALRESELKLKAAQPKKDAINPKISPARRVSIISDDTRQLEP 265
Query: 214 KEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPR 273
EP KKRLKVSG + + TD R +PA+ + P+ P DI +
Sbjct: 266 NEPAKKRLKVSGIDTSQPVTDYR--VPAS-AAAPMDVP------------------DIRK 304
Query: 274 SRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQ 333
S + N N SC +S + PV+ +
Sbjct: 305 SLLPG---------------------------VNANPSCKHLGSNSDEI-VPPVVSQHTV 336
Query: 334 LANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGP 393
N +SS K+A + A C+ RE M+NS T D
Sbjct: 337 EGNTSSSVVQKSAGK---------ANCY------EGGRELETMKNSMETIRFFLDP-QIM 380
Query: 394 SFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERK 453
++ + +N + L N GN G+S +D+ SL ++EE LDKELEEAQE +R+CEIEER
Sbjct: 381 TWRQLSCLNNSGLWNIPGNTTAPGHSQLDMLSLTNLEESLDKELEEAQERKRLCEIEERN 440
Query: 454 ALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLS 513
ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E+ F
Sbjct: 441 ALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLLVRDSRLLWPSIHGESPETGFHFL 500
Query: 514 KHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSE 573
+ +GN+ LA T T Q + N Y+S G Q H +GQNLGSEP S+
Sbjct: 501 NNSTGNIDLA-TKTDIAQHTQLESNH-RYNSDC----GGSQPPPHS-RSGQNLGSEPYSD 553
Query: 574 QDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEG 633
ASTS+ LP +K + + S++ + D +E+ +D ES + N +Q +
Sbjct: 554 LGASTSDGLPCSNKQTASRLCSPSSDANILPD--DESFPVDHESTEGNLGHQTE------ 605
Query: 634 RQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRAD 693
N + +Q+ LLLEA+LRS+LF LGMR SK +CFN E +++ +
Sbjct: 606 ----------NLDQTLGNQNALLLEASLRSKLFEHLGMRAESKGV-TCFNGETVIDRGDE 654
Query: 694 NDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHST 753
D+ S++ Q +GS S Q G +K + EAP + + + EF S+
Sbjct: 655 RDVASERTQRDDGSPFSEIYQHNDSREPGANKLQGNPSEAPVE-------RRSIEEFQSS 707
Query: 754 YHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVA 813
+ ++ + +SV LS P+ R HLK + + G + ++ +
Sbjct: 708 VDMESHRSSPENDLLSSVALSGPLFRSTIYHLKVP--------GSSITSLGPEYTLQNKS 759
Query: 814 -CVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECP 872
+ SDK Q L + + ++G YTCNL +DP WPLCMYELRG+CNNDECP
Sbjct: 760 YSLYSDKRQCRSLTQTTVYET-------KIGCYTCNLKVDPSWPLCMYELRGRCNNDECP 812
Query: 873 WQHVKYFADR--NKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDI 930
WQH K F+D +++LHD D ++GS+ Q+ N +K S+ D + PTY+V LD
Sbjct: 813 WQHFKDFSDDSLHQSLHDPPDG---RVGSSSHQKKHN-SSKGSQILDTVVSPTYLVSLDT 868
Query: 931 LKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQS 990
+K DS+ Y+SV+A+RHG W K S LA S+ +++PA + +GRIE +G+ S
Sbjct: 869 MKVDSWSYESVLAQRHGQIWWKHFSACLASSNSLYRNVPAKEN---EGRIEVLGNSKTYS 925
Query: 991 SFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI 1050
S+FR ++ ++ ALSLLS+ LE DPTSEI
Sbjct: 926 SYFRIKHSLM---------------------------------ALSLLSQCLEGDPTSEI 952
Query: 1051 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVL 1110
LW YLLI++ S GK DMFSY VKH+ SY +WLMYI+SR LN + AYDAALS L
Sbjct: 953 LWTVYLLIYHVYEGSDGK-DMFSYGVKHSSRSYVIWLMYISSRGQLNDQFFAYDAALSAL 1011
Query: 1111 CRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1170
C AS S D HASACILD+ LQM C+SGN KAIQR S+L PA S+D +
Sbjct: 1012 CNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRTSKLQAPAAVSDDPDFSLM 1070
Query: 1171 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1230
S ILTCLT SDK +FWVCCVYLVIYRKLPD+++Q LE EKEL I+WP V L+ D KQ A
Sbjct: 1071 SHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIVQRLEMEKELLEIEWPSVNLDGDVKQMA 1130
Query: 1231 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY 1290
++L + + SVE +NG S E R A FA+NH M ++ LE ++L+ +KLY
Sbjct: 1131 LRLFDKGMRSVEHCTNGLS-ENGIQKRPAGLFALNHALFMVAVDELESCRDILKASVKLY 1189
Query: 1291 PSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1350
P+CLEL L+ R+Q + D+ S GFEE L + K IQCIWNQY EYALQ G +D A
Sbjct: 1190 PTCLELKLLAVRMQSKELKDMFSSGFEELLKQEAKEASCIQCIWNQYAEYALQGGSYDLA 1249
Query: 1351 AELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1410
ELM RW+ SVW V + + ++A+ ++ + +V++ +Q+DVMFGYLN
Sbjct: 1250 RELMSRWYVSVWDVLSHK---NKTVLANEEEGDDSLLESALSDLNVAS-DQVDVMFGYLN 1305
Query: 1411 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKL 1470
LSLH LLQ++W ARLAID ALKA A EHF +C+REHA+ LI+E + I+ Q++L
Sbjct: 1306 LSLHNLLQSNWTGARLAIDQALKATAPEHFMYCLREHAVFQLIDELQATGEFSINLQMRL 1365
Query: 1471 LNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPS 1529
LNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+PVSS+ +VN+VLE +GPS
Sbjct: 1366 LNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAPVSSELLVVNVVLEAWHGPS 1425
Query: 1530 LLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSS 1589
L+P SK K+LVDFVE I+ +VP NY LA SV KLL K+ + + + + FWA +
Sbjct: 1426 LVPEKLSKQKELVDFVETILGLVPCNYPLALSVSKLLRKEEKHSDSGS-SSGIHFWAGLN 1484
Query: 1590 LVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSK 1649
LVS I A+PVAPEY+WVEA I+ NI+ + +ERF K+ALSVYP S+KLW+CY L K
Sbjct: 1485 LVSTISCAIPVAPEYIWVEAGEIVSNINGFKTRAERFLKKALSVYPMSVKLWRCYRSLCK 1544
Query: 1650 T--KGDLNTIVKAAREKGIELD 1669
+ + I +AA +KGI LD
Sbjct: 1545 SIEERRGIEIEEAAIKKGITLD 1566
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254612|ref|NP_181490.5| uncharacterized protein [Arabidopsis thaliana] gi|330254602|gb|AEC09696.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1660 (39%), Positives = 905/1660 (54%), Gaps = 211/1660 (12%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 162
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 163 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 210
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 211 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 270
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 271 IPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHN 330
I +S + N N+SC S + PV+
Sbjct: 299 IRKSLLPG---------------------------VNANSSCKHLGSKSDEI-VPPVIPQ 330
Query: 331 TSQLANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK- 389
+ N +SS K+ ++ + G + N R + + + K ++G+
Sbjct: 331 HTVEGNTSSSVLQKSTGKV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQ 382
Query: 390 -IDGPSFNNVHQV---NTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRR 445
S NN ++ N + L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R
Sbjct: 383 VFSRSSNNNWKRLPCSNNSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKR 442
Query: 446 ICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHET 505
+ EIEER ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E
Sbjct: 443 LFEIEERNALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGEN 502
Query: 506 LGNEFDLSKHVSGNMHLAPT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQN 555
F + +G++ LA S H+ S YVG + + S
Sbjct: 503 PETGFHFLNNSTGSIDLATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS---------- 552
Query: 556 FSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDL 615
GQNLG S+ ASTS+ LP +K + + S++ + D+E + +D
Sbjct: 553 -------GQNLG---YSDLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDH 600
Query: 616 ESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFS 675
ES + N +Q++ N + +Q+ LLLEA+LRS+LF RLGMR S
Sbjct: 601 ESTEGNPGHQKE----------------NIDQTLGNQNALLLEASLRSKLFDRLGMRAES 644
Query: 676 KDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 735
+ G+CFN E +++ + D GS+ Q NGS S G +K + EAP
Sbjct: 645 R-GGTCFNEETVIDRGDERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPV 703
Query: 736 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSN 795
+ + +E+ L + + + ++ +SV LS P+ R HLK
Sbjct: 704 ERRS---IEENSLNYQLSIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP------- 753
Query: 796 QSGNQHNHGRNFEIE-EVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPL 854
+ + G + ++ + + SDK Q L IV K++G YTCNL +DP
Sbjct: 754 -GSSITSLGPEYILQNKTYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPS 805
Query: 855 WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSK 914
WPLCMYELRG+CNNDEC WQH K F+D +LH ++GS+ Q+ N +K S+
Sbjct: 806 WPLCMYELRGRCNNDECSWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQ 862
Query: 915 GHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSL 974
D + PTY+V LD +K DS+ Y+SV+A+RHG W K S LA S+ +++PA +
Sbjct: 863 ILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN- 921
Query: 975 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKA 1034
+GRI +G+ SS+FR ++ ++ + Q A
Sbjct: 922 --EGRIVVLGNSKTYSSYFRIKHSLMWHIFQ----------------------------A 951
Query: 1035 LSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRT 1094
LSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR
Sbjct: 952 LSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRG 1010
Query: 1095 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154
LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRIS+
Sbjct: 1011 QLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISK 1069
Query: 1155 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFA 1214
L PA S+D +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct: 1070 LQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKELLE 1129
Query: 1215 IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN 1274
I+WP V L+ D KQ A++L + + SVE +N ++K R A FA+N+ M ++
Sbjct: 1130 IEWPTVNLDGDLKQMALRLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVD 1184
Query: 1275 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1334
LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIW
Sbjct: 1185 ELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIW 1244
Query: 1335 NQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSD 1391
NQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D S S
Sbjct: 1245 NQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS----- 1299
Query: 1392 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLL 1451
+ +V++ +Q+DVMFGYLNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+
Sbjct: 1300 -DLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQ 1357
Query: 1452 LINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSP 1510
LINE + I+ Q++LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+P
Sbjct: 1358 LINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAP 1417
Query: 1511 VSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1570
VSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+
Sbjct: 1418 VSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEE 1477
Query: 1571 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRA 1630
+ + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+A
Sbjct: 1478 KQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKA 1536
Query: 1631 LSVYPFSIKLWKCYYDLSKT--KGDLNTIVKAAREKGIEL 1668
LSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1537 LSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3355487|gb|AAC27849.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1660 (39%), Positives = 895/1660 (53%), Gaps = 221/1660 (13%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 162
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 163 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 210
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 211 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 270
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 271 IPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHN 330
I +S + N N+SC S + PV+
Sbjct: 299 IRKSLLPG---------------------------VNANSSCKHLGSKSDEI-VPPVIPQ 330
Query: 331 TSQLANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK- 389
+ N +SS K+ ++ + G + N R + + + K ++G+
Sbjct: 331 HTVEGNTSSSVLQKSTGKV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQ 382
Query: 390 -IDGPSFNNVHQV---NTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRR 445
S NN ++ N + L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R
Sbjct: 383 VFSRSSNNNWKRLPCSNNSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKR 442
Query: 446 ICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHET 505
+ EIEER ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E
Sbjct: 443 LFEIEERNALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGEN 502
Query: 506 LGNEFDLSKHVSGNMHLAPT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQN 555
F + +G++ LA S H+ S YVG + + S
Sbjct: 503 PETGFHFLNNSTGSIDLATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS---------- 552
Query: 556 FSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDL 615
GQNLG S+ ASTS+ LP +K + + S++ + D+E + +D
Sbjct: 553 -------GQNLG---YSDLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDH 600
Query: 616 ESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFS 675
ES + N +Q++ N + +Q+ LLLEA+LRS+LF RLGMR S
Sbjct: 601 ESTEGNPGHQKE----------------NIDQTLGNQNALLLEASLRSKLFDRLGMRAES 644
Query: 676 KDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 735
+ G+CFN E +++ + D GS+ Q NGS S G +K + EAP
Sbjct: 645 R-GGTCFNEETVIDRGDERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPV 703
Query: 736 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSN 795
+ + +E+ L + + + ++ +SV LS P+ R HLK
Sbjct: 704 ERRS---IEENSLNYQLSIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP------- 753
Query: 796 QSGNQHNHGRNFEIE-EVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPL 854
+ + G + ++ + + SDK Q L IV K++G YTCNL +DP
Sbjct: 754 -GSSITSLGPEYILQNKTYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPS 805
Query: 855 WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSK 914
WPLCMYELRG+CNNDEC WQH K F+D +LH ++GS+ Q+ N +K S+
Sbjct: 806 WPLCMYELRGRCNNDECSWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQ 862
Query: 915 GHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSL 974
D + PTY+V LD +K DS+ Y+SV+A+RHG W K S LA S+ +++PA +
Sbjct: 863 ILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN- 921
Query: 975 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKA 1034
+GRI +G+ SS+FR ++ ++ + Q A
Sbjct: 922 --EGRIVVLGNSKTYSSYFRIKHSLMWHIFQ----------------------------A 951
Query: 1035 LSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRT 1094
LSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR
Sbjct: 952 LSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRG 1010
Query: 1095 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154
LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRIS+
Sbjct: 1011 QLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISK 1069
Query: 1155 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFA 1214
L PA S+D +S ILTCLT SDK I YRKLPD++++ LE EKEL
Sbjct: 1070 LQAPAAVSDDPDFSLMSHILTCLTYSDKFI----------YRKLPDSIIRRLEMEKELLE 1119
Query: 1215 IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN 1274
I+WP V L+ D KQ A++L + + SVE +N ++K R A FA+N+ M ++
Sbjct: 1120 IEWPTVNLDGDLKQMALRLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVD 1174
Query: 1275 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1334
LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIW
Sbjct: 1175 ELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIW 1234
Query: 1335 NQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSD 1391
NQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D S S
Sbjct: 1235 NQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS----- 1289
Query: 1392 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLL 1451
+ +V++ +Q+DVMFGYLNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+
Sbjct: 1290 -DLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQ 1347
Query: 1452 LINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSP 1510
LINE + I+ Q++LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+P
Sbjct: 1348 LINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAP 1407
Query: 1511 VSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1570
VSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+
Sbjct: 1408 VSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEE 1467
Query: 1571 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRA 1630
+ + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+A
Sbjct: 1468 KQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKA 1526
Query: 1631 LSVYPFSIKLWKCYYDLSKT--KGDLNTIVKAAREKGIEL 1668
LSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1527 LSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486637|ref|XP_002279244.2| PREDICTED: uncharacterized protein LOC100253034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/674 (62%), Positives = 504/674 (74%), Gaps = 4/674 (0%)
Query: 997 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYL 1056
NG N++KQ N Q +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI YL
Sbjct: 1445 NGGPNQIKQGLADNVQSLEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVYL 1504
Query: 1057 LIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1116
LI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR ASA
Sbjct: 1505 LIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHASA 1564
Query: 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC 1176
SD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILTC
Sbjct: 1565 SDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILTC 1624
Query: 1177 LTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1236
LTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1625 LTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMGT 1684
Query: 1237 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1296
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLEL
Sbjct: 1685 AVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLEL 1744
Query: 1297 VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356
VL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M R
Sbjct: 1745 VLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMSR 1804
Query: 1357 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL 1416
W++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+RL
Sbjct: 1805 WYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYRL 1864
Query: 1417 LQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD 1476
QND EAR+ ID +LK AA E+FKHCVREHAM +L + SE KE A I+ LK+L YL
Sbjct: 1865 FQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDGSELKEDASINGMLKILKGYLS 1924
Query: 1477 RARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFS 1536
+++ P + L R+FI I++PR+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+ S
Sbjct: 1925 VSQNYPVSEPLSRKFIQTIKKPRVQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQESS 1984
Query: 1537 KLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAIF 1595
KLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1985 KLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAIS 2041
Query: 1596 HAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLN 1655
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G+++
Sbjct: 2042 QAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNMD 2101
Query: 1656 TIVKAAREKGIELD 1669
++V AA+EKGIELD
Sbjct: 2102 SVVAAAKEKGIELD 2115
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100939|ref|XP_002312077.1| predicted protein [Populus trichocarpa] gi|222851897|gb|EEE89444.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/593 (60%), Positives = 452/593 (76%), Gaps = 2/593 (0%)
Query: 1076 VKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM 1135
VK+NE SY LWLMYINSR L+ R+ AY+AAL+ LCR ASA D M+ASACILDLFLQM
Sbjct: 54 VKNNERSYGLWLMYINSRIHLDDRMVAYNAALTALCRQASAFDKGNMYASACILDLFLQM 113
Query: 1136 LQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIY 1195
+ C CMSGN KAIQ+I L A S++ H L LSDIL CLT SDK IFWVCCVYLVIY
Sbjct: 114 MDCLCMSGNVGKAIQKIQGLFPVAANSDEPHFLLLSDILACLTNSDKYIFWVCCVYLVIY 173
Query: 1196 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1255
RKLPDA++Q EC+KEL AI+WP VQL ++EKQRA+KL+EMAV+SVE+ N ESLE + N
Sbjct: 174 RKLPDAIVQCFECDKELLAIEWPYVQLPNEEKQRAVKLVEMAVDSVEMSVNSESLESDKN 233
Query: 1256 LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1315
R A FA++HI C V +GL C NLL KY KLYPSC+ELVL+ ARL+K+ G +S G
Sbjct: 234 GRMAQQFALSHIRCTLVFDGLACCQNLLGKYTKLYPSCVELVLLSARLKKNGLGSVSFEG 293
Query: 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1375
FEEA+ WPK VPGI CIWNQY+E ALQ DFA EL RWF+SV KVQY Q EI D +
Sbjct: 294 FEEAISNWPKEVPGIHCIWNQYIECALQEEGPDFAKELTVRWFNSVSKVQYPQNEILDAV 353
Query: 1376 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1435
+ S S ES S S+ +F + N NQMD+MFG +NLSL +LL D EA +AID ALKAA
Sbjct: 354 DGNSSLGSLESASASNLDFLIPNSNQMDMMFGLINLSLAKLLHKDHVEAHVAIDRALKAA 413
Query: 1436 ASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNI 1495
E+ KHC+ EHA+ LL +E + ++ AP+S +LK+LN YL+ ++LP + L R+FI+NI
Sbjct: 414 PPEYIKHCLSEHAVFLLNHEPKLRKDAPVSEKLKILNGYLNDTQALPVCEPLSRRFIDNI 473
Query: 1496 ERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSN 1555
E+P++QQLI ++LSPVSSDFSLVNLVLEV YGPSLLP ++ K+LVDFVE I+E+VPSN
Sbjct: 474 EKPKVQQLISSILSPVSSDFSLVNLVLEVWYGPSLLPPKSNQPKELVDFVEAILEMVPSN 533
Query: 1556 YQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGN 1615
Y +A SV KLL + + + + +SVL+WA S LV AIFHA+PV PE+VWVEAAGILG+
Sbjct: 534 YPIALSVCKLLCRGY--SYINVTSDSVLYWACSILVDAIFHAIPVPPEFVWVEAAGILGD 591
Query: 1616 ISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIEL 1668
IS ++ IS+RF+K+ALS +PFS+KLW CYY+LSK++G ++T+++ ARE+GIE+
Sbjct: 592 ISGVKLISDRFYKKALSAHPFSMKLWSCYYNLSKSRGYVSTVIQKARERGIEV 644
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483951|ref|XP_004156742.1| PREDICTED: uncharacterized protein LOC101228328 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/650 (53%), Positives = 451/650 (69%), Gaps = 14/650 (2%)
Query: 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085
N EGMKKAL +LSRA+E +P S LW YLLIFYS T + GKDDMFSY+VKHN SY L
Sbjct: 2 NSREGMKKALPVLSRAVENNPKSIALWAVYLLIFYSYTTTGGKDDMFSYAVKHNGQSYEL 61
Query: 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1145
WLMYINSR L+ RL AYD+A+S LC + D +ASA ILDL LQM C CMSGN
Sbjct: 62 WLMYINSRMNLDARLAAYDSAISALCHNIFTHNLDGTYASAHILDLILQMTNCLCMSGNV 121
Query: 1146 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQL 1205
EKAIQRI LL A S++ +S SD+LTCL ISDK IFWVC VYLV+YRKLP A++Q
Sbjct: 122 EKAIQRIFGLLQVAMDSDEPYSFTHSDMLTCLNISDKCIFWVCVVYLVLYRKLPHAIVQQ 181
Query: 1206 LECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1265
LECEKEL I+WP V L + EK RA ++++ AV+ V+ N ESL+ + +S FAVN
Sbjct: 182 LECEKELIEIEWPAVHLTNGEKLRASRVVKKAVDFVDSCLNNESLDSKCYQKSIQMFAVN 241
Query: 1266 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPK 1325
HI C+ +E S NLL+KY+KLYPSC EL+L+ R +KHDFGD + + FE+A+ WPK
Sbjct: 242 HIRCLMAFEDIEFSRNLLDKYVKLYPSCPELLLLDIRARKHDFGDATVMAFEKAIRYWPK 301
Query: 1326 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD------M 1379
VPG+QCIWNQY EY L+NGR ELM R F S K+ S+ P+ +D +
Sbjct: 302 EVPGVQCIWNQYAEYLLRNGRIKCTEELMARRFDSTSKMDCSKTR--TPVNSDCDSLHLL 359
Query: 1380 SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1439
H+S D + N++DV+F YLN S+H+LL ND EARLA + AL+AA+SE
Sbjct: 360 DHASGSIVRALD-----CSPNEVDVVFWYLNHSVHKLLLNDQLEARLAFENALRAASSET 414
Query: 1440 FKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPR 1499
F++C+RE+AM LL +ES E A + +L YL+ AR+ P + L R+FI +I +PR
Sbjct: 415 FRYCMREYAMFLLTDESLLNEAASVGGIRSILEGYLNDARAFPVPEPLSRRFIKDIRKPR 474
Query: 1500 LQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLA 1559
++ L+ N+LSP+S D SLVN +LEV YGPSLLP+ F+K K+LVDFVE I+EI+PSNYQL
Sbjct: 475 VRLLVSNMLSPISPDVSLVNCILEVWYGPSLLPQKFNKPKELVDFVETILEILPSNYQLV 534
Query: 1560 FSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSI 1619
SV K L D N + A P S++FWA S+L+ AIF +VP+ PE++WVEAA IL N+ +
Sbjct: 535 LSVCKQLCNDDNYSSQAASP-SLIFWACSNLIIAIFSSVPIPPEFIWVEAANILANVKGL 593
Query: 1620 EEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1669
E I+ERF KRALSVYPFS++LWK YY++ KT+GD + +++ E+GI+L+
Sbjct: 594 EAITERFHKRALSVYPFSVQLWKSYYNICKTRGDTSAVLQEVNERGIQLN 643
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77556192|gb|ABA98988.1| expressed protein [Oryza sativa Japonica Group] gi|125579753|gb|EAZ20899.1| hypothetical protein OsJ_36538 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1308 (35%), Positives = 692/1308 (52%), Gaps = 176/1308 (13%)
Query: 411 GNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANA 470
G+ V N + SLL+MEE ++ELE+AQEHRR CE+EER+AL+AYR+AQRALIEAN
Sbjct: 510 GDQIVITGQNTSLLSLLEMEEFQERELEDAQEHRRKCEVEEREALRAYRRAQRALIEANE 569
Query: 471 SCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPT--STH 528
C L R+RELCSA+ F+ ++S+L LS +G+ + P+ ++
Sbjct: 570 RCAILRRKRELCSAQVHGFIAENSSLAQP------------LSIQNAGHGLVMPSVLNSQ 617
Query: 529 QMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKN 588
G + NQGG S Q N ++ + D +LLP SK
Sbjct: 618 ANADGQMPGNQGGRSGSPYPEESPQQPVDKHEARSHNF-NDNSTPSDYMEDDLLP-PSKR 675
Query: 589 ALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSA 648
A +S+ + D EE V P E RQIS +
Sbjct: 676 A------RSDCISNLEDHMEETIH-----VYP----------VENRQISGE--------- 705
Query: 649 VSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSV 708
S QD LLEA+LRS L R G +++ +SG ++S G V
Sbjct: 706 -SVQDYELLEASLRSRLVERFGKKSYLNNSGEATE------------------ELSFGKV 746
Query: 709 PSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSK---GNKFPTTM 765
S + ++ +G +QEA + +G++E + H K + P+
Sbjct: 747 --SEIEREKAYVGPL------LQEADENVMTNI---EGMVELGNDAHEKRADSSNAPSIG 795
Query: 766 NHSTSVLLSPPILRGAFGHLKSELCIALS----------NQSGNQHNHGRNFEIEEVAC- 814
N+ +S +FG ELC+ LS Q+ +H G ++ + A
Sbjct: 796 NYDHEENIS------SFG----ELCMPLSVTHPIIPSSAPQNAARHMKGLFPDLHKKASD 845
Query: 815 -VNSDKTQACYLIANSK-PDIVKGYVGKEMGSYT------CNLAIDPLWPLCMYELRGKC 866
N +T +A + PD+ K +M S T + A+DP WP CM+ELRGKC
Sbjct: 846 YKNDCQTSNAASVATVRLPDVAKD--NAKMHSTTRKDMDIVSGAVDPFWPFCMFELRGKC 903
Query: 867 NNDECPWQHVKYFADR-NKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYI 925
N++ECPWQHV++ A R +K+ S I + Q IL PTY
Sbjct: 904 NDEECPWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQH-------------ILPVPTYR 950
Query: 926 VGLDILKADSYQYQSVIARRHGLCWQKCLSVS----LAISSIYPKDLPADLSLIGDGRIE 981
VG ++++AD QSV+A WQ+ S L++ + P D P SL
Sbjct: 951 VGSNLIRADLNLIQSVLASSIWQYWQRGFCASFPFPLSVQRVLPSDAP---SLQAGDDSS 1007
Query: 982 CIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRA 1041
+RQ R + NK+ Q + E +E AL++ NK + +K AL L+RA
Sbjct: 1008 ANFDRDRQLLNLRMLDSRKNKIVQGSVDAELFLEGALILYFGKINKPDRLK-ALLYLARA 1066
Query: 1042 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLD 1101
+EADP++ ILW+ YL I+Y +GKDDMFS++V+HN SY LWLMYINSR + RLD
Sbjct: 1067 IEADPSTVILWVFYLHIYYQKDEGLGKDDMFSHAVQHNVCSYELWLMYINSRLRFDDRLD 1126
Query: 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1161
AY+ ALS+LC+ + +D + S+ +LD+FLQM+ CMSGN +KAI RI +L AT
Sbjct: 1127 AYNDALSMLCQMTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAISRIYGILPTATP 1186
Query: 1162 --SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL-FAIDWP 1218
S D+ L+D+++CLTISD+ IFW+ C+Y+ IYRKLP+ ++ LE K+L ++ W
Sbjct: 1187 DCSGDK---LLADVISCLTISDRCIFWISCIYVSIYRKLPEEIIDQLEFLKDLPNSLVWS 1243
Query: 1219 PVQLEDDEKQRAIKLI-----EMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVL 1273
P++L D + + + L+ ++AV+ E NG+ + LR + AVNHI C+A L
Sbjct: 1244 PIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDP----SYLRLSQFLAVNHINCLATL 1299
Query: 1274 NGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSV-GFEEALIKWPKGVPGIQC 1332
G + NLL KY++ YP C +++ ARL + +G + GF+E L+ WPK V GIQ
Sbjct: 1300 EGFQSCANLLVKYMEEYPMCPHILVFSARLHR-KYGSCPGLKGFDELLLGWPKEVQGIQY 1358
Query: 1333 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ-------VEISDPLVADMSHSSPE 1385
+WNQ E+AL + + A +L+ RWF K Q +EIS+ S SS +
Sbjct: 1359 LWNQCAEHALADNI-ELAEKLLTRWFEEYGKDGDIQSGGATRPMEISNEESVRSSVSSIQ 1417
Query: 1386 ----STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1441
TSTS+ D +F LNLSL+R ++N+ EA++A+D ALK A E ++
Sbjct: 1418 EVGSGTSTSE-----------DQIFWLLNLSLYRTIENNLQEAKVAMDKALKLAHGESYE 1466
Query: 1442 HCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQ 1501
HC++EHA + + ++ L++ YL R+LP LL R+F+ N+++ RL+
Sbjct: 1467 HCIKEHAAIHTLEKTSSSTDVQTQATFSLISGYLVDQRNLPVRDLLSRRFMKNVKKHRLK 1526
Query: 1502 QLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFS 1561
+LID + P S++ +L+N VLEVCYGPSLLP ++K LVDFVE +ME++P+NY+LA +
Sbjct: 1527 RLIDETIGPTSANPALINSVLEVCYGPSLLPETIGEVKYLVDFVESVMEVLPANYRLALA 1586
Query: 1562 VFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEE 1621
V K + K + D++ FWASS L++AIF AVPVAPE VW+E A +L + + E
Sbjct: 1587 VGKFMVKHCTGD--DSISMGTRFWASSILINAIFRAVPVAPESVWLEGASLLEKLQAAET 1644
Query: 1622 ISERFFKRALSVYPFSIKLWKCYYDLSKTKG-DLNTIVKAAREKGIEL 1668
+ +RF+++A SVYPFS KLW Y + K G +I +AAR++GIEL
Sbjct: 1645 V-KRFYQQATSVYPFSFKLWHSYLNSCKASGSSTESIAEAARQRGIEL 1691
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1669 | ||||||
| TAIR|locus:2039797 | 1577 | AT2G39580 "AT2G39580" [Arabido | 0.372 | 0.393 | 0.501 | 3.9e-219 | |
| UNIPROTKB|E1C1R6 | 1696 | ZFC3H1 "Uncharacterized protei | 0.170 | 0.168 | 0.245 | 1.2e-10 | |
| UNIPROTKB|O60293 | 1989 | ZFC3H1 "Zinc finger C3H1 domai | 0.179 | 0.150 | 0.214 | 4.2e-07 | |
| UNIPROTKB|E2QSB0 | 1984 | ZFC3H1 "Uncharacterized protei | 0.179 | 0.151 | 0.205 | 2.5e-06 | |
| UNIPROTKB|F6UU41 | 1994 | ZFC3H1 "Uncharacterized protei | 0.179 | 0.150 | 0.205 | 2.5e-06 | |
| UNIPROTKB|E1BIV7 | 1988 | LOC781886 "Uncharacterized pro | 0.215 | 0.181 | 0.2 | 3.9e-06 | |
| UNIPROTKB|E9PTM2 | 1993 | E9PTM2 "Uncharacterized protei | 0.171 | 0.144 | 0.203 | 0.00019 | |
| UNIPROTKB|F1MAP0 | 1993 | F1MAP0 "Uncharacterized protei | 0.171 | 0.144 | 0.203 | 0.00019 |
| TAIR|locus:2039797 AT2G39580 "AT2G39580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 3.9e-219, Sum P(3) = 3.9e-219
Identities = 322/642 (50%), Positives = 421/642 (65%)
Query: 1033 KALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINS 1092
+ALSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINS
Sbjct: 950 QALSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINS 1008
Query: 1093 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152
R LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRI
Sbjct: 1009 RGQLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRI 1067
Query: 1153 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1212
S+L PA S+D +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct: 1068 SKLQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKEL 1127
Query: 1213 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV 1272
I+WP V L+ D KQ A++L + + SVE + ++K R A FA+N+ M
Sbjct: 1128 LEIEWPTVNLDGDLKQMALRLFDKGMRSVE-HGTNNGIQK----RPAGLFALNYALFMIA 1182
Query: 1273 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 1332
++ LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQC
Sbjct: 1183 VDELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQC 1242
Query: 1333 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMXXXXXXXXXX 1389
IWNQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D
Sbjct: 1243 IWNQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDD------NMLES 1296
Query: 1390 XXXXXXVSNRNQMDVMFGYLNLSLHRLLQNDWNEXXXXXXXXXXXXXSEHFKHCVREHAM 1449
V++ +Q+DVMFGYLNLSLH LLQ++W E EHF HC+REHA+
Sbjct: 1297 ALSDLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAV 1355
Query: 1450 LLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINN-IERPRLQQLIDNLL 1508
LINE + I+ Q++LLNSYLDRA SLP + L +FI+N E+PR+++L+ NLL
Sbjct: 1356 FQLINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLL 1415
Query: 1509 SPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNK 1568
+PVSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K
Sbjct: 1416 APVSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRK 1475
Query: 1569 DHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFK 1628
+ + + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K
Sbjct: 1476 EEKQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLK 1534
Query: 1629 RALSVYPFSIKLWKCYYDLSKTKGDLN--TIVKAAREKGIEL 1668
+ALSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1535 KALSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576
|
|
| UNIPROTKB|E1C1R6 ZFC3H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.2e-10, Sum P(6) = 1.2e-10
Identities = 79/322 (24%), Positives = 143/322 (44%)
Query: 992 FFRSRNGVLNKLK---QVELSNEQC-VEMALLILNQ-DANKLEGMKKALSLLSRALEADP 1046
+F S ++ L+ Q N Q +++A LNQ + + E + L++L+RALE +
Sbjct: 1045 YFTSETDDISNLEASVQENPCNVQLWIKLAYKYLNQNEGSSSECLDSTLNVLARALENNK 1104
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ SY +W ++N L D D
Sbjct: 1105 ENPEIWCHYLRLFSKRGTKEEIQEMCETAVEY-AASYQIWWTFLN----LESSFDGKDYV 1159
Query: 1107 LS-VLCRCASASDGDEMHA--SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1163
+L ++G+E + S +L+ L + +G + A+ + L A N
Sbjct: 1160 CGRILQFLMEVTEGEENPSLLSFQLLETLLYRVHLSLFTGRYQNALLLLQNALKSA---N 1216
Query: 1164 DRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC------EKELFAIDW 1217
++ +S+ LT +SD+ + W+ ++L+ + LP KE F I W
Sbjct: 1217 EK---IISERLT---LSDRCLAWLSYIHLIEFNTLPVKFYDPANVGPSRIMNKEPFLIPW 1270
Query: 1218 PPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNG 1275
VQ D K L+ M ++V+ ++ E+LE + R A CF + N I + +L
Sbjct: 1271 QTVQ---DVKTDPDTLLAMFEDAVKTCTD-ENLEADK--RIAVCFPLYRNMIALLKLLER 1324
Query: 1276 LECSMNLLEKYIKLYPS-CLEL 1296
E ++ L ++L P+ CL L
Sbjct: 1325 WESAVELCRSLLELCPNNCLLL 1346
|
|
| UNIPROTKB|O60293 ZFC3H1 "Zinc finger C3H1 domain-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 4.2e-07, Sum P(6) = 4.2e-07
Identities = 71/331 (21%), Positives = 135/331 (40%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1046
+F + + L+ L N V++ L + LNQ+ + E + AL++L+RALE +
Sbjct: 1339 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECSESLDSALNVLARALENNK 1398
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1399 DNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1457
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
L L A + + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1458 LEFLMGAAKQETSNIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKSA---ND-- 1510
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE------CEKELFAIDWPPV 1220
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1511 ----GIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFVMPWQAV 1566
Query: 1221 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1280
Q D K L+ + ++V+ ++ ESL E + + N I +L E +M
Sbjct: 1567 Q---DVKTNPDMLLAVFEDAVKACTD-ESLAVEERIEACLPLYTNMIALHQLLERYEAAM 1622
Query: 1281 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1307
L + ++ P +C LE LV + + +HD
Sbjct: 1623 ELCKSLLESCPINCQLLEALVALYLQTNQHD 1653
|
|
| UNIPROTKB|E2QSB0 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 2.5e-06, Sum P(6) = 2.5e-06
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1046
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1334 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1393
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1394 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1452
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1453 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1507
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1220
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1508 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1561
Query: 1221 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1280
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1562 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1617
Query: 1281 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1307
L ++ ++ P +C LE LV + + +HD
Sbjct: 1618 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1648
|
|
| UNIPROTKB|F6UU41 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 2.5e-06, Sum P(6) = 2.5e-06
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1046
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1344 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1403
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1404 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1462
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1463 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1517
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1220
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1518 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1571
Query: 1221 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1280
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1572 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1627
Query: 1281 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1307
L ++ ++ P +C LE LV + + +HD
Sbjct: 1628 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1658
|
|
| UNIPROTKB|E1BIV7 LOC781886 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 3.9e-06, Sum P(6) = 3.9e-06
Identities = 79/395 (20%), Positives = 156/395 (39%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1046
+F + + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1338 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1397
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1398 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1456
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
+ L A D + S +L+ L +Q +G + A+ + L AT
Sbjct: 1457 VEFLMGAAKREASDTL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLATDGR--- 1511
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1220
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1512 ------VAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNANPSRIVNIEPFVMPWQAV 1565
Query: 1221 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1280
Q D K L + ++V+ ++ ESL E + + N I +L E ++
Sbjct: 1566 Q---DVKTNPDMLFAVFEDAVKACTD-ESLTVEERVETCVPLYTNMIVLHQLLERYEAAV 1621
Query: 1281 NLLEKYIKLYP-SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1339
L + ++ P +C L + A K + D + + A K P+ + ++
Sbjct: 1622 ELCKCLLESCPMNCQLLESLAALYLKMNQQDKARAVWVTAFEKSPQNA---EVFYHTCKF 1678
Query: 1340 YALQNGRHDFAAELMDRWFHSVWKV---QYSQVEI 1371
+ LQN R D + ++ S +K +YS +++
Sbjct: 1679 FILQN-RGDNLLPFLRKFIASFFKPGFEKYSNLDL 1712
|
|
| UNIPROTKB|E9PTM2 E9PTM2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00019, Sum P(6) = 0.00019
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1046
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1220
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1221 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1270
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1271 AVLNGLECSMNLLEKYIKLY 1290
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
|
|
| UNIPROTKB|F1MAP0 F1MAP0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00019, Sum P(6) = 0.00019
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 992 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1046
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1220
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1221 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1270
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1271 AVLNGLECSMNLLEKYIKLY 1290
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1669 | |||
| pfam10650 | 23 | pfam10650, zf-C3H1, Putative zinc-finger domain | 5e-07 | |
| pfam08424 | 324 | pfam08424, NRDE-2, NRDE-2, necessary for RNA inter | 2e-04 |
| >gnl|CDD|192649 pfam10650, zf-C3H1, Putative zinc-finger domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-07
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 856 PLCMYELRG-KCNNDECPWQHVK 877
PLC YEL G CN+D+C +QH +
Sbjct: 1 PLCPYELTGGVCNDDDCEFQHFR 23
|
This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger. Length = 23 |
| >gnl|CDD|219834 pfam08424, NRDE-2, NRDE-2, necessary for RNA interference | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 1032 KKALSLLSRALEADPTSEILWITYLLIFYS---NTNSVGKDDMFSYSVKHNEGSYALWLM 1088
+K LS+L +AL+ +P SE L + LL +T+ + K + +K N GS LW
Sbjct: 50 EKKLSILEKALKHNPDSERL-LLGLLEEGEKVWDTDELLKR--WEKVLKENPGSPKLWRK 106
Query: 1089 YIN------SRTPLNHRLDAYD---AALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139
Y++ S + Y+ AL S +L LFL++ +
Sbjct: 107 YLDFRQGDFSTFSYSKVRKTYEKCLRALKAALNGTITSHQAVPELEEVMLYLFLRLTRFL 166
Query: 1140 CMSGNTEKAI 1149
+G TE A+
Sbjct: 167 RQAGFTELAV 176
|
This is a family of eukaryotic proteins. Eukaryotic cells express a wide variety of endogenous small regulatory RNAs that regulate heterochromatin formation, developmental timing, defence against parasitic nucleic acids, and genome rearrangement. Many small regulatory RNAs are thought to function in nuclei, and in plants and fungi small interfering (si)RNAs associate with nascent transcripts and direct chromatin and/or DNA modifications. This family protein, NRDE-2, is required for small interfering (si)RNA-mediated silencing in nuclei. NRDE-2 associates with the Argonaute protein NRDE-3 within nuclei and is recruited by NRDE-3/siRNA complexes to nascent transcripts that have been targeted by RNA interference, RNAi, the process whereby double-stranded RNA (dsRNA) directs the sequence-specific degradation of mRNA. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1669 | |||
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.87 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.62 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.54 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.53 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.51 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.46 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.39 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.33 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.28 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.23 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.17 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.15 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.14 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.13 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.09 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.02 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.02 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.01 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.99 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.83 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.81 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.76 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.75 | |
| PF10650 | 23 | zf-C3H1: Putative zinc-finger domain; InterPro: IP | 98.72 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.67 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.67 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.6 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.6 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.44 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.06 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.03 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.02 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.99 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.88 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.86 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.84 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.8 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.43 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.42 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.19 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.08 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.02 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.93 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.86 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.86 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.25 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.19 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.97 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 95.89 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.61 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.52 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.06 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 94.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.59 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.55 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.54 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 93.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.29 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 93.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.2 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 93.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 92.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.42 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.23 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 92.07 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.87 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.44 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.23 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.01 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.89 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 90.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 90.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 90.44 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 90.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 89.93 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 89.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 89.78 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.62 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.4 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.09 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.08 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 86.74 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 86.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 86.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 85.76 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 85.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 84.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 84.59 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.09 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 81.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 81.63 | |
| KOG1492 | 377 | consensus C3H1-type Zn-finger protein [General fun | 81.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 81.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 80.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 80.4 |
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=645.44 Aligned_cols=708 Identities=15% Similarity=0.079 Sum_probs=571.2
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000323 44 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 121 (1669)
Q Consensus 44 ~~~~~g~~~nlvi~fsdd~sgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-~~~~r~~~~~~pkk~~~~~ 121 (1669)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ . -|-.++-|.+++.++.... |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n------~I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-N------MIEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-c------cCCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 55555554 2 2344888989999999999 88888 7888876666
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000323 122 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 192 (1669)
Q Consensus 122 ~f~~tk~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 192 (1669)
+|.. .+.+. +.-.+.++........||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 22222 23334444445555667776 3455588999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCCCCCCCCCcccceeccccccccccCCCcccccccccCCCCCCCCCCCCccCCCcc
Q 000323 193 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 264 (1669)
Q Consensus 193 ~q~k~~~~--------vs~~~~~~~~l~~kepd~krlkv~~sy~~~~~~d~~q~~~~~k~~~~~k~~~~~~~~~~~r~~~ 264 (1669)
|..||.+. ++..+.|.+.+||.||.+||+++++- +.. +||....+-..+-+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~-------~~~--~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSEN-------QIN--VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCcc-------ccc--Cccccceeccccccccc---------
Confidence 99999987 67788899999999999999999998 333 36666666665656555
Q ss_pred cCCCCCCCccccccceeeecccCCccccCCCcccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc
Q 000323 265 DRSQKDIPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLK 344 (1669)
Q Consensus 265 ~~~~k~~p~~r~~s~~vk~~~q~~~~~~~s~~~~~~~~~~~~n~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~~~~~~k 344 (1669)
|..|++ .+..||+.|.+|.|....+ |.| +++ | .+|+.++++..|
T Consensus 211 ------------e~d~~~------------------~le~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~SsS~~sq 254 (753)
T KOG4839|consen 211 ------------ETDDIA------------------NLEAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGECSSSLDSQ 254 (753)
T ss_pred ------------chhHHH------------------hhccccccChHHHhhccch--hhh-hhh-h--hcCccchhhhcc
Confidence 333443 5678999999999999988 665 344 3 899999999999
Q ss_pred ccccccCCCCCccCCCCCCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCCC
Q 000323 345 NAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGNS 419 (1669)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h~ 419 (1669)
.+..+++ +.|++..+.|+ .++..+ ...||++.+|+| +..++|++ +++.++-.+.|++|.+.++ .
T Consensus 255 gsl~ln~-----~kaaR~le~~K-iD~~~s---~~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p--~ 323 (753)
T KOG4839|consen 255 GSLALNV-----LKAARALENNK-IDNPES---WCHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP--K 323 (753)
T ss_pred ccceeeh-----hhhhhHHhhcc-CCCccc---hhheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--c
Confidence 9988886 77888888887 553333 478999999999 88888887 8888999999999999999 9
Q ss_pred cchhhhHHhhHHHhhHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCccccc
Q 000323 420 NVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWS 499 (1669)
Q Consensus 420 n~d~~sl~~mee~~dkeleeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~s~i~~~s~l~~~ 499 (1669)
+++|.++++.|+-.||+++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.||
T Consensus 324 ~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~wp 400 (753)
T KOG4839|consen 324 DYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAWP 400 (753)
T ss_pred hhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999954 89999999999999
Q ss_pred cccccccccccccCCCCCCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 000323 500 SGQHETLGNEFDLSKHVSGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQD 575 (1669)
Q Consensus 500 ~~~~~~~~~g~~~~~~~~~~~~~~-p~---~~~~~~~~~~~~n~~~~~s~~~~~~~~~~~~~~~h~~g~nlg~~~~~~~~ 575 (1669)
-+.| --+|++-++- ++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..+
T Consensus 401 ~~~p--ts~~~~~Lps----v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~g 454 (753)
T KOG4839|consen 401 AYIP--TSIEFNILPS----VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAVG 454 (753)
T ss_pred ccCC--cchhhcccCC----CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhcc
Confidence 5532 2566655544 2233 44 899999999976 55556668999996 8899
Q ss_pred CCccCcCccCccccccCCCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCchH
Q 000323 576 ASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPL 655 (1669)
Q Consensus 576 astse~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~l 655 (1669)
||||..+|+.++.++.+++.| +..+ .|.++++||+++
T Consensus 455 as~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp------------------------------------ 491 (753)
T KOG4839|consen 455 ASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP------------------------------------ 491 (753)
T ss_pred ccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh------------------------------------
Confidence 999999999999999999999 4444 788999998522
Q ss_pred HHHHhhhHHHHHHhccccccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCcc
Q 000323 656 LLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 735 (1669)
Q Consensus 656 llea~lrs~lf~r~g~r~~~~~~~~~~~~e~~~~~~~e~~~g~~~~q~~~~~~~~~~~~~~~~dl~~n~~~e~~~~~~~~ 735 (1669)
|.+|+.+|+|||++..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.++++
T Consensus 492 ---a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~~ 556 (753)
T KOG4839|consen 492 ---AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYHM 556 (753)
T ss_pred ---HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccchh
Confidence 89999999999999999988 99999999999998 8888888772 11222 23 55577777778777
Q ss_pred ccccchhhccCccccccccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhhh
Q 000323 736 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACV 815 (1669)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1669)
.. ..|++|.. +.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |-
T Consensus 557 ~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~y 613 (753)
T KOG4839|consen 557 CK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-CY 613 (753)
T ss_pred HH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-cc
Confidence 66 66777765 55666543 578899999999999999999 6 7889977 44444322 22
Q ss_pred ccccccccceeccCCCCccccccccccccccccCCCCCCCcceeecccc-cccCCCCcchhhhcccccc--cccccCCCC
Q 000323 816 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSDS 892 (1669)
Q Consensus 816 ~sd~~~~~~~~~~~~~~~~~~~~~~~~~s~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--q~~~d~s~~ 892 (1669)
. +..+.+++. +|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+..++ +..|+
T Consensus 614 ~--~r~~~~f~e------~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~---- 680 (753)
T KOG4839|consen 614 G--NRDDDMFNE------QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRN---- 680 (753)
T ss_pred c--chhhHHHhh------hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcC----
Confidence 1 566777765 5666 44566666677999999999999997 9999999999999999997 44444
Q ss_pred CCCCCCCCcccccccccccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000323 893 AGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 965 (1669)
Q Consensus 893 ~~~~~~s~~~e~~~~~~~k~~k~~~~l~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q 965 (1669)
..-..+..-++++++.. |.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++++.|.+.+..
T Consensus 681 ~~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 681 KVQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred chhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 33444455566655554 6888999999999999999999999999999999999999999999999887653
|
|
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=395.86 Aligned_cols=567 Identities=19% Similarity=0.240 Sum_probs=441.9
Q ss_pred cccccccccCCCCCCCcceeecccccccCCCCcchhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000323 840 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 915 (1669)
Q Consensus 840 ~~~~s~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~q~~~d~-s---~~~~~~~~s~~~e~~~~~~~k~~k~ 915 (1669)
++.+++++|++|.|.+++|.|+++|+||+++|.|||..|++|++.+|+|+ + +++||.+.++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 67899999999999999999999999999999999999999999999999 4 889999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000323 916 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 976 (1669)
Q Consensus 916 ~~~l~~pty~v~~d~m~~D~~~-------------------~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~~~~~ 976 (1669)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhccchH----HHHHHHHHHHhcccc-cchhhHHH----HHHHH--HHH
Q 000323 977 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1041 (1669)
Q Consensus 977 d~ri~~~--~~~--~~~~rYF~~~~d~i~~le~~~~d~----qlWLelAl~~Lnq~~-n~~g~ydA----ALdLL--srA 1041 (1669)
+..|.++ |++ +++++| .+++|++.+||++|..+ |+|++.|.++|++.+ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999977 66777777 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1042 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1042 LEINP-tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
||.+. ++++.|++|+.++. |++....+|+..|+++-| .|.=||.|..-+.++..+.++++...++++.+.+.. .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999975 777789999999999997 677788999999999998889999999998777766 3
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccc
Q 000323 1121 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1199 (1669)
Q Consensus 1121 r~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLP 1199 (1669)
...+|++++|+++.-+++-..+|+-..+++ |+++|.+..+. .|+ ..||...|+|.+|..+++ .+.+-.||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 467999999999999999999999888888 66666555443 333 789999999999999999 89999999
Q ss_pred h-HHHhhhh------hhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHH
Q 000323 1200 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1270 (1669)
Q Consensus 1200 G-d~y~q~e------~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~l 1270 (1669)
. .+++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+. +++++-+ .++..+..+ ++|...
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHH--HHHhccccCccccccch
Confidence 8 8888777 356778899999999999999 5555443333332 3444433 233222222 332222
Q ss_pred HH---hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccH-HHHHHHHH--hCCCCCc--hHHHHHHHHHHH
Q 000323 1271 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS-VGFEEALI--KWPKGVP--GIQCIWNQYVEY 1340 (1669)
Q Consensus 1271 I~---LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~-svle~AL~--~~PkNa~--g~~caW~QLIq~ 1340 (1669)
.. .+.-+++++++..+++.||-.|.+ .|++.|++... -..+| .+|.++++ .+|.+.+ +++|.+--+=.-
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~sI~ens 565 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKFSILENS 565 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHHHHHhcc
Confidence 11 346788999999999999999999 99999988654 56677 49999999 8898888 888887322111
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhccc-CCCCCCC-----CCCCCCcccccccccchhhHHHHHHH--H
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD-MSHSSPE-----STSTSDPEFSVSNRNQMDVMFGYLNL--S 1412 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkg-ns~i~~e-----s~s~~vSDfy~~~~~Q~d~~fa~LGD--~ 1412 (1669)
+ +.++..-. |. +-.++..-..+....+|-+... +.+++.. .-++..-|.+ ..|+ .|++. |
T Consensus 566 ~--~~d~~s~r-il--ss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~i~~ 633 (753)
T KOG4839|consen 566 G--DNDLPSLR-IL--SSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWLIYC 633 (753)
T ss_pred c--cccchhhh-hh--hhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhhhhe
Confidence 1 11222211 11 1112222233444455544422 2222111 0112233333 3444 77777 5
Q ss_pred HHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000323 1413 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1452 (1669)
Q Consensus 1413 L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1452 (1669)
|..-|+-...+.+-+||.+.+-= ++ ..-.|..|..|-.
T Consensus 634 y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 634 YCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred ecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 66667899999999999999622 22 2345777777754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=253.68 Aligned_cols=321 Identities=18% Similarity=0.208 Sum_probs=273.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.+.++-|..+|+|+|.++|..-.+|...+.+...+++.++....|++||+++|....||+||.+.+|.- +++ ..|+
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv---~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDV---PAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCc---HHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999987 445 8999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
.+|.+++..+ |.. +||||+.++|+..+..++.|.. |++.|.. .++ ..| .|+
T Consensus 605 ~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~-~sg--------------TeR--v~m 655 (913)
T KOG0495|consen 605 VILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARS-ISG--------------TER--VWM 655 (913)
T ss_pred HHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhc-cCC--------------cch--hhH
Confidence 9999999999 455 9999999999999999999988 6653333 222 445 899
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1267 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1267 (1669)
+++++.+|.-.- +.+..|.+-|+..|- .+.|+=+|
T Consensus 656 Ks~~~er~ld~~----------------------------eeA~rllEe~lk~fp-----------------~f~Kl~lm 690 (913)
T KOG0495|consen 656 KSANLERYLDNV----------------------------EEALRLLEEALKSFP-----------------DFHKLWLM 690 (913)
T ss_pred HHhHHHHHhhhH----------------------------HHHHHHHHHHHHhCC-----------------chHHHHHH
Confidence 999998887652 566666676544443 56666443
Q ss_pred --HHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1268 --WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1268 --R~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+++...++.+.|+..|...++.||.|+.|||..+.|+++.+ +..|+.+|+++...+|+|+. .|...|+++++.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHHHc
Confidence 33334779999999999999999999999999999999885 88999999999999999999 888889999999
Q ss_pred CChHHHHHHHHHHHHhhhhccc-------------ccccchhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHH
Q 000323 1345 GRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1410 (1669)
Q Consensus 1345 en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLrkg-ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LG 1410 (1669)
|+.+.|..++.+.++.++.++. ++..++|+|++. +.|- .+|.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph------------------------Vlla 822 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH------------------------VLLA 822 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch------------------------hHHH
Confidence 9999999999998888887775 888999999987 4442 5778
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000323 1411 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1456 (1669)
Q Consensus 1411 D~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~ 1456 (1669)
.+..+|.+.++++|.+||++|++.+|++ =.+|-.+--|-...|+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998 6777666666556553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-19 Score=212.15 Aligned_cols=379 Identities=15% Similarity=0.030 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1084 (1669)
+.+.++..|..+++++ +++.|+..|+++++++|.++++|+.++.+|...++-+++..+|++|++..|++..
T Consensus 21 ~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKN-----KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcC-----ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 4567888888888874 5799999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++..|...+ .|++|+..+.+.....++.. .+++..+...|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 677788888 88999999976654332333 67889999999999999999998888775 22223
Q ss_pred cccchHHHHHHhhccCCcchh--hHHHH---H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHH
Q 000323 1165 RHSLFLSDILTCLTISDKLIF--WVCCV---Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1237 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~A--WL~~i---Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA 1237 (1669)
. ...+.....++..++-..| ++... . ......+.|.++...|...+|... +.++++.+|++...++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 4455556666666665444 22222 1 233455678889999999999998 8899999999988888876
Q ss_pred HHHHhhhcCCcchhhhhhhchhhHhH----HHHHHHH--HHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCC
Q 000323 1238 VNSVELYSNGESLEKETNLRSAHCFA----VNHIWCM--AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1310 (1669)
Q Consensus 1238 ~dYY~~~~ndesla~~~~~kt~~~fK----LN~IR~l--I~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~ 1310 (1669)
.-++. .|+-+.+...-.++....| ..+++.+ ...++.+.|+.+|.++++..|..... .+.+..+...+..+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44544 4444433332111111111 1112222 23679999999999999999998776 33333223333377
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH------------Hhhhhccc-ccccchhhhcc
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF------------HSVWKVQY-SQVEISDPLVA 1377 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff------------~gia~~Q~-~~deALDaLrk 1377 (1669)
+|+..|++++...|++.. ++..++......|++++|+.++.+.. .+..+... +.++|++.+++
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 78888899999999999999988732 23333333 77888888876
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1378 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1378 gns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
.....+ . ..+++ ..++.++.. .|++++|...|+++++..|..
T Consensus 389 ~~~~~~-----~-~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 389 ATELDP-----E-NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHhcCC-----C-CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc
Confidence 532211 0 12222 556677777 899999999999999888876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-17 Score=200.94 Aligned_cols=412 Identities=13% Similarity=0.021 Sum_probs=278.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+++.|+..|..+++.+|+...+++.++.+|...+.-.++..+|+++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 56788888888888888888888888888888888888888888888888887765 556677777 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
+|+..|.++.... +.. .+++..+..+|...|++++|+..+.+... ..-.+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 8888888887776 343 67788888889999999999987777664 221122 223333445555555543
Q ss_pred h--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhc
Q 000323 1185 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1257 (1669)
Q Consensus 1185 A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~k 1257 (1669)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+|.-|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLGAIYLG--KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3 111111 111223345667778888888887 777777788877777777533443 4444433333222
Q ss_pred hhhHh------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchH
Q 000323 1258 SAHCF------AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGI 1330 (1669)
Q Consensus 1258 t~~~f------KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~ 1330 (1669)
+.... -.++.+.+...++.+.|+.+|+++++.+|.++..+...+.+ ...+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--
Confidence 11111 11334444457789999999999999999998883333332 2333478889999999999999888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccc
Q 000323 1331 QCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVS 1397 (1669)
Q Consensus 1331 ~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~ 1397 (1669)
.|..++......|++++|+.++++... +..+... +.++|++.+++.....+. ....
T Consensus 569 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~--- 637 (899)
T TIGR02917 569 --PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALA--- 637 (899)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHH---
Confidence 888889999999999999999887332 2222222 777888888765322110 0122
Q ss_pred cccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------
Q 000323 1398 NRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------ 1471 (1669)
Q Consensus 1398 ~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------ 1471 (1669)
+..++.++.+ .|++++|...|+++++.+|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 638 --------~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~~ 702 (899)
T TIGR02917 638 --------LLLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPKA 702 (899)
T ss_pred --------HHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcCC
Confidence 2678888888 999999999999999999998 778888887776544 4666655333 222
Q ss_pred -HHHHhhhcccccccc--cchhhh
Q 000323 1472 -NSYLDRARSLPYLKL--LPRQFI 1492 (1669)
Q Consensus 1472 -sTYLDTAWILf~~~~--lARiYI 1492 (1669)
..|..-+++++..+. +|..+.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 555555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-15 Score=193.18 Aligned_cols=589 Identities=10% Similarity=0.002 Sum_probs=363.3
Q ss_pred cccccccccch--hhhh----h-hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000323 987 NRQSSFFRSRN--GVLN----K-LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1052 (1669)
Q Consensus 987 ~~~~rYF~~~~--d~i~----~-le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW------- 1052 (1669)
-+|+||..... |... + +.-.|.+.+.+..++...+.++ +++.|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 36667766333 2222 2 2234456688888877777664 56999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcch
Q 000323 1053 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1123 (1669)
Q Consensus 1053 ---------y~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~ 1123 (1669)
..++.++...+..+++...|+++++.+|++..+...|...-....+ .+++|+..|+++.+.+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g---~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA---QRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc---cHHHHHHHHHHHHHhC-CCC--
Confidence 4556678888999999999999999999998866655543211222 5699999999999998 565
Q ss_pred hhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c------------ccchHHHHHHhhccCCcch-hhHHH
Q 000323 1124 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI-FWVCC 1189 (1669)
Q Consensus 1124 ~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s-E------------~~lSLsKi~~YLt~sDR~~-AWL~~ 1189 (1669)
.++.+.+..++...|+++.|+..+.++......... . ..-.+..+..|+..-.... +--+.
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 789999999999999999999999887641100000 0 0001111222222111100 00000
Q ss_pred HHH---------HHh-hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchh
Q 000323 1190 VYL---------VIY-RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1259 (1669)
Q Consensus 1190 iYl---------lrY-rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~ 1259 (1669)
..+ ..| ..+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-..+...-.++.
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 000 001 12347788888999999999 999999999999999999755555 455444444422222
Q ss_pred hHhHH--------------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHH
Q 000323 1260 HCFAV--------------------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1317 (1669)
Q Consensus 1260 ~~fKL--------------------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle 1317 (1669)
...|- .....+...++.++|+.+|.++++..|.+... .|...|+..+ ..++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 22211 11112233669999999999999999999988 3444444444 4889999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------Hhhhh-cccccccchhhh
Q 000323 1318 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWK-VQYSQVEISDPL 1375 (1669)
Q Consensus 1318 ~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff---------------------~gia~-~Q~~~deALDaL 1375 (1669)
+|+.++|++.. +|..+..... .++.++|+..+..+- ++-.+ .+.+.++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 7777776654 568898887765421 11111 123778888888
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000323 1376 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1455 (1669)
Q Consensus 1376 rkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1455 (1669)
++....-+. ...++ -.++.+|++ .|++++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876332110 01222 567778888 999999999999999999988 677777787765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000323 1456 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1518 (1669)
Q Consensus 1456 ~dL~KAeq-------------MS~~~KtV--sTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL~~~S~dss~~ 1518 (1669)
. .++|.. |......+ ..+|..|.++...++ +|..++ . ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 122333444445544 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000323 1519 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1598 (1669)
Q Consensus 1519 nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~ 1598 (1669)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11122334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000323 1599 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1661 (1669)
Q Consensus 1599 pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPf------S~~LW~~y~~~~~~~g~~~~ive~a 1661 (1669)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3457776677778888886555553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=187.64 Aligned_cols=294 Identities=10% Similarity=-0.034 Sum_probs=215.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.|+++.|+..|.+||+++|+++++++.++.+|+..++..++..++++||+++|.|.++.++....+ .|++|+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~--------~~~kA~ 128 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP--------VEVKSV 128 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc--------cChhHH
Confidence 367899999999999999999999999999999999999999999999999999999877765554 889999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1179 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL--------Y~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~ 1179 (1669)
.+|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .++... -+.|.+.++|+.+
T Consensus 129 ~~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~~~~~-vL~L~~~rlY~~l 195 (987)
T PRK09782 129 TTVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--ASPEGK-TLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CCCCcH-HHHHHHHHHHHHH
Confidence 9999999999 787 9999999998 999988888887 55554 443333 4899999999999
Q ss_pred CCcc-hh----hHHHHH--HHHhhccchHHHhhh-hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1180 SDKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1180 sDR~-~A----WL~~iY--llrYrvLPGd~y~q~-e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+|-. .. .|+..+ ...|...++++|+++ +. +++..+ +...++.+|.-..++ +++|.. .|+.+.+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk~d~~l~~al----a~~yi~-~G~~~~A 266 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIFTDPQSRITY----ATALAY-RGEKARL 266 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcccCHHHHHHH----HHHHHH-CCCHHHH
Confidence 9943 33 566655 777888899999995 66 888888 666666555555544 356665 7777766
Q ss_pred hhhhhchhhHhHH-------------------------------HHHHHH-------HHhcCHHHHHHHHHHHHHhCCCc
Q 000323 1252 KETNLRSAHCFAV-------------------------------NHIWCM-------AVLNGLECSMNLLEKYIKLYPSC 1293 (1669)
Q Consensus 1252 ~~~~~kt~~~fKL-------------------------------N~IR~l-------I~LEDse~A~~LfdklLk~~P~d 1293 (1669)
...=.+...+++. ++.+-. +..+++..+. +++...|.+
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 342 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATLPAN 342 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCCCcc
Confidence 6551122222211 100000 0011333222 345555666
Q ss_pred hhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1294 LELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1294 ~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
.-+.+-.+++...+.--++...|.......|.+.. .=.|+.=.++++|+.++|.++.+..|.
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 54455555543323355777888888888898888 666667789999999999999999665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-15 Score=192.21 Aligned_cols=359 Identities=8% Similarity=-0.033 Sum_probs=242.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------------HHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1089 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------------LwlmY 1089 (1669)
.|+++.|...|.++|+++|+++++|+.++.+|.+.+..+++.++|++|++.+|++.. ++..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999998642 12345
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccch
Q 000323 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1169 (1669)
Q Consensus 1090 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lS 1169 (1669)
+..+ .|++|+..|.++.+.. |+. .+.++.|..+|...|++++|++.+.+... +...+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 5556 7899999999999888 454 67888999999999999999998888775 332222 222
Q ss_pred HHHHHHhhccCCcchh--hHHHH--------------H-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000323 1170 LSDILTCLTISDKLIF--WVCCV--------------Y-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1232 (1669)
Q Consensus 1170 LsKi~~YLt~sDR~~A--WL~~i--------------Y-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1232 (1669)
......|... +...| ++... . .-.| ...+.++...|...+|... +.+.++.+|+++.+
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRL-AQQAEALENQGKWAQAAEL---QRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH-HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHH
Confidence 2222333322 22222 22100 0 0011 1245666677777777777 77777777777777
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH-------------------------------------------------
Q 000323 1233 LIEMAVNSVELYSNGESLEKETNLRSAHCFA------------------------------------------------- 1263 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~~kt~~~fK------------------------------------------------- 1263 (1669)
++.+|.-|+. .|+...+...-.++....|
T Consensus 498 ~~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 7777544443 3444333332111111101
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1264 -VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1264 -LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
+.....+...++.++|+.++. .+|.+..+ ..++..+...+..++|+..|++++..+|+|+. +|+.+++..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~ 647 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 111222233446666666554 68999988 44444445555599999999999999999999 999999999
Q ss_pred HHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHH
Q 000323 1342 LQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1408 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~ 1408 (1669)
...|++++|+..+++ +..+..+.+. +.++|+..+++.....+.......... ++..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~-----------~~~~ 716 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL-----------VLRD 716 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH-----------HHHH
Confidence 999999999999987 2234434333 888899988876443211100000111 1244
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 000323 1409 LNLSLHRLLQNDWNEARLAIDAALK 1433 (1669)
Q Consensus 1409 LGD~L~q~Lqg~~~EAfaAYDKALk 1433 (1669)
++.++.. +|+.++|...|.+||.
T Consensus 717 ~a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHh
Confidence 5677777 9999999999999996
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-13 Score=165.04 Aligned_cols=406 Identities=19% Similarity=0.173 Sum_probs=264.1
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000323 920 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 994 (1669)
Q Consensus 920 ~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~--~~~~d~ri~~~---~~~~~~~rYF~ 994 (1669)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888777889999998774 44444444443322221111 11112222222 33433334333
Q ss_pred cch---hhhhhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000323 995 SRN---GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1071 (1669)
Q Consensus 995 ~~~---d~i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~em 1071 (1669)
.+. =+.+-+.--|+++.+|++.|..- +. ...=.-+|.+|||..|++..+|-.-..+ ..++.+.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE--~~------~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADLE--SD------TKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhhh--hH------HHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 222 11234455567888888877431 11 1334578999999999999999987666 556669999
Q ss_pred HHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000323 1072 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1151 (1669)
Q Consensus 1072 lekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1151 (1669)
+++||+.+|.+..||+-|.+.+ -|+.|..+|...-+.-|.+ -+||+.-..|.-.+|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~iptd--------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREIIPTD--------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999 9999999998777777667 49999999999999999988886
Q ss_pred HHhhcc-cccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHH
Q 000323 1152 ISRLLI-PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1230 (1669)
Q Consensus 1152 l~rLEq-~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna 1230 (1669)
|+|=.. --.+|.. +. + -.||...-..+--. +.--+-.| +
T Consensus 463 i~rgl~~L~~ngv~--------------i~-r-dqWl~eAe~~e~ag----------sv~TcQAI--------------i 502 (913)
T KOG0495|consen 463 IDRGLSELQANGVE--------------IN-R-DQWLKEAEACEDAG----------SVITCQAI--------------I 502 (913)
T ss_pred HHHHHHHHhhccee--------------ec-H-HHHHHHHHHHhhcC----------ChhhHHHH--------------H
Confidence 655332 1122210 00 0 02555443211100 00000000 1
Q ss_pred HHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000323 1231 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1231 lAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
.+.+..+ +-+++-...-......|-|.+ -+++++..|-.+|+.+|..-.|||.++++++.++..
T Consensus 503 ~avigig-------vEeed~~~tw~~da~~~~k~~---------~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 503 RAVIGIG-------VEEEDRKSTWLDDAQSCEKRP---------AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHHHhhc-------cccchhHhHHhhhHHHHHhcc---------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH
Confidence 1222211 011110000012222333333 677888899999999999999999999998888777
Q ss_pred ccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccccchhhhc
Q 000323 1311 LSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLV 1376 (1669)
Q Consensus 1311 ~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLr 1376 (1669)
++. +.|++|+...|+-.- .|++|+..-|..|+...|..|+...|...+.+-. ..++|-+.|.
T Consensus 567 Esl~Allqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777 889999999999888 9999999999999999999999887776665433 5566666666
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1377 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1377 kgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
++-+- ++..- .+|--+-+.|.+++.+||....|.||+.-|+=
T Consensus 643 kar~~---------------sgTeR-----v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 643 KARSI---------------SGTER-----VWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHhcc---------------CCcch-----hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 55221 11222 45666677778899999999999999888864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=169.01 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++.-.++.+.|++|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 347789999999999999996 789999999999999999999999999999999876 677888888 8
Q ss_pred HHHHHHHHHHhh
Q 000323 1103 YDAALSVLCRCA 1114 (1669)
Q Consensus 1103 YdkAI~aLe~la 1114 (1669)
|++|+..|....
T Consensus 210 ~~eA~~~~~~~~ 221 (615)
T TIGR00990 210 YADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999998885443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-13 Score=167.49 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=118.7
Q ss_pred hHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCH---
Q 000323 1200 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGL--- 1276 (1669)
Q Consensus 1200 Gd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDs--- 1276 (1669)
+..+...|...+|... +.+.+..+|+.+.++..+|.-|+. .++.
T Consensus 219 ~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~------------------------------~G~~~eA 265 (656)
T PRK15174 219 VDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ------------------------------SGRSREA 265 (656)
T ss_pred HHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH------------------------------cCCchhh
Confidence 4445555666666666 555666666665555555422322 2222
Q ss_pred -HHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1277 -ECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1277 -e~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
.+|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|.....+.|++++|+..+
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHH
Confidence 25788888889999988888 34444444444478888888999999998888 7888888888888888888877
Q ss_pred HHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1355 DRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1355 ~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
++.... .|. ....+ ..++.+|.+ .|+.++|..+|+++|..
T Consensus 342 ~~al~~-------------------~P~--------~~~~~-----------~~~a~al~~--~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 342 VQLARE-------------------KGV--------TSKWN-----------RYAAAALLQ--AGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHh-------------------Ccc--------chHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHh
Confidence 542220 010 01112 456778888 99999999999999999
Q ss_pred ccC---CcHHHHHHHHHHHHhc
Q 000323 1435 AAS---EHFKHCVREHAMLLLI 1453 (1669)
Q Consensus 1435 np~---N~~i~cLNNYAYFLS~ 1453 (1669)
.|+ ..|..+...|.-++..
T Consensus 382 ~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 382 RASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred ChhhchhhHHHHHHHHHHHHHh
Confidence 885 4556666777766654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=170.84 Aligned_cols=353 Identities=8% Similarity=-0.025 Sum_probs=208.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+.+.|+.++..|+.++|..+.+|..++.+|...+.-.++.+.|++|++++|++.. ++.+++..+ .++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~ 100 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYD 100 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 44567777777777777777777777777777777777777777777777777665 445566666 667
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
+|+..|.++.+.. |+. .+ ++.+..+|...|++++|+..+.++.. ..-.++ ..-+..
T Consensus 101 eA~~~l~~~l~~~-P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~-~~~~~l------------ 156 (765)
T PRK10049 101 EALVKAKQLVSGA-PDK-------AN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQ-QYPTEY------------ 156 (765)
T ss_pred HHHHHHHHHHHhC-CCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHH------------
Confidence 7777777777666 444 45 66677777777777777776666664 111111 111111
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhH--------------------------------HHHHH
Q 000323 1185 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK--------------------------------QRAIK 1232 (1669)
Q Consensus 1185 AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EP--------------------------------dnalA 1232 (1669)
+.++...+..++|+.. +..+.+ .| +.|++
T Consensus 157 ---------------a~~l~~~~~~e~Al~~---l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 157 ---------------VQALRNNRLSAPALGA---IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ---------------HHHHHHCCChHHHHHH---HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 1111122222222222 111111 11 22222
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH---HHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhc
Q 000323 1233 LIEMAVNSVELYSNGESLEKETNLRSAHCFA---VNHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKH 1306 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~~kt~~~fK---LN~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K 1306 (1669)
.++.+...+.. ++.....+. +..+..+...++.++|+..|+++++.. |..+.+++..+|+..+
T Consensus 218 ~~~~ll~~~~~-----------~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 218 QYDALEALWHD-----------NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHhhccc-----------CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 22221111100 011101111 111222334568999999999999996 5555667877888877
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----------------------
Q 000323 1307 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---------------------- 1364 (1669)
Q Consensus 1307 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~---------------------- 1364 (1669)
+ +++|+..|++++...|.+.......+.+|....++.+++++|+.++.+.....+..
T Consensus 287 ~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 287 Q-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred C-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 6 99999999999999998743223456666777789999999999988755443210
Q ss_pred ------ccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1365 ------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1365 ------Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
+.+.++|++++++.....+. ..+.+ ..++.++.. .|+.++|...|++||..+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~-----------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPG------NQGLR-----------IDYASVLQA--RGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH-----------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC
Confidence 11666777777765322111 01211 444555555 788888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1439 HFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1439 ~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
...+-..|+ ..+...++++|+++=.
T Consensus 427 --~~l~~~~a~-~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 427 --INLEVEQAW-TALDLQEWRQMDVLTD 451 (765)
T ss_pred --hHHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 666666666 3444445666666444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-12 Score=157.60 Aligned_cols=351 Identities=12% Similarity=-0.030 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1084 (1669)
...|+.+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|...+.-+++...|..+..+.+.+..
T Consensus 160 ~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 160 PVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45677777766655 56799999999999999999999999999999999988887777665544432211
Q ss_pred -----------------------------HHHHHHhcCC-----------C----cc-------------cchhhHHHHH
Q 000323 1085 -----------------------------LWLMYINSRT-----------P----LN-------------HRLDAYDAAL 1107 (1669)
Q Consensus 1085 -----------------------------LwlmYInsr~-----------s----ld-------------drl~~YdkAI 1107 (1669)
++.++...+. . +. .....|++|+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 1111100000 0 00 0012578888
Q ss_pred HHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000323 1108 SVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1108 ~aLe~las~~--~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1185 (1669)
.+|.++.... .+.. ...+..+..+|...|++++|+..+.+... ..|. .. .+
T Consensus 315 ~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~--------------~~ 367 (615)
T TIGR00990 315 RAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT--------------QS 367 (615)
T ss_pred HHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH--------------HH
Confidence 8888877643 1232 56778888899999999999997776664 2331 00 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH-
Q 000323 1186 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV- 1264 (1669)
Q Consensus 1186 WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL- 1264 (1669)
| ...|.++...|...+|... +.++++.+|+++.+++.+|.-|+. .|+-+.+.....++....|-
T Consensus 368 ~----------~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 368 Y----------IKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred H----------HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCccC
Confidence 1 1234555666777777777 667777777777777666533332 33333333222222111111
Q ss_pred -----HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH-HhhcccCCccHHHHHHHHHhCCCCCchHH--HHHHH
Q 000323 1265 -----NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQ--CIWNQ 1336 (1669)
Q Consensus 1265 -----N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~--caW~Q 1336 (1669)
++...+..+++.+.|+.+|+++++..|.+.+++...+. +...+..++|+..|++|+.++|++.+.+. ..|..
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 11111222456666666666666666666666222222 22222255666666666666666544111 11111
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHH
Q 000323 1337 YV-EYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1415 (1669)
Q Consensus 1337 LI-q~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q 1415 (1669)
.+ .+....+++++|+.++++.+. ..+ +. ...+..||.++++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~-------------------l~p-----------~~--------~~a~~~la~~~~~ 554 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALI-------------------IDP-----------EC--------DIAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-------------------cCC-----------Cc--------HHHHHHHHHHHHH
Confidence 11 111123555555555544211 011 00 0122567778888
Q ss_pred hhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000323 1416 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1449 (1669)
Q Consensus 1416 ~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1449 (1669)
.|+++||..+|++|++..+.. ...++.+.|
T Consensus 555 --~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 555 --QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred --ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 999999999999999988865 444444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-12 Score=158.36 Aligned_cols=358 Identities=9% Similarity=0.015 Sum_probs=249.3
Q ss_pred ccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000323 1006 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1084 (1669)
Q Consensus 1006 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~- 1084 (1669)
.+...+.|..+|..+.+.+ +++.|+.+|..+|+.+|.++.+|+.++.++...+...++.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLK-----QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3455577888888887775 4699999999999999999999999999999999999999999999999999976
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
++.+|...+ .+++|+.+|+++.+.. |+. .++++.+..++...|..++|+..++++.. ...
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~ 181 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANL--TPA 181 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHH
Confidence 566677777 8899999999999998 666 88989999999999999999998877664 100
Q ss_pred C---CcccchHHHHHHhhccCCcc--------hh-----hHHHH-------H--HHHhhcc-chHHHhhhhhhhhhhccC
Q 000323 1163 N---DRHSLFLSDILTCLTISDKL--------IF-----WVCCV-------Y--LVIYRKL-PDAVLQLLECEKELFAID 1216 (1669)
Q Consensus 1163 ~---sE~~lSLsKi~~YLt~sDR~--------~A-----WL~~i-------Y--llrYrvL-PGd~y~q~e~~KEAf~I~ 1216 (1669)
. .+.......++.++...... .| .+... + ....+.. .+.+ ...+..++|...
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~- 259 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE- 259 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH-
Confidence 0 00001223344444332210 01 11111 0 1111111 3334 455788889888
Q ss_pred CCCcccchhh---HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh----------HhHHHHHHHHHHhcCHHHHHHHH
Q 000323 1217 WPPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH----------CFAVNHIWCMAVLNGLECSMNLL 1283 (1669)
Q Consensus 1217 W~y~~vlk~E---PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~----------~fKLN~IR~lI~LEDse~A~~Lf 1283 (1669)
|..+++.. |+.+...+ | ++|-. .++.+.+...-.++.. .....+...+...++.++|+.++
T Consensus 260 --~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 260 --YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred --HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888774 66655543 3 33333 5666655554222211 11112222333467999999999
Q ss_pred HHHHHhCCCch---------------hH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1284 EKYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1284 dklLk~~P~d~---------------eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
+++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......|++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWP 409 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCH
Confidence 99999987432 23 44555555555689999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|+.++++ ++.. .|- ..+++ -.++..+.. .|++++|...
T Consensus 410 ~~A~~~l~~--------------al~l-----~Pd--------~~~l~-----------~~~a~~al~--~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKK--------------AEVL-----EPR--------NINLE-----------VEQAWTALD--LQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHH--------------HHhh-----CCC--------ChHHH-----------HHHHHHHHH--hCCHHHHHHH
Confidence 999998865 1111 010 11222 344445555 8999999999
Q ss_pred HHHHHhhccCC
Q 000323 1428 IDAALKAAASE 1438 (1669)
Q Consensus 1428 YDKALkanp~N 1438 (1669)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-12 Score=158.37 Aligned_cols=209 Identities=8% Similarity=-0.105 Sum_probs=148.6
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.|.+.|...+.+-.++...+. .|+++.|+..|.++++++|+++.+|+.++.+|.+.+...++.+.|++|++++|+
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~-----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLA-----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhh-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455556666777666655553 367899999999999999999999999999999999999999999999999999
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1082 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1082 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.. +...|...+ .+++|+.+|..+.... |+. .+.+..++ .+...|++++|+..+.++..
T Consensus 143 ~~~a~~~la~~l~~~g--------~~~eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 143 NSQIFALHLRTLVLMD--------KELQAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred cHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 987 445666667 8899999999888877 454 44444443 36788999999999888765
Q ss_pred cccCCCCcccchHHHHHHhhccCCcchh--hHHH---HH--HHHhhccchHHHhhhhhhhh----hhccCCCCcccchhh
Q 000323 1158 PATGSNDRHSLFLSDILTCLTISDKLIF--WVCC---VY--LVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDE 1226 (1669)
Q Consensus 1158 ~Al~g~sE~~lSLsKi~~YLt~sDR~~A--WL~~---iY--llrYrvLPGd~y~q~e~~KE----Af~I~W~y~~vlk~E 1226 (1669)
..-.. .+ .........+...++...| .+.. .+ .......+|..|...|...+ |... +.++++.+
T Consensus 206 ~~~~~-~~-~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~ 280 (656)
T PRK15174 206 FFALE-RQ-ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFN 280 (656)
T ss_pred cCCCc-ch-hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhC
Confidence 21111 11 1112223455555655444 1111 11 33344557888888887765 6777 77777778
Q ss_pred HHHHHHHHHHH
Q 000323 1227 KQRAIKLIEMA 1237 (1669)
Q Consensus 1227 PdnalAL~smA 1237 (1669)
|+++.++..+|
T Consensus 281 P~~~~a~~~lg 291 (656)
T PRK15174 281 SDNVRIVTLYA 291 (656)
T ss_pred CCCHHHHHHHH
Confidence 87777776664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=139.50 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC--------
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1082 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N-------- 1082 (1669)
..+.-.+..++.. |+++.|+.+|.++++.+|.++.+|+.++.+|...+...++..+++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4444445555444 456899999999999999999999999999999999999999999999864322
Q ss_pred HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1083 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1083 Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
+.|+.+|...+ .|++|+.+|.++.... +.. .+.+..++.+|...|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12788888888 8999999999988766 444 68899999999999999999998887764 111
Q ss_pred CCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000323 1163 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1163 ~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1242 (1669)
... .. . ...|....+..+...+...+|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~---------------~~---~-----~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL---------------RV---E-----IAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc---------------hH---H-----HHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 110 00 0 111122356666777777788777 7777777777777776665 4443
Q ss_pred hhcCCcchhhhhhhchhhHhHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHH
Q 000323 1243 LYSNGESLEKETNLRSAHCFAV-------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1315 (1669)
Q Consensus 1243 ~~~ndesla~~~~~kt~~~fKL-------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~sv 1315 (1669)
. .|+...+...-.++...-|- .++..+...++.++|+.+|.++++..|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 45444444432222221111 223444457799999999999999999875554444444444458899999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhh
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVW 1362 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~---~en~d~Ai~Lc~~ff~gia 1362 (1669)
|++++...|++.. +..++...+. .|+.++++.++++.+....
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9999999999876 3344444442 4588899999988765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-10 Score=146.70 Aligned_cols=383 Identities=13% Similarity=0.012 Sum_probs=238.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--H--HHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--L--wlmYInsr~slddrl~~Y 1103 (1669)
-|+++.|++.|.+||+++|+++.+.+.++.++...++..++..+|++|+.-.|.++. + +..|.+.+ .|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CH
Confidence 377899999999999999999755449999999999999999999999955555565 4 56999999 99
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhc---cC
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---IS 1180 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt---~s 1180 (1669)
++|+++|+++.+.. |+. .++++.++.+|...|++++|+..+.++++ ..+ ......++.|+. .+
T Consensus 119 d~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp----~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 119 DQALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDP----TVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCc----chHHHHHHHHHHHhcch
Confidence 99999999999999 666 89999999999999999999999999997 333 233446666766 22
Q ss_pred Ccchh----hHHHHH--HHHhhccchHHHhhhhhhhhhhccCCCCcccc------hhhHHHHHHHHHHHHHHHhhhcC--
Q 000323 1181 DKLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSN-- 1246 (1669)
Q Consensus 1181 DR~~A----WL~~iY--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vl------k~EPdnalAL~smA~dYY~~~~n-- 1246 (1669)
....+ .+...+ ...+-...-..+-.+|-..-|+.+-+.+..+. -.+-+.+..++..|. .... ..
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~-~~~~-~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV-LPTR-SETE 262 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc-cccc-cchh
Confidence 21111 222222 11221111222333333333332222222111 111122222222110 0000 00
Q ss_pred -----Ccchhhhh-----hhchhhHhHH------HHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhcc
Q 000323 1247 -----GESLEKET-----NLRSAHCFAV------NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKHD 1307 (1669)
Q Consensus 1247 -----desla~~~-----~~kt~~~fKL------N~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K~ 1307 (1669)
|..++..+ -.+.+...+. -.|--+...++...|+..|+.+-... |.-+.-++..+||..+.
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 00000000 0011111111 11222223669999999999998554 77777799999998887
Q ss_pred cCCccHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000323 1308 FGDLSSVGFEEALIKWPKGVP--GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1308 m~~~A~svle~AL~~~PkNa~--g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1385 (1669)
|++|..+|.+++...|...+ .-...-.-|.--.++.+++++|..++.+.....++ + +..+ .++..+
T Consensus 343 -P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~------~~~~-~~~~~~--- 410 (822)
T PRK14574 343 -PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q------VGVY-GLPGKE--- 410 (822)
T ss_pred -cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E------Eecc-CCCCCC---
Confidence 99999999999998753211 00111234566688999999999999886442221 0 0000 112221
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
-+.|.. + ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 ----pn~d~~-----~-----~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 ----PNDDWI-----E-----GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred ----CCccHH-----H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234422 2 23333333344899999999999999999999 9999999998877664 444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-11 Score=142.60 Aligned_cols=381 Identities=15% Similarity=0.090 Sum_probs=270.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1103 (1669)
.|+++.|+.+|..++|+.|+.+++|..++..+...+..+.+.+.|..|++++|++|- +..+--.. ||+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~-----Grl--- 200 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE-----GRL--- 200 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh-----ccc---
Confidence 467899999999999999999999999999999999999999999999999999998 44332222 334
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1183 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1183 (1669)
++|-..|-++.... |.- -=+|--|--++..+|++.-||+.++.-.. ..|+
T Consensus 201 ~ea~~cYlkAi~~q-p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~----------------- 250 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ-PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN----------------- 250 (966)
T ss_pred chhHHHHHHHHhhC-Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc-----------------
Confidence 56666665555544 331 22455677788899999999996644332 2331
Q ss_pred hhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh---
Q 000323 1184 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH--- 1260 (1669)
Q Consensus 1184 ~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~--- 1260 (1669)
|.-.|-. +|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...++++..
T Consensus 251 -------f~dAYiN-LGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 251 -------FLDAYIN-LGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQP 317 (966)
T ss_pred -------chHHHhh-HHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcCC
Confidence 3333545 58888888888999999 999999999999999999888998 4788888888766653
Q ss_pred HhHH--HHHHHH-HHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHH
Q 000323 1261 CFAV--NHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN 1335 (1669)
Q Consensus 1261 ~fKL--N~IR~l-I~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~ 1335 (1669)
.||. |-|... -..++.++|...|.++|.+||.-++- -|.-.|.+..+ -++|...|+.||+..|.=+. +.+
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~n 392 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AHN 392 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hhh
Confidence 4444 213333 33779999999999999999999998 67777766664 88999999999999999998 999
Q ss_pred HHHHHHHHcCChHHHHHHHHH-------HHHhhhhccc------ccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000323 1336 QYVEYALQNGRHDFAAELMDR-------WFHSVWKVQY------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1402 (1669)
Q Consensus 1336 QLIq~al~~en~d~Ai~Lc~~-------ff~gia~~Q~------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~ 1402 (1669)
-|.-...++|++++|+.--++ |-.+....+. +-.+|+.-+-+.. ++ ++.+ .|-
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeA-------- 458 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEA-------- 458 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHH--------
Confidence 999999999999999876655 3333333322 4444544443330 01 1111 221
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccc
Q 000323 1403 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLP 1482 (1669)
Q Consensus 1403 d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf 1482 (1669)
|+=|+-++-- .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+..| -++.|-..+.+|.+-|. -|.||
T Consensus 459 ---hsNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D--~d~~~~kl~sivrdql~-~~rlp 530 (966)
T KOG4626|consen 459 ---HSNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD--YDKRMKKLVSIVRDQLE-KNRLP 530 (966)
T ss_pred ---HhhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHh-hhcCC
Confidence 2455666666 8999999999999999999521144444444444455543 34444432233333331 26666
Q ss_pred cccc
Q 000323 1483 YLKL 1486 (1669)
Q Consensus 1483 ~~~~ 1486 (1669)
.--|
T Consensus 531 svhP 534 (966)
T KOG4626|consen 531 SVHP 534 (966)
T ss_pred ccCc
Confidence 6555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-09 Score=121.69 Aligned_cols=470 Identities=17% Similarity=0.160 Sum_probs=334.0
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
-+|...-++.+.||++|.--..|.. +.-|.+++.|||+.+-.+..+|..|+.+.++.+..+.+...+.+||..=|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e-----~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKE-----IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 3777777889999999988877754 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1081 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1081 ~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
.-..||.-|+-.+-+|+ +-..|+++|++-..-. || ...|+..+++....++++-|...+.|..-
T Consensus 139 RVdqlWyKY~ymEE~Lg----Ni~gaRqiferW~~w~-P~--------eqaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLG----NIAGARQIFERWMEWE-PD--------EQAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHcCC-Cc--------HHHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 99999999998775555 6699999999988887 77 68999999999999999999998877774
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHH
Q 000323 1161 GSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVN 1239 (1669)
Q Consensus 1161 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~d 1239 (1669)
+.| +-..|+.+.- +.+.+.. .++..+++.|++
T Consensus 203 --~HP----------------~v~~wikyarFE~k~g~~-----------------------------~~aR~VyerAie 235 (677)
T KOG1915|consen 203 --VHP----------------KVSNWIKYARFEEKHGNV-----------------------------ALARSVYERAIE 235 (677)
T ss_pred --ecc----------------cHHHHHHHHHHHHhcCcH-----------------------------HHHHHHHHHHHH
Confidence 444 2225887764 5555544 678888888877
Q ss_pred HHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH--hhcccCC----ccH
Q 000323 1240 SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL--QKHDFGD----LSS 1313 (1669)
Q Consensus 1240 YY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL--~~K~m~~----~A~ 1313 (1669)
+... +..+. .+-.-|+. +-......+.|+-+|.-++..-|.+-.-.|+..|+ +++-+.. +++
T Consensus 236 ~~~~----d~~~e----~lfvaFA~----fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 236 FLGD----DEEAE----ILFVAFAE----FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred Hhhh----HHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7752 22111 11111211 11223378899999999999999998777888776 3443322 222
Q ss_pred -----HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCC
Q 000323 1314 -----VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPEST 1387 (1669)
Q Consensus 1314 -----svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~ 1387 (1669)
..|+..+..+|-|.. .|.-|+.+.=..|+-+.+.++-++ .|+.+.. .....-
T Consensus 304 v~KRk~qYE~~v~~np~nYD----sWfdylrL~e~~g~~~~Ire~yEr---AIanvpp~~ekr~W--------------- 361 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYD----SWFDYLRLEESVGDKDRIRETYER---AIANVPPASEKRYW--------------- 361 (677)
T ss_pred hhhhhhHHHHHHHhCCCCch----HHHHHHHHHHhcCCHHHHHHHHHH---HHccCCchhHHHHH---------------
Confidence 579999999999999 999999999999999999888766 3333322 000000
Q ss_pred CCCCcccccccccchhhHHHHHHH--HHH-HhhhcCHHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCccc
Q 000323 1388 STSDPEFSVSNRNQMDVMFGYLNL--SLH-RLLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGA 1462 (1669)
Q Consensus 1388 s~~vSDfy~~~~~Q~d~~fa~LGD--~L~-q~Lqg~~~EAfaAYDKALkanp~--N~~i~cLNNYAYFLS~e~~dL~KAe 1462 (1669)
--| .|||+ ++| .+.-.+.+.+...|..||+.=|- =.|--.|-=||.|.- ...+|.+|-
T Consensus 362 -----~RY-----------IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~AR 424 (677)
T KOG1915|consen 362 -----RRY-----------IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGAR 424 (677)
T ss_pred -----HHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHH
Confidence 013 45555 444 45567888899999999999993 456788999999975 344566655
Q ss_pred chhhhHHHHHHHHhhhcccccccc-cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccch
Q 000323 1463 PISWQLKLLNSYLDRARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDL 1541 (1669)
Q Consensus 1463 qMS~~~KtVsTYLDTAWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi 1541 (1669)
++=. +.| -.| .+. +=|.|| +++..|.-... -
T Consensus 425 kiLG--~AI----G~c-----PK~KlFk~YI------------------------elElqL~efDR-------------c 456 (677)
T KOG1915|consen 425 KILG--NAI----GKC-----PKDKLFKGYI------------------------ELELQLREFDR-------------C 456 (677)
T ss_pred HHHH--HHh----ccC-----CchhHHHHHH------------------------HHHHHHhhHHH-------------H
Confidence 4222 111 000 111 335566 23333332210 1
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHH
Q 000323 1542 VDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEE 1621 (1669)
Q Consensus 1542 ~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~ 1621 (1669)
...-|+++|.-|.|-.-=+..+-|...- +-..- |..+.-=||.+-.--.||-+|.--+++.=.....+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~L-------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSL-------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHh-------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 2356777888888877666555544321 11111 222222344443445799999999999888887666
Q ss_pred HHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000323 1622 ISERFFKRALSVYPFSIKLWKCYYDLSKT 1650 (1669)
Q Consensus 1622 i~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1650 (1669)
- +-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 526 a-R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 526 A-RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred H-HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 5 999999998877765 99999999983
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-10 Score=143.95 Aligned_cols=187 Identities=6% Similarity=-0.057 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1353 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1353 (1669)
+.++|+..|.+++...|.+.. .|..++. ...+..++|+..|++++...|.+ . .|.++...+++.|++++|+..
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHH
Confidence 344677777777777776544 3333332 23333667777777776665553 3 467777788888888888888
Q ss_pred HHHH----------HHhhhhcc---cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1354 MDRW----------FHSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1354 c~~f----------f~gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++. +..++... .+.++|+..+++....- +. .+.| .-+|.++.+ .|+
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-----P~--~~a~-----------~~LA~~l~~--lG~ 624 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-----PS--ANAY-----------VARATIYRQ--RHN 624 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CC--HHHH-----------HHHHHHHHH--CCC
Confidence 8761 11223233 47888888888764331 11 3444 567778888 999
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhh
Q 000323 1421 WNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQF 1491 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~--lARiY 1491 (1669)
.++|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 625 VPAAVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999 899999999988765 4666666444 555 455555 999999999 88888
Q ss_pred h
Q 000323 1492 I 1492 (1669)
Q Consensus 1492 I 1492 (1669)
+
T Consensus 700 l 700 (987)
T PRK09782 700 A 700 (987)
T ss_pred H
Confidence 8
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-12 Score=143.52 Aligned_cols=260 Identities=16% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1089 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrAL-EI-NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1089 (1669)
..|.+|..++.. |++++|+.+|...+ .+ .|++++.|..++.+....+....+.++|++.++.++.+......+
T Consensus 10 ~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l 84 (280)
T PF13429_consen 10 EALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445667777655 55699999996554 55 599999999999999999999999999999999988766522222
Q ss_pred ---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000323 1090 ---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166 (1669)
Q Consensus 1090 ---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~ 1166 (1669)
+..+ .|++|+.+++.....+ ++ .+.|..++++|...|+++++...|..++. ...
T Consensus 85 ~~l~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~---- 141 (280)
T PF13429_consen 85 IQLLQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPA---- 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T-----
T ss_pred ccccccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccC----
Confidence 3344 7899999998888776 45 57788899999999999999998888774 111
Q ss_pred cchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcC
Q 000323 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1246 (1669)
Q Consensus 1167 ~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~n 1246 (1669)
..+. ..|-.+.|.++.+.|..++|..+ +.++++.+|++..++..+
T Consensus 142 ------------~~~~----------~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l---------- 186 (280)
T PF13429_consen 142 ------------APDS----------ARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNAL---------- 186 (280)
T ss_dssp --------------T-----------HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHH----------
T ss_pred ------------CCCC----------HHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHH----------
Confidence 0111 22333467788889999999999 888899899888877665
Q ss_pred CcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCC
Q 000323 1247 GESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWP 1324 (1669)
Q Consensus 1247 desla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~P 1324 (1669)
+..+|..++.++++.++..+.+..|.+..+ .+..+|+..++ +++|+..|++++..+|
T Consensus 187 --------------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 187 --------------------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNP 245 (280)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHST
T ss_pred --------------------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccc
Confidence 334455667777888999999999999999 67777777665 9999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1325 KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1325 kNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
+++. ....|+......|+.++|.++-++.+.
T Consensus 246 ~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPL----WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HH----HHHHHHHHHT-----------------
T ss_pred cccc----ccccccccccccccccccccccccccc
Confidence 9999 888999999999999999999877544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=136.47 Aligned_cols=463 Identities=14% Similarity=0.137 Sum_probs=291.0
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC-------
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1079 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln------- 1079 (1669)
|..+...+-|+.-.+++. .++.|+.|+.+|.+|..+||.+|.+..+|+.+|+..++-+.+....++|+...
T Consensus 230 p~~v~alv~L~~~~l~~~--d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFN--DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 367777777777666664 45889999999999999999999999999999999999999999999998766
Q ss_pred CCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000323 1080 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1159 (1669)
Q Consensus 1080 P~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~A 1159 (1669)
...||++-+|=.++ +|++|-..|.+..... ++. . +=.++=+.|.|...|+++.++.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23567999999999 9999999998877776 442 1 22456789999999999999998888875
Q ss_pred cCCCCcccchHHHHHHhhccCC-c--chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCccc-chhhHHHHHHHHH
Q 000323 1160 TGSNDRHSLFLSDILTCLTISD-K--LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1235 (1669)
Q Consensus 1160 l~g~sE~~lSLsKi~~YLt~sD-R--~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~v-lk~EPdnalAL~s 1235 (1669)
. .|...-.-+|.-||-... + .+...+-.| .|...-+.-+.-++|.. ..++ ...||--.+-.+.
T Consensus 371 ~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 Q---LPNNYETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred h---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 2 221111223443332222 1 111222222 23333333344444332 2222 3456666677777
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHHH-hcCHHHHHHHHHHHHHhCC-----Cc---hhH---HHHH
Q 000323 1236 MAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMAV-LNGLECSMNLLEKYIKLYP-----SC---LEL---VLMK 1300 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI~-LEDse~A~~LfdklLk~~P-----~d---~eL---~L~A 1300 (1669)
+|.+.+.. .+. + +|. |-+..+.. ++..+.|...|+.++..+- +. +.| -..|
T Consensus 438 ~A~d~L~~-~~~------------~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 438 NALDILES-KGK------------Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHH-cCC------------C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 77666653 221 1 444 22444433 7788999999998887722 21 223 3344
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc--
Q 000323 1301 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-- 1366 (1669)
Q Consensus 1301 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-- 1366 (1669)
..++.-++.+.|-..|..++...|.-.. ++.-|.-++..+++..+|+.+++. -|.|.++..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 4455555677888999999998887666 666777778888888888888887 4445444444
Q ss_pred ---ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH------HHHHhhh------cCHHHHHHHHHHH
Q 000323 1367 ---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL------SLHRLLQ------NDWNEARLAIDAA 1431 (1669)
Q Consensus 1367 ---~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD------~L~q~Lq------g~~~EAfaAYDKA 1431 (1669)
-+....-+++++... .|-| ++|++ .+|+|-. +..++|+..|.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~----------~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTK----------TDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred hcccccHHHHHHhhhccC----------Cchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 222222233322111 6778 55555 3333333 3478899999999
Q ss_pred HhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH--------HHHHhhhcccccccccchhhhccccchhhHHH
Q 000323 1432 LKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL--------NSYLDRARSLPYLKLLPRQFINNIERPRLQQL 1503 (1669)
Q Consensus 1432 Lkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV--------sTYLDTAWILf~~~~lARiYI~~i~k~rv~~l 1503 (1669)
|.-+|.| +.|=|=-+--|+..+. +.+|-. .|.-| .+||+-|-+++.++ .|+. --|.
T Consensus 639 L~~dpkN--~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqm 702 (1018)
T KOG2002|consen 639 LRNDPKN--MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQM 702 (1018)
T ss_pred HhcCcch--hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHH
Confidence 9999999 8888888888887664 666655 44333 22333344555553 3331 1122
Q ss_pred HhhhcCCC--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000323 1504 IDNLLSPV--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1563 (1669)
Q Consensus 1504 iDqaL~~~--S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~ 1563 (1669)
-++.|+.. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 23444441 2223333334445642211 12234666777899999988665444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=125.09 Aligned_cols=274 Identities=14% Similarity=0.098 Sum_probs=191.0
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~lY~~~~~~eea~emlekAVeln 1079 (1669)
+..+.+.+.|..+|..+... |+++.|+.++..+++..+.. ..+|+.++.+|...+....+...|+++++.+
T Consensus 63 ~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG 137 (389)
T ss_pred hcCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 33456678888888888766 45699999999999864433 3688999999999999999999999999998
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1080 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1080 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
|.+.. ++.+|...+ .|++|++.|..+.... +.. ....+..++..+..+|...|++++|+..+.++
T Consensus 138 ~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred cchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 87765 677888888 8999999999988766 332 11233445678889999999999999988777
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHH-HHH
Q 000323 1156 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLI 1234 (1669)
Q Consensus 1156 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnal-AL~ 1234 (1669)
.. ..|. + .....+++.+|...|..++|..+ +.++++.+|++.. ++.
T Consensus 207 l~-----~~p~--------------~-----------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 207 LA-----ADPQ--------------C-----------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLP 253 (389)
T ss_pred Hh-----HCcC--------------C-----------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHH
Confidence 64 1221 0 00112367778888888888888 8888887887643 333
Q ss_pred HHHHHHHhhhcCCcchhhhhhhch-----hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcc-
Q 000323 1235 EMAVNSVELYSNGESLEKETNLRS-----AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD- 1307 (1669)
Q Consensus 1235 smA~dYY~~~~ndesla~~~~~kt-----~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~- 1307 (1669)
.++ ..|.. .|+.+.+...-.++ ....-+.....+...++.++|+.+|.++++..|++..+ .++..++...+
T Consensus 254 ~l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 443 33333 44444443331111 11111333444455779999999999999999999998 56666664432
Q ss_pred -cCCccHHHHHHHHHhCCCCCc
Q 000323 1308 -FGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1308 -m~~~A~svle~AL~~~PkNa~ 1328 (1669)
...+++.+|++.+..-.+..|
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCC
Confidence 366788888877754433334
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-08 Score=122.54 Aligned_cols=574 Identities=15% Similarity=0.145 Sum_probs=314.1
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1088 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1088 (1669)
+.+..|-.|.....+ |+++.|.-++.-++..+|.++++|+.|+.+|-++|.-+.+....-.|.-++|.++.+|-.
T Consensus 138 ~l~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 456777777776666 567999999999999999999999999999999998888899999999999999998855
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC--cc
Q 000323 1089 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND--RH 1166 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s--E~ 1166 (1669)
....-..++ .++.|+-.|-++.+.+ |+. -..++-.+.||..+|.+..|..+.-+|++ ..+.. ++
T Consensus 213 ladls~~~~----~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er 278 (895)
T KOG2076|consen 213 LADLSEQLG----NINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIER 278 (895)
T ss_pred HHHHHHhcc----cHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHH
Confidence 444332333 7899999999999999 454 78999999999999999999999999998 44311 11
Q ss_pred --cchHHHHHHhhccCCcchhhHH-HHHHH----Hh----hccchHHHhhhhh---------------------------
Q 000323 1167 --SLFLSDILTCLTISDKLIFWVC-CVYLV----IY----RKLPDAVLQLLEC--------------------------- 1208 (1669)
Q Consensus 1167 --~lSLsKi~~YLt~sDR~~AWL~-~iYll----rY----rvLPGd~y~q~e~--------------------------- 1208 (1669)
++---.++.|.+.+++..||=+ .-|.. ++ -.+...+|+-+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1222236678888888666211 01100 00 0112222222221
Q ss_pred -------------hhhhhccCC-C----Ccccchhh---------------HHHHHHHHHHHHHHHhhhcCCcchhhhh-
Q 000323 1209 -------------EKELFAIDW-P----PVQLEDDE---------------KQRAIKLIEMAVNSVELYSNGESLEKET- 1254 (1669)
Q Consensus 1209 -------------~KEAf~I~W-~----y~~vlk~E---------------PdnalAL~smA~dYY~~~~ndesla~~~- 1254 (1669)
++..+.|+= + ..++-..+ |+...-|+-..++.|.. .+.-..+-..
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 111122211 0 00111111 21111121111232321 1111111111
Q ss_pred ----hhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000323 1255 ----NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1326 (1669)
Q Consensus 1255 ----~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1326 (1669)
+....+..-+ .+.+||..++.-+.|+..|.++|...|.+.+. .|.+.| +..+.+++|..+++..+.-+|++
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhcccCCCccc
Confidence 2222333222 56799888889999999999999999999999 444444 44444999999999888555555
Q ss_pred CchHHHHHHH-------HHHHHHHcCChHHHHHHHHH----HHHhhhhccc-ccccchhhhc--------------ccCC
Q 000323 1327 VPGIQCIWNQ-------YVEYALQNGRHDFAAELMDR----WFHSVWKVQY-SQVEISDPLV--------------ADMS 1380 (1669)
Q Consensus 1327 a~g~~caW~Q-------LIq~al~~en~d~Ai~Lc~~----ff~gia~~Q~-~~deALDaLr--------------kgns 1380 (1669)
++ .|+|.+ +.......|+.++=+.+... |+.-..-.+. ++.+..-..+ .+..
T Consensus 517 ~e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 517 AE--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred hh--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 55 444433 34455566676665555544 2221111111 0111111111 0000
Q ss_pred CCCC-------CCCCC--CCcccccccccchhhH---HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC--CcHHH-HHH
Q 000323 1381 HSSP-------ESTST--SDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVR 1445 (1669)
Q Consensus 1381 ~i~~-------es~s~--~vSDfy~~~~~Q~d~~---fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~--N~~i~-cLN 1445 (1669)
..+. -.+.. ..+++- .-.+|-. |.-+=++|.. .++++||......|+.+.-. -.-+- -|.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 0000 00110 001110 0112222 3333447777 99999999999999988772 11133 444
Q ss_pred HHHHHHhcCCCCCCcccchhhhHHHH-H---HHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhh
Q 000323 1446 EHAMLLLINESEPKEGAPISWQLKLL-N---SYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSL 1517 (1669)
Q Consensus 1446 NYAYFLS~e~~dL~KAeqMS~~~KtV-s---TYLDT----AWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dss~ 1517 (1669)
.-.++.++...+-..|.. + ++-+ . -|+|+ .|.| --..+++.+..-+..-||-.++.+...++
T Consensus 670 ~~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~-- 739 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT-- 739 (895)
T ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC--
Confidence 444555565555555543 2 3322 2 24554 5775 11333334444444444444554433221
Q ss_pred HHHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHH
Q 000323 1518 VNLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWA 1586 (1669)
Q Consensus 1518 ~nkALE~W~g~-slLpqKI~~kKyi~dfVE~ime~~P~Ny----~Lal~v~k------ll~k~~~~~~~d~~s~~~~fwA 1586 (1669)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- .+.+|+. -+++
T Consensus 740 --~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG 803 (895)
T KOG2076|consen 740 --PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQG 803 (895)
T ss_pred --cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHH
Confidence 122222111 0111111 111122223445677744 44444332 2333333 4566
Q ss_pred hhhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000323 1587 SSSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1639 (1669)
Q Consensus 1587 ~s~l--~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~ 1639 (1669)
.++| +.-+..+- -.-|.... -|-..++ .|+..++..||.+||.++|.+..
T Consensus 804 ~afL~RY~~lR~~~-~~QEa~YN-igRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 804 FAFLKRYKELRRCE-EKQEAFYN-IGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHHhhccH-HHHHHHHH-HHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 6677 67765111 11233333 3344444 58899999999999999998753
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=150.43 Aligned_cols=145 Identities=7% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCC
Q 000323 1319 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1319 AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~e 1385 (1669)
+....|.|.. +|.|||..+.+.+++++|+++|++ ||.|+-+++. +.+.+.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4566788888 999999999999999999999999 8888866666 44444333 233333445
Q ss_pred CCCCCCcccccccccchhhHHHHH--HHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYL--NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~L--GD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
.+..+++++|.+--.--+--+++. ++||=+ .|+.+||+++||++|+++|.| .+||||||||++.. +|+||.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk--~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAK--LNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh--hHHHHHH
Confidence 555677877711111001111222 224444 599999999999999999999 99999999999999 9999999
Q ss_pred hhhhHHHHHHHHhh
Q 000323 1464 ISWQLKLLNSYLDR 1477 (1669)
Q Consensus 1464 MS~~~KtVsTYLDT 1477 (1669)
|+. |+|.+|+|+
T Consensus 171 m~~--KAV~~~i~~ 182 (906)
T PRK14720 171 YLK--KAIYRFIKK 182 (906)
T ss_pred HHH--HHHHHHHhh
Confidence 999 999999997
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-08 Score=118.92 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=199.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY-~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
.|+++.|..++.++-+.. +.+.++|.++... .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 488999996666655442 2377777775555 7888889999999999999999864 367999999
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1181 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1181 (1669)
.|+.|+..|+++.+.. |+. .+++..+.++|.+.|+++.|+.++.+|.. ....++
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~---------------- 221 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDE---------------- 221 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCH----------------
Confidence 9999999999999998 666 89999999999999999999999988886 111111
Q ss_pred cchhhHH-HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000323 1182 KLIFWVC-CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1260 (1669)
Q Consensus 1182 R~~AWL~-~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1260 (1669)
....-+. ..| ..+....... ...+++.=-|. .+.+..|++ .
T Consensus 222 ~~~~~l~~~a~----~~l~~~~~~~--~~~~~l~~~w~--~lp~~~~~~------------------------------~ 263 (398)
T PRK10747 222 EHRAMLEQQAW----IGLMDQAMAD--QGSEGLKRWWK--NQSRKTRHQ------------------------------V 263 (398)
T ss_pred HHHHHHHHHHH----HHHHHHHHHh--cCHHHHHHHHH--hCCHHHhCC------------------------------H
Confidence 0000000 011 1110000000 00111110000 011111111 2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1261 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1261 ~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
..-+.+.+.++..++.++|..++.+.++. |.+.++.+...++...+ +.+++..++..+...|+++. .+..+.+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl 337 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Confidence 22233456667788999999999999995 55778866666665544 78899999999999999999 77788999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++.++|++|....++.. . ..| | +..+..|+.++-+ .|+
T Consensus 338 ~~~~~~~~~A~~~le~al-----------------~--~~P-----------~---------~~~~~~La~~~~~--~g~ 376 (398)
T PRK10747 338 LMKHGEWQEASLAFRAAL-----------------K--QRP-----------D---------AYDYAWLADALDR--LHK 376 (398)
T ss_pred HHHCCCHHHHHHHHHHHH-----------------h--cCC-----------C---------HHHHHHHHHHHHH--cCC
Confidence 999999999998886511 1 011 0 1123688888888 999
Q ss_pred HHHHHHHHHHHHhhc
Q 000323 1421 WNEARLAIDAALKAA 1435 (1669)
Q Consensus 1421 ~~EAfaAYDKALkan 1435 (1669)
.++|...|.++|...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-09 Score=133.54 Aligned_cols=317 Identities=14% Similarity=0.049 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYI 1090 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmYI 1090 (1669)
.-+-+|..+.++ |+|+.|+.+|.++|+.+|+++++++.++.+|...++.+++.+.++++++.+|.+.. +.+.|+
T Consensus 104 ~llalA~ly~~~-----gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 104 GLASAARAYRNE-----KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 333334455554 55799999999999999999999999999999999999999999999999999877 556666
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc-------------
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI------------- 1157 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq------------- 1157 (1669)
..+ . ..+.+|+..|+++...+ |+. .++++.++..+...|-...|++-+..--.
T Consensus 179 ~~~--~----~~~~~AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 179 NRA--T----DRNYDALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred HHh--c----chHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 633 1 14556999999999999 676 89999999999999998888874432110
Q ss_pred -------cc---cCCCCcc----cchHHHHHHhhc---cCCcchh-h----------HHHH--H---HHHhhcc------
Q 000323 1158 -------PA---TGSNDRH----SLFLSDILTCLT---ISDKLIF-W----------VCCV--Y---LVIYRKL------ 1198 (1669)
Q Consensus 1158 -------~A---l~g~sE~----~lSLsKi~~YLt---~sDR~~A-W----------L~~i--Y---llrYrvL------ 1198 (1669)
++ .....|+ +-.|+.+..++. ....... | |..- | .-+|..|
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00 0000111 114445555444 1111001 1 1110 1 2223222
Q ss_pred --------chHHHhhhhhhhhhhccCCCCcccchhhH------HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhH-
Q 000323 1199 --------PDAVLQLLECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA- 1263 (1669)
Q Consensus 1199 --------PGd~y~q~e~~KEAf~I~W~y~~vlk~EP------dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fK- 1263 (1669)
-++-|+-.+.+.+|..| |.+++..+| ........+.+.|.++ ++-+.+...-.++....|
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCc
Confidence 24668888889999999 888877653 2232223333333331 221122222111111122
Q ss_pred --------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHh
Q 000323 1264 --------------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIK 1322 (1669)
Q Consensus 1264 --------------------LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~ 1322 (1669)
...++.++-.++..+|.+++++++..-|.+..|++..+-+.... -|.+|...++.++.+
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 01133334477999999999999999999999955555554444 499999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1323 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1323 ~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
+|++.. +..+++..++..++|.+|..++..
T Consensus 480 ~P~~~~----~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 480 APRSLI----LERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCccHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999 888899999999999999988855
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-08 Score=117.95 Aligned_cols=459 Identities=15% Similarity=0.124 Sum_probs=282.5
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw 1086 (1669)
.....+||++|.--+.-+. ..-|.+++.||+.+-|----+||.|..+.-..++-.++.+.|++=.+..| ...-|
T Consensus 104 ~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW 177 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAW 177 (677)
T ss_pred cccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHH
Confidence 3444899999987665543 47899999999999999999999999999899999999999999999997 56799
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R 1165 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s-E 1165 (1669)
+.||+.+.+.- ..++|+++|++-+-.+ |+ ..-|+--+.+...-|++..|.+++.+--. .-|.. +
T Consensus 178 ~sfI~fElRyk----eieraR~IYerfV~~H-P~--------v~~wikyarFE~k~g~~~~aR~VyerAie--~~~~d~~ 242 (677)
T KOG1915|consen 178 LSFIKFELRYK----EIERARSIYERFVLVH-PK--------VSNWIKYARFEEKHGNVALARSVYERAIE--FLGDDEE 242 (677)
T ss_pred HHHHHHHHHhh----HHHHHHHHHHHHheec-cc--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhhhHHH
Confidence 99999884443 5699999999999998 67 67888999999999999999887765432 11211 1
Q ss_pred ccchHHHHHHhhccC-CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000323 1166 HSLFLSDILTCLTIS-DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~s-DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~ 1244 (1669)
..+..-.|..+.... .-.-|-..+.| ....+| .|+..++|.- + +..=.+|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iyky--Ald~~p------k~raeeL~k~---------------~------~~fEKqf 293 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKY--ALDHIP------KGRAEELYKK---------------Y------TAFEKQF 293 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC------cccHHHHHHH---------------H------HHHHHHh
Confidence 111222222222110 00001111221 112222 2222222221 1 1111121
Q ss_pred cCCcchhhhh-------hhchhhHhHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCchh---------HHHHHH-
Q 000323 1245 SNGESLEKET-------NLRSAHCFAVNH------IWCMAVLNGLECSMNLLEKYIKLYPSCLE---------LVLMKA- 1301 (1669)
Q Consensus 1245 ~ndesla~~~-------~~kt~~~fKLN~------IR~lI~LEDse~A~~LfdklLk~~P~d~e---------L~L~AA- 1301 (1669)
...+...... +++....-|.|+ ++..-..++.+.+++.|.+++...|.-.+ ||+-.+
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 1112222211 233333344443 44433366999999999999998887544 333332
Q ss_pred H--HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--c------cccc
Q 000323 1302 R--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--S------QVEI 1371 (1669)
Q Consensus 1302 y--L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~------~deA 1371 (1669)
| |..++ .+.++.||+..|.+-|...=--..+|+.|+++.+++.+.+.|.+++-....-+++.-. . +=.-
T Consensus 374 yeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 374 YEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Confidence 3 34454 7788899999999999988888889999999999999999999998663333332221 0 0001
Q ss_pred hhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 000323 1372 SDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAML 1450 (1669)
Q Consensus 1372 LDaLrkg-ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYF 1450 (1669)
.|-+++. -.- ++ + +|.++- +.++-+-..-..|+.+.|.+.|+=|++-.....-+..|.-|.-|
T Consensus 453 fDRcRkLYEkf--le---------~-~Pe~c~----~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 453 FDRCRKLYEKF--LE---------F-SPENCY----AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHH--Hh---------c-ChHhhH----HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 1112211 000 00 0 111221 55666666666777778888888777776666667777777777
Q ss_pred HhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhhccccchhhHHHHhhhcCC--CC
Q 000323 1451 LLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFINNIERPRLQQLIDNLLSP--VS 1512 (1669)
Q Consensus 1451 LS~e~~dL~KAeqMS~~~KtVsTYLDT-----AWILf~~~~-----------lARiYI~~i~k~rv~~liDqaL~~--~S 1512 (1669)
=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|+.--.-|-|+..|.|+.. .+
T Consensus 517 Ei~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 517 EIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred hhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 554332 22211 223788996 399886433 334444433445667788888765 22
Q ss_pred CChhhHHHHHhhc------cC--------CCCccccccccc
Q 000323 1513 SDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1539 (1669)
Q Consensus 1513 ~dss~~nkALE~W------~g--------~slLpqKI~~kK 1539 (1669)
.+-...=..||.| +| .+.+|+||++++
T Consensus 590 ~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 590 TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 2222333378889 33 344777776655
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.5e-10 Score=122.93 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=105.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~--P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
+..+...++.+.+..++.++.+.. |.+..+++..+.+..+. .+++|+..|++||...|+|.. ++..|+...+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~ 192 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLID 192 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHH
Confidence 444455678899999999988766 77888866555554443 488999999999999999999 99999999999
Q ss_pred cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHH
Q 000323 1344 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1423 (1669)
Q Consensus 1344 ~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~E 1423 (1669)
.|+.++++++++.|-... +. .++++ ..++.++.. .|+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-------------------~~--------~~~~~-----------~~la~~~~~--lg~~~~ 232 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-------------------PD--------DPDLW-----------DALAAAYLQ--LGRYEE 232 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--------------------HT--------SCCHC-----------HHHHHHHHH--HT-HHH
T ss_pred CCChHHHHHHHHHHHHHC-------------------cC--------HHHHH-----------HHHHHHhcc--cccccc
Confidence 999999999997754433 01 12333 667888888 899999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1424 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1424 AfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
|..+|+++++.+|++ ...+..||..|...|. .++|.++-.
T Consensus 233 Al~~~~~~~~~~p~d--~~~~~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 233 ALEYLEKALKLNPDD--PLWLLAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccc-ccccccccc
Confidence 999999999999999 8999999999988774 666666443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=131.89 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=225.1
Q ss_pred hhhhccchHHHHHHHHHHHhcccc-----------------------------cchhhHHHHHHHHHHHHHhCCCCHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA-----------------------------NKLEGMKKALSLLSRALEADPTSEILW 1052 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~-----------------------------n~~g~ydAALdLLsrALEINPtSaeaW 1052 (1669)
-||-+|.-++.||-+|--+..+.. ...|++..|..-|.+|+++.|.=+.+|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455566677999998865555542 135667778888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000323 1053 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1127 (1669)
Q Consensus 1053 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1127 (1669)
..|+..|...|+-.++...|++||+++| ||. |+..|-..+ .|++|+..|+++..-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999998999999999999997 443 777777777 7899999998876654 332
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----------hHHHHH-HHHh
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----------WVCCVY-LVIY 1195 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----------WL~~iY-llrY 1195 (1669)
-.+.--|.-.|-.+|.+|-||.++.|-.. ..|+ .--+.=-+--..+|+.-. .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 33444556678899999999999988775 3331 111111111112222222 333344 3222
Q ss_pred hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh---hchhhHhHH---HHHHH
Q 000323 1196 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN---LRSAHCFAV---NHIWC 1269 (1669)
Q Consensus 1196 rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~---~kt~~~fKL---N~IR~ 1269 (1669)
=+|++|+--++-.+|..+ |...+...|+-+.+...+| ..|.+ -|+-+.+..-+ .++..-|+- |+.--
T Consensus 359 --NLgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 359 --NLGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred --HHHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 268999999999999999 9999999999999999996 66665 22222111112 222233332 43333
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1270 MAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1270 lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
|-..+|.+.|+..+.+++...|+=++- -|.+.|=... ...+|+..|++||.+.||-+. .-|-..-.+|+.-...|+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhcccch
Confidence 444669999999999999999999999 7777774444 377999999999999999888 344445566666677777
Q ss_pred HHHHHHHH
Q 000323 1348 DFAAELMD 1355 (1669)
Q Consensus 1348 d~Ai~Lc~ 1355 (1669)
|+-.+-+.
T Consensus 510 d~~~~kl~ 517 (966)
T KOG4626|consen 510 DKRMKKLV 517 (966)
T ss_pred HHHHHHHH
Confidence 76544443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=125.71 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=98.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---------CCchHHHHHHHHHhhCCCCHH----HHHHHHhcC
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT---------NSVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1093 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~---------~~eea~emlekAVelnP~NY~----LwlmYInsr 1093 (1669)
..+.++.|+.+|.+|++++|+.+.+|..++.+|.... ...++.+.+++|++++|++.. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4577899999999999999999999999988765332 135688999999999999988 555667777
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1094 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1094 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|+++.+.+ |+. .+.++.+..+|.+.|++++|+..+.+...
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7899999999999998 565 78899999999999999999998888775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-08 Score=126.80 Aligned_cols=358 Identities=15% Similarity=0.116 Sum_probs=238.8
Q ss_pred hhhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1000 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1000 i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-aeaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.+=|.++|-.+-..|=-|...+|- ++|-.|+.+|..+|.++|.. +.+-+-.++.|-+++..+.+.-.|++|.++
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 345667777777777777766665 56899999999999999984 445445556777778888899999999999
Q ss_pred CCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1079 NEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1079 nP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+|.+-. +++-++... +.+ ...|.+|++.+-+.+.-+ +.. -+++..|..-|.+.|+|..+++.-...+
T Consensus 229 dp~~v~alv~L~~~~l~--~~d-~~s~~~~~~ll~~ay~~n-~~n-------P~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLN--FND-SDSYKKGVQLLQRAYKEN-NEN-------PVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred ChhhHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHHhhc-CCC-------cHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 997776 445444444 122 248999999999998888 455 7999999999999999999999333222
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHH-HHHHHH
Q 000323 1157 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR-AIKLIE 1235 (1669)
Q Consensus 1157 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdn-alAL~s 1235 (1669)
..+. +.. +++ ....|+.. -|...|...+||.. |.+.++.+|++ ++.++.
T Consensus 298 ~~t~---~~~-----------~~a-es~Y~~gR------------s~Ha~Gd~ekA~~y---Y~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 298 KNTE---NKS-----------IKA-ESFYQLGR------------SYHAQGDFEKAFKY---YMESLKADNDNFVLPLVG 347 (1018)
T ss_pred Hhhh---hhH-----------HHH-HHHHHHHH------------HHHhhccHHHHHHH---HHHHHccCCCCccccccc
Confidence 2110 110 011 11124433 33444555566666 55555555555 333333
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhh-c-cc-CC
Q 000323 1236 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQK-H-DF-GD 1310 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~-K-~m-~~ 1310 (1669)
+ .+-+|..++.+++.-.|+++++.+|.+.+. .|-..|... + .+ -+
T Consensus 348 l------------------------------gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 348 L------------------------------GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred h------------------------------hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 2 344466779999999999999999999998 444444433 2 12 56
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCC
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1390 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~ 1390 (1669)
.|+.++.+++...|.+.. +|..+.++.... |.-...... ..|+|.|.....++++
T Consensus 398 ~a~~~l~K~~~~~~~d~~----a~l~laql~e~~-d~~~sL~~~--------------~~A~d~L~~~~~~ip~------ 452 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSE----AWLELAQLLEQT-DPWASLDAY--------------GNALDILESKGKQIPP------ 452 (1018)
T ss_pred HHHHHHHHHHhcccccHH----HHHHHHHHHHhc-ChHHHHHHH--------------HHHHHHHHHcCCCCCH------
Confidence 889999999999999999 998888866544 555444444 3577777766666643
Q ss_pred CcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhh-----ccCCc-HHHHHHHHHHHHhcCC-CCCCccc
Q 000323 1391 DPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKA-----AASEH-FKHCVREHAMLLLINE-SEPKEGA 1462 (1669)
Q Consensus 1391 vSDfy~~~~~Q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALka-----np~N~-~i~cLNNYAYFLS~e~-~dL~KAe 1462 (1669)
-+|+. +-.++..|++.+|..-|++||+- |++++ -+.+=..|-.=.+++. .+-..|+
T Consensus 453 ----------------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 453 ----------------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred ----------------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 33444 44445789999999999999966 44442 1122233433333333 3556666
Q ss_pred chhhhHHHH----HHHHhh
Q 000323 1463 PISWQLKLL----NSYLDR 1477 (1669)
Q Consensus 1463 qMS~~~KtV----sTYLDT 1477 (1669)
+|= |-| ++|+|-
T Consensus 517 e~Y---k~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 517 EMY---KSILKEHPGYIDA 532 (1018)
T ss_pred HHH---HHHHHHCchhHHH
Confidence 643 444 888885
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-08 Score=121.08 Aligned_cols=387 Identities=10% Similarity=-0.021 Sum_probs=246.5
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--hCCCCHH---
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA--- 1084 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~lY~~~~~~eea~emlekAVe--lnP~NY~--- 1084 (1669)
.|-.+...+... |+++.|+.+|....+.. +-++..|-.++..+.+.+....+.+.+..+++ +.|+.+.
T Consensus 89 ~~~~~i~~l~~~-----g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLVAC-----GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 455555454443 55799999999988754 34778899999999888887778888888775 4555444
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
|..+|.+.+ .+++|+.+|.+|.. ++ .-.|..|+..|+..|++++|+..+.++.. .|..
T Consensus 164 Li~~y~k~g--------~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~ 221 (697)
T PLN03081 164 VLLMHVKCG--------MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSD 221 (697)
T ss_pred HHHHHhcCC--------CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCC
Confidence 778898888 78999999999864 34 45789999999999999999999998874 3333
Q ss_pred cccchHH-HHHHhhccCCcchhhHHHHHHHHhh--------ccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000323 1165 RHSLFLS-DILTCLTISDKLIFWVCCVYLVIYR--------KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1235 (1669)
Q Consensus 1165 E~~lSLs-Ki~~YLt~sDR~~AWL~~iYllrYr--------vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~s 1235 (1669)
+...+.. -+..|...++-..+.-...+.++.. ..+-+.|...|...+|..+ +....+. ++...-.
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~---~~vt~n~ 295 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPEK---TTVAWNS 295 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCCC---ChhHHHH
Confidence 3223333 3345555554433322222222222 2245677788888888776 5544322 3333334
Q ss_pred HHHHHHhhhcCCcchhhhh-------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhH--HHHHHHHhh
Q 000323 1236 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQK 1305 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~-------~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~-P~d~eL--~L~AAyL~~ 1305 (1669)
| +..|.. .|+-+.+... +.+.+..|=..+|+.+..+++.+.|..++..+++.. +.++.+ .|...|...
T Consensus 296 l-i~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 M-LAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred H-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 4 344443 3433333332 122233343355666666889999999999999986 555555 788888665
Q ss_pred cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----------H----hhhhccccccc
Q 000323 1306 HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF-----------H----SVWKVQYSQVE 1370 (1669)
Q Consensus 1306 K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff-----------~----gia~~Q~~~de 1370 (1669)
.. .++|..+|+++.. | |.. .|+-+|....+.|+.++|+++.++.. . ++++.+ ..++
T Consensus 374 G~-~~~A~~vf~~m~~--~-d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~ 444 (697)
T PLN03081 374 GR-MEDARNVFDRMPR--K-NLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQ 444 (697)
T ss_pred CC-HHHHHHHHHhCCC--C-Cee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHH
Confidence 44 8899999998754 3 555 79999999999999999999999822 1 111111 4555
Q ss_pred chhhhcccCC--CCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000323 1371 ISDPLVADMS--HSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1448 (1669)
Q Consensus 1371 ALDaLrkgns--~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1448 (1669)
|...|+.-.. .+.+ ....| ..|-++|.+ .|+++||+..|+++ ...|+- .+|+--+
T Consensus 445 a~~~f~~m~~~~g~~p------~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll 501 (697)
T PLN03081 445 GWEIFQSMSENHRIKP------RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALL 501 (697)
T ss_pred HHHHHHHHHHhcCCCC------Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHH
Confidence 6666553211 1111 11234 778888888 88888888888775 233432 3344333
Q ss_pred HHHhcCCCCCCcccchhh
Q 000323 1449 MLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1449 YFLS~e~~dL~KAeqMS~ 1466 (1669)
--.. ...+++.|+.+..
T Consensus 502 ~a~~-~~g~~~~a~~~~~ 518 (697)
T PLN03081 502 TACR-IHKNLELGRLAAE 518 (697)
T ss_pred HHHH-HcCCcHHHHHHHH
Confidence 2222 2334555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=119.46 Aligned_cols=277 Identities=10% Similarity=-0.073 Sum_probs=182.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
..|++..|...+.++.+..|+....+...+.++.++++.+.++++|++|.+..|++.. .+.+++..+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-------- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-------- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC--------
Confidence 4588999999999999999998888888899999999999999999999999998852 477888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHh---hc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1178 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~Y---Lt 1178 (1669)
.|+.|+..++++.+.. |+. .+++..+..+|.++|+++.|+..+.++...... ++....-.....+ +.
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 554 799999999999999999999988888862211 1111110011111 10
Q ss_pred cCCc--chh-----hHHH--HH--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCC
Q 000323 1179 ISDK--LIF-----WVCC--VY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1247 (1669)
Q Consensus 1179 ~sDR--~~A-----WL~~--iY--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~nd 1247 (1669)
..+. ... |-.. .+ ........+..+...|...+|+.+ ..+.++..|++....
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~---l~~~l~~~pd~~~~~-------------- 300 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI---IFDGLKKLGDDRAIS-------------- 300 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH---HHHHHhhCCCcccch--------------
Confidence 0000 000 1000 00 112222223333333333333332 222222222221100
Q ss_pred cchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCch--hHHHHHHHHhhcc-cCCccHHHHH--HHH
Q 000323 1248 ESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL--ELVLMKARLQKHD-FGDLSSVGFE--EAL 1320 (1669)
Q Consensus 1248 esla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~--eL~L~AAyL~~K~-m~~~A~svle--~AL 1320 (1669)
+-.++.++. .++.+.++.++++.++.+|.+. .+.+...++..+. ...+|+..|+ .++
T Consensus 301 ----------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 301 ----------------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred ----------------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 012444433 3477888999999999999999 7744444443332 2778999999 688
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1321 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1321 ~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
...|++.. .. -|....++.|+.++|.++-++...
T Consensus 365 ~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 365 KEQLDAND----LA-MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88898876 22 568889999999999888776433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=121.56 Aligned_cols=406 Identities=13% Similarity=0.105 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~ 1084 (1669)
|...|=.+...|... |+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++. .|+-+.
T Consensus 252 d~~s~n~li~~~~~~-----g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 252 DCISWNAMISGYFEN-----GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CcchhHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 445676666666654 5569999999998775 45 4556667777778888888888898888764 344444
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
|-.+|.+.+ .+++|+.+|++|.. ++ ...|..|+..|++.|++++|+..+.++.. .
T Consensus 326 ~n~Li~~y~k~g--------~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~ 383 (857)
T PLN03077 326 CNSLIQMYLSLG--------SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---D 383 (857)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 788999998 78999999999854 34 45799999999999999999999998875 3
Q ss_pred CCCcccchHHHHH-HhhccCCcchhhHHHHHHHHhhcc--------chHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000323 1162 SNDRHSLFLSDIL-TCLTISDKLIFWVCCVYLVIYRKL--------PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1232 (1669)
Q Consensus 1162 g~sE~~lSLsKi~-~YLt~sDR~~AWL~~iYllrYrvL--------PGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1232 (1669)
|..|...++..+. .|-..++-..+.-...+..+.+.. +-+.|...|+.++|+.+ +.+..+.+. ..
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~d~---vs 457 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPEKDV---IS 457 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCCCCe---ee
Confidence 4444344554444 555555554443333332222222 23556667777777666 444432211 11
Q ss_pred HHHHHHHHHhhhcCCcchhhhhh------hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhH--HHHHHHH
Q 000323 1233 LIEMAVNSVELYSNGESLEKETN------LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARL 1303 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~------~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~-d~eL--~L~AAyL 1303 (1669)
.-.| +..|.. .+.-..+...- .+.+..+=...|..+...++.+.+.+++..+++.... +.-+ .|...|.
T Consensus 458 ~~~m-i~~~~~-~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSI-IAGLRL-NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHH-HHHHHH-CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 1112 111211 11111111110 0111111122233333355667777777776665432 1222 5556664
Q ss_pred hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH---------------HHhhhhccccc
Q 000323 1304 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW---------------FHSVWKVQYSQ 1368 (1669)
Q Consensus 1304 ~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f---------------f~gia~~Q~~~ 1368 (1669)
.... .++|+.+|+.. +.+.. .|+-+|....+.|+.++|+++.++- +.++++.+ .-
T Consensus 536 k~G~-~~~A~~~f~~~----~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v 605 (857)
T PLN03077 536 RCGR-MNYAWNQFNSH----EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MV 605 (857)
T ss_pred HcCC-HHHHHHHHHhc----CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hH
Confidence 4443 67888888775 55666 8999999999999999999999871 11122111 44
Q ss_pred ccchhhhcccC--CCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHH
Q 000323 1369 VEISDPLVADM--SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVRE 1446 (1669)
Q Consensus 1369 deALDaLrkgn--s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNN 1446 (1669)
++|+..|..-. ..+.+ ..+. |..|.++|.+ .|+++||...|++. ...|+-.+..+|.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P------~~~~-----------y~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITP------NLKH-----------YACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHHHHHHHhCCCC------chHH-----------HHHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 55666555321 11111 1233 4899999999 99999999999985 46676545555555
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc
Q 000323 1447 HAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL 1486 (1669)
Q Consensus 1447 YAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~ 1486 (1669)
|+.+ ..+++.|+.+.. +++ .+|... +|++...++
T Consensus 666 -ac~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 -ACRI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred -HHHH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 3322 456777776655 444 344444 777777777
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-07 Score=109.17 Aligned_cols=276 Identities=16% Similarity=0.187 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh-------CCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA-------DPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1077 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI-------NPtS------aeaWy~yl~lY~~~~~~eea~emlekAVe 1077 (1669)
+.-+..|+.+|-.... +.|+.|.+.+...... |--+ ++++.+-+-++.-.++..++++.|.+||+
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555544432 4556665555433221 1111 34444444444455667789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
+.|.+-. ++.+|+... +=++....|-.+..-+ |.. -|+++.+.|++...++|+.|+.-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~ld-p~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDLD-PEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhcC-CCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987655 778888776 4577777776655555 666 89999999999999999999871
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+ ++....+|+++++.
T Consensus 417 --F---------------------------------------------------------------~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 --F---------------------------------------------------------------QKAISLDPENAYAY 431 (606)
T ss_pred --H---------------------------------------------------------------HHHhhcChhhhHHH
Confidence 1 11123478999999
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCcc
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1312 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A 1312 (1669)
+.+++-.|++ ...+++...|....+.-|.|+++ .+.+.-|.-++.=++|
T Consensus 432 iQl~~a~Yr~------------------------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ------------------------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9987666663 04567888999999999999999 8998888776668899
Q ss_pred HHHHHHHHHhCCC------CCc-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000323 1313 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1313 ~svle~AL~~~Pk------Na~-g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1385 (1669)
...|+.|+.++|+ |+. ++..+ ++...|. +++++|+.||++ ++. +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka---~l~~qwk-~d~~~a~~Ll~K-----------------A~e-----~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKA---LLVLQWK-EDINQAENLLRK-----------------AIE-----LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhh---Hhhhchh-hhHHHHHHHHHH-----------------HHc-----cCc-
Confidence 9999999999999 665 44433 2444576 699999999976 222 111
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1447 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNY 1447 (1669)
.+| | ++.+++-....+|+.+||.+.||+++.++... ..-++=|
T Consensus 535 -----kce-------~-----A~~tlaq~~lQ~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE-------Q-----AYETLAQFELQRGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH-------H-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 122 3 78787766666999999999999999999876 4444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.6e-07 Score=90.41 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
...+.++.+|..++.. |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.++|++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888888776 45799999999999999999999999999999999888899999999999988765
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++.+|...+ .|++|+..|.+.....+ +.. .+++..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777 78899998888766421 122 46677788888899999999887766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=113.13 Aligned_cols=156 Identities=24% Similarity=0.285 Sum_probs=128.9
Q ss_pred hhhhccchHHHHHHHHHHHhcccc-------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA-------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1074 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~-------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlek 1074 (1669)
.+...|.|+++||+++...-.-.. ....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.+.+.+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 788899999999999954333221 2234467889999999999999999999999999999888889999999
Q ss_pred HHhhCCCCHHHHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000323 1075 SVKHNEGSYALWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1145 (1669)
Q Consensus 1075 AVelnP~NY~LwlmYInsr~------slddrl~~YdkAI~aLe~las~~---~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1145 (1669)
++..+|+++.||..||+..- ++.+-...|.+++..|....... ..+..+..-.++++++.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999653 35667778888888886654432 1234456779999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000323 1146 EKAIQRISRLLI 1157 (1669)
Q Consensus 1146 dKAI~tl~rLEq 1157 (1669)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999998888876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=116.25 Aligned_cols=192 Identities=14% Similarity=0.002 Sum_probs=145.2
Q ss_pred hhhhccchHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1077 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1077 (1669)
-++..|.....|..+|.-++.... ...+.++.|...+.+|++++|+++.+|..++.++...+...++...|++|++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344556667888888876553321 2456789999999999999999999999999999999999999999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
++|++.. ++..|...+ .|++|+..|+++.+.+ |+. ....+.++.++...|++++|+..+.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~-P~~-------~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLD-PTR-------AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999876 666777777 7899999999999988 453 3344444555667899999999776
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
++.. .. .| .+. .+..++|.+|...|..+||... +.++...+|+...+.
T Consensus 431 ~~l~--~~--~p--------------~~~-----------~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 431 ELRS--QH--LQ--------------DNP-----------ILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAV 478 (553)
T ss_pred HHHH--hc--cc--------------cCH-----------HHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHH
Confidence 6653 11 11 111 1223457777888999999888 788888888888888
Q ss_pred HHHHHHHHh
Q 000323 1234 IEMAVNSVE 1242 (1669)
Q Consensus 1234 ~smA~dYY~ 1242 (1669)
..++ .+|.
T Consensus 479 ~~l~-~~~~ 486 (553)
T PRK12370 479 NLLY-AEYC 486 (553)
T ss_pred HHHH-HHHh
Confidence 7774 4443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=110.57 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhh
Q 000323 1029 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
++++.|+.+|....+.... +..+|..++..|.+.+.-.++.+.|+...+.. |+... |...|.+.+ .
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~ 522 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------Q 522 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------C
Confidence 5568888888888876654 67778888888888888777888888877643 32222 556677776 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000323 1103 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1180 (1669)
Q Consensus 1103 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1180 (1669)
+++|+.+|.+|.+.. .|| .-++..|+..|++.|++++|.+.+..+... ..|..|...+.. -|..|...+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCC
Confidence 788888888876532 355 567888888888888888888877777531 122233112222 222344444
Q ss_pred CcchhhHHHHHHH---------HhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1181 DKLIFWVCCVYLV---------IYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1181 DR~~AWL~~iYll---------rYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+-..|+-.+.... .|..| ...|.+.|...+|+. ++... . . .
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsL-I~ay~k~G~~deAl~------------------lf~eM-~---~-~------ 643 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIA-VNSCSQKGDWDFALS------------------IYDDM-K---K-K------ 643 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhcCCHHHHHH------------------HHHHH-H---H-c------
Confidence 4332311111111 11111 112222222222222 22110 0 0 0
Q ss_pred hhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCC
Q 000323 1252 KETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1326 (1669)
Q Consensus 1252 ~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkN 1326 (1669)
.-..+..+=..+|..+...++.+.|.++|+.+.+.. |...-. .|..+|....+ .++|+.+|+++... .|+
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 001111111233444444678888888888888763 333333 77777765554 77888888887653 443
Q ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1327 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1327 a~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.. .|+.||....+.|++++|.++..+
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23 688888888888888888888876
|
|
| >PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-09 Score=79.92 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.0
Q ss_pred cceeecccc-cccCCCCcchhhh
Q 000323 856 PLCMYELRG-KCNNDECPWQHVK 877 (1669)
Q Consensus 856 ~lC~fel~G-~CNd~~C~wQH~~ 877 (1669)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-06 Score=104.77 Aligned_cols=338 Identities=10% Similarity=0.025 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH-
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~- 1084 (1669)
+...|=.+...+... |+++.|+.+|...++..+. +...|..++..+...+.-..+.+.+..+++.. |+-+.
T Consensus 188 ~~~t~n~li~~~~~~-----g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 188 NLASWGTIIGGLVDA-----GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred CeeeHHHHHHHHHHC-----cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 344555555555444 5578888888888876543 45667777777777777666777777666543 22222
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
|-.+|.+.+ .+++|+.+|++|... + ...|-.|+..|++.|++++|+..+.++.. .|
T Consensus 263 n~Li~~y~k~g--------~~~~A~~vf~~m~~~---~--------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g 320 (697)
T PLN03081 263 CALIDMYSKCG--------DIEDARCVFDGMPEK---T--------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SG 320 (697)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHhCCCC---C--------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC
Confidence 778999988 789999999888543 3 56899999999999999999999888874 34
Q ss_pred CCcccchHHH-HHHhhccCCcchhhHHHHHHHHhhc--------cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1163 NDRHSLFLSD-ILTCLTISDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1163 ~sE~~lSLsK-i~~YLt~sDR~~AWL~~iYllrYrv--------LPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
..+...+... +..|...++-..+.-...+.++... .+.+.|...|.-++|..+ +....+ | ++...
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeH
Confidence 3332334333 4456555554444222222222211 122333344444444433 222211 1 11111
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchhH-HHHHHHHhhcccCC
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK--LYPSCLEL-VLMKARLQKHDFGD 1310 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk--~~P~d~eL-~L~AAyL~~K~m~~ 1310 (1669)
- .+|..|...++.++|+++|+++++ ..|+.+.. .|..++-... ..+
T Consensus 395 n------------------------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~ 443 (697)
T PLN03081 395 N------------------------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSE 443 (697)
T ss_pred H------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHH
Confidence 1 224444445566666666666554 23444444 4444443332 255
Q ss_pred ccHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH---hhhhcccccccchhhhc
Q 000323 1311 LSSVGFEEALIK---WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFH---SVWKVQYSQVEISDPLV 1376 (1669)
Q Consensus 1311 ~A~svle~AL~~---~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~---gia~~Q~~~deALDaLr 1376 (1669)
+|..+|+.+... .|+-. .|.-+|...-+.|++++|.++.++ .|. +.+......+.|..+++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~-----~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAM-----HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHhcCCCCCcc-----chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666665543 22221 234445666666666666665544 011 11111112233333333
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1377 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1377 kgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
+.... .+. ....| .+|..+|.. .|+++||...++.....
T Consensus 519 ~l~~~-----~p~-~~~~y-----------~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGM-----GPE-KLNNY-----------VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCC-----CCC-CCcch-----------HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 22111 111 12345 788889999 99999999999876643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-06 Score=101.78 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=94.5
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHH--HHHHHcCCh
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYV--EYALQNGRH 1347 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLI--q~al~~en~ 1347 (1669)
.++.-.+...|+.+++++|....| -+.+.|++..+ +++....|..|..++|.|+. ||+..=+-+| +++-...++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999996 88888888887 99999999999999999999 5554422111 122233344
Q ss_pred HHHHHHHHH---HHH--hhhhccc-ccccchhhhccc--CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000323 1348 DFAAELMDR---WFH--SVWKVQY-SQVEISDPLVAD--MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1419 (1669)
Q Consensus 1348 d~Ai~Lc~~---ff~--gia~~Q~-~~deALDaLrkg--ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg 1419 (1669)
++++.|--. -|- +++.|.. +-.++..+|... -+|. -++.| .+.+.+|-- ++
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy-----------~~fAeiLtD--qq 476 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY-----------NLFAEILTD--QQ 476 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH-----------HHHHHHHhh--HH
Confidence 444444333 111 1222211 333334344333 2221 24555 667777777 78
Q ss_pred CHHHHHHHHHHHHhhccCC
Q 000323 1420 DWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1420 ~~~EAfaAYDKALkanp~N 1438 (1669)
+++.|..-||+|+...|.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hHHHHHHHHHHHHhhcccc
Confidence 8888888888888887775
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=101.63 Aligned_cols=355 Identities=13% Similarity=0.035 Sum_probs=221.5
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
+.|++--+++-...|.. ++|..||.-|-.|+|.||++=.++|.-+-.|..+|....+..-|.+-+++-|+=+.
T Consensus 35 ~advekhlElGk~lla~-----~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 35 PADVEKHLELGKELLAR-----GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 35556666665555544 67899999999999999999999999999999999988899999999999987665
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC---cchhh--hhhHHHHH--HHHHHHHHhcCHHHHHHHHHhh
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD---EMHAS--ACILDLFL--QMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D---r~~~S--a~iLDILL--~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
-+.+.++++ .+++|..=+.......+.. ++..| +-|.+-+. +++.-+.-+|++..||..|+.|
T Consensus 110 iQRg~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 110 IQRGVVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHhchhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 556778888 8899988887666655222 12222 23444433 3444455678999999999999
Q ss_pred cccccCCCCcccchHHHHH--HhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1156 LIPATGSNDRHSLFLSDIL--TCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1156 Eq~Al~g~sE~~lSLsKi~--~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+. ..+=+.+|-.++ -|+..++. ...||+++. +.+-.-|+.-.+
T Consensus 182 lE-----i~~Wda~l~~~Rakc~i~~~e~----k~AI~Dlk~--------------------------askLs~DnTe~~ 226 (504)
T KOG0624|consen 182 LE-----IQPWDASLRQARAKCYIAEGEP----KKAIHDLKQ--------------------------ASKLSQDNTEGH 226 (504)
T ss_pred Hh-----cCcchhHHHHHHHHHHHhcCcH----HHHHHHHHH--------------------------HHhccccchHHH
Confidence 86 333122222222 23333333 233444433 222222444455
Q ss_pred HHHHHHHHhhhcCCcchhhhh-------hhchhhHhHH-----------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchh
Q 000323 1234 IEMAVNSVELYSNGESLEKET-------NLRSAHCFAV-----------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1295 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~-------~~kt~~~fKL-----------N~IR~lI~LEDse~A~~LfdklLk~~P~d~e 1295 (1669)
++++-=+|. +|+-+.+-.. ++.--.|||- .-+.+.|...+++.|++-..++|+..|+.+.
T Consensus 227 ykis~L~Y~--vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 227 YKISQLLYT--VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 555444666 4443333221 2222233332 0033333344999999999999999999887
Q ss_pred HHHH-----HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccc
Q 000323 1296 LVLM-----KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1370 (1669)
Q Consensus 1296 L~L~-----AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~de 1370 (1669)
+.+- +.-....+.+.+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+....--... .+-.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~re 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRARE 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHH
Confidence 7222 22223333477999999999999999999 44444777777778888887654422111111 12222
Q ss_pred chhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHH-HHhhccCC
Q 000323 1371 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1438 (1669)
Q Consensus 1371 ALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDK-ALkanp~N 1438 (1669)
.++--++.-.+. -.-|+| -|||.=.- -+..|-..||-| |.+|-|+|
T Consensus 380 Gle~Akrlkkqs-------~kRDYY-----------KILGVkRn----AsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 380 GLERAKRLKKQS-------GKRDYY-----------KILGVKRN----ASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHh-------ccchHH-----------HHhhhccc----ccHHHHHHHHHHHHHhcCCcc
Confidence 233222221221 236888 78887443 356677788877 57999999
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-06 Score=99.62 Aligned_cols=286 Identities=9% Similarity=0.000 Sum_probs=182.2
Q ss_pred HHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHH
Q 000323 1058 IFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL 1133 (1669)
Q Consensus 1058 lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL 1133 (1669)
+-...|....+...+.++.++.|+... .+..+...+ .+++|...|.+..+.++.+. +.+.+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~~ 157 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVEI 157 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHHH
Confidence 334667788899999999999987533 456777778 89999999999888874444 56777
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhh
Q 000323 1134 QMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF 1213 (1669)
Q Consensus 1134 ~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf 1213 (1669)
..++++.++|++++|+..+.++.. ..-.++ .....-...|+..+|- +++.
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a~ 207 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QALD 207 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHHH
Confidence 789999999999999999999886 221222 2233333344444443 3332
Q ss_pred ccCCCCcccch---hhHHHHHHHHHHHH-HHHhh---hcCCcchhhhh--hh---chhhHhHHHHHHHHHHhcCHHHHHH
Q 000323 1214 AIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--NL---RSAHCFAVNHIWCMAVLNGLECSMN 1281 (1669)
Q Consensus 1214 ~I~W~y~~vlk---~EPdnalAL~smA~-dYY~~---~~ndesla~~~--~~---kt~~~fKLN~IR~lI~LEDse~A~~ 1281 (1669)
.+ +..+++ .+|.....+..++. ..... ..+-+.+..-. .+ +-...+-+.+...++..++.++|.+
T Consensus 208 ~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 208 DI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 22 222221 12332211111110 01100 00000111000 11 1133444455666677889999999
Q ss_pred HHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000323 1282 LLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMD 1355 (1669)
Q Consensus 1282 LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa--~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1355 (1669)
++.+.++..|++..+ .....++... .+..++..+++++...|+++ . +...|...+.+.|+|++|.+..+
T Consensus 285 ~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999974 3333333332 26678899999999999999 6 67777889999999999998774
Q ss_pred HHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000323 1356 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1356 ~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1435 (1669)
+ ..++.. .| | . ....-++..+++ .|+.++|...|.++|+..
T Consensus 360 ~---------------a~a~~~--~p-----------~-------~--~~~~~La~ll~~--~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 360 N---------------VAACKE--QL-----------D-------A--NDLAMAADAFDQ--AGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred H---------------hHHhhc--CC-----------C-------H--HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 2 001110 01 1 0 012677888888 999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-05 Score=105.92 Aligned_cols=339 Identities=11% Similarity=0.085 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~Y 1103 (1669)
+.++.|+.+|....+ | +...|-.++..|.+.+...++.++|++..+.. |+.+. |..+|.+.+ .+
T Consensus 420 g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--------~v 488 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--------KV 488 (1060)
T ss_pred CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--------CH
Confidence 345566666554443 3 45666666666666666666777776666542 32222 556666666 55
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000323 1104 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1104 dkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1182 (1669)
++|+++|++|.... .|| ...|..|+..|++.|++++|++.+..+.. .|..|..
T Consensus 489 d~A~~vf~eM~~~Gv~Pd--------vvTynaLI~gy~k~G~~eeAl~lf~~M~~---~Gv~PD~--------------- 542 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEAN--------VHTFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPDR--------------- 542 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCH---------------
Confidence 77777777766532 234 56667777777777777777776666553 2333311
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch----hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhh--
Q 000323 1183 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNL-- 1256 (1669)
Q Consensus 1183 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk----~EPdnalAL~smA~dYY~~~~ndesla~~~~~-- 1256 (1669)
..|..| -..|.+.|..++|+.+ +....+ ..|+.... ..+ ++.|.. .|+-+.+...-.
T Consensus 543 ----------vTYnsL-I~a~~k~G~~deA~~l---f~eM~~~~~gi~PD~vTy-naL-I~ay~k-~G~ldeA~elf~~M 605 (1060)
T PLN03218 543 ----------VVFNAL-ISACGQSGAVDRAFDV---LAEMKAETHPIDPDHITV-GAL-MKACAN-AGQVDRAKEVYQMI 605 (1060)
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHH---HHHHHHhcCCCCCcHHHH-HHH-HHHHHH-CCCHHHHHHHHHHH
Confidence 112221 1223333444444444 333321 23443211 122 232322 333232222211
Q ss_pred ---ch--hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCC-CCC
Q 000323 1257 ---RS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWP-KGV 1327 (1669)
Q Consensus 1257 ---kt--~~~fKLN~IR~lI~LEDse~A~~LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~P-kNa 1327 (1669)
.+ ...+=-.+|..|...++.++|..+|+.+.+. .|+.... .|..+|....+ .++|..+|+.++.... -+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCH
Confidence 11 1111113466666678999999999999887 6776666 77777765554 7889999999887542 233
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHh-hhhc-cc-ccccchhhhcccCCCCCCCCCCCCCcc
Q 000323 1328 PGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VWKV-QY-SQVEISDPLVADMSHSSPESTSTSDPE 1393 (1669)
Q Consensus 1328 ~g~~caW~QLIq~al~~en~d~Ai~Lc~~f-----------f~g-ia~~-Q~-~~deALDaLrkgns~i~~es~s~~vSD 1393 (1669)
. .|+-||....+.|++++|.++.... |.. |.-+ +. +.++|+++|+.-... .+..|
T Consensus 685 ~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-------Gi~Pd 753 (1060)
T PLN03218 685 V----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-------GLCPN 753 (1060)
T ss_pred H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCC
Confidence 3 7889999999999999999998762 111 1111 11 667777777743111 11123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh--ccCCcHHHHH
Q 000323 1394 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1444 (1669)
Q Consensus 1394 fy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka--np~N~~i~cL 1444 (1669)
. .+|..|-.++.+ .|++++|...|+.+++. .|+-....||
T Consensus 754 ~---------~Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 754 T---------ITYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred H---------HHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 234555567777 88999999999988854 4444333344
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-06 Score=92.84 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----H
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1085 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----L 1085 (1669)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...++.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36788888876655 45699999999999999999999999999999999999999999999999999876 5
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~r 1154 (1669)
+..|...+ .|++|++.|.+..+.+|.+. .......+....+++++|+..+.+
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~P~~~---------~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDDPNDP---------YRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHccCCHHHHHHHHHH
Confidence 56677777 88999999999999884332 112222344567889999997754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=98.83 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEA---DPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEI---NPtS-aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1099 (1669)
.+..+.++.-|...|+. +|.. +.+|+.++.+|...+...++...|++|++++|++.. ++.+|...+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 45668899999999974 4443 778999999999999999999999999999999877 677888888
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1100 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|.+..+.. |+. .+.++.+..+|...|+++.|++.+.+..+
T Consensus 113 --~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 --NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred --CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999887 565 78899999999999999999998877765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.1e-06 Score=104.35 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=189.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH---HHHHHHhcCCCcccchhh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
.|+++.|..+|....+ .+...|..++..|.+.+..+++.++|+...+. .|+.+. +...|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 4667888888887543 35677888888888888888888888866443 366555 444556666 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000323 1103 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1180 (1669)
Q Consensus 1103 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1180 (1669)
+++|.++++.+.+.. .++ ..++-.|++.|+..|++++|++.++++.. .+ ..+.. -|..|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~--------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d--~vs~~~mi~~~~--- 466 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KD--VISWTSIIAGLR--- 466 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC--eeeHHHHHHHHH---
Confidence 788888888777653 233 56788899999999999999997776653 11 11211 222222
Q ss_pred CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----
Q 000323 1181 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1254 (1669)
Q Consensus 1181 DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~----- 1254 (1669)
++|...||+.+ +.+.++ ..|+......- +..|.. .++-+...+.
T Consensus 467 ------------------------~~g~~~eA~~l---f~~m~~~~~pd~~t~~~l--L~a~~~-~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 467 ------------------------LNNRCFEALIF---FRQMLLTLKPNSVTLIAA--LSACAR-IGALMCGKEIHAHVL 516 (857)
T ss_pred ------------------------HCCCHHHHHHH---HHHHHhCCCCCHhHHHHH--HHHHhh-hchHHHhHHHHHHHH
Confidence 33333333333 222211 12332222211 222322 2222221111
Q ss_pred --hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHH--hCCCCCch
Q 000323 1255 --NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPG 1329 (1669)
Q Consensus 1255 --~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~--~~PkNa~g 1329 (1669)
....+..+.-.+|..|...++.+.|..+|+.. .|+-+.. .|..+|....+ .++|+.+|++... ..|+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc-
Confidence 11111112223344444466777777777664 3333333 55556644443 6677777776665 3455544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhcc---cccccchhhhcccCCCCCCCCCCCCCccc
Q 000323 1330 IQCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEF 1394 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDf 1394 (1669)
++-+|...-+.|.++++.++...--. .+-..- .+.++|.+.+++- ++.++ ...
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~ 659 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAV 659 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHH
Confidence 55556666666777776666655221 000000 0456666666532 11110 122
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1395 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1395 y~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
| -++|+-| .. +|+.+.|..+.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 660 ~----------~aLl~ac-~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 660 W----------GALLNAC-RI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred H----------HHHHHHH-HH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 3 1455533 33 899999999999999999976333333222332 2344777777666
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-06 Score=96.80 Aligned_cols=257 Identities=15% Similarity=0.108 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccchh
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl~ 1101 (1669)
-|+|.++|...++.+|...++...|..+|.++|+...+..+-+.-+ ..|+-.. |+.=|...+
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aG-------- 121 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAG-------- 121 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhh--------
Confidence 3999999999999999999999999999999998777766655543 3433221 788888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHH-----HHh
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI-----LTC 1176 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi-----~~Y 1176 (1669)
-||+|-++|..+..-- + .....+.+|+.+|.++.+++|||.+-.+|.. +.+. +-.+-++-| +.+
T Consensus 122 l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q-~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQ-TYRVEIAQFYCELAQQA 190 (389)
T ss_pred hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCc-cchhHHHHHHHHHHHHH
Confidence 8999999998886632 2 1278899999999999999999998888886 4432 211111111 112
Q ss_pred hccCCcchh--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcc
Q 000323 1177 LTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1249 (1669)
Q Consensus 1177 Lt~sDR~~A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndes 1249 (1669)
+..+|-..| ||...+ -+|=.+++|++++..|....|... +..++.-||+.+--+..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~-------------- 253 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLE-------------- 253 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHH--------------
Confidence 222222222 555554 233456666666666666666555 44444444443333322
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCch
Q 000323 1250 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1329 (1669)
Q Consensus 1250 la~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g 1329 (1669)
.+.-||..+++.+..++.+.++|+..+...-+.+++.+++.+++++.|...+-+-|...|.=.
T Consensus 254 ---------------~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-- 316 (389)
T COG2956 254 ---------------MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-- 316 (389)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH--
Confidence 235566667788888888888888888776666667777777778888887788888888643
Q ss_pred HHHHHHHHHHHHHHc
Q 000323 1330 IQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~ 1344 (1669)
.+..|+++.+..
T Consensus 317 ---gf~rl~~~~l~d 328 (389)
T COG2956 317 ---GFHRLMDYHLAD 328 (389)
T ss_pred ---HHHHHHHhhhcc
Confidence 355666665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-05 Score=98.17 Aligned_cols=374 Identities=14% Similarity=0.093 Sum_probs=216.3
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
.++++.+..|..+++- |+|..|+.+|..++...+. ++.+|+.++.+|+..+..++|.++|+++|.++|+++.
T Consensus 412 d~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hhHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 3447788888877776 5689999999999887775 5789999999999999999999999999999999999
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 1158 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D----r~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~ 1158 (1669)
|+.+|..++ .-++|+++|+++. + +| ..++.-...-++.-++++|.+.|+.++-|.+..-|...
T Consensus 487 i~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 487 ITLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred hhHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999 8899999999876 2 44 22233344556788999999999999888765444320
Q ss_pred c------------------cC---CCCcccchHHHHHHhhccCCcchh--hHHHH--H-HHHhhccc-hHH---------
Q 000323 1159 A------------------TG---SNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DAV--------- 1202 (1669)
Q Consensus 1159 A------------------l~---g~sE~~lSLsKi~~YLt~sDR~~A--WL~~i--Y-llrYrvLP-Gd~--------- 1202 (1669)
- +. +-.. ++.-..++.-...+|.-.+ -++.- . -...+.|. .+|
T Consensus 556 ~~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 556 FLKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 0 00 0000 1111112222222221111 00000 0 00001110 111
Q ss_pred -HhhhhhhhhhhccCCCC--cccchhhHHH--HHHHHHHHHHHHhhhcCCcchhhhh----------hhchhhHhHHH-H
Q 000323 1203 -LQLLECEKELFAIDWPP--VQLEDDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN-H 1266 (1669)
Q Consensus 1203 -y~q~e~~KEAf~I~W~y--~~vlk~EPdn--alAL~smA~dYY~~~~ndesla~~~----------~~kt~~~fKLN-~ 1266 (1669)
+...++..||+.|---- ..+.-.+++. -+.-+.++..+|.. +...+-+- +.++-+.+--| .
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 12223344443320000 0000001110 01111111112211 11110000 11222222223 2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc-hhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~P~d-~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+..+....+-.+-..++.+++..+|.+ .-+ .+++-++.....-..|+..|-+|+..+|+++-.-.|+=..+|.++++.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 333333445566777888888888888 455 777777666654567888999999999999997777766677777655
Q ss_pred CChHHHHHHHHH---HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCH
Q 000323 1345 GRHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDW 1421 (1669)
Q Consensus 1345 en~d~Ai~Lc~~---ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~ 1421 (1669)
.+..+ -++||+..+. +.+ +|.+ ..+|+ .|==||-+||+ -|-.
T Consensus 792 -------~v~~Rh~~i~qG~afL~R-Y~~----lR~~-------------------~~~QE--a~YNigRayh~--~gl~ 836 (895)
T KOG2076|consen 792 -------RVSNRHAQIAQGFAFLKR-YKE----LRRC-------------------EEKQE--AFYNIGRAYHQ--IGLV 836 (895)
T ss_pred -------HHhhhHHHHHHHHHHHHH-HHH----hhcc-------------------HHHHH--HHHHHHHHHHH--cccH
Confidence 22333 3556665432 111 1100 01122 22346779999 9999
Q ss_pred HHHHHHHHHHHhhcc
Q 000323 1422 NEARLAIDAALKAAA 1436 (1669)
Q Consensus 1422 ~EAfaAYDKALkanp 1436 (1669)
.=|..-|+|+|...|
T Consensus 837 ~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 837 HLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-06 Score=109.79 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=171.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
=|.|-+..+|+++.+|..|..++.+..+-+++++.+++|+.- |+.-.. +|--|+|.+..++.. +.-..++|
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e----esl~kVFe 1521 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE----ESLKKVFE 1521 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH----HHHHHHHH
Confidence 378889999999999999999999999999999999999853 443333 999999999655521 34455666
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1191 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1191 (1669)
++..-. |- .=+++.|..+|..++.++.|.+.++.++. || ++.+..|+.+.-
T Consensus 1522 RAcqyc--d~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF------~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1522 RACQYC--DA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KF------GQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHhc--ch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hh------cchhhHHHHHHH
Confidence 665544 33 67999999999999999999997777663 12 356677876543
Q ss_pred HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH----HHH
Q 000323 1192 LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHI 1267 (1669)
Q Consensus 1192 llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL----N~I 1267 (1669)
+++..+..++|-. ++. ++..++|- ..|
T Consensus 1573 ----------fLl~~ne~~aa~~------------------lL~---------------------rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1573 ----------FLLRQNEAEAARE------------------LLK---------------------RALKSLPKQEHVEFI 1603 (1710)
T ss_pred ----------HHhcccHHHHHHH------------------HHH---------------------HHHhhcchhhhHHHH
Confidence 2233322222222 222 23333333 235
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Q 000323 1268 WCMAV----LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1268 R~lI~----LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~ 1340 (1669)
+.++. .+|.+.++.||.-+|..||.=.+||++...|+.+.+ ....+.+|++|+.+ -|+...-.-..| ++|
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw---Ley 1680 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW---LEY 1680 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH---HHH
Confidence 55544 459999999999999999999999999999999975 55777999999875 466666444455 666
Q ss_pred HHHc---CChHHHHHHHHHHHHhhh
Q 000323 1341 ALQN---GRHDFAAELMDRWFHSVW 1362 (1669)
Q Consensus 1341 al~~---en~d~Ai~Lc~~ff~gia 1362 (1669)
+-.. ++.+.++.=+.+|..++.
T Consensus 1681 Ek~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHhcCchhhHHHHHHHHHHHHHHhh
Confidence 6654 455555555666777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=95.01 Aligned_cols=122 Identities=9% Similarity=0.081 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1106 (1669)
..+.++.+...|.++|+.+|+++++|+.++.+|...+....+.+.|++|++++|++-.++..|..--..-.++. .+++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-MTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CcHHH
Confidence 45777999999999999999999999999999999999999999999999999999985554443210001111 36999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1107 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.+|.+..+.. |+. .++++.+...+.+.|+|++||..+.++..
T Consensus 130 ~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 555 89999999999999999999999999876
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=86.56 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC--C
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1081 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP--~ 1081 (1669)
+..+.+...|..+|..+...+ +++.|...|.++++.+|.+..+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLG-----ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 344566688888888777764 569999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1082 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1082 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
... ++..|...+ .+++|+..|.+..... ++. .+.++.+..+|...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 667777777 8899999999988887 454 67899999999999999999998887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=93.97 Aligned_cols=250 Identities=14% Similarity=0.027 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILW-ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaW-y~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
.|+++.|...|.++.+.+|++..+. ...+.++...++.+.+.+.++++++.+|+|-+ +..+|+..+ .
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g--------d 202 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------A 202 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h
Confidence 3668999999999999999996443 44488999999999999999999999999986 888999998 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1182 (1669)
+++|+.+|..+.+...-+..+....-...++.++.......+-+...+.+..+-. ..+
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~----------------------~~~ 260 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR----------------------KTR 260 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH----------------------HHh
Confidence 9999999999887652221000000012223333332223222222222222110 001
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHh
Q 000323 1183 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1262 (1669)
Q Consensus 1183 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~f 1262 (1669)
....+... .+..+...|...+|.. ++..+.+ . ..+.
T Consensus 261 ~~~~~~~~--------~A~~l~~~g~~~~A~~------------------~L~~~l~---~---------------~~~~ 296 (398)
T PRK10747 261 HQVALQVA--------MAEHLIECDDHDTAQQ------------------IILDGLK---R---------------QYDE 296 (398)
T ss_pred CCHHHHHH--------HHHHHHHCCCHHHHHH------------------HHHHHHh---c---------------CCCH
Confidence 01111111 2223333344444433 3333211 0 0001
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1263 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1263 KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
.+-.+.-.+..++.+.++..+++.++.+|.++++.+..+++..+. .-.+|+..|+.++...|++.. +.-|.+..
T Consensus 297 ~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-----~~~La~~~ 371 (398)
T PRK10747 297 RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-----YAWLADAL 371 (398)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-----HHHHHHHH
Confidence 111111112346899999999999999999999965555554443 377999999999999999866 33477788
Q ss_pred HHcCChHHHHHHHHH
Q 000323 1342 LQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~ 1356 (1669)
.+.|+.++|.++-++
T Consensus 372 ~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 372 DRLHKPEEAAAMRRD 386 (398)
T ss_pred HHcCCHHHHHHHHHH
Confidence 889999999777665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9e-07 Score=108.98 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=164.8
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH---HHHHHHhcCCCcccchhhHHHHH
Q 000323 1033 KALSLLSR-ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA---LWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1033 AALdLLsr-ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~---LwlmYInsr~slddrl~~YdkAI 1107 (1669)
-+|.+|++ .++.+|++|+.|+.++.+|+-+++-+.+..+|++||+++|+ .|. ++-=++-.+ .||+|.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------e~d~a~ 475 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------EFDKAM 475 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH--------HHHhHH
Confidence 34555554 35789999999999999999999888999999999999983 222 334455555 899999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
..|-.+.... +.- --.|+=|--.|..+++++.|.- -++.|++ .|| +..+=+
T Consensus 476 ~~fr~Al~~~-~rh-------YnAwYGlG~vy~Kqek~e~Ae~----~fqkA~~-INP----------------~nsvi~ 526 (638)
T KOG1126|consen 476 KSFRKALGVD-PRH-------YNAWYGLGTVYLKQEKLEFAEF----HFQKAVE-INP----------------SNSVIL 526 (638)
T ss_pred HHHHhhhcCC-chh-------hHHHHhhhhheeccchhhHHHH----HHHhhhc-CCc----------------cchhHH
Confidence 9997777776 454 6688899999999999999987 3444444 466 122334
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1267 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1267 (1669)
|| .|.++.+.+..++|+.+ +.++...||.+.+..|.+|
T Consensus 527 ~~---------~g~~~~~~k~~d~AL~~---~~~A~~ld~kn~l~~~~~~------------------------------ 564 (638)
T KOG1126|consen 527 CH---------IGRIQHQLKRKDKALQL---YEKAIHLDPKNPLCKYHRA------------------------------ 564 (638)
T ss_pred hh---------hhHHHHHhhhhhHHHHH---HHHHHhcCCCCchhHHHHH------------------------------
Confidence 44 35567777888888888 7777777777777777653
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000323 1268 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1268 R~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~ 1328 (1669)
+.+..+++-++|+..++.+-+..|++.-+ .|.+ .|-++. +...|+.-|--|+..+|+-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG-NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-cchHHHHhhHHHhcCCCccch
Confidence 45556779999999999999999999999 4433 343444 488999999999999999887
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00022 Score=88.36 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1088 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1088 (1669)
.+||.+....+.|.. ...-...|.+||..-|= -.-+|-.|+.+-...+-++-...-|++=++++|....=..-
T Consensus 103 RIwl~Ylq~l~~Q~~-----iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-----ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcch-----HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 789999988888864 34555666666666664 34567777777766666666667777777777766554444
Q ss_pred HHhcCCCcccchhhHHHH-----------------HHHHHHhhhcCCCCcch--------------hhhhhHHHHHHHHH
Q 000323 1089 YINSRTPLNHRLDAYDAA-----------------LSVLCRCASASDGDEMH--------------ASACILDLFLQMLQ 1137 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkA-----------------I~aLe~las~~~~Dr~~--------------~Sa~iLDILL~Lvq 1137 (1669)
|+.....+++....|..- -..||++.+++ |++.+ -+-++.=+|..|++
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 444432222221111111 11234444544 33211 12245667888999
Q ss_pred HHHHhcCHHHHHHHH
Q 000323 1138 CFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1138 LY~qSGnydKAI~tl 1152 (1669)
-|..+|.++||..++
T Consensus 257 YYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHhhhhHHHHHHH
Confidence 999999999998855
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-05 Score=87.65 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
.+-|.+|+.||.+. ++.+|..-|..||++||++.-+|..++.+|...|..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 77899999999995 4699999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
++.=.++ .|++|...|+++...- =+.. -|.|.-+.-|-.+.|..++|-..+.|=+. ++-..+
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~ 173 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAYGEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFP 173 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCCCCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCC
Confidence 3333344 5899999998776641 1233 78899999999999999999986665554 222222
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1245 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1245 (1669)
...++..+.+...+|. -.|...+ +-|.+ +
T Consensus 174 -~~~l~~a~~~~~~~~y---------------------------------------------~~Ar~~~----~~~~~-~ 202 (250)
T COG3063 174 -PALLELARLHYKAGDY---------------------------------------------APARLYL----ERYQQ-R 202 (250)
T ss_pred -hHHHHHHHHHHhcccc---------------------------------------------hHHHHHH----HHHHh-c
Confidence 2222222222222222 1122222 22332 2
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH
Q 000323 1246 NGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1296 (1669)
Q Consensus 1246 ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL 1296 (1669)
+ .-.+..++|- ||+-..+||...+-..=.++.+..|...++
T Consensus 203 ~---------~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 203 G---------GAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred c---------cccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 1333556665 776566889999999999999999999887
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.4e-05 Score=93.04 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
++|.+.|.+.+..|+-+|.-.+-.-..+.....++...++.++...|+..++.++. ++++|-..+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 56899999999999999999999999999989999999999999999999999998 556677777 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+||..|-++..-. +|+ +.||--+.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998887776 888 99999999999999999999999999997
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=91.18 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=177.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000323 1069 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1148 (1669)
++--..|-++. ..|.-.+.|+=++ .=|+|+..|-+++... +.- .|.-|.|-.||..-|.+|.|
T Consensus 26 q~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 26 QDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchHHHH
Confidence 34444554454 7888776676665 4599999999998876 555 89999999999999999999
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000323 1149 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1228 (1669)
Q Consensus 1149 I~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1228 (1669)
|. |-|+-.+ +| +++ .. +
T Consensus 89 IR----iHQ~L~~--sp-dlT---------~~-----------------------------------------------q 105 (389)
T COG2956 89 IR----IHQTLLE--SP-DLT---------FE-----------------------------------------------Q 105 (389)
T ss_pred HH----HHHHHhc--CC-CCc---------hH-----------------------------------------------H
Confidence 99 4443333 44 222 11 2
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhh-h-hchhhHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH------
Q 000323 1229 RAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL------ 1296 (1669)
Q Consensus 1229 nalAL~smA~dYY~~~~ndesla~~~-~-~kt~~~fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL------ 1296 (1669)
.++|+.++|-||..+..- +-++.. . .--..+|..+-+|+++. -.++++|++...++++.-|+.-.+
T Consensus 106 r~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 106 RLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 233344444444432111 001111 0 11124566665666643 339999999999999999887555
Q ss_pred -HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhh
Q 000323 1297 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1375 (1669)
Q Consensus 1297 -~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaL 1375 (1669)
.|.-+++...+ .+.|+..+.+|+..+|+.+. +=+++-..++.+|++..|++..+. ++
T Consensus 184 CELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~-----------------v~ 241 (389)
T COG2956 184 CELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER-----------------VL 241 (389)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH-----------------HH
Confidence 34445555554 77899999999999999999 888999999999999999887755 11
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000323 1376 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1455 (1669)
Q Consensus 1376 rkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1455 (1669)
+-|+++++++. ..|-.||++ .|+.+|...+.-+|...+++-..+.++ |=+.+..+|
T Consensus 242 ---------eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~~~G 297 (389)
T COG2956 242 ---------EQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIELQEG 297 (389)
T ss_pred ---------HhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHHhhC
Confidence 22444555555 677789999 999999999999999999987444443 444455555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=97.41 Aligned_cols=291 Identities=15% Similarity=0.095 Sum_probs=214.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1108 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1108 (1669)
-+..+|+.+|.+.-++.++..=+...++..|..+..-.++...|+.+=+..|.--.=--+|--.-|++.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 3459999999998899999997777889999999988889999999988886433322445555566666 44899
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1109 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1109 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
+|++-.-..+++. -+.|-++-.||-.+++++.||..+.|=.| .+|+ .+
T Consensus 408 ~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~--------------------fa 455 (638)
T KOG1126|consen 408 YLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR--------------------FA 455 (638)
T ss_pred HHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc--------------------cc
Confidence 9988666666787 89999999999999999999995555444 3442 22
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1268 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1268 (1669)
|.| +|.|.=+-.++.-..|-.. |...+.-+|..=-|.+-+++-|++
T Consensus 456 Yay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~K-------------------------- 501 (638)
T KOG1126|consen 456 YAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLK-------------------------- 501 (638)
T ss_pred hhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheec--------------------------
Confidence 333 2334334444444455555 555666666666666555433333
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHH-HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLELVLM-KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL~L~-AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
.|..+.|.--|.++++.+|.+..|+.+ +.-++..+-.++|+..|++|+.++|+|+- .+++-+......+++
T Consensus 502 ----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 502 ----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRY 573 (638)
T ss_pred ----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcch
Confidence 345667777899999999999999444 44344444499999999999999999999 777888888888899
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|...+++ |.++ .| |.=.+|.+||.++=+ .|+.+.|..-
T Consensus 574 ~eal~~LEe---------------Lk~~----vP-------------------~es~v~~llgki~k~--~~~~~~Al~~ 613 (638)
T KOG1126|consen 574 VEALQELEE---------------LKEL----VP-------------------QESSVFALLGKIYKR--LGNTDLALLH 613 (638)
T ss_pred HHHHHHHHH---------------HHHh----Cc-------------------chHHHHHHHHHHHHH--HccchHHHHh
Confidence 888888754 2222 11 222467999999999 9999999999
Q ss_pred HHHHHhhccCC
Q 000323 1428 IDAALKAAASE 1438 (1669)
Q Consensus 1428 YDKALkanp~N 1438 (1669)
|==|+..+|..
T Consensus 614 f~~A~~ldpkg 624 (638)
T KOG1126|consen 614 FSWALDLDPKG 624 (638)
T ss_pred hHHHhcCCCcc
Confidence 99999999954
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-06 Score=94.47 Aligned_cols=308 Identities=17% Similarity=0.192 Sum_probs=203.6
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+|-.|...++...-|-.||.-..+ .+|+.=|.+.|+.-|+=..+-..-+.+..++|+-+.+.+-|.+-+.++|.+
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGks-----k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKS-----KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCC-----ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 444555667788888888877665 889999999999999999999999999999999999999999999999966
Q ss_pred HH-------------HHH------HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhc
Q 000323 1083 YA-------------LWL------MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 1143 (1669)
Q Consensus 1083 Y~-------------Lwl------mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSG 1143 (1669)
-. -|. -|+..+ .|..||.++-.+.+-.+ |--.+..++.++|..-|
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~~--------Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQP--------WDASLRQARAKCYIAEG 203 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcCc--------chhHHHHHHHHHHHhcC
Confidence 54 111 122333 67888888877766553 33678889999999999
Q ss_pred CHHHHHHHHHh---hcccc------------cCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1144 NTEKAIQRISR---LLIPA------------TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1144 nydKAI~tl~r---LEq~A------------l~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
...+||.-+.. |-+.. .-|+ ...||..|+.||..... -++|+-|.-..+++ .-+.+-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--~~~sL~~iRECLKldpd--HK~Cf~~YKklkKv----~K~les 275 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--AENSLKEIRECLKLDPD--HKLCFPFYKKLKKV----VKSLES 275 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--HHHHHHHHHHHHccCcc--hhhHHHHHHHHHHH----HHHHHH
Confidence 99999984432 22211 1122 24578888888888777 56676652222221 111111
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----HHHHHHhcCHHHHHHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH----IWCMAVLNGLECSMNLLE 1284 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----IR~lI~LEDse~A~~Lfd 1284 (1669)
-+++.. +.+-.-.+ + +|+.-+..+ -......+|. -+|+-.-|.+-+|+.-|.
T Consensus 276 ~e~~ie-----------~~~~t~cl-e---------~ge~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 276 AEQAIE-----------EKHWTECL-E---------AGEKVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHh-----------hhhHHHHH-H---------HHHHHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 111111 00000000 1 111111110 0111111222 234333558899999999
Q ss_pred HHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----H
Q 000323 1285 KYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----W 1357 (1669)
Q Consensus 1285 klLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-----f 1357 (1669)
.+|...|+|+++ -=+-+||-.- |-++|+.-|+.|++.+|+|.. + .++.+.|.+|-++ |
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A~e~n~sn~~----~----------reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKALELNESNTR----A----------REGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhcCcccHH----H----------HHHHHHHHHHHHHhccchH
Confidence 999999999999 5566676444 688999999999999999998 5 3467778887766 7
Q ss_pred HHhhhhccc-ccccchhhhccc
Q 000323 1358 FHSVWKVQY-SQVEISDPLVAD 1378 (1669)
Q Consensus 1358 f~gia~~Q~-~~deALDaLrkg 1378 (1669)
|+-+.--.. .+.+...++|+.
T Consensus 397 YKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHH
Confidence 776655444 777888888765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.7e-05 Score=93.21 Aligned_cols=343 Identities=16% Similarity=0.106 Sum_probs=201.7
Q ss_pred ccccccccchhh----hhhhhhccc----hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000323 988 RQSSFFRSRNGV----LNKLKQVEL----SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1057 (1669)
Q Consensus 988 ~~~rYF~~~~d~----i~~le~~~~----d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~ 1057 (1669)
+...||....+. ..++|+... ..+.|=.+|+-+..-+.+ -+|.++++.++..- |.+..++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-----s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-----SKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-----hHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445566555555 337777663 339999999988877765 89999999999999 888888888877
Q ss_pred HHHhC-CCCchHHHHHHHHHhh--------CCCCHH-HHHHHHh---cCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000323 1058 IFYSN-TNSVGKDDMFSYSVKH--------NEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1124 (1669)
Q Consensus 1058 lY~~~-~~~eea~emlekAVel--------nP~NY~-LwlmYIn---sr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1124 (1669)
+++.. +..+++.+|-.||+.+ .|..|- ++..|-. +....+.|+.--.++++.|++.+...+.|
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 77754 4466788888888873 333333 3333322 23355566656688899998888776444
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC-CCCc---------------------------------ccchH
Q 000323 1125 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDR---------------------------------HSLFL 1170 (1669)
Q Consensus 1125 Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~-g~sE---------------------------------~~lSL 1170 (1669)
.++++++.--|..+++++.|.+...+.+. +. |.+. +.+--
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56777777777777777777776655554 21 1111 12222
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHh-hccchHH-Hhhhh---hhhhhhccCCCCcccchhhHHHHHHHH-----------
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIY-RKLPDAV-LQLLE---CEKELFAIDWPPVQLEDDEKQRAIKLI----------- 1234 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrY-rvLPGd~-y~q~e---~~KEAf~I~W~y~~vlk~EPdnalAL~----------- 1234 (1669)
-|+.+=++.+|+|-+=--|+|.+.+ +..++-- -...| +.|.-+.+ ...-.++-+..-..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL---ALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc---CcccccccchhhHHHHHHHHhhhhhcc
Confidence 3444445566666665556663333 2111100 00011 01111111 0000111111111111
Q ss_pred -------------------------HHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----H--HHHHHhcCHHHHHHHH
Q 000323 1235 -------------------------EMAVNSVELYSNGESLEKETNLRSAHCFAVNH----I--WCMAVLNGLECSMNLL 1283 (1669)
Q Consensus 1235 -------------------------smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----I--R~lI~LEDse~A~~Lf 1283 (1669)
.+|++++..+-+++..-.- =.++..-.++.+ + +.+...+..++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C-L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC-LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 2334444442332221000 001112223322 2 2223356899999999
Q ss_pred HHHHHhCCCchhH--HHHHHHHhhcccCCccH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1284 EKYIKLYPSCLEL--VLMKARLQKHDFGDLSS--VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1284 dklLk~~P~d~eL--~L~AAyL~~K~m~~~A~--svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
..++...|.++.. .|...+++... +.-+. ..+..|+.++|.|.. +|++|.......|+.++|..-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999 44444444443 44333 599999999999999 9999999999999999776533
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-06 Score=81.43 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=94.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1036 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1036 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
.+|.++++.+|++..+.+.++..|...+...++.++|+++++.+|.+.. ++..|...+ .|+.|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998866 667777777 8999999999
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..+.. ++. .++++.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877 555 89999999999999999999998887776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-06 Score=88.67 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=94.1
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1077 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~l-Y~~~~~--~eea~emlekAVe 1077 (1669)
..|+..|.+.+.|+.++.-++..+ +++.|+..|.+|++++|+++.+|+.|+.. |...+. ..++.++|++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g-----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRN-----DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 467778899999999999998775 46999999999999999999999999985 566665 4789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
.+|++-. |+..|...+ .|++|+..|+++....+++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 788888888 9999999999998887555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.4e-06 Score=83.86 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1036 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1036 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
.+|.+||+++|++ |+.++..+.+.+.-.++.++|.+|+.++|.++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5677888888775 556677777777777777888888888887777 555566666 7788888887
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..+..| +. -+.++.+..++...|+++.||..+.+...
T Consensus 83 ~Al~l~p-~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLDA-SH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcCC-CC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777763 43 67788888888888888888887766554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-05 Score=83.24 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
....+.++.+|..++..+ +++.|...|.++++.+|+++ .+|+.++.+|...++..++.+.|+++++..|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG-----DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 344588999998888764 46999999999999999987 6889999999999999999999999999999766
Q ss_pred H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh--h--------hHHHHHHHHHHHHHhcCHH
Q 000323 1084 A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA--C--------ILDLFLQMLQCFCMSGNTE 1146 (1669)
Q Consensus 1084 ~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa--~--------iLDILL~LvqLY~qSGnyd 1146 (1669)
. ++..|.+.........-.+++|++.|.+....+ |+....-. . +....+.+..+|...|+++
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 4 344454441111112236899999999999988 44311100 0 1112346788999999999
Q ss_pred HHHHHHHhhcc
Q 000323 1147 KAIQRISRLLI 1157 (1669)
Q Consensus 1147 KAI~tl~rLEq 1157 (1669)
+|+..+.++..
T Consensus 184 ~A~~~~~~al~ 194 (235)
T TIGR03302 184 AAINRFETVVE 194 (235)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8e-05 Score=96.49 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=160.3
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1077 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1077 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
-++|.|+. |..+|...+ .|++|+.+++.+.+.+ |+. +.+++++.-||.+.+++++|.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh-
Confidence 45666666 556676777 8899999998888888 677 88888888899999999999775
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHH----H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhh
Q 000323 1153 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1226 (1669)
Q Consensus 1153 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~i----Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~E 1226 (1669)
++.. +-..+.+. .+.. ++|.. + .-.++. +|..|...|..++++.+ |.++++-+
T Consensus 88 -~~l~--~~~~~~~~----~~ve----------~~~~~i~~~~~~k~Al~~-LA~~Ydk~g~~~ka~~~---yer~L~~D 146 (906)
T PRK14720 88 -NLID--SFSQNLKW----AIVE----------HICDKILLYGENKLALRT-LAEAYAKLNENKKLKGV---WERLVKAD 146 (906)
T ss_pred -hhhh--hcccccch----hHHH----------HHHHHHHhhhhhhHHHHH-HHHHHHHcCChHHHHHH---HHHHHhcC
Confidence 4443 11111100 1111 22211 1 112333 68889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 000323 1227 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH 1306 (1669)
Q Consensus 1227 PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K 1306 (1669)
|+|+.+|=.+| .+|+. . +.++|+.++.++++. |+..+
T Consensus 147 ~~n~~aLNn~A-Y~~ae-----------------------------~-dL~KA~~m~~KAV~~------------~i~~k 183 (906)
T PRK14720 147 RDNPEIVKKLA-TSYEE-----------------------------E-DKEKAITYLKKAIYR------------FIKKK 183 (906)
T ss_pred cccHHHHHHHH-HHHHH-----------------------------h-hHHHHHHHHHHHHHH------------HHhhh
Confidence 99999998875 34432 0 345555566665554 44444
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000323 1307 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1386 (1669)
Q Consensus 1307 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1386 (1669)
+ ..+...+|++.+..+|++.. .+.++++.....-....+..++.+-|..+.. ....++++++|+.....-+
T Consensus 184 q-~~~~~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--- 254 (906)
T PRK14720 184 Q-YVGIEEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--- 254 (906)
T ss_pred c-chHHHHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC---
Confidence 3 44555666666666666666 5555555555554455555555442222111 1144556666665433311
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcC
Q 000323 1387 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLIN 1454 (1669)
Q Consensus 1387 ~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp----~N~~i~cLNNYAYFLS~e 1454 (1669)
.+++ +.-+++.+. .+++.. ..-|+.+|+... ...|..|+.+|--++++.
T Consensus 255 -----~n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~ 307 (906)
T PRK14720 255 -----KNNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFD 307 (906)
T ss_pred -----cchh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeec
Confidence 2334 444554444 444444 556666665433 123566777766666553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-05 Score=82.13 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhhC
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae---aWy~yl~lY~~~--------~~~eea~emlekAVeln 1079 (1669)
+.|+.+|.-++.. ++++.|+..|.++++.+|+++. +|+.++.+|+.. +....+.+.|+++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877776 4579999999999999998887 688888888875 45667899999999999
Q ss_pred CCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000323 1080 EGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1138 (1669)
Q Consensus 1080 P~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL 1138 (1669)
|++-. ++.+|++.+ .|.+|+..|.+....+ |+ +....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~----~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PD----TPATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CC----CcchHHHHHHHHHH
Confidence 99843 345667777 8999999999998887 33 12347899999999
Q ss_pred HHHhcCHHHHHHHHHhhc
Q 000323 1139 FCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1139 Y~qSGnydKAI~tl~rLE 1156 (1669)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999777665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00031 Score=90.11 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
..|+..-.-||+ .++.-.|..-|++||.++|.+-.+|.-+...|...|..+.+...|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 566663333333 355689999999999999999999999999999999999999999999999998766 34
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~--iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
-|--..+ .|.+|+.+|......+ .+ +++++ +-+.++.+...+..+|=+.||..
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4433444 8999999997766554 22 35554 36788888888888888777766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=71.33 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCC
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP 1080 (1669)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999988887 56799999999999999999999999999999999 68899999999999998
|
... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0031 Score=75.45 Aligned_cols=311 Identities=15% Similarity=0.074 Sum_probs=219.2
Q ss_pred ccchHHHHHH-----HHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1006 VELSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1006 ~~~d~qlWLe-----lAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.+.....|.. -|.+.++..- -.-|+|.+|--++.++=+.-+.-..++..=+..=-++++...++.++.+|.+.
T Consensus 68 ~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~ 147 (400)
T COG3071 68 TPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL 147 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc
Confidence 3344466655 3455555543 23588999999999988888887777777777777888888899999999999
Q ss_pred CCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1079 NEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1079 nP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
.++.-. ....-++++ .|+.|+.-+.++.+.. |-. .+++..++++|..+|+|+..+..+.
T Consensus 148 ~~~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 148 AGDDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred CCCchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHHH
Confidence 765554 556778888 8999999998888887 444 7999999999999999999999777
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
.|....+-+++| +..+... .|..+ +++.... .-+..|
T Consensus 212 ~L~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~------------------~~~~gL 248 (400)
T COG3071 212 KLRKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDD------------------NGSEGL 248 (400)
T ss_pred HHHHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhcc------------------ccchHH
Confidence 777522222221 1111110 01111 1111000 000001
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS 1313 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~ 1313 (1669)
.+..+. +.. ..|.+....+.++..+|.+++.+.|..+....++..-+.- |.....++.-.+ +.+=+
T Consensus 249 ----~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l~ 314 (400)
T COG3071 249 ----KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPLI 314 (400)
T ss_pred ----HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHHH
Confidence 011110 000 2466677777888888999999999999999999887766 655555666665 77778
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcc
Q 000323 1314 VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPE 1393 (1669)
Q Consensus 1314 svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSD 1393 (1669)
...++.+...|+++. +|.-|-+.++.++.|.+|..-.+. ++....+ .+|
T Consensus 315 k~~e~~l~~h~~~p~----L~~tLG~L~~k~~~w~kA~~~lea-----------------Al~~~~s----------~~~ 363 (400)
T COG3071 315 KAAEKWLKQHPEDPL----LLSTLGRLALKNKLWGKASEALEA-----------------ALKLRPS----------ASD 363 (400)
T ss_pred HHHHHHHHhCCCChh----HHHHHHHHHHHhhHHHHHHHHHHH-----------------HHhcCCC----------hhh
Confidence 999999999999995 999999999999999999887743 2222211 123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1394 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1394 fy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
| .++++.+-+ .|...+|...++.+|-.
T Consensus 364 -~-----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 364 -Y-----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred -H-----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 4 889999999 99999999999999943
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=83.97 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhCCCCHHHHH----HHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~-eea~emlekAVelnP~NY~Lwl----mYInsr~slddrl~~Y 1103 (1669)
+.++.|+.++..+|++||.+..+|.....++...+.. +++.+.+.+|++.+|.||.+|. ++.+.+ . ..+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~----~--~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG----P--DAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC----c--hhh
Confidence 3458999999999999999999999999998888743 6789999999999999999875 333332 1 135
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++++.++..+.+.+ +.. -.+|..+.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 78899999999888 555 88999999999999999999998888875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0048 Score=70.49 Aligned_cols=321 Identities=12% Similarity=-0.055 Sum_probs=187.0
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINP---tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
|.....|.-+|..+..... .+.|...+.++++.+| +..+.++..+.++...+..+++.++++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGGE-----RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4445667777766655543 3444556666666666 5577888888888889988999999999999999998
Q ss_pred HHHH---HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1084 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1084 ~Lwl---mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
..+. .|..... +.+ ..+.+..++......+ ++. ...+..+..++...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLGD-FSG---MRDHVARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhcc-ccc---CchhHHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 3433332 123 3355555554433333 443 56677788899999999999998777765
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHH
Q 000323 1161 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1240 (1669)
Q Consensus 1161 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dY 1240 (1669)
..|. + .| ...+++.+|...|..+++... +.+.++..|......
T Consensus 143 --~~p~--------------~---~~--------~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~------- 185 (355)
T cd05804 143 --LNPD--------------D---AW--------AVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLR------- 185 (355)
T ss_pred --hCCC--------------C---cH--------HHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchh-------
Confidence 2331 1 11 123356667777777777665 444444333210000
Q ss_pred HhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH-----HHHHHhhcccCCccHH
Q 000323 1241 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL-----MKARLQKHDFGDLSSV 1314 (1669)
Q Consensus 1241 Y~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L-----~AAyL~~K~m~~~A~s 1314 (1669)
...=..+.+++...++.+.|+.+|++++...|....+ .+ ...++...+ ......
T Consensus 186 -------------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 186 -------------------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 0001122455566889999999999998777743333 22 222233332 233334
Q ss_pred HHHHHHHhCCCC-C-chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000323 1315 GFEEALIKWPKG-V-PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1392 (1669)
Q Consensus 1315 vle~AL~~~PkN-a-~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1392 (1669)
-|+.+....+.. . +.+...+.-.+...+..++.+.|..+..+--. .+.-. .... ....
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~-~~~~~-------~~~~--~~~~---------- 305 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG-RASSA-------DDNK--QPAR---------- 305 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcc-------Cchh--hhHH----------
Confidence 454444332111 0 33333444567778888899999988866111 00000 0000 0000
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000323 1393 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1393 Dfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1435 (1669)
.+ .+-.+...++|. +|+..+|......||...
T Consensus 306 --------~~-~~~~l~A~~~~~--~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 --------DV-GLPLAEALYAFA--EGNYATALELLGPVRDDL 337 (355)
T ss_pred --------hh-hHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 00 011445556667 999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00048 Score=85.62 Aligned_cols=304 Identities=18% Similarity=0.204 Sum_probs=200.8
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1101 (1669)
++.|+-+.|++.-.++|.+|+.+..+|..|+.+|..-++-.++..+|..|....|+|-.+| ++=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 4678889999999999999999999999999999888888899999999999999999844 4444455
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccc-------------
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSL------------- 1168 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~l------------- 1168 (1669)
.|+.....=-++.... +.. ..-|+-.+--+...|+|..|+..++..+++...+.+...+
T Consensus 124 d~~~~~~tr~~LLql~-~~~-------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ-------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5554444433334444 333 4556666666777899999999999998866533322111
Q ss_pred ----hHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH--------
Q 000323 1169 ----FLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1236 (1669)
Q Consensus 1169 ----SLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~sm-------- 1236 (1669)
++.+.+..|....++++ -.+.|....+++++..+..+||..+ |..++.-+|||......+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 12223333333333222 0455666778888888888888777 777777777775432211
Q ss_pred ----HH-HHHhh-----------------hcCCcchhhhh----------------------hhc---------------
Q 000323 1237 ----AV-NSVEL-----------------YSNGESLEKET----------------------NLR--------------- 1257 (1669)
Q Consensus 1237 ----A~-dYY~~-----------------~~ndesla~~~----------------------~~k--------------- 1257 (1669)
++ .-|.. +.+++++.... ++.
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 01 01110 01111111100 000
Q ss_pred --------------hhhHhHHHHHHHH-------HHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHH
Q 000323 1258 --------------SAHCFAVNHIWCM-------AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVG 1315 (1669)
Q Consensus 1258 --------------t~~~fKLN~IR~l-------I~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~sv 1315 (1669)
-.++-|...+.++ -..++.+.|..+.+.++..+|+=+++-+.-++|.+..+ .+.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0011122222221 12559999999999999999999999888888877654 6678888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1357 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f 1357 (1669)
+++|-+.+--+.- +=--++.+.++.+..++|..+|..|
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHHh
Confidence 8999988866665 2113567899999999999999773
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0018 Score=80.12 Aligned_cols=314 Identities=13% Similarity=0.148 Sum_probs=188.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH----HHHHHHhcCCCcccch
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1100 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~----LwlmYInsr~slddrl 1100 (1669)
...|+|++||++|+|.++.+-.+-+.-.....+-. ..-..++ ..++|...|. +|. .+..||..+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 34588999999999999999998877776544421 1111222 6677777776 555 788999999
Q ss_pred hhHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc--------------
Q 000323 1101 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-------------- 1159 (1669)
Q Consensus 1101 ~~YdkAI~aLe~l----as~-~~~Dr--~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~A-------------- 1159 (1669)
.|+.|++.|+.. -+. .+.|. ++-=..|-=|-+||+..+.+.|+.++|.+.+..+....
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999776 111 11222 12223444566888889999999999999777776511
Q ss_pred --cCCCC---cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1160 --TGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1160 --l~g~s---E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+.+.. ++++..++=..+.+..+.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 11111 112222344455666666666777777 444443 33444445543333322 222222222222211
Q ss_pred HHHHHHHHhh--hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHH--------HHHHhCCCchhH-HHH
Q 000323 1234 IEMAVNSVEL--YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSCLEL-VLM 1299 (1669)
Q Consensus 1234 ~smA~dYY~~--~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfd--------klLk~~P~d~eL-~L~ 1299 (1669)
+-.+.-.+.. ..+-..+-... .+.-....++-.++..|..++++.|+..+. .+.+.--.=.-+ .+.
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 1110000000 00000000000 011123344454666666779999998888 555544333344 666
Q ss_pred HHHHhhcccCCccHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1300 KARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1300 AAyL~~K~m~~~A~svle~AL~~~PkNa~---g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
+.|...++ ...|..+|++|+.-|-+... ...|.|-+++...++.|+..+|..+.++
T Consensus 425 ~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 425 ALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred HHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 77766665 77788999999998887766 7889999999999999999999999877
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00033 Score=86.84 Aligned_cols=362 Identities=17% Similarity=0.152 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
.|++|+.++++..+|++++|+..|...+. .+-|+ +.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~--------------------~I~Dk----------~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK--------------------QILDK----------LAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh--------------------hCCCH----------HHHHHHHHHHHHHcCC
Confidence 58999999999999999999996644332 12343 3345567888999999
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1288 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk 1288 (1669)
.+||..+ |..+++.+|+|....-.+. ...-. .. -+.-++.+...++|+.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---------------------~~---~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---------------------QL---QLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---------------------hc---ccccccHHHHHHHHHHHHH
Confidence 9999999 9999999999987665431 11100 00 0011133444444555544
Q ss_pred hCCCchhH-H-------------HHHHHHhh--cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChH----
Q 000323 1289 LYPSCLEL-V-------------LMKARLQK--HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHD---- 1348 (1669)
Q Consensus 1289 ~~P~d~eL-~-------------L~AAyL~~--K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d---- 1348 (1669)
.+|.+.-+ . ++..||.. ++ +..+..+-.+.|-.+|.....+..+-..|+...-..+.+.
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 44443332 1 12222211 11 2222221122222233333322222222222111111110
Q ss_pred -----HHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1349 -----FAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1349 -----~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
-..-|..-||.+--+... ..++|++.+.++..+.+. +-|+| ...+-+|-. .|+++
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 000111123333222222 444555555555444221 35667 677778877 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000323 1423 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1502 (1669)
Q Consensus 1423 EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~ 1502 (1669)
+|..++|.|-+.+... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888866 333445555655444 3555555433 3433221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000323 1503 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1582 (1669)
Q Consensus 1503 liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~ 1582 (1669)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 11112333334675 3444454443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000323 1583 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1650 (1669)
Q Consensus 1583 ~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1650 (1669)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.9e-05 Score=73.41 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=87.7
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
+..|.+...-+.+|..++.. |+++.|..+|..+++++|+++.+|+.++.+|...+....+..+|++|++.+|.+.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred cCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 34455556667777777766 5579999999999999999999999999999999988899999999999999986
Q ss_pred H----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1084 A----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1084 ~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
. ++..|...+ .+++|+..|....+.. |+
T Consensus 86 ~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~ 117 (135)
T TIGR02552 86 RPYFHAAECLLALG--------EPESALKALDLAIEIC-GE 117 (135)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-cc
Confidence 6 677788888 8999999998888877 44
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0023 Score=73.04 Aligned_cols=128 Identities=16% Similarity=0.064 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~---yl~lY~~~~~~eea~emlekAVelnP~NY~- 1084 (1669)
..+.+.-.|..+... |+++.|+.++.++|+.+|++..+|.. ++......+....+...++.+....|....
T Consensus 42 ~~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 42 ERERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence 345555556655554 45699999999999999999999883 222222223333344445444466666655
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++..|...+ .|++|+..+++..+.. |+. ..++..+.++|.+.|++++|+..+.+...
T Consensus 117 ~~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 117 LGMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 445777788 8899999999999988 443 57788999999999999999997766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.6e-05 Score=76.85 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=82.4
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHH
Q 000323 1013 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1088 (1669)
Q Consensus 1013 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwlm 1088 (1669)
|..++..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...++.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455554443 467899999999999999999999999999999999999999999999999999977 6678
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1089 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
|...+ .+++|+..|....+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 88888 8899999999988887 443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=78.66 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI 1107 (1669)
+..+..++-+-+...|++..+...++.+|+..|+..++..-|+++--++|++.. ++-|.+..+. .|++--
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-------~~e~~~ 286 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-------GCEQDS 286 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-------CHhhHH
Confidence 577888899999999999999999999999999888899999999999998877 7777777762 344444
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
..-|.+.+..+.. + .-|+.-.+++--.++|.-|+. +-..++.. +|+ .+..|
T Consensus 287 ~L~~~Lf~~~~~t---a-----~~wfV~~~~l~~~K~~~rAL~----~~eK~I~~-~~r-----~~~al----------- 337 (564)
T KOG1174|consen 287 ALMDYLFAKVKYT---A-----SHWFVHAQLLYDEKKFERALN----FVEKCIDS-EPR-----NHEAL----------- 337 (564)
T ss_pred HHHHHHHhhhhcc---h-----hhhhhhhhhhhhhhhHHHHHH----HHHHHhcc-Ccc-----cchHH-----------
Confidence 4445565544222 2 334455566667888888887 33333332 222 12222
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhc-cCCCCcccchhhHHHHHHHH-HHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFA-IDWPPVQLEDDEKQRAIKLI-EMAVNSVELYSNGESLEKETNLRSAHCFAVN 1265 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~-I~W~y~~vlk~EPdnalAL~-smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1265 (1669)
.|-|+++.+.++..+|.- . -.|.-|- .. .+.|+ -
T Consensus 338 ---------ilKG~lL~~~~R~~~A~IaF------------R~Aq~Lap~r-L~~Y~----------------------G 373 (564)
T KOG1174|consen 338 ---------ILKGRLLIALERHTQAVIAF------------RTAQMLAPYR-LEIYR----------------------G 373 (564)
T ss_pred ---------HhccHHHHhccchHHHHHHH------------HHHHhcchhh-HHHHH----------------------H
Confidence 345666777777666522 1 0111111 11 23333 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHH--hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000323 1266 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARL--QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1342 (1669)
Q Consensus 1266 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL--~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1342 (1669)
++-+|.+.+...+|+-+..-.++.-|.++.- .|+++-+ ..--|-++|...++++|.++|.-.+ +=+-+++...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~ 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQ 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHH
Confidence 4667777779999999999999999999987 7776443 3333567899999999999999999 6677799999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1343 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1343 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
..|.+..++.|+++++.-++ | |..--.|||.+-- .+.++
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~------------------------------D---------~~LH~~Lgd~~~A--~Ne~Q 488 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFP------------------------------D---------VNLHNHLGDIMRA--QNEPQ 488 (564)
T ss_pred hhCccchHHHHHHHHHhhcc------------------------------c---------cHHHHHHHHHHHH--hhhHH
Confidence 99999999999988554322 1 1122678998888 99999
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHH
Q 000323 1423 EARLAIDAALKAAASEHFKHCVRE 1446 (1669)
Q Consensus 1423 EAfaAYDKALkanp~N~~i~cLNN 1446 (1669)
||.+-|-+||..+|.+ ...+.-
T Consensus 489 ~am~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHHHhcCccc--hHHHHH
Confidence 9999999999999988 666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0025 Score=79.02 Aligned_cols=384 Identities=15% Similarity=0.110 Sum_probs=206.0
Q ss_pred hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHH-HHHhhhcCCC
Q 000323 1044 ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSV-LCRCASASDG 1119 (1669)
Q Consensus 1044 INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~a-Le~las~~~~ 1119 (1669)
.++.+.-+.-..++++|+.+.-.++.+-|++-++++-+.+. -..|- +-..|+.+ +.+.....+.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~------------a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL------------AVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH------------HHHHhhhHHHHHhccCCCc
Confidence 45555556666666666666666666777776666665555 11111 11222222 2222222222
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH---HHHhh
Q 000323 1120 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYR 1196 (1669)
Q Consensus 1120 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY---llrYr 1196 (1669)
+- -|.++-.+=.+.-.|+|.+||+ |+.+|.. .-+.-|..+|.+ -..| +--.+
T Consensus 173 ~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA~~----------~~~e~l~~~d~~----eEeie~el~~Ir 227 (652)
T KOG2376|consen 173 DS-------YELLYNTACILIENGKYNQAIE----LLEKALR----------ICREKLEDEDTN----EEEIEEELNPIR 227 (652)
T ss_pred ch-------HHHHHHHHHHHHhcccHHHHHH----HHHHHHH----------HHHHhhcccccc----hhhHHHHHHHHH
Confidence 22 5777888888899999999999 5543311 112223445554 2223 22235
Q ss_pred ccchHHHhhhhhhhhhhccCCCCcccchhhHHHH----HHHHHHHHHHHhhhcCCcchhhhh--hhchhhHhHH------
Q 000323 1197 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA----IKLIEMAVNSVELYSNGESLEKET--NLRSAHCFAV------ 1264 (1669)
Q Consensus 1197 vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna----lAL~smA~dYY~~~~ndesla~~~--~~kt~~~fKL------ 1264 (1669)
+.+.=+++..|..+|+..| |+.+++.+|-.. ++.-.+ . ++.++.....+. -.+-.+++++
T Consensus 228 vQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~NNL----v-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVNNL----V-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhcch----h-hhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 5667778888999999998 887766554333 322111 1 112222222211 0011111111
Q ss_pred --------HHHHHHH---H-hcCHHHHHHHHHHHHHhCCCch-hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHH
Q 000323 1265 --------NHIWCMA---V-LNGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1331 (1669)
Q Consensus 1265 --------N~IR~lI---~-LEDse~A~~LfdklLk~~P~d~-eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~ 1331 (1669)
+.++... . .+--.++++++-++-...|... ++.|..+++...+...++..++..-....|.+.-.+.
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111111 1 3366777777777666665543 3455555543333477889999999999999954333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hhhhccc--ccccchhhhcccCCCCCCCCCCC-------CCccccccc
Q 000323 1332 CIWNQYVEYALQNGRHDFAAELMDRWFH----SVWKVQY--SQVEISDPLVADMSHSSPESTST-------SDPEFSVSN 1398 (1669)
Q Consensus 1332 caW~QLIq~al~~en~d~Ai~Lc~~ff~----gia~~Q~--~~deALDaLrkgns~i~~es~s~-------~vSDfy~~~ 1398 (1669)
.-.+|+.+.+|++..|+++...|.. ++...+. ....++.++.....-. ++.++ ....-.++.
T Consensus 380 ---L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 380 ---LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHhcccc
Confidence 3348889999999999999996442 2222222 3333333333221110 00000 000000000
Q ss_pred ccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHH--
Q 000323 1399 RNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL-- 1475 (1669)
Q Consensus 1399 ~~Q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYL-- 1475 (1669)
-+.-.+|++ +=+....|+-+||..-||.-++++|+. .++|---..= ....|-++|+.|+..+.-..+..
T Consensus 455 ----~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~~~l~~v 526 (652)
T KOG2376|consen 455 ----IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPLKGLKAV 526 (652)
T ss_pred ----hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCcccchhc
Confidence 011245555 445567899999999999999999976 4444332222 12346789999998442222222
Q ss_pred --h----hhccccccc
Q 000323 1476 --D----RARSLPYLK 1485 (1669)
Q Consensus 1476 --D----TAWILf~~~ 1485 (1669)
| +.|+.+-++
T Consensus 527 dVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 527 DVDALEKSDGAKYSEA 542 (652)
T ss_pred CchHhhhccCcchhhh
Confidence 2 258888776
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=79.32 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1267 IWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1267 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
|..|.. ..+.|.|+..|+++|+++|.-..+ .|.+ -||++|+ ...|+..|.+|+.++|.+-. +|+=|-|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR----AWYGLGQ---- 406 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR----AWYGLGQ---- 406 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----HHhhhhH----
Confidence 445544 449999999999999999999999 4554 5789997 88999999999999999999 9976655
Q ss_pred cCChHHHHHHHHHHHHhhhhccc-----------------------ccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000323 1344 NGRHDFAAELMDRWFHSVWKVQY-----------------------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1400 (1669)
Q Consensus 1344 ~en~d~Ai~Lc~~ff~gia~~Q~-----------------------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1400 (1669)
|.+++.-=|-++.|+|+ +.++|+.-+++...... ...+-|
T Consensus 407 ------aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l----- 469 (559)
T KOG1155|consen 407 ------AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSAL----- 469 (559)
T ss_pred ------HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHH-----
Confidence 33333332223333332 66667766665522211 023334
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1401 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1401 Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
..||..+-+ .++.+||-.+|+++++.
T Consensus 470 ------~~LakLye~--l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 470 ------VRLAKLYEE--LKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ------HHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 778888888 78888899999988874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00023 Score=85.84 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
+..++|.-.|+|||.+||....+|..+++=|..+++...+.+.|++||+.||.+|. |+++|.-.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 34589999999999999999999999999999999999999999999999999998 889998877 444
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
=|+-.|-++..--|.| .-+|.+|-++|-..++.+.||.-+.|-.. -|+-++.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~kPnD--------sRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELKPND--------SRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcCCCc--------hHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHhHHH
Confidence 4666665555555456 46999999999999999999996665442 223333444444456777777666
Q ss_pred hhHH
Q 000323 1185 FWVC 1188 (1669)
Q Consensus 1185 AWL~ 1188 (1669)
|..+
T Consensus 485 Aa~~ 488 (559)
T KOG1155|consen 485 AAQY 488 (559)
T ss_pred HHHH
Confidence 6333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=84.84 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1103 (1669)
.|+|+.|+.+|.+||+.+|+++.+|+.++.+|...+...++...|++|++++|++.. ++..|...+ .|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg--------~~ 86 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE--------EY 86 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--------CH
Confidence 367899999999999999999999999999999999999999999999999998776 677888888 99
Q ss_pred HHHHHHHHHhhhcCCCC
Q 000323 1104 DAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~D 1120 (1669)
+.|+..|+++....+.+
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999887333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00085 Score=88.38 Aligned_cols=230 Identities=18% Similarity=0.272 Sum_probs=158.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000323 1069 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1148 (1669)
.+-|++-|.-+|++--+|.-|+.-...+. ..++|+.+.|++...-+.- ...--+-+|.+++.|+.+-|.-+..
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lels----EiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELS----EIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhh----hhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 36789999999999999999998775555 6689999999987643111 1223389999999999999976666
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000323 1149 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1228 (1669)
Q Consensus 1149 I~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1228 (1669)
..++.|.-+ . |..| ..|.. +..+|.-.++.++|-.+
T Consensus 1517 ~kVFeRAcq-----y------------------------cd~~-~V~~~-L~~iy~k~ek~~~A~el------------- 1552 (1710)
T KOG1070|consen 1517 KKVFERACQ-----Y------------------------CDAY-TVHLK-LLGIYEKSEKNDEADEL------------- 1552 (1710)
T ss_pred HHHHHHHHH-----h------------------------cchH-HHHHH-HHHHHHHhhcchhHHHH-------------
Confidence 665555554 1 1111 12333 23455555666555444
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHh
Q 000323 1229 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLELVLMKARLQ 1304 (1669)
Q Consensus 1229 nalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~--d~eL~L~AAyL~ 1304 (1669)
+.+ | .. +.-+.-++ .++..++..++-++|+.++.++|+.-|. -+++.=.-|.|+
T Consensus 1553 --l~~--m----~K--------------KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1553 --LRL--M----LK--------------KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred --HHH--H----HH--------------HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 111 1 11 11112222 2233434455779999999999999999 666644444555
Q ss_pred hccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-------------HHHhhhhccc--cc
Q 000323 1305 KHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--SQ 1368 (1669)
Q Consensus 1305 ~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-------------ff~gia~~Q~--~~ 1368 (1669)
-|++ ++.++..|+..|...||-.- .|+-||.+.+..++.+-+..|.+| ||+-+=.|-+ ..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 5554 88999999999999999999 999999999999999999999999 6766666555 24
Q ss_pred ccchhhh
Q 000323 1369 VEISDPL 1375 (1669)
Q Consensus 1369 deALDaL 1375 (1669)
++.++..
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 4444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.9e-05 Score=85.34 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000323 1012 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1084 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1084 (1669)
-..++|..+=+++. -+.++|.+|++.|..||+++|++++.|+.-+..|++.+.-+.+..-|++|++++| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 47788888888875 3578999999999999999999999999999999999999999999999999996 666
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
|++.|..++ .|++|+++|-....-. |+.
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 889999999 8999999997776666 776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0024 Score=79.41 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=71.3
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1267 IWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1267 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+.|... .++.++|+++.+++++.-|+.+++-+.-+++ ...+...+|...++.|..+++.+-- +=...+.+.++.
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHC
Confidence 444444 7799999999999999999999994444454 4444478999999999999999887 555568999999
Q ss_pred CChHHHHHHHHHH
Q 000323 1345 GRHDFAAELMDRW 1357 (1669)
Q Consensus 1345 en~d~Ai~Lc~~f 1357 (1669)
|.+++|..++..|
T Consensus 276 ~~~e~A~~~~~~F 288 (517)
T PF12569_consen 276 GRIEEAEKTASLF 288 (517)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=89.21 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
.-|.|+.|..+|.+|++..|+.+.++..++.+..+.+.-+++..-+++|++.+|+|.. ++......+ .
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~ 169 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------Q 169 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------c
Confidence 3577899999999999999999999999999999999999999999999999999999 666677777 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|++|+.+|+++.+.+ ++. .+.++.+.+++...|+.+.|...+.+-..
T Consensus 170 ~~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999977 666 89999999999999999999997776665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=85.41 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH----HHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L----wlmYInsr~slddrl~~Yd 1104 (1669)
++++.|+++|.+..+.+|+ +++.++.+|...++..++...+.+|++.+|.++.| +.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 4689999999999999975 67778999988888888999999999999999994 45566777 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.|+.+..++.... |+. .+.|..|+++|...|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998 565 8999999999999999999999887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=60.72 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1087 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl 1087 (1669)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777664 56799999999999999999999999999999999889999999999999998875 556
Q ss_pred HHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000323 1088 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1088 mYInsr~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
+|...+ .+++|+..+.+.....
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 777777 7899999987766554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0077 Score=74.60 Aligned_cols=284 Identities=14% Similarity=0.076 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1084 (1669)
+.++-.+.|..+.-.- +|..-+.++.-.||+||=...++...+..++..+++.+...+=-+-|+..|.+-.
T Consensus 243 ~~dll~~~ad~~y~~c-----~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGC-----RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcC-----hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3366666666666553 3577777777777777777777776666777777777666666666777776654
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++.+|.-.+ .|.+|+..|-....-. +.= -..|+...+-|.-.|..|+|++.+.+=-+. ..|..
T Consensus 318 Vg~YYl~i~--------k~seARry~SKat~lD-~~f-------gpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~h 380 (611)
T KOG1173|consen 318 VGCYYLMIG--------KYSEARRYFSKATTLD-PTF-------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCH 380 (611)
T ss_pred HHHHHHHhc--------CcHHHHHHHHHHhhcC-ccc-------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCc
Confidence 667777666 6777777775544433 221 345677777777777777777755432221 12332
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000323 1165 RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1243 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~ 1243 (1669)
. ...---+ .|-.++. ..|+..| ...|.+-|-+-+.-++.--=+|. ..+-.-|...|..|+.-...
T Consensus 381 l-P~LYlgm-ey~~t~n---~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---------~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 381 L-PSLYLGM-EYMRTNN---LKLAEKFFKQALAIAPSDPLVLHELGVVAYT---------YEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred c-hHHHHHH-HHHHhcc---HHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------HhhhHHHHHHHHHHHHHhhh
Confidence 2 1111111 1211111 2345554 44444444333333332111111 12223344444443211111
Q ss_pred hcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHH
Q 000323 1244 YSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEA 1319 (1669)
Q Consensus 1244 ~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~A 1319 (1669)
.+ +++. -.-|+ |+.-.+--++..++|+..|+++|.++|.++.. .+..-|..+++ .+.|+.-|.+|
T Consensus 447 -~~--------~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKa 515 (611)
T KOG1173|consen 447 -VL--------NEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKA 515 (611)
T ss_pred -cc--------cccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 11 1122 34444 32222222668899999999999999999999 55555545554 99999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1320 LIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1320 L~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
|.+.|+|.- + -+++..+++.
T Consensus 516 L~l~p~n~~----~-~~lL~~aie~ 535 (611)
T KOG1173|consen 516 LALKPDNIF----I-SELLKLAIED 535 (611)
T ss_pred HhcCCccHH----H-HHHHHHHHHh
Confidence 999999977 3 2455555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=65.44 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1015 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1015 elAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
.+|..++.. |+|+.|..+|..+++.+|.++.+|+.++.++..++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555554 678999999999999999999999999999999999999999999999999986
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0065 Score=75.99 Aligned_cols=110 Identities=20% Similarity=0.385 Sum_probs=75.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccch----hhHHHHHHHHHHh
Q 000323 1038 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRL----DAYDAALSVLCRC 1113 (1669)
Q Consensus 1038 LsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl----~~YdkAI~aLe~l 1113 (1669)
|..=|--||.+.-.|..|...-.+. ......-.||+|.+.=|.+|-||.-||+.|+.---.+ -+|+.--..||+.
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~s-p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAGS-PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHccC-ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 3444556899999999998885442 2445678899999999999999999997663222111 2333333334333
Q ss_pred hhc-CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1114 ASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1114 as~-~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.-- ++-+ -||+.-+++...+|++-.-..+++|-+.
T Consensus 95 lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALr 130 (835)
T KOG2047|consen 95 LVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALR 130 (835)
T ss_pred HHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 321 2223 3899999999999999988888887664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=81.30 Aligned_cols=239 Identities=15% Similarity=0.096 Sum_probs=137.5
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+++.|.+.+.|..|-.....-+.. ..|...|.+||++||++-++...|+-.|...+-...+..||.+=++..|.-
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 444456667777665544332222 566677777777777777777777777766666666777777776666654
Q ss_pred HHHHHHHHhcC----CCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1083 YALWLMYINSR----TPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1083 Y~LwlmYInsr----~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+++.---.+.. .++.+.. ...+-.+.|-+++...+ .| -||-..|-=||..+|+|++||..+.-.+
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~-~l~~i~~~fLeaa~~~~~~~D--------pdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSS-HLAHIQELFLEAARQLPTKID--------PDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred hhccccCccccccCCcCCCCHH-HHHHHHHHHHHHHHhCCCCCC--------hhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 43321111111 1223222 44555555555555552 23 4555666666666677777666333322
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH
Q 000323 1157 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1236 (1669)
Q Consensus 1157 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~sm 1236 (1669)
+ ..| ++...==.+
T Consensus 458 ~-----v~P--------------------------------------------------------------nd~~lWNRL 470 (579)
T KOG1125|consen 458 Q-----VKP--------------------------------------------------------------NDYLLWNRL 470 (579)
T ss_pred h-----cCC--------------------------------------------------------------chHHHHHHh
Confidence 2 222 221111111
Q ss_pred HHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccH
Q 000323 1237 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS 1313 (1669)
Q Consensus 1237 A~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~ 1313 (1669)
+ .- .+ -+.+++|++.|.++|++.|.-+-. -|.-++|.... -++|+
T Consensus 471 G------------------------------At-LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~ 518 (579)
T KOG1125|consen 471 G------------------------------AT-LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAV 518 (579)
T ss_pred h------------------------------HH-hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHH
Confidence 1 11 12 238899999999999999999988 77777877664 77999
Q ss_pred HHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1314 VGFEEALIKWPKGVP----G--IQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1314 svle~AL~~~PkNa~----g--~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
.-|..||.+.+++.. . ---+|..|=...+.-++.|.+.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 999999999998332 1 1236644433334445555455554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00029 Score=80.56 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
++.++|..+|.+|++-.+....+|..+|.+.+...++.. |...||.|++.-|.+..+|+.|++....++ ..+.|+
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~----d~~~aR 90 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN----DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC----cHHHHH
Confidence 457999999999998888899999999999888666666 999999999999999999999999886665 458999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+||+..+.. +.. .....+|-..++++..-|+++.+.....|+.+
T Consensus 91 ~lfer~i~~l-~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 91 ALFERAISSL-PKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHCCTS-SCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-Cch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887 342 01467999999999999999999887777765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00039 Score=80.54 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=94.3
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1077 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~---~eea~emlekAVe 1077 (1669)
.+|-+.|.|.+.|+.|+.-|+..+. ++.|+..|.+|+++.|+++++|--|+..++...+ ..++.++|.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~~~-----~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMALGR-----ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHhcc-----hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4778889999999999999999965 5999999999999999999999999888775554 4458999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++|.|.. |+.-|..++ .|.+|+...+.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 777788888 9999999999999988555
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.034 Score=69.59 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
+.|..+.+..+|.+|+..-|.+..+|..|...-..... ++.+++.|++|+.++--.|. ||.+||..... .. .
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-qk---s 166 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-QK---S 166 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-cc---c
Confidence 46778999999999999999999999999888765444 44599999999999987777 99999987621 11 4
Q ss_pred HHHHHHHHHHhhhc
Q 000323 1103 YDAALSVLCRCASA 1116 (1669)
Q Consensus 1103 YdkAI~aLe~las~ 1116 (1669)
+.+-..+|++..+.
T Consensus 167 ~k~v~~iyeRilei 180 (577)
T KOG1258|consen 167 WKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhh
Confidence 56667777666553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0064 Score=71.54 Aligned_cols=247 Identities=12% Similarity=0.093 Sum_probs=140.3
Q ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1264 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1264 LN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
+.++|-++. .+.++.|+.+++++++.+|.+.++|.+-..+..+-+ ..+++..+++|+..+|+|.+ +|+--...
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHH
Confidence 345666655 789999999999999999999999766555433322 46899999999999999999 66432222
Q ss_pred HHHcCC--hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhh
Q 000323 1341 ALQNGR--HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1418 (1669)
Q Consensus 1341 al~~en--~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lq 1418 (1669)
....+. ++.++.++.+ ++. + .+.-| ..+...|-++.. .
T Consensus 116 l~~l~~~~~~~el~~~~k-----------------al~-----~--------dpkNy--------~AW~~R~w~l~~--l 155 (320)
T PLN02789 116 AEKLGPDAANKELEFTRK-----------------ILS-----L--------DAKNY--------HAWSHRQWVLRT--L 155 (320)
T ss_pred HHHcCchhhHHHHHHHHH-----------------HHH-----h--------CcccH--------HHHHHHHHHHHH--h
Confidence 222222 1333333321 111 1 01212 234677778888 7
Q ss_pred cCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCc-----ccchhhhHHHHHHHHhh--hc-----ccccccc
Q 000323 1419 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKE-----GAPISWQLKLLNSYLDR--AR-----SLPYLKL 1486 (1669)
Q Consensus 1419 g~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~K-----AeqMS~~~KtVsTYLDT--AW-----ILf~~~~ 1486 (1669)
|++++|.+.|+++|+.+|.| ..+|+.-. |+......+.+ .+++.+..+.|..--+- || +|...+.
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N--~sAW~~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRN--NSAWNQRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCc--hhHHHHHH-HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 88999999999999999999 89998765 44332211211 23344443444222121 44 2222100
Q ss_pred cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHh
Q 000323 1487 LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1566 (1669)
Q Consensus 1487 lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll 1566 (1669)
+ . ++.+.+..+.++++......+--++-.+..+.. .........+-|+++ ...++....|+.+|.+|
T Consensus 233 -~--l---~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 233 -A--L---VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE------GLQPTAEFRDTVDTL-AEELSDSTLAQAVCSEL 299 (320)
T ss_pred -c--c---ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh------hhccchhhhhhhhcc-ccccccHHHHHHHHHHH
Confidence 0 0 122334444555555321111122222222211 011112244555555 66677889999999999
Q ss_pred hccCC
Q 000323 1567 NKDHN 1571 (1669)
Q Consensus 1567 ~k~~~ 1571 (1669)
.+++
T Consensus 300 -~~~d 303 (320)
T PLN02789 300 -EVAD 303 (320)
T ss_pred -HhhC
Confidence 5777
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=63.50 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
.|+++.|+.+|.++++.+|++.++++.|+.+|+..+...++.++|+++++.+|++-.+|.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999766665543
|
... |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=73.52 Aligned_cols=262 Identities=15% Similarity=0.073 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
+....+|-.|..+ |+|+.|..++.+||++ +-...+- +++.-|-.++ +++.+|.
T Consensus 200 ~~~~~La~~y~~~-----g~~e~A~~l~k~Al~~-------------l~k~~G~-----~hl~va~~l~----~~a~~y~ 252 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQ-----GRLEKAEPLCKQALRI-------------LEKTSGL-----KHLVVASMLN----ILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH-------------HHHccCc-----cCHHHHHHHH----HHHHHHH
Confidence 5555555555555 4468888888888877 1111111 1111111111 6889999
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1170 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSL 1170 (1669)
++. ++.+.+..|.+|++++++..... ....--++.-|..+|+.+|+++.|-..+.+-.. .-+
T Consensus 253 ~~~-k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----I~~----- 314 (508)
T KOG1840|consen 253 SLG-KYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----IYE----- 314 (508)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----HHH-----
Confidence 999 55555555555666555544433 233466788899999999999999885554442 100
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
+ ++.+...+=.+-|+. .+.++...+...++..+ +.-|+..|....+...
T Consensus 315 -~--~~~~~~~~v~~~l~~---------~~~~~~~~~~~Eea~~l------------------~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 315 -K--LLGASHPEVAAQLSE---------LAAILQSMNEYEEAKKL------------------LQKALKIYLDAPGEDN- 363 (508)
T ss_pred -H--hhccChHHHHHHHHH---------HHHHHHHhcchhHHHHH------------------HHHHHHHHHhhccccc-
Confidence 0 122222221112222 23344444444444443 3333333332122111
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-chhH-HHHHHHHhhcccCCccHHHHHHHH
Q 000323 1251 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--------PS-CLEL-VLMKARLQKHDFGDLSSVGFEEAL 1320 (1669)
Q Consensus 1251 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--------P~-d~eL-~L~AAyL~~K~m~~~A~svle~AL 1320 (1669)
-....++-|+-+.|...+..++|.++|.++++.- +. ...| .|..+|.+.++ ...|...|++++
T Consensus 364 ------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 364 ------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAK 436 (508)
T ss_pred ------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 1334566677777777889999999999999865 22 3445 88889988887 888999999999
Q ss_pred HhCCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1321 IKWPKGVP----GIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1321 ~~~PkNa~----g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+- +... .......-|+...-+.|+++.|++|...
T Consensus 437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 887 3322 4566666788888899999999999876
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00085 Score=77.79 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH------HHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL------MYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl------mYInsr~slddrl~ 1101 (1669)
....+....-|+.-|..||++++=|..|+.+|+..+.-..+...|.+|+++.|+|-.++. ||.... +
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-~------ 207 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-Q------ 207 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-c------
Confidence 344678888899999999999999999999999999999999999999999999999544 444432 1
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+-.+|..+|.++.+.. ++. ...+.+|.--+.++|+|..|+.++..|+.
T Consensus 208 ~ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 208 MTAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred ccHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3378888998888877 565 88999999999999999999999999997
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=75.20 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=116.7
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
-|+..|.....|+-+|.-|-...++ +.|...|.+||.++|++..|+-.|.-+.+.++..+++..+|++|++ +|.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~-----~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGEN-----DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCC
Confidence 6778888999999999999998877 9999999999999999999999999999999999999999999964 443
Q ss_pred CHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000323 1082 SYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1082 NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~r 1154 (1669)
-+. +.+.-++.+ ..+.|...|.+..... ++. .-.++.|.++....|+|-.|...+++
T Consensus 135 Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 135 YGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHHH
Confidence 333 667777776 5688888888777766 676 78899999999999999999999988
Q ss_pred hcc
Q 000323 1155 LLI 1157 (1669)
Q Consensus 1155 LEq 1157 (1669)
..+
T Consensus 199 ~~~ 201 (250)
T COG3063 199 YQQ 201 (250)
T ss_pred HHh
Confidence 886
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=66.89 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCHHHHHHHHHHHHHhCCCch--hH-HH--HHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCL--EL-VL--MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~d~--eL-~L--~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
.++...+..+++.+++.+|... .+ .| ...++..++ .++|...|+.++...|+. .+..-+++.|....+..|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCH
Confidence 4588999999999999999992 22 33 334444444 889999999999998666 44555788899999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|+.++.. .. +..+.+. +..++||+|.. +|++++|..+
T Consensus 102 d~Al~~L~~------------------~~----------~~~~~~~-----------~~~~~Gdi~~~--~g~~~~A~~~ 140 (145)
T PF09976_consen 102 DEALATLQQ------------------IP----------DEAFKAL-----------AAELLGDIYLA--QGDYDEARAA 140 (145)
T ss_pred HHHHHHHHh------------------cc----------CcchHHH-----------HHHHHHHHHHH--CCCHHHHHHH
Confidence 998888733 00 0011122 23789999999 9999999999
Q ss_pred HHHHH
Q 000323 1428 IDAAL 1432 (1669)
Q Consensus 1428 YDKAL 1432 (1669)
|++||
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99996
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=81.89 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1262 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1262 fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
=|......++..||.-+|+=+|+.+++..|++++.|++.-..+...- -..|+.+|+++|+++|+|.. +-+-|+-.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHH
Confidence 34443344456888888988999999999999999998888766653 45788999999999999999 76667777
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCC---------------CCCCCCCcccccccccchhh
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSP---------------ESTSTSDPEFSVSNRNQMDV 1404 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~---------------es~s~~vSDfy~~~~~Q~d~ 1404 (1669)
...++.-..|...+..|...-+.+.. ....--+.+..+.+.... +....+-+|++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ--------- 433 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ--------- 433 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH---------
Confidence 88888888999999999877655544 111000000000000000 00112456655
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1405 MFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1405 ~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
.-||.+||- .|.+++|...|+.||.-+|.+ .-.||.+-.-|.--. ..+|.+++
T Consensus 434 --~~LGVLy~l--s~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~---~s~EAIsA 486 (579)
T KOG1125|consen 434 --SGLGVLYNL--SGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGN---RSEEAISA 486 (579)
T ss_pred --hhhHHHHhc--chHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCc---ccHHHHHH
Confidence 566777776 999999999999999999999 999999998877533 23444555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=62.89 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH---
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--- 1083 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY--- 1083 (1669)
.+.++..|..++.+ |+++.|...|..+++.+|++ +.+++.++.+|...+...++.++|+.+++..|++.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 35677788888776 45799999999999999987 68999999999999999999999999999998852
Q ss_pred ----HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC
Q 000323 1084 ----ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1118 (1669)
Q Consensus 1084 ----~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~ 1118 (1669)
.++.+|...+ .+++|+..|.++...+|
T Consensus 77 ~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 77 DALLKLGMSLQELG--------DKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHHHCc
Confidence 1677888877 88999999999999884
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=56.47 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000323 1051 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1126 (1669)
Q Consensus 1051 aWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1126 (1669)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|.+..... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6888999999999999999999999999998744 667777776 8899999998888877 443
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1127 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1127 ~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+++..+..++...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999997776653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0031 Score=75.81 Aligned_cols=291 Identities=15% Similarity=0.097 Sum_probs=191.2
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+...|..||..|..|++..|.+++.|.--+..|+..+.-+++.--.++.|++.|+-.+ -..++..|-.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~ 128 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHL 128 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhh
Confidence 34567999999999999999999999999999988888777777777888888876554 1223446666
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1185 (1669)
|+..+....... .+. +.+..-+|+.++.++-+ . .+. ..
T Consensus 129 a~~~~i~A~~~~-~~~-------------------~~~~~anal~~~~~~~~--s--~s~--------------~p---- 166 (486)
T KOG0550|consen 129 ALSDLIEAEEKL-KSK-------------------QAYKAANALPTLEKLAP--S--HSR--------------EP---- 166 (486)
T ss_pred hhHHHHHHHHHh-hhh-------------------hhhHHhhhhhhhhcccc--c--ccC--------------Cc----
Confidence 666665544433 221 11123334443333332 1 111 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000323 1186 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1265 (1669)
Q Consensus 1186 WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1265 (1669)
-...|+.|-...|+..+...+|..+ ...+++.++.++.++.--
T Consensus 167 -----ac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vr----------------------------- 209 (486)
T KOG0550|consen 167 -----ACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVR----------------------------- 209 (486)
T ss_pred -----hhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhc-----------------------------
Confidence 1233455566677788888888888 888899999999888532
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhh----------cccCCccHHHHHHHHHhCCCCCc-hHH
Q 000323 1266 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQK----------HDFGDLSSVGFEEALIKWPKGVP-GIQ 1331 (1669)
Q Consensus 1266 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~----------K~m~~~A~svle~AL~~~PkNa~-g~~ 1331 (1669)
.+++.-+.+.+.++.-|.+.|.+.|.+-+. .+..-.|+. ++.-.+|-..|.+||.++|+|.. ...
T Consensus 210 -g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 -GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 223333335666677777777777777666 111111211 11133566889999999999998 666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH
Q 000323 1332 CIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL 1411 (1669)
Q Consensus 1332 caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD 1411 (1669)
|-|++-.- -++-++..+|+.-|.. |+. + .+-| +-++|--
T Consensus 289 lY~nra~v-~~rLgrl~eaisdc~~--------------Al~--------i---------D~sy---------ikall~r 327 (486)
T KOG0550|consen 289 LYGNRALV-NIRLGRLREAISDCNE--------------ALK--------I---------DSSY---------IKALLRR 327 (486)
T ss_pred HHHHhHhh-hcccCCchhhhhhhhh--------------hhh--------c---------CHHH---------HHHHHHH
Confidence 66665443 4567788888888854 221 1 1112 1277777
Q ss_pred HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000323 1412 SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1448 (1669)
Q Consensus 1412 ~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1448 (1669)
+.+.++.++++||..-|++|++..-+-.....|++=.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 7888889999999999999999888754577777644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0066 Score=75.44 Aligned_cols=244 Identities=20% Similarity=0.111 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhc-cchHHHhh
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRK-LPDAVLQL 1205 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrv-LPGd~y~q 1205 (1669)
.+-++..++..|..+|+|++|+. +...|+.- -|..|- ..| +++=.. -.|.+|+.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~----l~k~Al~~-------------------l~k~~G-~~hl~va~~l~~~a~~y~~ 253 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEP----LCKQALRI-------------------LEKTSG-LKHLVVASMLNILALVYRS 253 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----HHHHHHHH-------------------HHHccC-ccCHHHHHHHHHHHHHHHH
Confidence 38888889999999999999998 44322211 000111 111 111111 25666777
Q ss_pred hhhhhhhhccCCCCcccc--------hhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-------hhc----hhhHhHHHH
Q 000323 1206 LECEKELFAIDWPPVQLE--------DDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLR----SAHCFAVNH 1266 (1669)
Q Consensus 1206 ~e~~KEAf~I~W~y~~vl--------k~EPdnalAL~smA~dYY~~~~ndesla~~~-------~~k----t~~~fKLN~ 1266 (1669)
.++.+||..+ |...+ ++.|.-+..+.++|+-||+. |+-.-+... .++ .....+..+
T Consensus 254 ~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 254 LGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred hccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7777666666 55554 45889999999999888874 433322222 000 111111111
Q ss_pred ---HHHHHHhcCHHHHHHHHHHHHHhCC---Cchh--H-----HHHHHHHhhcccCCccHHHHHHHHHhC----CCCCch
Q 000323 1267 ---IWCMAVLNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PKGVPG 1329 (1669)
Q Consensus 1267 ---IR~lI~LEDse~A~~LfdklLk~~P---~d~e--L-----~L~AAyL~~K~m~~~A~svle~AL~~~----PkNa~g 1329 (1669)
...+...++.++|..|+.++++.+- .+.+ + -|...|+.+.+ ..+|...|++|+++. =+...+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChh
Confidence 1111113366667766666666542 2222 2 33334444443 566666667666665 222223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHH
Q 000323 1330 IQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1409 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1409 (1669)
..-.-+||.....+.+++..|-++..+ +.+++ +.-.+ ..-|++|.|.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~~~g~------------------~~~~~~~~~~ 454 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-KLCGP------------------DHPDVTYTYL 454 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-HHhCC------------------CCCchHHHHH
Confidence 222233455544555566655555533 44444 22111 1225677899
Q ss_pred HH--HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1410 NL--SLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1410 GD--~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
|+ .|-. +|++++|+..-++++.|..
T Consensus 455 nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 455 NLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 99 4555 9999999999999997765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=77.52 Aligned_cols=221 Identities=15% Similarity=0.156 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
|...-.|+..+.-|++-+.+ ..|...|++|-.+||+=..+|..|++.|...++-+.+...|.+|.++=|+.+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~-----seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKY-----SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred CCCCcchhhHHHHHHHhcCc-----HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 34445677777777776443 77777777777777777777777777777777777777777777777777765
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH-HHhcCHHHHHHHHHhhcccccC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF-CMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY-~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
++.-|-... .+..|-.+|.++.+..|.|- +.+--+-+. -..+.|.+|+. +++.++.
T Consensus 384 LYlgmey~~t~--------n~kLAe~Ff~~A~ai~P~Dp---------lv~~Elgvvay~~~~y~~A~~----~f~~~l~ 442 (611)
T KOG1173|consen 384 LYLGMEYMRTN--------NLKLAEKFFKQALAIAPSDP---------LVLHELGVVAYTYEEYPEALK----YFQKALE 442 (611)
T ss_pred HHHHHHHHHhc--------cHHHHHHHHHHHHhcCCCcc---------hhhhhhhheeehHhhhHHHHH----HHHHHHH
Confidence 445555444 56777777777777775453 222222222 23566777776 5543331
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000323 1162 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1241 (1669)
Q Consensus 1162 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY 1241 (1669)
- +. ........|-.- ...+|..|-..++..||+.. +++++...|.++-.+.+.|
T Consensus 443 ~----------ik---~~~~e~~~w~p~------~~NLGH~~Rkl~~~~eAI~~---~q~aL~l~~k~~~~~asig---- 496 (611)
T KOG1173|consen 443 V----------IK---SVLNEKIFWEPT------LNNLGHAYRKLNKYEEAIDY---YQKALLLSPKDASTHASIG---- 496 (611)
T ss_pred H----------hh---hccccccchhHH------HHhHHHHHHHHhhHHHHHHH---HHHHHHcCCCchhHHHHHH----
Confidence 1 00 112222234322 22356666666777777777 6777666666666655532
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000323 1242 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1305 (1669)
Q Consensus 1242 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1305 (1669)
-++..++.++.|++-|.+.|.+.|.|.-+ .|....|+.
T Consensus 497 --------------------------~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 --------------------------YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred --------------------------HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 33445778999999999999999999877 555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=76.27 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000323 1265 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1342 (1669)
Q Consensus 1265 N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1342 (1669)
.+|+++-..++.+.|+.+|.++++..+.+.+|++..|.|+.... +..|+.+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 44666555778999999999999877788999999999987743 33489999999999999999 9999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcC
Q 000323 1343 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1420 (1669)
Q Consensus 1343 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~L~q~Lqg~ 1420 (1669)
..++.+.|..|.++++..++.... + ..||+ +-|+...|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~-----------------------------------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQ-----------------------------------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHH-----------------------------------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhH-----------------------------------H----HHHHHHHHHHHHHcCC
Confidence 999999999999773322111110 1 33444 556667899
Q ss_pred HHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000323 1421 WNEARLAIDAALKAAAS-EHFKHCVREH 1447 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~-N~~i~cLNNY 1447 (1669)
++.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=81.40 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1353 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1353 (1669)
-..+++.=+..++.-||.+++.....+++ +..+-.++|...|+.+++..|++.. +|.-++....+.+.+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 34455555566778888888884444443 3333378888888888888888888 888888888888888888888
Q ss_pred HHHHH------------Hhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1354 MDRWF------------HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1354 c~~ff------------~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++.+ ++++-.+. +.++|.+++++...+.+ |+ .. ++++.+.--.-.|+
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---------~~-----~~-----~~~~~a~~l~~~G~ 203 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP---------EF-----EN-----GYVGWAQSLTRRGA 203 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---------Cc-----HH-----HHHHHHHHHHHcCC
Confidence 88833 33333333 88888888887754421 10 11 55665444333799
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000323 1421 WNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1477 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS--------~--e~~dL~KAeqMS~~~KtVsTYLDT 1477 (1669)
.++|.++|++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 204 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999999999999987 566666654332 2 333344445555545566555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=77.58 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
..|--.|..++-- +.+|.|+..|.-.+...|+|+-.|-....++...++..++.++|++|+.+.|++.+||.+|.
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555555555544 44699999999999999999999999999999999999999999999999999999666555
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1163 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~ 1163 (1669)
+--...+ .+.+||.+|-+..... |+. -+.|.+|.+-|..+|+..+|..... |.-+..|.
T Consensus 382 ~all~~g----~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~A--E~~~~~G~ 440 (484)
T COG4783 382 QALLKGG----KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLARA--EGYALAGR 440 (484)
T ss_pred HHHHhcC----ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHHH--HHHHhCCC
Confidence 4332222 6789999998888888 454 7999999999999999988876443 33335554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.021 Score=72.88 Aligned_cols=328 Identities=17% Similarity=0.099 Sum_probs=173.2
Q ss_pred cceecCCccccccccccchhhhhhhhhccchH--HHHHHHHHHHhcccc-cc---hhhHHHHHHHHHHHHHhCCCCHHHH
Q 000323 979 RIECIGSWNRQSSFFRSRNGVLNKLKQVELSN--EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILW 1052 (1669)
Q Consensus 979 ri~~~~~~~~~~rYF~~~~d~i~~le~~~~d~--qlWLelAl~~Lnq~~-n~---~g~ydAALdLLsrALEINPtSaeaW 1052 (1669)
.++-++.+.+-.-|=+.--++. ..+.+-..- ++.+-.|++-..... ++ .....+++..|.+|++.+|+++-+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~-~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLL-GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4555544444444544222222 333333333 444444444444433 33 3447899999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc---ch-
Q 000323 1053 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE---MH- 1123 (1669)
Q Consensus 1053 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr---~~- 1123 (1669)
|+++.-|.-+.+-..+.++++.|.++++.... |++..--++ .|..|+.+......-+ +++ ++
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--------r~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--------RLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 99999999888888899999999999877666 555555566 5566666665554444 331 00
Q ss_pred ---h------hhhhHHHHHHHHHHHHHhcCHHHHHHH------HHhhcccccCCCCcccchHHHHHHhhccCCcchh---
Q 000323 1124 ---A------SACILDLFLQMLQCFCMSGNTEKAIQR------ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--- 1185 (1669)
Q Consensus 1124 ---~------Sa~iLDILL~LvqLY~qSGnydKAI~t------l~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A--- 1185 (1669)
. ---.+|....++.|.-...-++.++.. -.++-. +...... .++.++-..-+-....+.+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l-a~~q~~~-a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL-ALSQPTD-AISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc-Ccccccc-cchhhHHHHHHHHhhhhhcccc
Confidence 0 013466777777766633333332221 111110 0000111 1111111111111111111
Q ss_pred ---------------hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1186 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1186 ---------------WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
|+.- ..--.+-++.++-.+-.++++.. ..+..+.+|.-+......| ..+.. .++..-
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~---~~lwllaa~~~~~~~~~~~a~~C---L~Ea~~~~~l~~~~~~~~G-~~~~~-~~~~~E 702 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLL---QKLWLLAADLFLLSGNDDEARSC---LLEASKIDPLSASVYYLRG-LLLEV-KGQLEE 702 (799)
T ss_pred cccCcccccCCCCchHHHH---HHHHHHHHHHHHhcCCchHHHHH---HHHHHhcchhhHHHHHHhh-HHHHH-HHhhHH
Confidence 2111 11111234445555555555443 3344444555555554433 22222 222221
Q ss_pred hhhhh--------hchhhHhHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHH
Q 000323 1251 EKETN--------LRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEA 1319 (1669)
Q Consensus 1251 a~~~~--------~kt~~~fKLN~IR~lI~LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~A 1319 (1669)
+.+.. ..+...+.+ ..++...| ..-+.+.++.-+++..|.|.+.|.+..-+.++.+ ...|..-|+.|
T Consensus 703 A~~af~~Al~ldP~hv~s~~Al--a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTAL--AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHH--HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 11110 011111111 12222233 4555566999999999999999999999877775 66888999999
Q ss_pred HHhCCCCCc
Q 000323 1320 LIKWPKGVP 1328 (1669)
Q Consensus 1320 L~~~PkNa~ 1328 (1669)
++.++.++-
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999998875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0036 Score=71.80 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1009 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~-Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
+...|...|+.+ +.. ++|+.|+..|...++.+|++ +.+||.++.+|+..+...++...|+++|+..|++.+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 567888888876 444 56799999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1085 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1085 -------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++..|...+ .+++|+.+|++..+.+ |+
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~ 249 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PG 249 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cC
Confidence 556677777 8899999999999999 55
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0091 Score=73.09 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKDDMFSYSV 1076 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrAL---EINPtSaeaWy~yl~lY~~~----~-~----~eea~emlekAV 1076 (1669)
+.||..++.+--... ...+..++|+.+|.+|+ ++||.-+.+|..++..+..+ . . -.++.+.-++||
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 678776644443332 34567899999999999 99999999988887776644 1 1 234778999999
Q ss_pred hhCCCCHH-HHHH---HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1077 KHNEGSYA-LWLM---YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1077 elnP~NY~-Lwlm---YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
+++|.+-. +|.+ +...+ .++.|+..|+++..-+ |+- -+++++..-+..+.|+.+.|+..+
T Consensus 332 eld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999888 4433 22333 4689999999888888 565 899999999999999999999988
Q ss_pred Hhhc
Q 000323 1153 SRLL 1156 (1669)
Q Consensus 1153 ~rLE 1156 (1669)
++-+
T Consensus 396 ~~al 399 (458)
T PRK11906 396 DKSL 399 (458)
T ss_pred HHHh
Confidence 8743
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.057 Score=69.50 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=174.7
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhhC
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-------~eea~emlekAVeln 1079 (1669)
++...+|++++...+.-... +....+..+|.+||- |-+++.+|.+|+.|++..++ .......|++|++.-
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 45558999999777766543 566889999999985 55899999999999987665 223568899998776
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000323 1080 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1151 (1669)
Q Consensus 1080 P~NY~----LwlmYInsr~slddrl~~Ydk----AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1151 (1669)
-.-+. +|.||+... ..+.|.. .+.++....... -|- +.-+|-+.-+.--=+-..+..++++|.++
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-~D~-~~~~~~~~~~sk~h~~~~~~~~~~~a~~~ 293 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-LDE-DTRGWDLSEQSKAHVYDVETKKLDDALKN 293 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-chh-hhhHHHHHHHHhcchHHHHhccHHHHHHH
Confidence 33333 999999987 2223333 444444433332 231 11111111111112233456788888888
Q ss_pred HHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCC----C
Q 000323 1152 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWP----P 1219 (1669)
Q Consensus 1152 l~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~----y 1219 (1669)
+..++... .... +.--.+.+.|+..-|-|+. -..-+| ..++..-++.|+...=-...-|.++=. +
T Consensus 294 l~~~~~~~--e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 294 LAKILFKF--ERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHH--HHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 77766511 1111 2222333333333333222 222222 222222233332221111111111000 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhcCCcch-----------------hhhhhhchhhHhHHHHHHHHHH-hcCHHHHHH
Q 000323 1220 VQLEDDEKQRAIKLIEMAVNSVELYSNGESL-----------------EKETNLRSAHCFAVNHIWCMAV-LNGLECSMN 1281 (1669)
Q Consensus 1220 ~~vlk~EPdnalAL~smA~dYY~~~~ndesl-----------------a~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~ 1281 (1669)
...+... -....|++-|.=..+ -+.++. +......--.||++-....|.. -+.++.|..
T Consensus 371 ~ra~R~c-p~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~ 447 (881)
T KOG0128|consen 371 PRAVRSC-PWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE 447 (881)
T ss_pred chhhcCC-chHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 1111111 111222221100000 000000 0000001113344433444433 337778888
Q ss_pred HHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 000323 1282 LLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHDFAAELMDRW 1357 (1669)
Q Consensus 1282 LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~c-aW~QLIq~al~~en~d~Ai~Lc~~f 1357 (1669)
+|...+.. .+.+..+ +..--++...+..+.++.+|..++. ...+-.+ +|.+++++..+-++...+..+.++
T Consensus 448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt----y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~- 522 (881)
T KOG0128|consen 448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT----YGGGSIAGKWLEAINLEREYGDGPSARKVLRK- 522 (881)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc----CCcchHHHHHHHHHhHHHHhCCchhHHHHHHH-
Confidence 88887765 5555555 3333444444447888888877643 4444455 999999999999999998875544
Q ss_pred HHhhhhccc-ccccchhhhc
Q 000323 1358 FHSVWKVQY-SQVEISDPLV 1376 (1669)
Q Consensus 1358 f~gia~~Q~-~~deALDaLr 1376 (1669)
+|.+. ..+.+.+++.
T Consensus 523 ----ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 523 ----AYSQVVDPEDALEVLE 538 (881)
T ss_pred ----HHhcCcCchhHHHHHH
Confidence 55555 3333444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00074 Score=63.23 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
.++|+.|+.+|.++++.+|+ +..+|+.++..|++.++-..+.+.+++ .+++|.+.. ++..|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 36799999999999999996 578899999999999999999999999 788887755 667788888
Q ss_pred hHHHHHHHHHH
Q 000323 1102 AYDAALSVLCR 1112 (1669)
Q Consensus 1102 ~YdkAI~aLe~ 1112 (1669)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999976
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0019 Score=58.20 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1087 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl 1087 (1669)
++++.|+.++.++++++|+++.+|+.++.+|...+...++.+.|+++++++|++-..-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999998877433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=67.81 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHhCCCC-chHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-PTSEILWITYL-LIFYSNTNS-VGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl-~lY~~~~~~-eea~emlekAVelnP~NY~ 1084 (1669)
+-+++=|..|-.+|.++ ++..|..+|.--=.-| .+.+.+-..|. ..|.+.+.+ ..++.|-..|+..+-.|-.
T Consensus 417 la~dlei~ka~~~lk~~-----d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 417 LAIDLEINKAGELLKNG-----DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhhhhhHHHHHHhcc-----CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 44466677777777764 4688888876544333 34444444554 444444433 2366777777755533322
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
...|.+...=- --.|++|.++|-++.... +-|++.|+-+---+-..|+.+.|+.-+.+|-.--++ +
T Consensus 492 ---a~~nkgn~~f~-ngd~dka~~~ykeal~nd--------asc~ealfniglt~e~~~~ldeald~f~klh~il~n--n 557 (840)
T KOG2003|consen 492 ---ALTNKGNIAFA-NGDLDKAAEFYKEALNND--------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--N 557 (840)
T ss_pred ---HhhcCCceeee-cCcHHHHHHHHHHHHcCc--------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--h
Confidence 12233321110 015799999997665432 234777777777888999999999966665531122 2
Q ss_pred cccchHHHHHHhhccCCcchh
Q 000323 1165 RHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~A 1185 (1669)
- +...+..-+|+.+.|...|
T Consensus 558 ~-evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 558 A-EVLVQIANIYELLEDPAQA 577 (840)
T ss_pred H-HHHHHHHHHHHHhhCHHHH
Confidence 2 3444444455555555333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0087 Score=57.12 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
+.++|..+..+...++..++.+.|+++++..|++. .++..|...+ .|+.|+..|..+...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999998762 2777888888 89999999999888763221
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1122 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1122 ~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
...++++.+..+|...|++++|+..+.++..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 74 -----KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred -----cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 2267899999999999999999999988875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=71.49 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
++-.+|+.+|..+-.+=|+++.++..|+.+|-+-+.++.+.+++-....+-|.|.. |+.+||... -.+
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~e 643 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FSE 643 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HHH
Confidence 34488999999999999999999999999999999888888888888899999975 889999988 679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+||..||+++--. |.. .-+-+..+-|+.++|||++|+.++..+-
T Consensus 644 kai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 644 KAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999988776 553 4556677889999999999999776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=61.95 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.....+..+|..+... |+++.|+..|.++++++|+. +.+|+.++.+|...+..+.+..+|++|++..|.+..
T Consensus 33 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3345566666666554 56799999999999998874 579999999999999999999999999999998877
Q ss_pred ----HHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC
Q 000323 1085 ----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1085 ----LwlmYInsr~------slddrl~~YdkAI~aLe~las~~ 1117 (1669)
++.+|...+. .+...+..|++|++++.+..+..
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566665541 12333344677777777766655
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.014 Score=61.31 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
...|+.++..+... |+++.|+..|.+|+++.|+. +.+|+.++.+|...+..+++.++|++|++..|.+..
T Consensus 35 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 47778887777655 45799999999999998773 459999999999999999999999999999988766
Q ss_pred --HHHHHHhcC------CCcccchhhHHHHHHHHHHhhhcC
Q 000323 1085 --LWLMYINSR------TPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1085 --LwlmYInsr------~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
++.+|.+.+ ..+...+..|++|+.+|++.....
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555322 123333445778888888887777
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0057 Score=71.29 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000323 1260 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1337 (1669)
Q Consensus 1260 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QL 1337 (1669)
..+|.. .--+...++.++|+..|.+++++.|+++-+ .=.++|++.. +-+.|+..++.||.++|.... +|
T Consensus 82 E~LK~e-GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~ysk----ay--- 152 (304)
T KOG0553|consen 82 ESLKNE-GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSK----AY--- 152 (304)
T ss_pred HHHHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHH----HH---
Confidence 334443 333344568889999999999999999888 5566666666 488888888999999988777 54
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh
Q 000323 1338 VEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL 1417 (1669)
Q Consensus 1338 Iq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~L 1417 (1669)
+=||.+|+-
T Consensus 153 ---------------------------------------------------------------------~RLG~A~~~-- 161 (304)
T KOG0553|consen 153 ---------------------------------------------------------------------GRLGLAYLA-- 161 (304)
T ss_pred ---------------------------------------------------------------------HHHHHHHHc--
Confidence 557888888
Q ss_pred hcCHHHHHHHHHHHHhhccCC
Q 000323 1418 QNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1418 qg~~~EAfaAYDKALkanp~N 1438 (1669)
.|+++||..||-|||..+|+|
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0058 Score=73.92 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.++-+|.-++..+. -..|..++.++|..+|.+++++...+.++.++++.+.|....++||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~~~-----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLMNE-----EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhcCc-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 566667777665443 278999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
..|+..+ .|+.|+.+|..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 8999999 999999999776543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.019 Score=59.12 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCccc
Q 000323 1029 EGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNH 1098 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~sldd 1098 (1669)
++.+.+-..+...++-+|++ .-+++.++..++..+.-+++...|+.+++..|+... |+.+|+..+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----- 99 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----- 99 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 44577777899999999999 778888999999999999999999999999877643 788899999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1099 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1099 rl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.|++|+..|... ... + +--.++..+-++|...|++++|+..+
T Consensus 100 ---~~d~Al~~L~~~-~~~-~-------~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 100 ---QYDEALATLQQI-PDE-A-------FKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred ---CHHHHHHHHHhc-cCc-c-------hHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999552 111 1 11446778999999999999999855
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=73.19 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=71.7
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
-|+..+.+.+.|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+..+...++..+|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556677889999999888876 56799999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000323 1082 SYAL 1085 (1669)
Q Consensus 1082 NY~L 1085 (1669)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 9884
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=3 Score=53.11 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.+..+++..+|...|--.|.---.|-.|+.+.++.++-.....-|+++|+--|-+-.||.-|++.---.-+.- +.-.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~---~~lr 134 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDP---ETLR 134 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 3445999999999999999999999999999999999999999999999999999999999998663333332 4456
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..||++.... . .+|..--+|-..+.....++++......+.||..
T Consensus 135 ~~fe~A~~~v--G---~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYV--G---LDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhc--c---cchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6666665554 2 3456667888889999999999999999999995
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.27 Score=56.44 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHhccc--c-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1009 SNEQCVEMALLILNQD--A-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~--~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
+.+..|+.|.+.+... . ....+|+.|.++|.+| +..|...+.-.++-++|++|.+..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~-- 65 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCY-- 65 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHH--
Confidence 3466788899998854 1 1346889988888776 777777888888888999886543
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000323 1082 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1082 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
.+.+..+ +.-..|..|..+|.+. . ++ ...+.+...+++|...|+...|-..+.+|-.
T Consensus 66 --------~~~~~~~-~Aa~~~~~Aa~~~k~~---~-~~------~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~---- 122 (282)
T PF14938_consen 66 --------EKLGDKF-EAAKAYEEAANCYKKG---D-PD------EAIECYEKAIEIYREAGRFSQAAKCLKELAE---- 122 (282)
T ss_dssp --------HHTT-HH-HHHHHHHHHHHHHHHT---T-HH------HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH----
T ss_pred --------HHcCCHH-HHHHHHHHHHHHHHhh---C-HH------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 3333100 0111344444444222 1 11 2356777778888888888877664333221
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000323 1162 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1241 (1669)
Q Consensus 1162 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY 1241 (1669)
+ |...+ .+++.|+.++..|+++|
T Consensus 123 -------------~-------------------ye~~~-------------------------~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 123 -------------I-------------------YEEQL-------------------------GDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -------------H-------------------HCCTT---------------------------HHHHHHHHHHHHHHH
T ss_pred -------------H-------------------HHHHc-------------------------CCHHHHHHHHHHHHHHH
Confidence 0 11110 24588888999999999
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-------HHHHH--HHhhcccCCcc
Q 000323 1242 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------VLMKA--RLQKHDFGDLS 1312 (1669)
Q Consensus 1242 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-------~L~AA--yL~~K~m~~~A 1312 (1669)
+. .+. ........++...+++.+++.++|+++|+++.+.+-....+ .|.+. +|...+ +..|
T Consensus 146 ~~-e~~--------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A 215 (282)
T PF14938_consen 146 EQ-EGS--------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAA 215 (282)
T ss_dssp HH-TT---------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HH-CCC--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHH
Confidence 86 221 22334455565666677889999999999999987654322 23333 333333 6678
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1313 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1313 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
...|+.....+|.=...-.|....=|--+++.+|.+..-..+..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999866554455555555566777776665555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=1 Score=58.77 Aligned_cols=317 Identities=11% Similarity=-0.011 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1090 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPt---------SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYI 1090 (1669)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|++..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4568888888888765332 1233344566677788888899999999986554432 344455
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1170 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSL 1170 (1669)
..+ .|++|+..|++..... ... .......-.+..+..++...|+++.|+..+.+....+...
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------- 564 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-------- 564 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------
Confidence 555 6788888887765543 111 0112223356677888899999999999665554311110
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
+..........+ .+.+.++...|...+|. .++..|...+.. .+.
T Consensus 565 ---------~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~------------------~~~~~al~~~~~-~~~--- 608 (903)
T PRK04841 565 ---------HLEQLPMHEFLL-----RIRAQLLWEWARLDEAE------------------QCARKGLEVLSN-YQP--- 608 (903)
T ss_pred ---------ccccccHHHHHH-----HHHHHHHHHhcCHHHHH------------------HHHHHhHHhhhc-cCc---
Confidence 110001111111 11244444444444443 333333222221 110
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhH-----HHHHHHHhhcccCCccHHHHHHHHHh
Q 000323 1251 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1322 (1669)
Q Consensus 1251 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d---~eL-----~L~AAyL~~K~m~~~A~svle~AL~~ 1322 (1669)
......-....+.+...++.+.|...+..++...+.. ... .+...++...+..+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0001111122233334778999999998887654322 111 11222323333244555555554432
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000323 1323 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1402 (1669)
Q Consensus 1323 ~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~ 1402 (1669)
.+.........+..+....+..+++++|..++.+... ..+..... .
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--------------~~~~~g~~--------------------~ 728 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--------------NARSLRLM--------------------S 728 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHHhCch--------------------H
Confidence 2222211222345667778888999999988766322 21111100 0
Q ss_pred hhHH--HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000323 1403 DVMF--GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1441 (1669)
Q Consensus 1403 d~~f--a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1441 (1669)
+.+. ..++.+|+. .|+.++|..++.+||.......+.
T Consensus 729 ~~a~~~~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 729 DLNRNLILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 1111 455666766 999999999999999988876554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.018 Score=66.26 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=82.7
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCC
Q 000323 1048 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1119 (1669)
Q Consensus 1048 SaeaWy~yl~l-Y~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~ 1119 (1669)
++..||..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|++|+..|...++.+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888664 455677778999999999999987 66889999999 9999999999999988 4
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1120 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1120 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+ |....|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 345699999999999999999999998888775
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=70.43 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=90.3
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--C------chHHHHHHHHHhh--CCCC---H
Q 000323 1017 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--S------VGKDDMFSYSVKH--NEGS---Y 1083 (1669)
Q Consensus 1017 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~--~------eea~emlekAVel--nP~N---Y 1083 (1669)
|..++++. ..+.+..|..+|.+|++++|+.+.+|-.++..|..+.. + ..+.+..++|+.+ +|.. |
T Consensus 346 g~~~~~~~--~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~ 423 (517)
T PRK10153 346 AHHYLNSG--DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIY 423 (517)
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHH
Confidence 45555443 35678999999999999999999999998776643311 1 1244555666554 4333 3
Q ss_pred H-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1084 A-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1084 ~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
. ++.+++..+ .+++|...|+++.+.+ ++ -+.+..+.++|...|+++.|+.-+.+-+.
T Consensus 424 ~ala~~~~~~g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 424 EILAVQALVKG--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 777777777 8899999999998887 44 46899999999999999999997666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.041 Score=62.44 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW---y~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.+.+.+...|...+.. |+|+.|+..|..+++.+|.++.+- +.++..|++.++-.++...|++.++..|++-.
T Consensus 30 ~~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3556677888888775 568999999999999999988776 88899999999999999999999999999876
Q ss_pred HH-HHHHh------cC-------CC--cccch-hhHHHHHHHHHHhhhcCCCCcch---hhhhhH-------HHHHHHHH
Q 000323 1085 LW-LMYIN------SR-------TP--LNHRL-DAYDAALSVLCRCASASDGDEMH---ASACIL-------DLFLQMLQ 1137 (1669)
Q Consensus 1085 Lw-lmYIn------sr-------~s--lddrl-~~YdkAI~aLe~las~~~~Dr~~---~Sa~iL-------DILL~Lvq 1137 (1669)
.- -+|.. .. .. ..+++ ..-.+|+..|.+....+ |+-.. +-..+. +-=+....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12221 11 00 11222 12367999999999999 45211 111222 22245567
Q ss_pred HHHHhcCHHHHHHHHHhhcc
Q 000323 1138 CFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1138 LY~qSGnydKAI~tl~rLEq 1157 (1669)
+|...|.|.-||.++..+..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 78888888888888777774
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0075 Score=68.91 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH--------HHHHHHhc-CCCc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA--------LWLMYINS-RTPL 1096 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~--------LwlmYIns-r~sl 1096 (1669)
.+.|..|-.++.+ +.....++.+|..-+.+|... ...++.++|++|+++. -++.. ++.+|.+. +
T Consensus 55 ~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--- 129 (282)
T PF14938_consen 55 AEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--- 129 (282)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---
Confidence 3344444444433 222233555666666776555 6778889999998752 23333 66777776 5
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc----ccchHHH
Q 000323 1097 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLSD 1172 (1669)
Q Consensus 1097 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE----~~lSLsK 1172 (1669)
.|++|++.|.+++.-+..+ .......++++.+..|+...|+|++||..+.++....++...- +...+..
T Consensus 130 -----d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 130 -----DYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 7889999998877765222 2556778999999999999999999999888876533322111 1234455
Q ss_pred HHHhhccCCc
Q 000323 1173 ILTCLTISDK 1182 (1669)
Q Consensus 1173 i~~YLt~sDR 1182 (1669)
+..||.++|-
T Consensus 203 ~l~~L~~~D~ 212 (282)
T PF14938_consen 203 ILCHLAMGDY 212 (282)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHcCCH
Confidence 5556665553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=61.66 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=77.5
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHH
Q 000323 1038 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1112 (1669)
Q Consensus 1038 LsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~ 1112 (1669)
|.-...+. ++.=+..|.|+..+++.++-.++..+|+..+.++|.+.. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 44455677 777778888888888888877888888888888887766 777777777 78888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1113 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1113 las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..-. ++- -...+.+..+|.+-|+.+.|++.+..-..
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766 343 56778888888888888888875554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0058 Score=74.64 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=66.2
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaea---Wy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
++.|.+.+.|+.++.-+... |+|+.|+..|++||+++|+++++ ||.++..|..++..+++.++|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46677889999999988776 56899999999999999999965 99999999999999999999999999853
Q ss_pred CCH
Q 000323 1081 GSY 1083 (1669)
Q Consensus 1081 ~NY 1083 (1669)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.32 Score=60.81 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=76.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHcC
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNG 1345 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~al~~e 1345 (1669)
-|....|.+-|...|...|+.+|++... .-+..||.--+-..-++.+|++++.. .|+... .+|.-.|.++-.=|
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVG 486 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhcc
Confidence 3333448888889999999999999999 77778876655466888999999998 554443 69999999999999
Q ss_pred ChHHHHHHHHHHHHhhhhc
Q 000323 1346 RHDFAAELMDRWFHSVWKV 1364 (1669)
Q Consensus 1346 n~d~Ai~Lc~~ff~gia~~ 1364 (1669)
|+..++.|-++.|..+...
T Consensus 487 dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred cHHHHHHHHHHHHHhcchh
Confidence 9999999999988877644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.031 Score=59.06 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-----H--HHHHHHhcCCCcccchhhHHH
Q 000323 1035 LSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1035 LdLLsrALEINP--tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-----~--LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+++...+.+++ ..+.+++.++.+|...+..+++.++|++|++..|+.. + ++.+|...+ .|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~ 90 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDK 90 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHH
Confidence 344445555444 4566778889999999999999999999999877532 1 677788777 8999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcC
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 1144 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGn 1144 (1669)
|+.+|.+..... ++. .+.+..+..+|...|+
T Consensus 91 A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 91 ALEYYHQALELN-PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHcCC
Confidence 999999988877 554 5667777778877766
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.041 Score=65.54 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=84.9
Q ss_pred hhhhccc-hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1002 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1002 ~le~~~~-d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
+++.-.. +.++||..+.-+| |+|+.|++.|.-+.+-+--.+++|..++..+...|.-.++...-++| |
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~ 118 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----P 118 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----C
Confidence 4444443 5599999988776 77999999999999988889999999988877777666665554444 5
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1081 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1081 ~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.+-. |..+-.+.. | -.+-+++-+++ .|- +|=-|.|+-..-|--.|+.||.++.|++
T Consensus 119 k~pL~~RLlfhlahkln----d----Ek~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLN----D----EKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred CChHHHHHHHHHHHHhC----c----HHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 222222222 1 12333333222 232 3445667777777788999999999999
Q ss_pred c
Q 000323 1157 I 1157 (1669)
Q Consensus 1157 q 1157 (1669)
+
T Consensus 179 ~ 179 (557)
T KOG3785|consen 179 Q 179 (557)
T ss_pred h
Confidence 7
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.23 Score=60.54 Aligned_cols=288 Identities=13% Similarity=0.022 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH-HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000323 1048 SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1126 (1669)
Q Consensus 1048 SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw-lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1126 (1669)
.+.++-++..+..-.-+..+.-.|-..+|...|.-.|+| |.|.--.-... +- .|..+....-+.-..+ +++
T Consensus 160 cp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~-~h-s~a~~t~l~le~~~~l-r~N----- 231 (564)
T KOG1174|consen 160 CPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF-KH-SDASQTFLMLHDNTTL-RCN----- 231 (564)
T ss_pred cchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc-cc-chhhhHHHHHHhhccC-Ccc-----
Confidence 455555555555444556667788889999998888866 44433220000 00 3444555554555666 677
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhh
Q 000323 1127 CILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL 1206 (1669)
Q Consensus 1127 ~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~ 1206 (1669)
.+++..+.++|...|++++|+.+...-. ..+| ..+..|-+ |..|+ .+.
T Consensus 232 --vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~-------------------Ya~LL----~~e 279 (564)
T KOG1174|consen 232 --EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDL-------------------YAVLL----GQE 279 (564)
T ss_pred --HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHH-------------------HHHHH----Hhc
Confidence 9999999999999999999998443222 2333 11111111 22211 111
Q ss_pred hhhhhhhccCCCCcccchhhHHHHHH----HHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHH
Q 000323 1207 ECEKELFAIDWPPVQLEDDEKQRAIK----LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNL 1282 (1669)
Q Consensus 1207 e~~KEAf~I~W~y~~vlk~EPdnalA----L~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~L 1282 (1669)
+. | +..-+ ||+- +-| +....=+. ...+..-.+...|+.+
T Consensus 280 g~----------~--------e~~~~L~~~Lf~~--~~~----------------ta~~wfV~-~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 280 GG----------C--------EQDSALMDYLFAK--VKY----------------TASHWFVH-AQLLYDEKKFERALNF 322 (564)
T ss_pred cC----------H--------hhHHHHHHHHHhh--hhc----------------chhhhhhh-hhhhhhhhhHHHHHHH
Confidence 10 0 11111 2221 101 11111111 1121223388889999
Q ss_pred HHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 000323 1283 LEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV 1361 (1669)
Q Consensus 1283 fdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gi 1361 (1669)
-.+.+...|..++- .|++..|..-+-++.|+-.|..|..+.|-.-. ++.=|+...+..+++.+|.-+++.-|..+
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 99999999999998 88888764444499999999999999998888 77778999999999999999987766655
Q ss_pred hhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000323 1362 WKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1441 (1669)
Q Consensus 1362 a~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1441 (1669)
..+.+ +|..+ |--.|..--..-++|...|||+|+.+|+= +
T Consensus 399 ~~sA~----~LtL~----------------------------------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~ 438 (564)
T KOG1174|consen 399 QNSAR----SLTLF----------------------------------GTLVLFPDPRMREKAKKFAEKSLKINPIY--T 438 (564)
T ss_pred hcchh----hhhhh----------------------------------cceeeccCchhHHHHHHHHHhhhccCCcc--H
Confidence 44322 22222 21111111334589999999999999987 9
Q ss_pred HHHHHHHHHHhcCCC
Q 000323 1442 HCVREHAMLLLINES 1456 (1669)
Q Consensus 1442 ~cLNNYAYFLS~e~~ 1456 (1669)
...+--|-.++.+|+
T Consensus 439 ~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999999999886
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.04 Score=64.18 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1181 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1181 (1669)
.|..+|.-.. .....+... ++...++...|...|.++.+|. .|. ++.++.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~---ei~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLS---EIK----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHH---HS-----TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHH---Hhc----cCCChhHHHHHHHHHHHhCcc
Confidence 6788886554 333332234 7788888899999999998776 222 222332334555667776633
Q ss_pred cc-hh------hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1182 KL-IF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1182 R~-~A------WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+. .+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|.-... +..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~~al~------Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLELLALA------VQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHHHHHH------HHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccHHHHH------HHHHHH-cCCHHHH
Confidence 22 11 333332 234566677777777888888887 5554222222111 222211 3444444
Q ss_pred hhh---h-----hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHH
Q 000323 1252 KET---N-----LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1321 (1669)
Q Consensus 1252 ~~~---~-----~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~ 1321 (1669)
... - ..+...+...++..+..-+....|.-.|+.+.+.+|..+.+ .+..++|..++ .++|...+++|+.
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 443 1 11112222222222222335777888888888887777776 56666666665 7778888888888
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHH
Q 000323 1322 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1356 (1669)
Q Consensus 1322 ~~PkNa~g~~caW~QLIq~al~~en~-d~Ai~Lc~~ 1356 (1669)
.+|+++. ...-+|-.....|+. +.+.+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8888777 444445555555555 444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.12 Score=64.29 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
..+|+|+.|..+|..|+.++|++-.+|..-+..|...++-++++.--.+.++++|+=-. ++.-.+..+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg-------- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG-------- 84 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------
Confidence 45799999999999999999999999999999999999989988889999999984211 455555555
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1139 (1669)
.|++|+..|.+..+.. +++ --+.--|++.+
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n-------~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSN-------KQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-Cch-------HHHHHhHHHhh
Confidence 8999999999888887 665 33444455555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.057 Score=68.85 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
++.|-..+.||+..|..+||-..+.+... .. .|. .|+| ++||+..+..+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-----k~---------------~d~--~lyc---------~LGDv~~d~s~ 472 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-----KD---------------PDP--RLYC---------LLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-----CC---------------Ccc--hhHH---------HhhhhccChHH
Confidence 45666778899999988888665554442 11 111 3443 36777777777
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH---------HHHHHhcCHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI---------WCMAVLNGLECS 1279 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I---------R~lI~LEDse~A 1279 (1669)
..+|+.+ .+.-++.|..+.|--.|+. .. +++..+.....+.+|.+ -+.+.+++.+.+
T Consensus 473 yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 473 YEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776 2233444554433222321 11 11112233344444432 222347799999
Q ss_pred HHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1280 MNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1280 ~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
...|...+.+.|...+- -|.++||.+++ ..+|+..+.+|+.-+=++-. +|.-|.-.+..-+.+++|++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999 89999999887 88999999999999988888 999999999999999999998866
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.014 Score=52.19 Aligned_cols=64 Identities=13% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000323 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1047 tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
.++.+|+.++.+|...++-.++..+|++|++++|++.. ++..|...+ ..|++|+..+.+..+.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999998877 566777775 15889999988776654
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.039 Score=57.96 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchh
Q 000323 1031 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~ 1101 (1669)
|..+.+.|...+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 455556666666666666 778899999999999999999999999999776432 778888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH-------HhcCHHHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRI 1152 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~-------qSGnydKAI~tl 1152 (1669)
.+++|+..|++..+.. ++. .+.+..+..+|. ..|+++.|+..+
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8999999999988876 565 455666666666 778877665533
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=62.17 Aligned_cols=92 Identities=10% Similarity=-0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.--.+|.....+ |+++.|..+|+-...+||.++.-||-|+..+-.+++-.++.+.|.+|+.++|+++. ++
T Consensus 36 ~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5555666666665 56799999999999999999999999999999999999999999999999999988 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las 1115 (1669)
..|+..+ ..+.|+..|.....
T Consensus 111 ~c~L~lG--------~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACD--------NVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHH
Confidence 8999988 66888888865544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=54.64 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHhhCCCC----HH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000323 1063 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1136 (1669)
Q Consensus 1063 ~~~eea~emlekAVelnP~N----Y~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv 1136 (1669)
+.-+.+..+|+++++..|.+ ++ ++..|.+.+ .|++|+.+|.+ .... +.. .++.+.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 34456889999999999964 34 588999999 99999999977 3333 333 67777889
Q ss_pred HHHHHhcCHHHHHHHHHh
Q 000323 1137 QCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1137 qLY~qSGnydKAI~tl~r 1154 (1669)
+++...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999997754
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0073 Score=53.65 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH--HhhcccCCccHHHHHHHHHhCCCCC
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR--LQKHDFGDLSSVGFEEALIKWPKGV 1327 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy--L~~K~m~~~A~svle~AL~~~PkNa 1327 (1669)
.+.++..++.++|+.+|+++++..|.+.+.++..+. +..+ -.++|+..|++++...|+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCC
Confidence 345566779999999999999999999999333333 3333 38899999999999999874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.61 Score=60.48 Aligned_cols=361 Identities=11% Similarity=0.098 Sum_probs=209.3
Q ss_pred hcccc-cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC------------CCchHHHHHHHHHhhCCCCHH--H
Q 000323 1021 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT------------NSVGKDDMFSYSVKHNEGSYA--L 1085 (1669)
Q Consensus 1021 Lnq~~-n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~------------~~eea~emlekAVelnP~NY~--L 1085 (1669)
|++.. -..|++|+||.-.+-. .+..+|-.++.+-.+.. +..-....+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 34443 3578899998655443 56788988887654221 1122346677885544 4444 8
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
+-+-|..+ +.++|+.+|-+. +++ |+ |=+||..+|.++.|.+ |-. +-+...-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-kR~------------DL---lNKlyQs~g~w~eA~e----iAE-~~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-KRY------------DL---LNKLYQSQGMWSEAFE----IAE-TKDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-HHH------------HH---HHHHHHhcccHHHHHH----HHh-hccceeh
Confidence 88888888 889999988332 222 33 4578889999999988 332 1111100
Q ss_pred ccchHHHHHHhhccCCcchhhHHHH-----H-HHHhhcc---chH--HHhhhhhhhhhhccCCC-CcccchhhHHHHHHH
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDA--VLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDR~~AWL~~i-----Y-llrYrvL---PGd--~y~q~e~~KEAf~I~W~-y~~vlk~EPdnalAL 1233 (1669)
--+--...-||...-+|.+-|.|- | .-.+|-| |+. .|-+..+++.+|.. |- |-. ...|-|-|+..
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 001223445566555555544432 2 2222222 222 25555555555655 43 322 33567888888
Q ss_pred HHHHHHHHhh-----hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH------HHhCCCc------
Q 000323 1234 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY------IKLYPSC------ 1293 (1669)
Q Consensus 1234 ~smA~dYY~~-----~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl------Lk~~P~d------ 1293 (1669)
.+.|-|||.. +.|+-+.+... +.+.+.|.-+ -|.|...|+..+|+..|.++ +.+|-++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl--aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL--ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998888875 22333333333 3333444433 24444455777776655443 3333221
Q ss_pred ---------hhHHHHHHHHhhccc-CCccHHHHHHH------HHhC--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000323 1294 ---------LELVLMKARLQKHDF-GDLSSVGFEEA------LIKW--PKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1355 (1669)
Q Consensus 1294 ---------~eL~L~AAyL~~K~m-~~~A~svle~A------L~~~--PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1355 (1669)
-++..+|.|.+.+++ -..|+..|.+| |++. -.-.. =.|||---+..+.=.+.++=|.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~-----aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS-----ALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH-----HHHHHHHhcCCCCCHHHHHHHH
Confidence 234566778877763 55666655443 3222 11122 2466777777777777888888
Q ss_pred HHHHhhhhccc---------ccccchhhhcccCCCCCCCCC----CCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1356 RWFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1356 ~ff~gia~~Q~---------~~deALDaLrkgns~i~~es~----s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
.||.....+++ ...+||.++...|-+++.+.. +.-.+||-...+. .+.-+++++..+ +|.+.
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~---~vLeqvae~c~q--QG~Yh 1162 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERK---QVLEQVAELCLQ--QGAYH 1162 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHH---HHHHHHHHHHHh--ccchH
Confidence 89999999987 788888888877777765542 2112333322223 356889999999 99998
Q ss_pred HHHHHHHHH
Q 000323 1423 EARLAIDAA 1431 (1669)
Q Consensus 1423 EAfaAYDKA 1431 (1669)
-|-.-|-.|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 887766554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.01 E-value=7.1 Score=49.65 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=208.0
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.||..|.|...|-.|..-+=.+. ++++...|..-+...|.++.+|..|+.-.+..+.-+.+...|.+-+.-. -
T Consensus 12 rie~nP~di~sw~~lire~qt~~------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L 84 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQP------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L 84 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCC------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence 67889999999999888777773 4999999999999999999999999999888887777777777776544 4
Q ss_pred CHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHH------HHHHhcCHHHHHHHHHh
Q 000323 1082 SYALWLMYINSRTPLNHRLDAY-DAALSVLCRCASASDGDEMHASACILDLFLQMLQ------CFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1082 NY~LwlmYInsr~slddrl~~Y-dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lvq------LY~qSGnydKAI~tl~r 1154 (1669)
|..||-+||.=-....+++.-| +...++|.=......-|. .|..|-+-+...+. =|..+.++++....+.|
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di--~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI--KSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6779988886322222222121 233334422222221233 45544444443332 23344466655555555
Q ss_pred hcccccCCCCcccchHHHHH-Hhhcc--------CCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhcc----------
Q 000323 1155 LLIPATGSNDRHSLFLSDIL-TCLTI--------SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAI---------- 1215 (1669)
Q Consensus 1155 LEq~Al~g~sE~~lSLsKi~-~YLt~--------sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I---------- 1215 (1669)
-.. .| -..|+++. .|.+- ..|-++-..-+|--..++.-.=-.+..|-...++.+
T Consensus 163 al~------tP-m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 163 ALV------TP-MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred Hhc------Cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 554 44 44555655 33221 111111223333111111111112223322333333
Q ss_pred ---------CCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH--H----------HHHH-HH
Q 000323 1216 ---------DWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN--H----------IWCM-AV 1272 (1669)
Q Consensus 1216 ---------~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN--~----------IR~l-I~ 1272 (1669)
.|.-..-++ .+-++...-+.-|+ +++..++... + +..+ ..
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay-----------------eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY-----------------EQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHH-----------------HHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 333222222 11111111122111 1222222220 0 1111 11
Q ss_pred hcC-------HHHHHHHHHHHHHhCCCchhH--HHHHHHHh--hcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1273 LNG-------LECSMNLLEKYIKLYPSCLEL--VLMKARLQ--KHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1273 LED-------se~A~~LfdklLk~~P~d~eL--~L~AAyL~--~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
.+| .+++.+++++.+..--..-.+ ..++.|=+ .++...+.. ..+++++.+.-.+.. =.|.||+..
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~ 375 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNF 375 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHH
Confidence 122 556666666666543332222 33333311 111123344 777888877766665 267889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhc
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQN 1419 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD-~L~q~Lqg 1419 (1669)
+.+.++...|..|..+ |-+.-+ +. -++| ..-.. =||- .+
T Consensus 376 irR~eGlkaaR~iF~k--------------aR~~~r-~~------------hhVf-----------Va~A~mEy~c--sk 415 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKK--------------AREDKR-TR------------HHVF-----------VAAALMEYYC--SK 415 (656)
T ss_pred HHHhhhHHHHHHHHHH--------------HhhccC-Cc------------chhh-----------HHHHHHHHHh--cC
Confidence 9999999999988865 111001 00 1223 22222 2334 68
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000323 1420 DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1471 (1669)
Q Consensus 1420 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1471 (1669)
+.+=||..|+--|+.=++. -...+.|+-||+- |.+++.....|+.+
T Consensus 416 D~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 8889999999999988877 6677888888886 55666666655433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.06 Score=62.05 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+|..|...|.++.+.+|++.++|.-++-.|.+.+..++++..|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 77899999999999999999999999999999999999999999999999988766 443343334 469
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.|...|.+.+..-+.| .-|..-|+-+....|+++.|-.++
T Consensus 186 ~A~~lll~a~l~~~ad--------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 186 DAETLLLPAYLSPAAD--------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhCCCCc--------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999998888776334 457777888889999999997744
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.044 Score=67.39 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHH-HHHhcCCCcccchhh
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----Lwl-mYInsr~slddrl~~ 1102 (1669)
++++.|+.+|.+|+++||+.+.+||.++.+-.-.|..+++.+.+++|++++|--.. ||. ||-..+ +
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~------~-- 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP------L-- 423 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc------h--
Confidence 34799999999999999999999999999888888889999999999999997766 998 999888 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHH
Q 000323 1103 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQC 1138 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa-~iLDILL~LvqL 1138 (1669)
+.||.+|-+..+.. |+ -|.|-+|.+-||
T Consensus 424 -~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 424 -KNNIKLYYKETESE-------SHRVIIDNILKLKQL 452 (458)
T ss_pred -hhhHHHHhhccccc-------cchhhHHHHHHHHHH
Confidence 88999993332222 22 456766666655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.97 Score=59.87 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkA 1106 (1669)
...||..|=++|.+||+=+.+|..+++||.....-.-+..+|.+|.+++|..+. ++-+|.... ..+.|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHH
Confidence 588999999999999999999999999998777666688999999999998888 556676665 55555
Q ss_pred HHHHHHhhhcCCCCc----------------chh--------hh-----hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1107 LSVLCRCASASDGDE----------------MHA--------SA-----CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1107 I~aLe~las~~~~Dr----------------~~~--------Sa-----~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..+.-+.+... +-. ... || -=...|+.+.+.|..+|+|.-|+.+.++.-.
T Consensus 546 ~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 55532211111 000 001 11 1156788888888888888888886665554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.032 Score=70.96 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=104.5
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhc
Q 000323 1017 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1092 (1669)
Q Consensus 1017 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYIns 1092 (1669)
|..+++...-..++|.+|..-|.+.|++||--...||.+...+.+..+-..+.++|-++|.++|++.. |.-.||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 55665555544578899999999999999999999999999999999888899999999999999998 44556666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
+ +-.+|...+-++.+.+ -+. --+|.--+-+....|+++.||+.+-||+.-..++
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 6 5578888887777766 444 5577777888889999999999999998643333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=60.29 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=125.7
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++..|-..+ +|++|+.+|..+....+++ -++++.|+=++..-|.|..|-+ |-..|.+ +
T Consensus 63 ia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka~k--~ 120 (557)
T KOG3785|consen 63 IAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKAPK--T 120 (557)
T ss_pred HHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhCCC--C
Confidence 444555555 8999999998776654344 4556666666666788888866 3332222 2
Q ss_pred cccchHHHHH--HhhccCCcchhhHHHHH----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHH
Q 000323 1165 RHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1238 (1669)
Q Consensus 1165 E~~lSLsKi~--~YLt~sDR~~AWL~~iY----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~ 1238 (1669)
| .-.++. +-...+|.+. |+..-- -++-+.-++.+--..-..+||.++ |.+++.++|+....-+.||+
T Consensus 121 p---L~~RLlfhlahklndEk~-~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 121 P---LCIRLLFHLAHKLNDEKR-ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred h---HHHHHHHHHHHHhCcHHH-HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHHHHH
Confidence 2 000111 1122233211 221110 001111112221122357899999 99999999998877778877
Q ss_pred HHHhhhcCC---cchhhhhhhchhhHhHHHHHHHHH--H-hc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000323 1239 NSVELYSNG---ESLEKETNLRSAHCFAVNHIWCMA--V-LN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1239 dYY~~~~nd---esla~~~~~kt~~~fKLN~IR~lI--~-LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
=||..+--+ +-+..-...--+.-+++|+..|.. . ++ --++..+|.+-+-+.+|.-.+| +--.|-.-.+.+
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l--~rHNLVvFrngE 271 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL--CRHNLVVFRNGE 271 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH--HHcCeEEEeCCc
Confidence 666642221 111111111122223333322221 1 22 2344455666666565543333 111122222367
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.|..|+-..+..-|. +|.-||-+.++++|..+|+.||+.
T Consensus 272 gALqVLP~L~~~IPE-------ARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPE-------ARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred cHHHhchHHHhhChH-------hhhhheeeecccccHHHHHHHHhh
Confidence 777887777777663 788889999999999999999998
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.19 Score=59.83 Aligned_cols=229 Identities=18% Similarity=0.126 Sum_probs=145.5
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++-.|+..+ .|-+|-..|-...+.+ +- .|.++.|.+.|..-..-..|+.+|..-+. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~-~~--------~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF-PH--------PDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC-Cc--------hhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 455677777 7888888886666666 33 68888888888888888878775533221 11
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000323 1165 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~ 1244 (1669)
| +++.|..=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 1222222222233333444555555 566666666666655544433332
Q ss_pred cCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHH
Q 000323 1245 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1320 (1669)
Q Consensus 1245 ~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL 1320 (1669)
-+..|-|+..|.++|++--.+.+| -|++-|-+.- +-+.+-|++|+
T Consensus 337 ----------------------------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~---D~~L~sf~RAl 385 (478)
T KOG1129|consen 337 ----------------------------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI---DLVLPSFQRAL 385 (478)
T ss_pred ----------------------------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch---hhhHHHHHHHH
Confidence 125666777788888888888877 6777664443 46678889998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000323 1321 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1400 (1669)
Q Consensus 1321 ~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1400 (1669)
+..-+..+ ..-+|+-|-..++.-||+..|.+-.+- +|-..+.+ ++
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL~~d~~h----------~e------- 430 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------ALTSDAQH----------GE------- 430 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------HhccCcch----------HH-------
Confidence 87654333 345899998899988888888765432 11111111 11
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000323 1401 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1437 (1669)
Q Consensus 1401 Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1437 (1669)
++-|++....-+|+..+|...|..|-..+|+
T Consensus 431 ------alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 431 ------ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred ------HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666766666699999999999999988885
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.02 Score=48.41 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1057 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~ 1057 (1669)
+.|+.+|.-+...+ +++.|..+|+++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~G-----~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-----QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35666666666653 3477777777777777777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.14 Score=56.19 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
.+.+...|...+.. |+|..|...|...+...|+ .+.+++.++..|+..+.-..+...|++-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777776 5689999999999999987 5688999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchhhHHHHHHHHHHhhhcCCCCcchhh----------hhhHHHHHHHHHHHHHhcCHH
Q 000323 1085 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHAS----------ACILDLFLQMLQCFCMSGNTE 1146 (1669)
Q Consensus 1085 -----LwlmYInsr~sl---ddrl~~YdkAI~aLe~las~~~~Dr~~~S----------a~iLDILL~LvqLY~qSGnyd 1146 (1669)
+++.|.+..... .-+.....+|+..|..+...+ |+-.+.. -.+-+--+...++|...|.|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334443332112 333445678999999999999 4422221 133333466788888899999
Q ss_pred HHHHHHHhhcc
Q 000323 1147 KAIQRISRLLI 1157 (1669)
Q Consensus 1147 KAI~tl~rLEq 1157 (1669)
.|+.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887775
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.036 Score=49.32 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|.++...+ |+. .++++.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999 566 89999999999999999999999988886
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=56.74 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
.+.+.|.+.-..-+..+.+ |.-...+.++.=+..|.++--+++.|+-.++..+|+-.+-++|.|+.
T Consensus 7 ~~~~~~~~~i~~al~~G~t-----------lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~ 75 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGAT-----------LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM 75 (165)
T ss_pred hhHHHHHHHHHHHHHCCCC-----------HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4456666766777776654 66667788888888899999999999999999999999999998877
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1085 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1085 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
|+..|.-.+ .|++|+.+|.-.+.-...| --+.+.+.+||.+-|+.++|+..+
T Consensus 76 GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~d--------p~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 76 GLAAVCQLKK--------QFQKACDLYAVAFTLLKND--------YRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHcccCC--------CCccchHHHHHHHhCCHHHHHHHH
Confidence 777888888 9999999997666544223 336889999999999999999944
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.14 Score=59.19 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1277 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1277 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
..+..-+-......|.|.++..++.-+.+.+-.+.+..+..+++...|+....+.. ++...++.|++..|+...++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~----~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA----QGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----HHHHHHHhcchHHHHHHHHH
Confidence 34666777888899999999333333344433778889999999999998773322 68889999999998888755
Q ss_pred HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1357 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1357 ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
+.+ ..| . ...++ ..+|.+|-+ -|+.++|..+|-+||+..|
T Consensus 126 -----------------A~~--l~p--~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 126 -----------------AAR--LAP--T------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAP 165 (257)
T ss_pred -----------------Hhc--cCC--C------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhcc
Confidence 111 122 1 24456 778899999 9999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1437 SEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1437 ~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
.+ -..+||.+|-+.+++. +.+|+.
T Consensus 166 ~~--p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 166 NE--PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred CC--chhhhhHHHHHHHcCC-HHHHHH
Confidence 99 8899999999998873 444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.72 Score=53.75 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHH
Q 000323 1225 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKAR 1302 (1669)
Q Consensus 1225 ~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAy 1302 (1669)
-.|+.++++.+--..|+... + ..-+..+-+.++-+... .+...-|....+++-..-|.+.-+ -|+|-+
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 46788888886534455431 0 12224444442222222 447777777888888888999999 899999
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccc
Q 000323 1303 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQV 1369 (1669)
Q Consensus 1303 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~d 1369 (1669)
|+.+++-++|+..|+..|+.+|.|.. ++-.=|-....+|+--.||+-...|..-|.-.+. ...
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 99988888999999999999999988 4444466677777878888888887666655543 222
Q ss_pred cchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc---CHHHHHHHHHHHHhhccCC
Q 000323 1370 EISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN---DWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1370 eALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg---~~~EAfaAYDKALkanp~N 1438 (1669)
.|.=-+..-+ +..|.+- +.|.-+++.+|. +| ++.-|..-|++||+.+|.+
T Consensus 172 kA~fClEE~l---------------l~~P~n~--l~f~rlae~~Yt--~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 172 KAAFCLEELL---------------LIQPFNP--LYFQRLAEVLYT--QGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH---------------HcCCCcH--HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222222110 0111111 457788887776 55 4556778888888888865
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.034 Score=47.06 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHh
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYIN 1091 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYIn 1091 (1669)
+++|+.|+..|...|+..++.++|+++|+.+|+|...|.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999999999999999988753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.27 Score=53.98 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=97.1
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCC-----------chH
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNS-----------VGK 1068 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~-----------eea 1068 (1669)
--.++.-.+.++.+|..+... |+|+.|...|.+-++.+|+++ .++|..+..++....+ ..+
T Consensus 35 ~P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 35 YPNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 333455557778888877766 568999999999999999966 5788887776654322 247
Q ss_pred HHHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000323 1069 DDMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1127 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1127 (1669)
...|+.-|+.-|++.. ++.+|.+.+ .|..|+.-+..+...+ |+ |-.
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~----t~~ 176 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PD----TPA 176 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TT----SHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CC----Cch
Confidence 7899999999998865 678888888 9999999999999999 55 356
Q ss_pred hHHHHHHHHHHHHHhcCHHHH
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKA 1148 (1669)
..|.+..|+..|..-|..+.|
T Consensus 177 ~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhCChHHH
Confidence 789999999999999998844
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.022 Score=46.58 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchH
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGK 1068 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea 1068 (1669)
.|.+|||+||+++.+|+.|+.+|...|..+++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 37899999999999999999999988875544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.73 Score=52.52 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCC---------------CC---chHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNT---------------NS---VGKD 1069 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~---------------~~---eea~ 1069 (1669)
+..+.+|.-++.. ++|+.|...|++.++.+|+++ .++|.++..+...+ +. ..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 4556666666665 457999999999999999865 45666665432221 01 2356
Q ss_pred HHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000323 1070 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1128 (1669)
Q Consensus 1070 emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~i 1128 (1669)
+.|+.-|+.-|++-. ++-+|.+.+ .|..|+.-+..+...+ |+ |-..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~----t~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PD----TQAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CC----CchH
Confidence 889999999998876 566788877 8999999999999998 44 3456
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|.|..|+.-|...|..+.|..++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999887766653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.47 Score=57.99 Aligned_cols=185 Identities=18% Similarity=0.070 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1108 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1108 (1669)
+.|+.|.++=-+.|..|++++++.|.-..++|...+-..+...|++|+.++|+-+..-.+|..-+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k--------------- 247 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK--------------- 247 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH---------------
Confidence 56799999999999999999999999999988888888899999999999999999888887666
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1109 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1109 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
.|+..-.+ . .-...+|+|.+|-..+ ..|+.. +| +.+ .-++
T Consensus 248 ~le~~k~~---g----------------N~~fk~G~y~~A~E~Y----teal~i-dP--------------~n~--~~na 287 (486)
T KOG0550|consen 248 KLEVKKER---G----------------NDAFKNGNYRKAYECY----TEALNI-DP--------------SNK--KTNA 287 (486)
T ss_pred HHHHHHhh---h----------------hhHhhccchhHHHHHH----HHhhcC-Cc--------------ccc--chhH
Confidence 22222111 1 1234689999998743 333442 44 122 1122
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1268 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1268 (1669)
..|. . .+-+....++.+||+.- +..+++.||...-+++-- -+
T Consensus 288 klY~----n-ra~v~~rLgrl~eaisd---c~~Al~iD~syikall~r------------------------------a~ 329 (486)
T KOG0550|consen 288 KLYG----N-RALVNIRLGRLREAISD---CNEALKIDSSYIKALLRR------------------------------AN 329 (486)
T ss_pred HHHH----H-hHhhhcccCCchhhhhh---hhhhhhcCHHHHHHHHHH------------------------------HH
Confidence 2221 1 12334456777888876 677777777777777654 35
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcc
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHD 1307 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~ 1307 (1669)
|++++|+++.|++-|.++|+.-.+ +++ +|.-+-+..|+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 677889999999999999999988 666 66666655553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=64.17 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000323 1043 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1043 EINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las 1115 (1669)
+.+|+.+++|+.++..|+..+..+++.++|++|++++|++. .++..|..++ .+++|+..|.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999963 4999999999 77888888877766
Q ss_pred c
Q 000323 1116 A 1116 (1669)
Q Consensus 1116 ~ 1116 (1669)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 4
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.4 Score=59.92 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1101 (1669)
++.|+|..|...|..||.-+|+++.+|+..+..|...+....+..-++++++++|.....| ..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999999999999999999999999999999999999998776632 2222333
Q ss_pred hHHHHHHHHHHhhhcCCCCc
Q 000323 1102 AYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr 1121 (1669)
.|++|++.|.+..... |+.
T Consensus 441 ~ydkAleay~eale~d-p~~ 459 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN 459 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh
Confidence 7999999998887776 554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.08 Score=41.33 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
|++|+.++.+|+..++-.++.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.19 Score=45.39 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1056 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1056 l~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
..+|.+.+.-+.+.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 46778888889999999999999999988 456777777 8999999999999888 554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.54 Score=57.32 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1264 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1264 LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
+|+..|++-+.+..+|+..|.++|+..|.++.- .=--++|.+.. -+.|+..|++|+..+|.|.. +..||+.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~ 335 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLK 335 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 377777777889999999999999999999987 33334455554 77999999999999999998 998888877
Q ss_pred HHcCChHHHHHHHHHHHHhhhh
Q 000323 1342 LQNGRHDFAAELMDRWFHSVWK 1363 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~ff~gia~ 1363 (1669)
.+-..+... -+++|..++.
T Consensus 336 ~k~~~~~~k---ekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEK---EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHH---HHHHHHHHhh
Confidence 654333332 2334555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.64 Score=54.90 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHc---CChHHHHH
Q 000323 1277 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQN---GRHDFAAE 1352 (1669)
Q Consensus 1277 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~---en~d~Ai~ 1352 (1669)
+.-+.+++++|+.+|.+..|++....+-.+-.+.+.+ .-|+.++...|++.. +|..||.+.... -.++.+..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHH
Confidence 4567899999999999999965544443332244444 899999999999999 999999988874 24556666
Q ss_pred HHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 000323 1353 LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAAL 1432 (1669)
Q Consensus 1353 Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKAL 1432 (1669)
+..+.+..+....... ..++ .-..+ ....++..++..|.+.+--|-.+.|++++...|
T Consensus 124 ~y~~~l~~L~~~~~~~---------~~~~-------~~~~~------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR---------MTSH-------PDLPE------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHHhhccc---------cccc-------cchhh------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 6555443333222211 0011 00111 123355677777888888999999999998888
Q ss_pred hhcc
Q 000323 1433 KAAA 1436 (1669)
Q Consensus 1433 kanp 1436 (1669)
..|=
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 7764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.54 Score=48.77 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcc
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1122 (1669)
Q Consensus 1050 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~ 1122 (1669)
+++|+++..|-..|..+++...|++|++.-..... |+..|.+.+ .|++|+.+|.+....+|.+-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDE- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCcc-
Confidence 45666666666666666666666666665444332 445555555 56666666666666552211
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1123 HASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1123 ~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.+.. +.+++.| .+...|+++.|+..+
T Consensus 73 -~~~~-l~~f~Al--~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 73 -LNAA-LRVFLAL--ALYNLGRPKEALEWL 98 (120)
T ss_pred -ccHH-HHHHHHH--HHHHCCCHHHHHHHH
Confidence 1111 2233332 445556666666644
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.8 Score=54.82 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
.|.=+.|..++.++.|. ..||.++...|+..|.+....+..+.++-.+++-+++.++|..++++.|.|..
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 34456667777778776 78999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
...+|=+.- +-|+..|-+...---.. -+++.-+-=|-.-.+.||-++..+.|-+.+|.
T Consensus 329 cia~~yfY~~~P----------E~AlryYRRiLqmG~~s--------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 329 CIAVGYFYDNNP----------EMALRYYRRILQMGAQS--------PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeeccccCCCh----------HHHHHHHHHHHHhcCCC--------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 334555555 88888887654421011 34555555444455678989988887776554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.2 Score=56.30 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=90.5
Q ss_pred hhhhccchHHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
-++..|.....|-.+|.-+..... ...+.+.+|...+.+++++ +|..+.+|..++......++.+++..+|++|+
T Consensus 368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl 447 (517)
T PRK10153 368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI 447 (517)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555666777777665544322 2235678888888888885 88899999999888888888999999999999
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000323 1077 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1149 (1669)
Q Consensus 1077 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1149 (1669)
+++| +.. ++..|.-.+ .+++|++.|.++..-.|.+. -+++.+=..+.-|++...
T Consensus 448 ~L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~P~~p----------t~~~~~~~~f~~~~~~~~ 505 (517)
T PRK10153 448 DLEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLRPGEN----------TLYWIENLVFQTSVETVV 505 (517)
T ss_pred HcCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCc----------hHHHHHhccccccHHHHH
Confidence 9998 433 445555577 78999999999888774432 244444444445554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.22 Score=58.13 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHh--cCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYIN--SRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYIn--sr~slddrl~~Yd 1104 (1669)
|+++.|+.+|..+ .+.|+.....++|..++....+..+++.+-+.+.++.- |+.-|++ .+ + ..|.
T Consensus 116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g---~---e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG---G---EKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT---T---TCCC
T ss_pred CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC---c---hhHH
Confidence 6789999999875 67888888889999999999999999999999876665 4444444 44 1 2679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+|.-+|+++...++ .. ..++.-++-++.+.|+|+.|...|..-.
T Consensus 185 ~A~y~f~El~~~~~-~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 185 DAFYIFEELSDKFG-ST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998883 43 6778899999999999999999665533
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.1 Score=41.30 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+.+|+.++.+|..++.-.++.+.|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5688899999999998888999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.52 Score=54.49 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
.....|+.|.+-|.+||-+||+.+.-|..-+..|.+++.=+.+.+-|.+|+++.|+.-- |.+-.+.+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-------- 92 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-------- 92 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------
Confidence 34678999999999999999999999999999999998888889999999999975433 555555566
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1142 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1142 (1669)
.|+.||..|-++++.. .. +.=-..+|+..+|...--+-
T Consensus 93 ~~~eaI~~Lqra~sl~-r~--~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLL-RE--QPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred cccHHHHHHHHHHHHH-hc--CCCCCcchHHHHHHHHHhCc
Confidence 7899999997775422 00 00012367777776544333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=6.3 Score=49.49 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=88.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1041 ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1041 ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
....+|.-.++||-.+.-++..++..++...+..-++.-|+|-|+| .+|+... .+.+|++.|.++.+.
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l 369 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL 369 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc
Confidence 3344499999999999999999999999999999999999999965 5677777 789999999999998
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1117 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
. |+. .=+.+.+.+.|...|+.++||..|++..-
T Consensus 370 ~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 370 D-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred C-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8 665 55778889999999999999998888874
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.7 Score=52.22 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=69.1
Q ss_pred HhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHH
Q 000323 1272 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1350 (1669)
Q Consensus 1272 ~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~A 1350 (1669)
..+|..-|-..|...|...|++.-. .-+..||-..+....|+..|+.++..--+. + .-.+|.-.|.++-.=|++..|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~-q-~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT-Q-LKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh-h-hhHHHHHHHHHHHhhcchHHH
Confidence 3446667777899999999988877 666667655543667889999888766665 1 123888889999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000323 1351 AELMDRWFHSVWK 1363 (1669)
Q Consensus 1351 i~Lc~~ff~gia~ 1363 (1669)
+.|-++|+.-++.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 9999998876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=4.4 Score=53.08 Aligned_cols=120 Identities=12% Similarity=-0.104 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC---HH-------HHHHHHhc
Q 000323 1028 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS---YA-------LWLMYINS 1092 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSa-----eaWy~yl~lY~~~~~~eea~emlekAVelnP~N---Y~-------LwlmYIns 1092 (1669)
.|+++.|...+.++++..|... .++..++.++...+...++..+|++|++..... +. ++.+|...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3678999999999999766533 355667777888888888999999999764321 11 45566666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+ .++.|+..+.+...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 6 66777777766443210 010 0111111234567778888999999986665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.6 Score=40.70 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCC--CHH-----HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~--NY~-----LwlmYInsr~slddr 1099 (1669)
.+.+..|+.++..+++.++.....+..+.. +|...+.-..+...|++|+..+|. .+. +..+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG------ 181 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc------
Confidence 355789999999999999998776777666 788888888899999999887763 333 222233333
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1100 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.++.|+..+.+.....+... ...+..+...|...+.+++|+..+.+...
T Consensus 182 --~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 --RYEEALELLEKALKLNPDDD-------AEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred --CHHHHHHHHHHHHhhCcccc-------hHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 78999999988888773312 67888899999999999999997766664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.48 Score=54.22 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=73.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Yd 1104 (1669)
-.|+||+|++.|.-.||.||+..=+...-+.-+|--+....+++-|.+-.+-+|.+-. ||++.+.++ ++ =.
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~d-----P~ 183 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LD-----PK 183 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CC-----HH
Confidence 3477899999999999999986554444433333444566777777777777776544 655444333 22 12
Q ss_pred HHHHHHHHh-----------------------------hhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1105 AALSVLCRC-----------------------------ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1105 kAI~aLe~l-----------------------------as~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
+|..-|-+. +.++..+++...-.+++..+++.+.|.+.|..+.|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333333222 3333234444555778888888888888888888876
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.24 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
-.||.+++. .|++++|..+|++||..+|+|
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 578888888 999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.07 E-value=7.8 Score=51.19 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
+.-+-.|..-+.||+-+-.+...|..+.-..+..+.....=+.+++..|-+-+||+-|+..+.....-. .-..+...++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~-~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSE-ERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCc-chhHHHHHHH
Confidence 333444555566666665555555555556666555666666667777777777777777664333221 2233444444
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHH---HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFC---MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~---qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
++...+ -+ .+-| +|+..+++.+-. .++.|++......+.+. ..|. | ++ +--++.++.-.-|+.|||
T Consensus 175 kal~dy-~~---v~iw-~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~--s~g~--~-~t-~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 175 KALGDY-NS---VPIW-EEVVNYLVGFGNVAKKSEDYKKERSVFERALR--SLGS--H-IT-EGAAIWEMYREFEVTYLC 243 (881)
T ss_pred HHhccc-cc---chHH-HHHHHHHHhccccccccccchhhhHHHHHHHh--hhhh--h-hc-ccHHHHHHHHHHHHHHHH
Confidence 443333 11 1111 344444444433 34566666664444443 1110 0 00 011112222222333444
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCC--------CcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWP--------PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1260 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~--------y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1260 (1669)
..- -+.+-.-+-..+.++-......|. +..+..-.+++++.-... +.++. .+..+
T Consensus 244 n~~---~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~-~~~~~-------------e~~~q 306 (881)
T KOG0128|consen 244 NVE---QRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAK-ILFKF-------------ERLVQ 306 (881)
T ss_pred hHH---HHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHH-HHHHH-------------HHHhh
Confidence 441 011111111111111111111111 122222233444333222 12222 23333
Q ss_pred HhHH--HHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhHHH-HHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHH
Q 000323 1261 CFAV--NHIWCMAV----LNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQC 1332 (1669)
Q Consensus 1261 ~fKL--N~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL~L-~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~c 1332 (1669)
.++. .-+..||. .++.....-.+.+++...+.+.++|+ +++|+.+.- .+..+..++-.++..+|--.-
T Consensus 307 ~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd---- 382 (881)
T KOG0128|consen 307 KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD---- 382 (881)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----
Confidence 3333 33566665 45888999999999999999999966 556653332 366777899999999988888
Q ss_pred HHHHHHHHHHH
Q 000323 1333 IWNQYVEYALQ 1343 (1669)
Q Consensus 1333 aW~QLIq~al~ 1343 (1669)
.|.+++ .|+.
T Consensus 383 L~~ral-lAle 392 (881)
T KOG0128|consen 383 LWKRAL-LALE 392 (881)
T ss_pred HHHHHH-HHHH
Confidence 666666 4443
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.16 Score=38.72 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000323 1623 SERFFKRALSVYPFSIKLWKCYYDLSK 1649 (1669)
Q Consensus 1623 ~~rfy~~AlsvyPfS~~LW~~y~~~~~ 1649 (1669)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.2 Score=39.37 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+++|+.++.+|...+..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999854
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.6 Score=45.41 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC---CHHHH----HHHHhcCCCcc
Q 000323 1028 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYALW----LMYINSRTPLN 1097 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~---NY~Lw----lmYInsr~sld 1097 (1669)
.|+.+.|..+|.++|+..+.. ..+++.++..|...|..+++..+|+++++-.|+ +-.++ +...+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 366699999999999986665 679999999999999999999999999998888 44443 4444445
Q ss_pred cchhhHHHHHHHHHHhhh
Q 000323 1098 HRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1098 drl~~YdkAI~aLe~las 1115 (1669)
.+++|++.+.....
T Consensus 90 ----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 ----RPKEALEWLLEALA 103 (120)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 56777777755443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.3 Score=38.59 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
-.+|.+++. .|++++|...|++||+.+|++
T Consensus 5 ~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 5 YNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 567888888 999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.21 Score=40.93 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHH
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1352 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~ 1352 (1669)
|++||+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.45 Score=52.92 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=59.2
Q ss_pred hhhhhccchHHHHHHHHHHHhcccc-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------- 1064 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~----------- 1064 (1669)
......|+|.+.+...+.-++.... .+..-+..|..-|+.||.|||+...+++-++..|+.++.
T Consensus 16 a~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 16 AAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3567788999888887655544432 244679999999999999999999999999888885542
Q ss_pred CchHHHHHHHHHhhCCCCHH
Q 000323 1065 SVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1065 ~eea~emlekAVelnP~NY~ 1084 (1669)
-+.+.++|++||..+|.|..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHhcCCCcHH
Confidence 12367889999999998753
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.38 Score=37.84 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1406 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1406 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
+-.+|.++.+ .|++++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999 999999999999999999954
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.58 Score=58.30 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCCHHHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP~NY~Lw 1086 (1669)
.|..+|+.++--.-..+ .+..--.+|..||..+|+++.+|..-+...+... +-+.+.++|.++++.+|++..||
T Consensus 103 ~D~~lW~~yi~f~kk~~-----~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKK-----TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 48899988765443332 1455557899999999999999999877666444 46679999999999999999999
Q ss_pred HHHHhcCC
Q 000323 1087 LMYINSRT 1094 (1669)
Q Consensus 1087 lmYInsr~ 1094 (1669)
--|.+.+-
T Consensus 178 ~eyfrmEL 185 (568)
T KOG2396|consen 178 KEYFRMEL 185 (568)
T ss_pred HHHHHHHH
Confidence 99999883
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=44.64 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~Y 1103 (1669)
++.+-|-..+.+...-.|+|.-+--..+.++-..+...++.++|+.-++=+|-|.. |+..-...+ +
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-----~---- 136 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-----N---- 136 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-----c----
Confidence 44566777777777777888888888888888888888888888888888888877 443333333 1
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
-.||+.+-+....|..| .|.|..+.++|..-|.|+||+--+..+.-
T Consensus 137 l~aIk~ln~YL~~F~~D--------~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND--------QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 26777777777888667 78999999999999999999887766663
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.44 E-value=35 Score=45.89 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
+++++.+|+..+...|.-.|++.-+-..=+....+.+...++...++ |++.-+.+.. |=..|-.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHh--------
Confidence 56788999999999999999988776655555567787777875554 5555555544 566788888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
.+++|..+|++....+ |. ++.++.++-.|.+-++|.++-+
T Consensus 92 ~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998 56 7899999999999999987644
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.23 Score=58.88 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHH-HHH-HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLM-KAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~-AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
-....-+.|..+++.||.+++||++ +++ +......+.+++.|..+|..+|+++. +|..|.++++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~----iw~eyfr~El~ 188 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR----IWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch----HHHHHHHHHHH
Confidence 4456677999999999999999877 555 45555577888999999999999999 99999888773
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=2 Score=50.31 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000323 1052 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1124 (1669)
Q Consensus 1052 Wy~yl~lY~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1124 (1669)
.|..+.=++..+.-.++.+-|..=|+.-|++ |||+..|..++ .|++|..+|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 4555444455555566777888888777764 78999999999 9999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1125 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1125 Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|.+.-|.+|.+..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999988775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.93 E-value=19 Score=47.87 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=111.7
Q ss_pred chHHH-HHHHHHHHhcccc-cc-hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Q 000323 1008 LSNEQ-CVEMALLILNQDA-NK-LEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVKH- 1078 (1669)
Q Consensus 1008 ~d~ql-WLelAl~~Lnq~~-n~-~g~ydAALdLLsrALEINPtS-----aeaWy~yl~lY~~~~~~eea~emlekAVel- 1078 (1669)
+-.|+ .|+.|+.++.+.. .+ ..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.++++||||=-+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 44443 5778877776653 11 334445555556666654332 346888888888888888889999887322
Q ss_pred ---------CCCCH-------------HHHHHHHhcCCCcccchhhHHHHHHHHHHh-hhcCCCCcchhhhhh------H
Q 000323 1079 ---------NEGSY-------------ALWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACI------L 1129 (1669)
Q Consensus 1079 ---------nP~NY-------------~LwlmYInsr~slddrl~~YdkAI~aLe~l-as~~~~Dr~~~Sa~i------L 1129 (1669)
+|... .-|--||.+..-.+..+..|..|...|+.. ...+ ..+.+-.|+| .
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccH
Confidence 23222 267789999877777777777777766431 0011 0011111111 1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhc--ccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHH-hhccchHHHhh
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLL--IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQL 1205 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLE--q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llr-YrvLPGd~y~q 1205 (1669)
-.-+.+...|--.|++.+|+.-+-|-. .+|+-=+.|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 233566777777888888877322211 11111111111111122344555555444433333 111 21112345777
Q ss_pred hhhhhhhhccCCCCcc
Q 000323 1206 LECEKELFAIDWPPVQ 1221 (1669)
Q Consensus 1206 ~e~~KEAf~I~W~y~~ 1221 (1669)
.|.--+|+.+...+++
T Consensus 1048 AGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQ 1063 (1416)
T ss_pred hcchHHHHHHHHhhcc
Confidence 7877777777444443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.88 E-value=69 Score=41.00 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCC
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN---PtS----aeaWy~yl~lY~~~~-~~eea~emlekAVelnP~N 1082 (1669)
..=|.++..++.... +.+-|.+-|.+|+-+- |+. -.++..++++|.+.. .-..+..+++|||++.-.+
T Consensus 47 rt~LqLg~lL~~yT~----N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTK----NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 344555544444433 2466666666665543 332 345667778887776 4555889999999998433
Q ss_pred -HH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHH--HHHHHHHHHHhc---CHHHHH
Q 000323 1083 -YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL--FLQMLQCFCMSG---NTEKAI 1149 (1669)
Q Consensus 1083 -Y~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDI--LL~LvqLY~qSG---nydKAI 1149 (1669)
|| |+.+.+-++ +|+.|+++|+--++.. | +.++--+-+ ++.+.++..+.. ++.+++
T Consensus 123 p~wsckllfQLaql~~idk--------D~~sA~elLavga~sA--d--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll 190 (629)
T KOG2300|consen 123 PYWSCKLLFQLAQLHIIDK--------DFPSALELLAVGAESA--D--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLL 190 (629)
T ss_pred chhhHHHHHHHHHHHhhhc--------cchhHHHHHhcccccc--c--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 33 666666677 8999999984444332 1 223322222 234455555554 467777
Q ss_pred HHHHhhcc
Q 000323 1150 QRISRLLI 1157 (1669)
Q Consensus 1150 ~tl~rLEq 1157 (1669)
+++..|++
T Consensus 191 ~~~~qi~~ 198 (629)
T KOG2300|consen 191 QRCGQIWQ 198 (629)
T ss_pred HHHHHHHh
Confidence 77777776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.78 E-value=6.9 Score=46.34 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHH---hhc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---CLT 1178 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~---YLt 1178 (1669)
+|-.+|..-+.-.... .+ .+...+|..-|...|.|.-.|+.| ..|..+ -+..|+. |+.
T Consensus 23 nyq~~ine~~~~~~~~-~~--------~e~d~y~~raylAlg~~~~~~~eI-------~~~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSK-TD--------VELDVYMYRAYLALGQYQIVISEI-------KEGKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhcccc-ch--------hHHHHHHHHHHHHccccccccccc-------ccccCC---hHHHHHHHHHHhh
Confidence 6677777665443332 22 566677777888999999887744 222332 2344443 333
Q ss_pred cCCc---chh----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCc
Q 000323 1179 ISDK---LIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1248 (1669)
Q Consensus 1179 ~sDR---~~A----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~nde 1248 (1669)
...+ .++ |++..+ ....+.+-+-+|+..+-..+|+.. .-.....|---.-+.+...+.-...+.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~~-- 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAEK-- 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222 222 777777 667888889999999999999887 4444333322211111111111111011
Q ss_pred chhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhC
Q 000323 1249 SLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKW 1323 (1669)
Q Consensus 1249 sla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~ 1323 (1669)
.+..-+ ..-+...++-.++...-.-+..+.|-=.|..+=+.+|..+.+ -++...|.+.+ .++|..+++.||...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc
Confidence 111111 233333344444444333335666666777777766666666 66677777776 889999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChH
Q 000323 1324 PKGVPGIQCIWNQYVEYALQNGRHD 1348 (1669)
Q Consensus 1324 PkNa~g~~caW~QLIq~al~~en~d 1348 (1669)
|+.+. .-.-+|-.+...|.-+
T Consensus 238 ~~dpe----tL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AKDPE----TLANLIVLALHLGKDA 258 (299)
T ss_pred CCCHH----HHHHHHHHHHHhCCCh
Confidence 99988 4444455555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.62 E-value=6 Score=38.29 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH-HHHhcCCCcccch
Q 000323 1028 LEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHRL 1100 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALE--INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl-mYInsr~slddrl 1100 (1669)
.+.+..++..+..++. ..+....+|+.++.++...+.-..+.+.+..++...+.+.. ... .|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 144 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------- 144 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-------
Confidence 3556889999999998 89999999999999999998888899999999998877633 222 566666
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1101 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1101 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.++.|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 -~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 -DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8899999998886633 31 001255666666668889999999997777764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.8 Score=53.06 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH-H
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1104 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y-d 1104 (1669)
.+...|++|+..=.++|+++|+++-++|.-+..+...++-+.|...|++|+++.|.|-..-.-++... .++..| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999988544444433 122233 5
Q ss_pred HHHHHHHHhhhcC
Q 000323 1105 AALSVLCRCASAS 1117 (1669)
Q Consensus 1105 kAI~aLe~las~~ 1117 (1669)
+...+|-+|.+..
T Consensus 344 kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 344 KEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhcc
Confidence 5588888887765
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.5 Score=56.01 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.-|+.++|--+|.|||...|+.+.++.++..+--...+-.+++.+|-+|+.++|.|..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3467799999999999999999999999988865555566799999999999999987
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.4 Score=48.48 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.--..|+...++ |+|+.|..+|....-.||.++.-|.-|+..+-.+++-+++.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4445556666655 67899999999999999999999999999999999999999999999999988887 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
.-|+..+ .-+.|+..|+.....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHhC
Confidence 9999999 779999999766653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.4 Score=48.04 Aligned_cols=107 Identities=17% Similarity=0.054 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHHhh-----hhccc---ccccchhh
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFHSV-----WKVQY---SQVEISDP 1374 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~gi-----a~~Q~---~~deALDa 1374 (1669)
+.....++....+|++.= .+-+=++++.-+++.+++++|+..++. -|..+ +.+|. ..++|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Y-a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIY-AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444555555544443 333336677777777777777777764 23332 33332 77788887
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1375 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1375 Lrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
|.....+ .+++ .++-+-||+|-. +|+.+||+.+|++||...+++
T Consensus 149 L~t~~~~-------~w~~-----------~~~elrGDill~--kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKEE-------SWAA-----------IVAELRGDILLA--KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhccccc-------cHHH-----------HHHHHhhhHHHH--cCchHHHHHHHHHHHHccCCh
Confidence 7732222 1111 234688999999 999999999999999986654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.83 Score=34.78 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000323 1030 GMKKALSLLSRALEADPTSEILWITYLLIF 1059 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSaeaWy~yl~lY 1059 (1669)
..+.|..+|.++++..|.++.+|..|+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 467888899999999999999999988773
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.08 E-value=24 Score=41.56 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000323 1228 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1305 (1669)
Q Consensus 1228 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1305 (1669)
..+.+.++.|.+||.. +++.+.. .++ .+| ..+|.+ +|.-.+|+..|.++-..--.+--| |=+-.|+.+
T Consensus 131 ekaI~~YE~Aae~yk~---ees~ssA--NKC--~lK---vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKG---EESVSSA--NKC--LLK---VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHHHHHHHHHHHHcc---hhhhhhH--HHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 6788999999999974 4443332 111 122 334544 888899999999999988888777 555555544
Q ss_pred ccc-------CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1306 HDF-------GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1306 K~m-------~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+| +..+...+++-.+++|.=...-.|.+.-=+..++..+|.+.--+.+..
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 442 234457889999999999888999998888899999998887777766
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.2 Score=45.96 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--------HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--------LwlmYInsr~slddr 1099 (1669)
.|.++.|+..|.++|.+-|..+.+|-.-++.|.-.+.++++++-+.+|++++-+--. -+++|--.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g------ 129 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG------ 129 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC------
Confidence 478999999999999999999999999999999999999999999999999854422 455665555
Q ss_pred hhhHHHHHHHHHHhhhc
Q 000323 1100 LDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~ 1116 (1669)
.-++|+.=|+.++.-
T Consensus 130 --~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 --NDDAARADFEAAAQL 144 (175)
T ss_pred --chHHHHHhHHHHHHh
Confidence 337788877766553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.87 E-value=4.1 Score=46.61 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=79.4
Q ss_pred hhhhhhccchH--HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCchHHH
Q 000323 1000 LNKLKQVELSN--EQCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEI-----LWITYLLIFYSNTNSVGKDD 1070 (1669)
Q Consensus 1000 i~~le~~~~d~--qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSae-----aWy~yl~lY~~~~~~eea~e 1070 (1669)
+.-+|.-+.|. +.-++.|-.+=..+. ++-|.|..|..-|+.||++=|..+. +|..-+..+.+++..+.+.+
T Consensus 76 mae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 76 MAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 44555555553 445666655444332 5669999999999999999998654 44444556667777888999
Q ss_pred HHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1071 MFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1071 mlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
-|.+|++++|.+.. -+-.|-+.. .|+.|++=|-...... |.+
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~e--------k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKME--------KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhC-cch
Confidence 99999999984443 355666655 7888888887777766 443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.87 E-value=72 Score=37.79 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=107.8
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~ 1166 (1669)
+-=++.+ .|++|+..|+.+-+++|-+ .+...+.+.+++-+-..|+|+.|+..++|... +-+.++
T Consensus 42 ~~~L~~g--------n~~~A~~~fe~l~~~~p~s-----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~- 105 (254)
T COG4105 42 LTELQKG--------NYEEAIKYFEALDSRHPFS-----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHP- 105 (254)
T ss_pred HHHHhcC--------CHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCC-
Confidence 4456677 8999999999999998433 46689999999999999999999999999886 443333
Q ss_pred cchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000323 1167 SLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1245 (1669)
Q Consensus 1167 ~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1245 (1669)
.+.++-++= +..|..+ +|+ .-||.-+..=+...-+....|-
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i-----------------~~~-----~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQI-----------------DDV-----TRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccC-----------------Ccc-----ccCHHHHHHHHHHHHHHHHHCC
Confidence 223333332 2222221 111 1122222111111112222222
Q ss_pred CCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHhhcccCCccHHH
Q 000323 1246 NGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-----VLMKARLQKHDFGDLSSVG 1315 (1669)
Q Consensus 1246 ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-----~L~AAyL~~K~m~~~A~sv 1315 (1669)
|.+=..... =......-=+...+.|..-+-...|++=|+.+++.+|+-... +|.-+|+.++ +.+.|-.
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg-l~~~a~~- 225 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG-LTDEAKK- 225 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC-ChHHHHH-
Confidence 211110000 000011111222334344668999999999999999998776 6666675543 3555544
Q ss_pred HHHHHHhCCCCCc
Q 000323 1316 FEEALIKWPKGVP 1328 (1669)
Q Consensus 1316 le~AL~~~PkNa~ 1328 (1669)
...+|..++-+.+
T Consensus 226 ~~~vl~~N~p~s~ 238 (254)
T COG4105 226 TAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhcCCCCc
Confidence 4778888877776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=86.74 E-value=0.56 Score=43.10 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-------PtSaeaWy~yl~lY~~~~~~eea~emlekAVeln 1079 (1669)
.+..+|.-+... |+|+.|+..|.+||++- |.-+.+|+.++.+|..+++..++.++|++|++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445444433 66799999999999762 2346788889999999999999999999998753
|
... |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.69 Score=55.02 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY-LLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y-l~lY~~~~~~eea~emlekAVelnP~NY~L 1085 (1669)
+.|.-.|..+|-=...- +-|...-+++..||..+|+++++|... ..-|.-.++-+....||.+++.+||++-.+
T Consensus 104 f~D~k~w~~y~~Y~~k~-----k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKK-----KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 35777888876433333 346777889999999999999999884 444556677777999999999999999999
Q ss_pred HHHHHhcC
Q 000323 1086 WLMYINSR 1093 (1669)
Q Consensus 1086 wlmYInsr 1093 (1669)
|.-|.+.+
T Consensus 179 w~eyfr~E 186 (435)
T COG5191 179 WIEYFRME 186 (435)
T ss_pred HHHHHHHH
Confidence 98888877
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.69 E-value=37 Score=40.61 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000323 1271 AVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1271 I~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~ 1328 (1669)
+.+++.++|..++..+|..++.+.+. .+.++.+.-|. ++..-.-+.+.....|+.+-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd-~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD-AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCcchH
Confidence 44789999999999999999999998 66677665554 33233666778888887765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.03 E-value=6.4 Score=42.55 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|++.|+.+-.++|-. ......-|.++..|-.+|+|+.|+.+++|+..
T Consensus 25 ~Y~~A~~~le~L~~ryP~g-----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFG-----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999998543 35578889999999999999999999999886
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.7 Score=43.21 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
.|+++.|..++.+++++||.+..+|..++..|...|...++.+.|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3668999999999999999999999999999999999888888887764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.37 E-value=55 Score=37.89 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=95.0
Q ss_pred hCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhhccc
Q 000323 1289 LYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH-SVWKVQY 1366 (1669)
Q Consensus 1289 ~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~-gia~~Q~ 1366 (1669)
.....++.||..+.+..+.+ ..-|...+.++....+........+...++++.|..|+...|+.+++.... .+.....
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 35555566888888766654 667888888888877544332233677889999999999999999988766 3333221
Q ss_pred -ccccchh-hhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHh----hhcCHHHHHHHHHHHHhhccCCcH
Q 000323 1367 -SQVEISD-PLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL----LQNDWNEARLAIDAALKAAASEHF 1440 (1669)
Q Consensus 1367 -~~deALD-aLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~----Lqg~~~EAfaAYDKALkanp~N~~ 1440 (1669)
.....+. .+-.....+.... ...+ ...+.--+|-.+|.-.... -.+..+++...|.+|++..|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 291 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTN----LDKE---SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-- 291 (352)
T ss_pred cccHHHHhhccccccccccccc----hhhh---hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--
Confidence 1110000 0000000000000 0000 0112223346666655553 4589999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 000323 1441 KHCVREHAMLLLI 1453 (1669)
Q Consensus 1441 i~cLNNYAYFLS~ 1453 (1669)
..+|..+|.|...
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7799998888663
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.8 Score=39.80 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---CCCCH-H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000323 1046 PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH---NEGSY-A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1046 PtSaeaWy~yl~lY~~~~~~eea~emlekAVel---nP~NY-~-------LwlmYInsr~slddrl~~YdkAI~aLe~la 1114 (1669)
|+-+.+|..++.+|...+.-.++.++|++|+++ -+++. . ++..|...+ .|++|++.|++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Confidence 455788999999999999999999999999955 22222 2 666677777 8899999887764
Q ss_pred h
Q 000323 1115 S 1115 (1669)
Q Consensus 1115 s 1115 (1669)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 3
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=84.68 E-value=8.4 Score=48.20 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLN 1097 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~sld 1097 (1669)
....+.|-.+|...++..|+++-..++-++++...++.+++.+.|++|+... +.+ ++|.|+-..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc----
Confidence 4567899999999999999999999999999999999999999999998433 222 778888888
Q ss_pred cchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH-------HHHHHHHHhhcc
Q 000323 1098 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLLI 1157 (1669)
Q Consensus 1098 drl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny-------dKAI~tl~rLEq 1157 (1669)
.|++|...+.++...+.-.+ + =.-++..=+|.+.|+. ++|..-+.++-.
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----A--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----H--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89999999999877552222 1 1234445577778877 777775544443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=84.59 E-value=7.9 Score=39.80 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000323 1030 GMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1103 (1669)
.-..+...|.+++.+..... .-|..-..- ....++..|++ .+...|+..+ .|
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~~ 78 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------DY 78 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------H
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------CH
Confidence 34788888888888875421 234442222 12233333322 2556777888 89
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++|+..+.++.... |-. ++++..++.+|...|++..|+..+.++..
T Consensus 79 ~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999998 455 89999999999999999999998888764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.09 E-value=1.6e+02 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhCCCC-HH---------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1048 SEILWITYLLIFY-SNTNSVGKDDMFSYSVKHNEGS-YA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1048 SaeaWy~yl~lY~-~~~~~eea~emlekAVelnP~N-Y~---------LwlmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
.+.+.+.|+.++. ...+..+|..+++||+.++..+ +. |..+|-+.+-+. |+..+.++.+.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~---------a~~~l~~~I~~ 128 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA---------ALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHH
Confidence 4567888888887 5556777999999999888532 22 566666666222 44444444433
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1117 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..... .++|..=.-|..+.++...+++..|++.|..+..
T Consensus 129 ~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 129 SETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 31111 2333333333346666666999999998888886
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.8 Score=52.33 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+...|+.|.++|+.||+++|+.++.|-.-+..+.+.+.--+++.-+.+|++++|...- -|...+ +...++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeecc-HHHHhHHHHHH
Confidence 45677999999999999999999999999988888888888899999999999974332 222221 22333448899
Q ss_pred HHHHHHHhhhcCCCCc
Q 000323 1106 ALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr 1121 (1669)
|+..|+..++.. |++
T Consensus 91 A~~~l~~~~~l~-Pnd 105 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND 105 (476)
T ss_pred HHHHHHHhhhcC-cCc
Confidence 999999988887 554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.73 E-value=1.3e+02 Score=40.83 Aligned_cols=289 Identities=18% Similarity=0.147 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHhhC---CCCHHHHHHHHhc
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYS-------------NTNSVGKDDMFSYSVKHN---EGSYALWLMYINS 1092 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~-------------~~~~eea~emlekAVeln---P~NY~LwlmYIns 1092 (1669)
+++..-+.+..+.|+-++++ |..|...+.+ ..-.......-++|.+.- -.+-.|+++-+..
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~k 316 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDK 316 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHH
Confidence 34556666777777777777 3333221111 111112334444444333 3344577777777
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHH
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD 1172 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsK 1172 (1669)
+-.+.++ .++++..| .+.+ +++ +-|..|+-.++..| +.++.+.-++++.. ..+ ..+
T Consensus 317 r~~~~gd---~ee~~~~y---~~kf-g~k---pcc~~Dl~~yl~~l-----~~~q~~~l~~~l~~-----~~~-~~s--- 372 (932)
T KOG2053|consen 317 RYKLIGD---SEEMLSYY---FKKF-GDK---PCCAIDLNHYLGHL-----NIDQLKSLMSKLVL-----ADD-DSS--- 372 (932)
T ss_pred HhcccCC---hHHHHHHH---HHHh-CCC---cHhHhhHHHhhccC-----CHHHHHHHHHHhhc-----cCC-cch---
Confidence 7644443 48888888 4445 343 44566766555444 34444555555553 221 111
Q ss_pred HHHhhccCCcchhhH------HHHHHHHhhccchHHHhhhh-hhhhhhccCCC-CcccchhhHHHHHHHHHHH----HHH
Q 000323 1173 ILTCLTISDKLIFWV------CCVYLVIYRKLPDAVLQLLE-CEKELFAIDWP-PVQLEDDEKQRAIKLIEMA----VNS 1240 (1669)
Q Consensus 1173 i~~YLt~sDR~~AWL------~~iYllrYrvLPGd~y~q~e-~~KEAf~I~W~-y~~vlk~EPdnalAL~smA----~dY 1240 (1669)
+|.++.|. +-.+.-.|-.||.+=....- +-+-.|.-+-. ...++.+|-.....+..+| +|.
T Consensus 373 -------~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 373 -------GDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 55544432 22234456666665444433 22222322111 3445556655553333333 456
Q ss_pred HhhhcCCcchhhhh---------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCchhHHHHHHHHhhcccCC
Q 000323 1241 VELYSNGESLEKET---------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY-IKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1241 Y~~~~ndesla~~~---------~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl-Lk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
|+. +||+..--+. +....-.+|+-.||.|-.++-...|.++|+.+ +|.-+.|.-=-+...++..-++-.
T Consensus 446 ~rk-tnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~ 524 (932)
T KOG2053|consen 446 WRK-TNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSS 524 (932)
T ss_pred HHh-cCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccch
Confidence 665 6665522221 45556677888888887788888888888776 444444433366677777777777
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+...|...+.+--++.. =.--||..|.+.|.|+++++...-
T Consensus 525 ~~s~~~~~~lkfy~~~~k----E~~eyI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 525 FASNTFNEHLKFYDSSLK----ETPEYIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hHHHHHHHHHHHHhhhhh----hhHHHHHHHHHcCchhhhHHHHHH
Confidence 777888888877666655 445678889999999999887643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=81.63 E-value=4.2 Score=51.20 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HH----------HHHHh
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LW----------LMYIN 1091 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------Lw----------lmYIn 1091 (1669)
.+-..+=.+||+++|+-+.+|.-|+.-. -.+..++.++|++||+....++. .| .+|++
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4444455789999999999999987752 22345788999999988776665 11 26666
Q ss_pred cC-----CCcccchhhHHHHHHHHHHhhhcCCC-CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1092 SR-----TPLNHRLDAYDAALSVLCRCASASDG-DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1092 sr-----~slddrl~~YdkAI~aLe~las~~~~-Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
-+ |+++ ...+||..+-++.+-+|. |. +-|-..|+..+.-.+.|..+-..|.+..
T Consensus 263 rRLAmCarklG----r~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLG----RLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 55 1122 228899999999887744 34 5567788899999999999988666554
|
The molecular function of this protein is uncertain. |
| >KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.39 E-value=0.58 Score=52.83 Aligned_cols=33 Identities=39% Similarity=0.835 Sum_probs=28.7
Q ss_pred ccccCCCCCCC-cceeecccccccCCCCcchhhh
Q 000323 845 YTCNLAIDPLW-PLCMYELRGKCNNDECPWQHVK 877 (1669)
Q Consensus 845 ~t~s~~idp~~-~lC~fel~G~CNd~~C~wQH~~ 877 (1669)
-..|+.+||.. |-|||-|-|+||+..|++-|.-
T Consensus 250 cnlsheldprripacryfllgkcnnpncryvhih 283 (377)
T KOG1492|consen 250 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283 (377)
T ss_pred CCcccccCccccchhhhhhhccCCCCCceEEEEe
Confidence 34589999975 8999999999999999999864
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.36 E-value=1.6e+02 Score=37.05 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000323 1026 NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1099 (1669)
+..|+++.|-.+|.++-|. |++=+ +....+.+-..++.-..+.+-...+.+..|.+-. .-..|+.++
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g------ 201 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG------ 201 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc------
Confidence 4568899999999999998 44433 3334466766788778899999999999999998 448899999
Q ss_pred hhhHHHHHHHHHHhhhcC
Q 000323 1100 LDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~ 1117 (1669)
+|...+.++..+.+..
T Consensus 202 --~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 202 --AWQALLAILPKLRKAG 217 (400)
T ss_pred --cHHHHHHHHHHHHHcc
Confidence 9999999999988864
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.41 E-value=70 Score=40.67 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~la 1114 (1669)
-|.--+.-||++.--||.|.++|-.+++-.+..+||+.-. +|-.|. .|-.|+..+.-++ .|..--.+|.+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~----df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARK----DFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhh----hHHHHHHHHHHHH
Confidence 4666778899999999999999988888888899999874 444444 9999999884443 3443334443433
Q ss_pred hcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch--------hh
Q 000323 1115 SASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI--------FW 1186 (1669)
Q Consensus 1115 s~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~--------AW 1186 (1669)
+.. -. +|+|..-+.- |.+++-+-+ |-. + .-..+.|.-.-. |+ +|
T Consensus 104 ~k~--l~-------ldLW~lYl~Y----------IRr~n~~~t----Gq~-r---~~i~~ayefv~~-~~~~e~~s~~~W 155 (660)
T COG5107 104 KKS--LN-------LDLWMLYLEY----------IRRVNNLIT----GQK-R---FKIYEAYEFVLG-CAIFEPQSENYW 155 (660)
T ss_pred hhh--cc-------HhHHHHHHHH----------HHhhCcccc----cch-h---hhhHHHHHHHHh-cccccccccchH
Confidence 332 12 6666543332 232222221 110 0 111222222111 22 38
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000323 1187 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1187 L~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1242 (1669)
=-+.-.++|..-.+.|-.|..- ...=.+ |.+.+.+.=+|.-+|-.. ++..+
T Consensus 156 ~ey~~fle~~~~~~kwEeQqri-d~iR~~---Y~ral~tP~~nleklW~d-y~~fE 206 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRI-DKIRNG---YMRALQTPMGNLEKLWKD-YENFE 206 (660)
T ss_pred HHHHHHHHhccccccHHHHHHH-HHHHHH---HHHHHcCccccHHHHHHH-HHHHH
Confidence 7777789998888888755531 111123 334444444666666655 44444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.40 E-value=6.3 Score=46.33 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=79.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000323 1013 CVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1089 (1669)
Q Consensus 1013 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1089 (1669)
--..|+.++.. |+|+.|-..|..-+.-.|+ .+.++|-|+..|+.+++.+++-..|..+++-.|++-+.--++
T Consensus 144 ~Y~~A~~~~ks-----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKS-----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34455655544 5689999999999999999 578999999999999999999999999999999988844444
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1090 Insr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++....+. ++-.-++|...|.+..+.+ |+
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~Y-P~ 247 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRY-PG 247 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHC-CC
Confidence 44332111 2226799999999999999 55
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 4e-14
Identities = 115/830 (13%), Positives = 228/830 (27%), Gaps = 298/830 (35%)
Query: 799 NQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLC 858
+ H+H +FE E D +++ + V ++ C D
Sbjct: 1 HHHHHHMDFETGEHQYQYKD------ILSVFEDAFVD--------NFDCKDVQD------ 40
Query: 859 MYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDI 918
+ + +E H+ + T LSK ++
Sbjct: 41 --MPKSILSKEEI--DHI------------------IMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 919 LTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDG 978
+ V ++L+ + Y+ + L + P S++
Sbjct: 79 V---QKFVE-EVLRIN-YK------------F---LMSPIKTEQRQP-------SMMTRM 111
Query: 979 RIECIGS-WNRQSSF---FRSRNGVLNKLKQVELSNEQCVEMALLILNQDAN-KLEGMK- 1032
IE +N F SR KL+Q ALL L N ++G+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNVLIDGVLG 160
Query: 1033 --K----ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1086
K LS ++ +I W+ + + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN-----------LKNCN-----------SPETV 198
Query: 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 1146
L + L +++D + S ++
Sbjct: 199 LEMLQK---LLYQID------PNWTSRSDHSSNIKL---------------------RIH 228
Query: 1147 KAIQRISRLLIPATGSNDRHSLF-LSDI----------LTC---LTISDKLIFWVCCVYL 1192
+ RLL + L L ++ L+C LT K +
Sbjct: 229 SIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 1193 VIYRKLPDAVLQLLECE-KELFA--IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1249
+ L + L E K L +D P D + + ++ + ES
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSII-----AES 336
Query: 1250 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG 1309
+ + H+ C + +E S+N+LE P+ + F
Sbjct: 337 IRDGLA-TWDN---WKHVNCDKLTTIIESSLNVLE------PA----------EYRKMFD 376
Query: 1310 DLSSVGFEE-ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ 1368
L SV F A I P + + IW ++ + +L
Sbjct: 377 RL-SV-FPPSAHI--PTIL--LSLIWFDVIKSDVM----VVVNKLHKY------------ 414
Query: 1369 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1428
S+ + + ++ L ++ + NE L
Sbjct: 415 --------------------------SLVEKQPKESTISIPSIYLELKVKLE-NEYAL-- 445
Query: 1429 DAALKAAASEHFKHCVREHAMLL---LINESEPKEGAPISWQLKLLNSY--------LDR 1477
H ++ I ++ + + L+ Y L
Sbjct: 446 ------------------HRSIVDHYNIPKTFDSDDLIPPY----LDQYFYSHIGHHLKN 483
Query: 1478 ARSLPYLKLLPRQFINNIERPR-LQQLIDNLLSPVSSDFSLVNLVLEV-CYGPSLL---P 1532
+ L F++ R L+Q I + + ++ S++N + ++ Y P + P
Sbjct: 484 IEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 1533 RNFSKLKDLVDFVEGIME-IVPSNY----QLAFSVFKLLNKDHNPNITDA 1577
+ + ++DF+ I E ++ S Y ++A L + +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA------LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 6e-13
Identities = 96/740 (12%), Positives = 215/740 (29%), Gaps = 211/740 (28%)
Query: 754 YHSKGNKFPTT-MNHSTSVLLSPPILRGAF------GHLKSELCIALSNQSGNQHNHGRN 806
+H F T + +L + AF ++ LS +
Sbjct: 2 HHHHHMDFETGEHQYQYKDIL--SVFEDAFVDNFDCKDVQDMPKSILSKE---------- 49
Query: 807 FEIEEVACVNSDKTQACYLI---ANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELR 863
EI+ + + L + + ++V+ +V + + + M ++
Sbjct: 50 -EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIK 99
Query: 864 GKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPT 923
+ Y R++ L++D+ + + Q + + L + L P
Sbjct: 100 TEQRQPSMM--TRMYIEQRDR-LYNDNQVFA-KYNVSRLQPYLKLRQALLE----LRPAK 151
Query: 924 YIV-------GLDILKADSYQYQSVIARR-HGLCWQKCLSVSLAISSIYPKDLPADL-SL 974
++ G + D V + + W L++ S P+ + L L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNS---PETVLEMLQKL 205
Query: 975 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEM---ALLILN--QDANKLE 1029
+ +I+ +W +S + ++ ++ EL + LL+L Q+A
Sbjct: 206 LY--QIDP--NWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 1030 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1089
+ + +IL T F T+ + S+ H+ +
Sbjct: 261 AF-------------NLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTL------ 298
Query: 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1149
TP D S+L + D L ++L +
Sbjct: 299 ----TP--------DEVKSLLLKYLDCRPQD----------LPREVLTTNPR------RL 330
Query: 1150 QRISRLLI--PATGSN------DRHSLFLSDILTCLTISD-KLIFWVCCVYLVIYR---K 1197
I+ + AT N D+ + + L L ++ + +F L ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAH 386
Query: 1198 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1257
+P +L L+ W V D + VN + YS +EK+
Sbjct: 387 IPTILLSLI----------WFDVIKSDVM---------VVVNKLHKYS---LVEKQPKES 424
Query: 1258 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFE 1317
+ + + Y++L + + +
Sbjct: 425 TIS------------IPSI---------YLELKVKLENEYALHRSI-------VDHYNIP 456
Query: 1318 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV-W---KVQYSQVEISD 1373
+ P + + ++ + L+N H L F + K+++ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 1374 P-----LVADM----SHSSPESTSTSDPEFSVSNRNQMDVMFG---------YLNLSLHR 1415
+ + + +DP++ +D + Y +L L
Sbjct: 517 SGSILNTLQQLKFYKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI 570
Query: 1416 LLQNDWNEARLAIDAALKAA 1435
L + +EA + +A +
Sbjct: 571 ALMAE-DEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-11
Identities = 90/605 (14%), Positives = 171/605 (28%), Gaps = 177/605 (29%)
Query: 685 EPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPE-----RRIQEAPFQIQD 739
+ + S E+ Q + + I+ +
Sbjct: 57 SKDAVSGTLRLFWT---------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQ 104
Query: 740 KCLVEKGLLEFHSTYHSKGNKF-------PTTMNHSTSVL--LSPP---ILRGAFGHLKS 787
++ + +E ++ F L L P ++ G G K+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 788 ELCIALSNQSGNQHNHGRNFEIE--EVACVNSDKT-----QA-CYLIA---NSKPDIVKG 836
+ + + Q +F+I + NS +T Q Y I S+ D
Sbjct: 165 WVALDVCLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 837 YVGK--EMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAG 894
+ + + L + C+ L + + F NL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAF-----NL-------S 265
Query: 895 CQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCL 954
C+I L + T + D L A + + S+ L +
Sbjct: 266 CKI--------------L-----LTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 955 SVSLAISSIYPKDLPAD--------LSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQV 1006
S+ L P+DLP + LS+I + + + +W+ ++ N +KL +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVN--CDKLTTI 358
Query: 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS--EILWITYLLIFYS 1061
E + + + M LS+ PT ++W F
Sbjct: 359 ---IESSLN------VLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIW------FDV 399
Query: 1062 NTNSVGK--DDMFSYSV--KHN-EGSYALWLMYINSRTPLN-----HR--LDAYDAALSV 1109
+ V + + YS+ K E + ++ +Y+ + L HR +D Y+ +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 1110 LCRCASASDGDEM-------HASAC------------ILDL-FLQMLQCFCMSGNTEKAI 1149
D+ H LD FL+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--------------- 504
Query: 1150 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQ-LLEC 1208
Q+I + S + + L L I C Y +L +A+L L +
Sbjct: 505 QKIRH-----DSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKI 555
Query: 1209 EKELF 1213
E+ L
Sbjct: 556 EENLI 560
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-07
Identities = 99/610 (16%), Positives = 180/610 (29%), Gaps = 164/610 (26%)
Query: 57 SFSDDDSGSDTEDYRHKTAFENKSNTTRVDG-SGRPPTSSAVKV---KNLQQTARNVSKA 112
+F D+ D +D K+ + +D S L + V K
Sbjct: 28 AFVDNFDCKDVQDMP-KSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 113 IPKKLSPSRTLTTTRNHGGANSWV-------SRPPS------VDQRSRVRNFSIKTKLGS 159
+ + L N+ ++ R PS ++QR R+ N
Sbjct: 83 VEEVLRI--------NYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------- 121
Query: 160 LECGDQVGLRNSKLQDLRQQ--IALRESELKLKAAQQ---------NKD-LVIDSCENYH 207
+QV +K R Q + LR++ L+L+ A+ K + +D C +Y
Sbjct: 122 ---DNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY- 174
Query: 208 LGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRS 267
++ K K + L + P T V E + D N RS
Sbjct: 175 --KVQCKMDFK----I-----FWLNL-KNCNSPET-----VLEMLQKLLYQIDPNWTSRS 217
Query: 268 QKDI-PRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNA------SC-------N 313
+ RI S + P EN L V+ +V N A SC
Sbjct: 218 DHSSNIKLRIHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 314 QSDRDSRRVNTGPVLHNTSQLANMTSSN----FLKNAERIESDPASTAAGCHP---SSFL 366
+ D T + +T LK + D +P S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII- 333
Query: 367 SNATREQNVMENSEYTKAISGDKID---GPSFNNV----HQVNTASLGNFSGNGNVS--- 416
A ++ + + K ++ DK+ S N + ++ L F + ++
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 417 -----GNSNVDIQSLLDMEELLDKELEEAQEHRRICEI-----EERKALKAYRKAQRALI 466
+ ++ + +L L E Q I E + L+ R+++
Sbjct: 392 LSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 467 EANASCTKLYR-QRELCSARFRSFVMDDSNLLWSSGQH------ETLGNEF-----DLS- 513
+ Y + S D G H F D
Sbjct: 451 DH-------YNIPKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 514 -----KHVSGNMHLAPTSTHQMQ-----SGYVGYNQGGYDSSMQCINGDLQNFSHEHENG 563
+H S + + + + +Q Y+ N Y+ + +N + +F + E
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVN-AILDFLPKIE-- 556
Query: 564 QNLGSEPCSE 573
+NL ++
Sbjct: 557 ENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 102/718 (14%), Positives = 188/718 (26%), Gaps = 255/718 (35%)
Query: 420 NVDIQSLLDMEE--LLDKELEE-------AQEHRRICEIEERKALKAYRKAQRALIEAN- 469
N D + + DM + L +E++ R+ K + +K ++ N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 470 ----ASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQ------------HETLGN---EF 510
+ RQ + + + + L++ Q + L E
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 511 DLSKHV-------SGNMHLA-----PTSTHQMQSGYVGY-NQGGYDSSMQCINGDLQNFS 557
+K+V SG +A + + N +S + LQ
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLL 206
Query: 558 H--------EHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEE 609
+ ++ N+ S Q L + +N L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------------- 247
Query: 610 ACQLDLESVQ-PN----FEYQQKDQIAEGRQIS-TDYRHNNKLSAVSS---QDPLLLEAT 660
L L +VQ F K + R TD+ + +S L +
Sbjct: 248 ---LVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 661 LRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDI 720
L + + P
Sbjct: 304 K--SLLLK------------YLDCRPQ--------------------------------- 316
Query: 721 GGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTY----HSKGNKFPTTMNHSTSVLLSPP 776
D P + P ++ ++ + + + +T+ H +K T + S +V L P
Sbjct: 317 ---DLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPA 369
Query: 777 ILRGAFGHLKSELCIALSNQSGNQHNHGRNFE----I-EEVACV--NSDKTQACYLIANS 829
R F L + F I + + ++ N
Sbjct: 370 EYRKMF----DRLSV---------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 830 KPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHD- 888
V K+ T ++ P EL+ K N+ LH
Sbjct: 411 --LHKYSLVEKQPKESTISI------PSIYLELKVKLENE--------------YALHRS 448
Query: 889 --DSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRH 946
D + IP+ + D++ P D Y Y I H
Sbjct: 449 IVDHYN--------IPKTFDS--------DDLIPPY----------LDQYFYSH-IG-HH 480
Query: 947 GLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGS-WNRQSSFFRSRNGVLNKLKQ 1005
+ ++L ++ D + + +I + WN S +LN L+Q
Sbjct: 481 LKNIEHPERMTL-FRMVF-----LDFRFL-EQKIRHDSTAWNASGS-------ILNTLQQ 526
Query: 1006 VEL----------SNEQCVEMALL--ILNQDANKLEGMKKALSLLSRALEADPTSEIL 1051
++ E+ V A+L + + N + K LL AL I
Sbjct: 527 LKFYKPYICDNDPKYERLVN-AILDFLPKIEENLICS--KYTDLLRIALM-AEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-04
Identities = 66/465 (14%), Positives = 141/465 (30%), Gaps = 119/465 (25%)
Query: 56 ISFSDDDSGSDTEDYRHKTAFENKSN-TTRVDGSGRPPT---SSAVKVKNLQQTA----- 106
++ + +S + K ++ N T+R D S S +++ L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 107 ----RNV-SKAIPKKLSPS-RTLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSL 160
NV + + S + L TTR + + + + S+ +L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--------ATTTHISLDHHSMTL 298
Query: 161 ECGDQVGL----RNSKLQDLRQQIALRESELKLKAAQQNKDLVIDSCENYHLGRLDQ-KE 215
+ L + + QDL ++ L + +L ++ +S + L D K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLS-------IIAESIRD-GLATWDNWKH 349
Query: 216 PDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSR 275
+ +L +S++ V EP R V IP
Sbjct: 350 VNCDKLTT-----------------IIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTIL 391
Query: 276 IESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLA 335
+ + W V +V+ VV + S + ++ + +
Sbjct: 392 LS---LIWFD-------VIKSDVMVVVNKLH--KYSLVEKQPKESTIS----IPSIYLEL 435
Query: 336 NMTSSNFLKNAER--IES-------DPASTAA-----------GCHPSSFLSNATREQNV 375
+ N R ++ D G H L N + +
Sbjct: 436 KVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERM 490
Query: 376 ME------NSEYTKAISGDKI--DGPSFNNVHQVNTASLGNFSG-NGNVSGNSNVDIQSL 426
+ + + KI D ++N + +L + N + +
Sbjct: 491 TLFRMVFLDFRFLEQ----KIRHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLV 545
Query: 427 LDMEELLDKELEEA---QEHRRICEI---EERKAL--KAYRKAQR 463
+ + L K +EE ++ + I E +A+ +A+++ QR
Sbjct: 546 NAILDFLPK-IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 35/471 (7%), Positives = 120/471 (25%), Gaps = 60/471 (12%)
Query: 1023 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD---DMFSYSVKHN 1079
+ L+ K+ + + P +W L + + + + + +
Sbjct: 74 KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133
Query: 1080 EG--SYALWLM---YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQ 1134
G +LWL Y+ + + + + + S + +L
Sbjct: 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193
Query: 1135 MLQCFCMSGNTEKAIQRISR--------LLIPATGSNDRHSLFLSDILTCL-TISDKLIF 1185
L+ + E+ QR+ L P + + + I
Sbjct: 194 FLEHWKPVNKFEEQ-QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIG 252
Query: 1186 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE-KQRAIKLIEMAVNSVEL- 1243
+ Y+ D + ++ L + + + ++ + + + +
Sbjct: 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312
Query: 1244 YSNGESLEKETNLRSAHCF---AVNHI------------WCMAVLNGLECSMNLLEKYIK 1288
N L + + A H+ + L+ +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 1289 LYPSCLELVLMKARL--QKHDFGDLSSVGFEEALIKWPKGV------------------P 1328
P+ L + ++ + + + +
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETT-ILSCIDRIHLDLAALMEDDPTNESAINQLKS 431
Query: 1329 GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTS 1388
+ ++ Y+ + + ++ + V + + + + ++
Sbjct: 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-DIYLENAYIEYHISKDTKTAC 490
Query: 1389 TSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1439
+ + YL+ ++ N+ ++ + ++++ + H
Sbjct: 491 KVLELGLKYFATDGEYINKYLDFLIY---VNEESQVKSLFESSIDKISDSH 538
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 49/382 (12%), Positives = 109/382 (28%), Gaps = 39/382 (10%)
Query: 1023 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGK-DDMFSYSVKHNEG 1081
+ + + SL R L+ + LW+ Y+ + K +++ +++ E
Sbjct: 22 RRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN 80
Query: 1082 ---SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA--SDGDEMHASACILDLFLQML 1136
SY L+ YI + + + R E+ +L L +
Sbjct: 81 YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI 140
Query: 1137 QCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW-------VCC 1189
+ G+T Q + S+ + L L + + + +
Sbjct: 141 TGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200
Query: 1190 VY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1246
++ L + + E + + +E + + + V
Sbjct: 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEA 260
Query: 1247 GESLEKETNLRSAHCFA------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCL 1294
K A +NH+ + GLE L +
Sbjct: 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPH 320
Query: 1295 ELVLMKARLQKHDFGDLSSVG--FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1352
+ A ++ + G ++ F L+K P + ++ + L+ G + A
Sbjct: 321 VFI-YCAFIEYYATGSRATPYNIFSSGLLKHPDSTL----LKEEFFLFLLRIGDEENARA 375
Query: 1353 LMDRWFHS--VWKVQYSQVEIS 1372
L R + +W + E
Sbjct: 376 LFKRLEKTSRMWD-SMIEYEFM 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1669 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.76 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.31 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.07 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.76 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 85.54 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-20 Score=153.56 Aligned_cols=363 Identities=13% Similarity=0.044 Sum_probs=246.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHH
Q ss_conf 99999873003554455999999999999829999899999999997288971289999999850998899----99999
Q 000323 1014 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMY 1089 (1669)
Q Consensus 1014 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmY 1089 (1669)
|++|..++. .|+|+.|..+|..+++.+|+++.+|+.++.+|...+..+++.+.|++|++.+|.+.. ++..|
T Consensus 3 l~la~~~~~-----~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 3 MELAHREYQ-----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77 (388)
T ss_dssp CTHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999998-----699999999999999868998999999999999869999999999999985999899999999996
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 83589766412359999999998620399993012120379999999998770689999999996304224899964230
Q 000323 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1169 (1669)
Q Consensus 1090 Insr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lS 1169 (1669)
...+ .|++|+..+....... +.. .+........+...+.+..+......... ...... ...
T Consensus 78 ~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 138 (388)
T d1w3ba_ 78 KERG--------QLQEAIEHYRHALRLK-PDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY-CVR 138 (388)
T ss_dssp HHHT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCT-HHH
T ss_pred HHHC--------CCCCCCCCCCCCCCCC-CCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCC
T ss_conf 4200--------0222222222121122-222-------22222222222222222222222111222--222222-222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-------HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999986412773204688889-------998501606798620112332116899865531237889999999998886
Q 000323 1170 LSDILTCLTISDKLIFWVCCVY-------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1170 LsKi~~YLt~sDKc~AWL~~iY-------llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~ 1242 (1669)
......+........+.....- .......+|..+...+..++|... +.+.++.+|+++.++..+| ..|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~l~-~~~~ 214 (388)
T d1w3ba_ 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH---FEKAVTLDPNFLDAYINLG-NVLK 214 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHCCCCHHHHHHHH-HHHH
T ss_conf 22222221100013567888874025861068998636301024719999999---9999984946499999971-5522
Q ss_pred HHCCCCCHHHHHHHCHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHH
Q ss_conf 302884023433110136------867789999997139799999999999939984148--989999841026875099
Q 000323 1243 LYSNGESLEKETNLRSAH------CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSV 1314 (1669)
Q Consensus 1243 ~~~ndEsla~~~~~kt~~------~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Ais 1314 (1669)
. .++-+.+.....+... ..-.++...+...++.+.|+..|.++++..|.+++. .+...+...++ ..+|+.
T Consensus 215 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~ 292 (388)
T d1w3ba_ 215 E-ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAED 292 (388)
T ss_dssp T-TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 0-05299999999985777554799999999999987899999999999998499989999999999997487-999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999982999983378999999999997399479999999999965000256111201110268999999999998522
Q 000323 1315 GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEF 1394 (1669)
Q Consensus 1315 vle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDf 1394 (1669)
.|+.++...|.+.. .|..+.......+++++|+...++.+ . +.++ ..+.
T Consensus 293 ~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al-----------------~-----~~p~-----~~~~ 341 (388)
T d1w3ba_ 293 CYNTALRLCPTHAD----SLNNLANIKREQGNIEEAVRLYRKAL-----------------E-----VFPE-----FAAA 341 (388)
T ss_dssp HHHHHHHHCTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHT-----------------T-----SCTT-----CHHH
T ss_pred HHHHHHCCCCCCCH----HHHHHHHHHHHCCCHHHHHHHHHHHH-----------------H-----HCCC-----CHHH
T ss_conf 99865404873001----01579999998789999999999999-----------------8-----6889-----8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 2233221135778999999985204989999999999711027708999999898881
Q 000323 1395 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1452 (1669)
Q Consensus 1395 y~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1452 (1669)
+ ..+|.+|+. .|++++|..+|++||+.+|++ ..++.+.+.-+.
T Consensus 342 ~-----------~~la~~~~~--~g~~~~A~~~~~~al~l~P~~--~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 342 H-----------SNLASVLQQ--QGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLK 384 (388)
T ss_dssp H-----------HHHHHHHHT--TTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 9-----------999999998--599999999999999709998--999999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.5e-15 Score=119.87 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999997288971289999999850998899----99999835897664123599999999986203999930121203
Q 000323 1053 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1128 (1669)
Q Consensus 1053 y~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~i 1128 (1669)
++++..+++.|+-.++.+.|+++++.+|.+.. ++..|...+ .|++|+..|.++.+.+ |+.
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~------- 66 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--------RLDRSAHFSTLAIKQN-PLL------- 66 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------
T ss_conf 999999998699999999999999868998999999999999869--------9999999999999859-998-------
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 79999999998770689999999996304
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+++..+..+|...|++++|+..+.....
T Consensus 67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~ 95 (388)
T d1w3ba_ 67 AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999996420002222222221211
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=7.2e-13 Score=101.59 Aligned_cols=264 Identities=13% Similarity=0.078 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 08999999998730035---544559999999999998299998999999999972889712899999998509988999
Q 000323 1009 SNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1009 d~elWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~L 1085 (1669)
..++|++++..--.... ......+.+..+|.+||...|.++++|+.|+.+.-..++ ...+..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~---------~~~~~~------ 71 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK---------LLAEKG------ 71 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHHHTS------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---------HHHHHH------
T ss_conf 99999999999876865433220369999999999998777999999999999987073---------688777------
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99998358976641235999999999862039999301212037999999999877068999999999630422489996
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
.+..... .+++|+.+|+++...++|.. ..+|+..+.++...|+++.|+..+.+++. ..+
T Consensus 72 -~~~~~~~--------~~~~a~~i~~ral~~~~p~~-------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~-----~~~ 130 (308)
T d2onda1 72 -DMNNAKL--------FSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLA-----IED 130 (308)
T ss_dssp -CCHHHHH--------HHHHHHHHHHHHHTTTTTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SSS
T ss_pred -HHHHCCC--------CHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHC
T ss_conf -8763102--------45999999999998749987-------99999999999861338999999999998-----715
Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42308999986412773204688889-99850160679862011233211689986553123788999999999888630
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDKc~AWL~~iY-llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~ 1244 (1669)
.+...+|+.++. ..+.+.. +.+..++..|.....
T Consensus 131 --------------~~~~~~w~~~~~~~~~~~~~-----------------------------~~ar~i~~~al~~~~-- 165 (308)
T d2onda1 131 --------------IDPTLVYIQYMKFARRAEGI-----------------------------KSGRMIFKKAREDAR-- 165 (308)
T ss_dssp --------------SCTHHHHHHHHHHHHHHHCH-----------------------------HHHHHHHHHHHTSTT--
T ss_pred --------------CCHHHHHHHHHHHHHHCCCH-----------------------------HHHHHHHHHHHHHCC--
T ss_conf --------------78699999999999982786-----------------------------889999999998088--
Q ss_pred CCCCCHHHHHHHCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHH
Q ss_conf 28840234331101368677899999-97139799999999999939984148989999841026-87509999999982
Q 000323 1245 SNGESLEKETNLRSAHCFAVNHIWCM-AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK 1322 (1669)
Q Consensus 1245 ~ndEsla~~~~~kt~~~tKLN~Ir~l-I~LEDse~A~~LfdklLk~~P~dveL~L~AAyL~~K~m-~~~Aisvle~AL~~ 1322 (1669)
.....+ +...... ....+.+.++.+|.++++.+|.++++|+..+.+....+ .+.++.+|++++..
T Consensus 166 ------------~~~~~~-~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 166 ------------TRHHVY-VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ------------CCTHHH-HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred ------------CCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------------867999-9999999876557789999999999861003889999999999869868999999999982
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998337899999999999739947999999999996500025
Q 000323 1323 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY 1366 (1669)
Q Consensus 1323 ~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~ 1366 (1669)
.|.+..-..-+|..+++++...|+.+.+..+-++....++....
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 78986899999999999999849999999999999987711022
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.3e-13 Score=104.96 Aligned_cols=248 Identities=14% Similarity=0.061 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----
Q ss_conf 0899999999873003554455999999999999829999899999999997288971289999999850998899----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~---- 1084 (1669)
+.+.+++.|..++..+ +++.|...|.++|+.+|+++.+|+.++.+|...+....+..+|.+|++.+|.+..
T Consensus 18 ~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 92 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEG-----DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92 (323)
T ss_dssp TCSSHHHHHHHHHHTT-----CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 5399999999999859-----99999999999998689989999999999998377588999998510022222222222
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999835897664123599999999986203999930121203799999999987706899999999963042248999
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++..|.+.+ .++.|+..|.+..... ++. ..++.. .
T Consensus 93 la~~~~~~~--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~-----------------------------~ 127 (323)
T d1fcha_ 93 LAVSFTNES--------LQRQACEILRDWLRYT-PAY-------AHLVTP-----------------------------A 127 (323)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHTS-TTT-------GGGCC-------------------------------
T ss_pred CCCCCCCCC--------CCCCCCCCHHHHHHHC-CCH-------HHHHHH-----------------------------H
T ss_conf 222222222--------1121110002677736-106-------788876-----------------------------6
Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64230899998641277320468888999850160679862011233211689986553123788999999999888630
Q 000323 1165 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~ 1244 (1669)
. .......+ ..+.
T Consensus 128 ~---------------------------------------------------------------~~~~~~~~--~~~~-- 140 (323)
T d1fcha_ 128 E---------------------------------------------------------------EGAGGAGL--GPSK-- 140 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H---------------------------------------------------------------HHHHHCCC--CCCH--
T ss_conf 4---------------------------------------------------------------00000001--0000--
Q ss_pred CCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HH--HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 2884023433110136867789999997139799999999999939984148--98--9999841026875099999999
Q 000323 1245 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VL--MKARLQKHDFGDLSSVGFEEAL 1320 (1669)
Q Consensus 1245 ~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L--~AAyL~~K~m~~~Aisvle~AL 1320 (1669)
+. +..+........+...|.++++..|...+. +. ...++..++ .++|+..|+.++
T Consensus 141 ------------~~--------~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 199 (323)
T d1fcha_ 141 ------------RI--------LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAAL 199 (323)
T ss_dssp ------------CT--------THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred ------------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCC
T ss_conf ------------14--------788887657999999999999971301222111036888888887-755002111222
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82999983378999999999997399479999999999965000256111201110268999999999998522223322
Q 000323 1321 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1400 (1669)
Q Consensus 1321 ~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1400 (1669)
...|++.. +|..+.......++++.|+..+.+.+.- . |. ..+.+
T Consensus 200 ~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~----p~--------~~~a~----- 243 (323)
T d1fcha_ 200 SVRPNDYL----LWNKLGATLANGNQSEEAVAAYRRALEL---------------Q----PG--------YIRSR----- 243 (323)
T ss_dssp HHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------C----TT--------CHHHH-----
T ss_pred CCCCCCCC----CHHHHHHCCCCCCCCHHHHHHHHHHHHH---------------H----HC--------CHHHH-----
T ss_conf 22222211----1013330122111101378887789988---------------4----32--------49999-----
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11357789999999852049899999999997110277
Q 000323 1401 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1401 q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
..||.+++. .|++++|...|++||..+|.+
T Consensus 244 ------~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 244 ------YNLGISCIN--LGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp ------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC
T ss_conf ------999999998--789999999999999709757
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8e-12 Score=94.51 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=54.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 22100008999999998730035544559999999999998299998999999999972889712899999998509988
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1003 le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~N 1082 (1669)
|+..|.+.+.|..+|..+...+ +++.|+..|.+|++++|+++.+|+.++.+|...+...++.+++++++...|..
T Consensus 46 l~~~P~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 120 (323)
T d1fcha_ 46 VQQDPKHMEAWQYLGTTQAENE-----QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 120 (323)
T ss_dssp HHSCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf 9868998999999999999837-----75889999985100222222222222222222221121110002677736106
Q ss_pred HH
Q ss_conf 99
Q 000323 1083 YA 1084 (1669)
Q Consensus 1083 Y~ 1084 (1669)
..
T Consensus 121 ~~ 122 (323)
T d1fcha_ 121 AH 122 (323)
T ss_dssp GG
T ss_pred HH
T ss_conf 78
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=5e-10 Score=82.32 Aligned_cols=256 Identities=12% Similarity=0.049 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999999997288971--------28999999985099889999999835897664123599999999986203999
Q 000323 1048 SEILWITYLLIFYSNTNSV--------GKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1119 (1669)
Q Consensus 1048 SaelWy~Ll~lY~~~~~~e--------ea~emlEkAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~ 1119 (1669)
...+|..|+.+....+... .+...|++|+...|.+..||.+|+.-. ..-...+ .. . .
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~----------~~~~~~~---~~-~-~ 71 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL----------EQSSKLL---AE-K-G 71 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------HHHHHHH---HH-T-S
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH----------HHCCCHH---HH-H-H
T ss_conf 999999999998768654332203699999999999987779999999999999----------8707368---87-7-7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 93012120379999999998770689999999996304224899964230899998641277320468888999850160
Q 000323 1120 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLP 1199 (1669)
Q Consensus 1120 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLP 1199 (1669)
+. ....+.+++|...+.|-.. ...|. ....|+.+.....-+
T Consensus 72 ~~-----------------~~~~~~~~~a~~i~~ral~----~~~p~---------------~~~l~~~ya~~~~~~--- 112 (308)
T d2onda1 72 DM-----------------NNAKLFSDEAANIYERAIS----TLLKK---------------NMLLYFAYADYEESR--- 112 (308)
T ss_dssp CC-----------------HHHHHHHHHHHHHHHHHHT----TTTTT---------------CHHHHHHHHHHHHHT---
T ss_pred HH-----------------HHCCCCHHHHHHHHHHHHH----HCCCC---------------CHHHHHHHHHHHHHC---
T ss_conf 87-----------------6310245999999999998----74998---------------799999999999861---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 67986201123321168998655312378899999999988863028840234331101368677899999971397999
Q 000323 1200 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECS 1279 (1669)
Q Consensus 1200 Gdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A 1279 (1669)
+ +.+.+..++.-+. .. . ++.....-+.++......++.+.+
T Consensus 113 -------~------------------~~~~a~~i~~~~l---~~--~---------~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 113 -------M------------------KYEKVHSIYNRLL---AI--E---------DIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp -------T------------------CHHHHHHHHHHHH---TS--S---------SSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred -------C------------------CHHHHHHHHHHHH---HH--H---------CCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf -------3------------------3899999999999---87--1---------578699999999999982786889
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999993998414898999984102--68750999999998299998337899999999999739947999999999
Q 000323 1280 MNLLEKYIKLYPSCLELVLMKARLQKHD--FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1357 (1669)
Q Consensus 1280 ~~LfdklLk~~P~dveL~L~AAyL~~K~--m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~f 1357 (1669)
+.+|.++++.+|.+..+++..+.+.... ..+.|+.+|+.++...|++.. .|+.|+.+.+..++.+.|..+.++.
T Consensus 154 r~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~----~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE----YVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999998088867999999999987655778999999999986100388----9999999999869868999999999
Q ss_pred HHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 996500025611120111026899999999999852222332211357789999--999852049899999999997110
Q 000323 1358 FHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1358 f~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD--~Lyq~Lqg~~~EAfaAYDKALkan 1435 (1669)
+..++ .++ +-. ..+|+ +.+.-.+|+...+...++++.+..
T Consensus 230 i~~~~-------------------~~~--------~~~-----------~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 230 LTSGS-------------------LPP--------EKS-----------GEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHSSS-------------------SCG--------GGC-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHCC-------------------CCH--------HHH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 98278-------------------986--------899-----------9999999999998499999999999999877
Q ss_pred CCC
Q ss_conf 277
Q 000323 1436 ASE 1438 (1669)
Q Consensus 1436 p~N 1438 (1669)
|..
T Consensus 272 ~~~ 274 (308)
T d2onda1 272 REE 274 (308)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 110
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.8e-11 Score=88.19 Aligned_cols=134 Identities=9% Similarity=0.095 Sum_probs=111.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCC
Q ss_conf 221000089999999987300355445599999999999982999989999999999728897-1289999999850998
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1003 le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~-eea~emlEkAVelnP~ 1081 (1669)
|.-.|.-.+++--++..+..++. ++.|+.++.+||++||....+|+..+.++...+.+ +++.+.+++|++.+|.
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~-----~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDER-----SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 22697799999999999995886-----6999999999998798876999999999998376799999999999988774
Q ss_pred CHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 899----9999983589766412359999999998620399993012120379999999998770689999999996304
Q 000323 1082 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1082 NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+++ +++.|...+ .|++|+..|.++.... |.. .++|..+..++...|+++.|+..+++...
T Consensus 111 ~~~a~~~~~~~~~~l~--------~~~eAl~~~~kal~~d-p~n-------~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLR--------DPSQELEFIADILNQD-AKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp CHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH-HCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2268988758888505--------3788998875554321-004-------68899887788888866789999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=4.3e-11 Score=89.54 Aligned_cols=258 Identities=13% Similarity=0.047 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 999999999998299998999999999972889----------7128999999985099889999999835897664123
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTN----------SVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~----------~eea~emlEkAVelnP~NY~LwlmYInsr~slddrl~ 1101 (1669)
+.|+.++.++|++||...++|.....++..... -.++..+|++|++.+|.++.+|......-..++ + .
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~-~-~ 123 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP-E-P 123 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS-S-C
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-C-C
T ss_conf 9999999999998878589999999999997650034778778999999999999868886798988648998843-0-4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 599999999986203999930121203799999-9999877068999999999630422489996423089999864127
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQ-MLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS 1180 (1669)
Q Consensus 1102 ~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~-LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~s 1180 (1669)
++++|+..+.++...+ +.. .+.+.. +..++...+.+++|+..+.+... .+|.
T Consensus 124 ~~~~a~~~~~~al~~~-~~~-------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-----~~p~-------------- 176 (334)
T d1dcea1 124 NWARELELCARFLEAD-ERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFS-------------- 176 (334)
T ss_dssp CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCC--------------
T ss_pred CHHHHHHHHHHHHHHC-CHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----CCCC--------------
T ss_conf 2899999999998559-212-------111105789998744552899999999887-----1898--------------
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHH-
Q ss_conf 7320468888999850160679862011233211689986553123788999999999888630288402343311013-
Q 000323 1181 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA- 1259 (1669)
Q Consensus 1181 DKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~- 1259 (1669)
+- .+| . .+|.+|...+...+|... +...++..|...-.... +....-.+++...- .+..
T Consensus 177 ~~-~a~---------~-~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~--~~~l~ 236 (334)
T d1dcea1 177 NY-SSW---------H-YRSCLLPQLHPQPDSGPQ---GRLPENVLLKELELVQN----AFFTDPNDQSAWFY--HRWLL 236 (334)
T ss_dssp CH-HHH---------H-HHHHHHHHHSCCCCSSSC---CSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHH--HHHHH
T ss_pred CH-HHH---------H-HHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHH--HHHHH
T ss_conf 79-999---------9-999999982688989998---87767768999999999----98824414889999--98877
Q ss_pred -----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -----686778999999713979999999999993998414898-99998410268750999999998299998337899
Q 000323 1260 -----HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCI 1333 (1669)
Q Consensus 1260 -----~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL~L-~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~ca 1333 (1669)
...-.+....+...++..++...|.++++..|.+...+. .+..+...+..++|+..|++|+.++|++.. .
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~----y 312 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA----Y 312 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH----H
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----H
T ss_conf 186605678879999999866999999999887629137999999999998789999999999999987966399----9
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 000323 1334 WNQYVEYAL 1342 (1669)
Q Consensus 1334 W~QLIq~al 1342 (1669)
|..|.....
T Consensus 313 ~~~L~~~~~ 321 (334)
T d1dcea1 313 LDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999986
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=5.1e-10 Score=82.25 Aligned_cols=108 Identities=9% Similarity=0.031 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHH-----HHHHHHHCCCCCCCC
Q ss_conf 445599999999999982999989999999999728897--1289999999850998899-----999998358976641
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~--eea~emlEkAVelnP~NY~-----LwlmYInsr~slddr 1099 (1669)
..+.++.|+..+..+|+++|.+..+|+.++..+...+.. .++...+++|++.+|.++. +|..|...+
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------ 158 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------ 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------
T ss_conf 87789999999999998688867989886489988430428999999999985592121111057899987445------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 235999999999862039999301212037999999999877068999999
Q 000323 1100 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1100 l~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
.++.|+..+..+...+ |.. .+.|..+..+|...|++++|+.
T Consensus 159 --~~~~Al~~~~~~i~~~-p~~-------~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 159 --APAEELAFTDSLITRN-FSN-------YSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp --CHHHHHHHHHTTTTTT-CCC-------HHHHHHHHHHHHHHSCCCCSSS
T ss_pred --CCHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHCCHHHHHH
T ss_conf --5289999999988718-987-------9999999999998268898999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.8e-08 Score=70.43 Aligned_cols=101 Identities=13% Similarity=-0.035 Sum_probs=69.1
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC
Q ss_conf 41026875099999999829999833789999999999973994799999999999650002561112011102689999
Q 000323 1304 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSS 1383 (1669)
Q Consensus 1304 ~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~ 1383 (1669)
...+....+...++.++...|.+.......|..+....+..++++.++...++.... .+....+.
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~~~~~~~~- 288 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN--------------ARSLRLMS- 288 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------HHHTTCHH-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------HHHCCCCH-
T ss_conf 860448989999999997622466677788999999998758799999999999988--------------76426674-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999852222332211357789999999852049899999999997110277
Q 000323 1384 PESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1384 ~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
...+.+ ..+|.+|+. .|+.++|...|++||...+..
T Consensus 289 ------~~~~~~-----------~~la~~~~~--~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 289 ------DLNRNL-----------LLLNQLYWQ--AGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp ------HHHHHH-----------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHC
T ss_conf ------799999-----------999999998--789999999999999976531
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.2e-07 Score=64.43 Aligned_cols=290 Identities=9% Similarity=-0.039 Sum_probs=167.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 22210000899999999873003554455999999999999829999-----8999999999972889712899999998
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1002 ~le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-----aelWy~Ll~lY~~~~~~eea~emlEkAV 1076 (1669)
.|.+.....+...-.|...+.++ +++.|+.++..+|+.+|.+ ..++..++.+|...|...++..+|++|+
T Consensus 4 ~~~~~~~~ae~~~lrA~~~~~~g-----~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 4 DIREDTMHAEFNALRAQVAINDG-----NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 30566213999999999999888-----9999999999998548689967999999999999998799999999999999
Q ss_pred HHCCCC---HH-------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 509988---99-------99999835897664123599999999986203999930121203799999999987706899
Q 000323 1077 KHNEGS---YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 1146 (1669)
Q Consensus 1077 elnP~N---Y~-------LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd 1146 (1669)
+..+.. .. ++..|...+ .+..|+..+....................+...+..+|...|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 150 (366)
T d1hz4a_ 79 QMARQHDVWHYALWSLIQQSEILFAQG--------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 150 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 998750114899999988878878888--------899999889999998675034125678889988878999814566
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 99999996304224899964230899998641277320468888999850160679862011233211689986553123
Q 000323 1147 KAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1226 (1669)
Q Consensus 1147 KAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdE 1226 (1669)
.++..+.......... ++...+. +... .+.++...+ +
T Consensus 151 ~a~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~-------~~~~~~~~~------------------~ 187 (366)
T d1hz4a_ 151 EAEASARSGIEVLSSY-----------------QPQQQLQ-CLAM-------LIQCSLARG------------------D 187 (366)
T ss_dssp HHHHHHHHHHHHTTTS-----------------CGGGGHH-HHHH-------HHHHHHHHT------------------C
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHH-HHHH-------HHHHHHHHH------------------H
T ss_conf 6689999988876630-----------------0246899-9988-------888887646------------------6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH------HH
Q ss_conf 78899999999988863028840234331101368677--89999997139799999999999939984148------98
Q 000323 1227 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL------VL 1298 (1669)
Q Consensus 1227 PdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKL--N~Ir~lI~LEDse~A~~LfdklLk~~P~dveL------~L 1298 (1669)
...+...+..+...+.. .+. .......+ .....+...++.+.+...+.+.++..|.+... .+
T Consensus 188 ~~~a~~~~~~a~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 188 LDNARSQLNRLENLLGN-GKY---------HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHHHHHHHHTT-SCC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HCC---------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 78888999999999987-311---------57269999999999998604489899999999976224666777889999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99998410268750999999998299--9983378999999999997399479999999999
Q 000323 1299 MKARLQKHDFGDLSSVGFEEALIKWP--KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1358 (1669)
Q Consensus 1299 ~AAyL~~K~m~~~Aisvle~AL~~~P--kNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff 1358 (1669)
..+|+..++ ...+...|+.++.... ...+....+|..+....++.+++++|+..+++.+
T Consensus 258 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 258 ARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999987587-9999999999998876426674799999999999998789999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.1e-08 Score=73.29 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCH
Q ss_conf 5599999999999982----9999899999999997288971289999999850998899----9999983589766412
Q 000323 1029 EGMKKALSLLSRALEA----DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRL 1100 (1669)
Q Consensus 1029 g~ydAALdLLsrALEI----NPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl 1100 (1669)
..++.|+..+..+|.. +|..+.+||.++.+|...+..+++.+.|++|++++|++.. ++..|...+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g------- 85 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG------- 85 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHH-------
T ss_conf 7999999999999876336999999999999999998799999999999854349998899960042788877-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 35999999999862039999301212037999999999877068999999999630
Q 000323 1101 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1101 ~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.|++|+..|.++.... |+. .++++.+..+|...|++++|+..+.+..
T Consensus 86 -~~~~A~~~~~~al~~~-p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 86 -NFDAAYEAFDSVLELD-PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFY 132 (259)
T ss_dssp -CHHHHHHHHHHHHHHC-TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -7887523446899987-611-------1158889999998766799999999998
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.5e-08 Score=70.83 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=145.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9829999899999999997288971289999999850998899999----998358976641235999999999862039
Q 000323 1042 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1042 LEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~Lwl----mYInsr~slddrl~~YdkAI~vLe~las~~ 1117 (1669)
+..+|.-++++..++.++.+.+..+++.+.+++|++++|.++..|. .+...+ . .|++|+..+......+
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~----~---~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ----K---DLHEEMNYITAIIEEQ 108 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----C---CHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHH
T ss_conf 22697799999999999995886699999999999879887699999999999837----6---7999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99930121203799999999987706899999999963042248999642308999986412773204688889998501
Q 000323 1118 DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRK 1197 (1669)
Q Consensus 1118 ~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrv 1197 (1669)
|+. .++|..+..++...|++++||..+.+... ++..+. .+|.-
T Consensus 109 -p~~-------~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~------------------~a~~~--------- 151 (315)
T d2h6fa1 109 -PKN-------YQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNY------------------HAWQH--------- 151 (315)
T ss_dssp -TTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCH------------------HHHHH---------
T ss_pred -HHH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCH------------------HHHHH---------
T ss_conf -742-------26898875888850537889988755543--210046------------------88998---------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 60679862011233211689986553123788999999999888630288402343311013686778999999713979
Q 000323 1198 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLE 1277 (1669)
Q Consensus 1198 LPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse 1277 (1669)
.|.++...+...+|+.. +.++++.+|.+..+....+.-+-. .+ .+......+
T Consensus 152 -~~~~~~~~~~~~~Al~~---~~~al~~~p~n~~a~~~r~~~l~~--~~----------------------~~~~~~~~~ 203 (315)
T d2h6fa1 152 -RQWVIQEFKLWDNELQY---VDQLLKEDVRNNSVWNQRYFVISN--TT----------------------GYNDRAVLE 203 (315)
T ss_dssp -HHHHHHHHTCCTTHHHH---HHHHHHHCTTCHHHHHHHHHHHHH--TT----------------------CSCSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHH--CC----------------------CCCHHHHHH
T ss_conf -87788888866789999---999998797449999889999987--45----------------------631023547
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 999999999993998414898999984102687509999999982999983378
Q 000323 1278 CSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1331 (1669)
Q Consensus 1278 ~A~~LfdklLk~~P~dveL~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~ 1331 (1669)
+++..+.++++..|.+..+|.+...+..+.+..++...++.++.+.|+....+.
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 767999999984988569999987798862718899999999972877578999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.5e-08 Score=72.22 Aligned_cols=121 Identities=11% Similarity=-0.091 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH---
Q ss_conf 00899999999873003554455999999999999829999899999999997288971289999999850998899---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~--- 1084 (1669)
...+.|..++..+... |+++.|+..|.++|+++|+.+.+|+.++.+|..+++..++.++|++|++++|.+..
T Consensus 35 ~~a~~~~~~G~~y~~~-----g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 109 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSL-----GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109 (259)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987-----99999999999854349998899960042788877788752344689998761111588
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf -99999835897664123599999999986203999930121203799999999987706899999
Q 000323 1085 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1149 (1669)
Q Consensus 1085 -LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1149 (1669)
++..|...+ .++.|+..+.......+.+ ......+.-.+...+..+.+.
T Consensus 110 ~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 110 NRGIALYYGG--------RDKLAQDDLLAFYQDDPND--------PFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999876--------6799999999998653000--------788899999998853587899
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.4e-08 Score=69.17 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHH
Q ss_conf 999998730035--54455999999999999829999899999999997288971289999999850998899----999
Q 000323 1014 VEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1087 (1669)
Q Consensus 1014 LelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----Lwl 1087 (1669)
|+-|..+..+.. ...++|+.|+..|..+|+++|+++.+|+.++.+|..++...++.++|++|++++|.+.. ++.
T Consensus 7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999995899999998660211000113332456788874054212888899999875446687799999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCHHHHHH
Q ss_conf 9983589766412359999999998620399993012120379999999998--77068999999
Q 000323 1088 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF--CMSGNTEKAIQ 1150 (1669)
Q Consensus 1088 mYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY--~qSGnydKAI~ 1150 (1669)
.|...+ .|++|+..|.+..... |+. .+++..+.++. ...+.+++|+.
T Consensus 87 ~~~~~g--------~~~eA~~~~~~a~~~~-p~~-------~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 87 SNMALG--------KFRAALRDYETVVKVK-PHD-------KDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999949--------9999999899998729-997-------999999999999999898999975
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=3.6e-07 Score=62.94 Aligned_cols=97 Identities=10% Similarity=0.013 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 4455999999999999829999899999999997288971289999999850998899----999998358976641235
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
..|+|+.|+..|..||+++|+++.+|+.++..|..++...++...|++|++.+|.+.. ++.+|...+ .
T Consensus 15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--------~ 86 (117)
T d1elwa_ 15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN--------R 86 (117)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------C
T ss_conf 96999999999999886199601343000110110000112100134677740220267788999999812--------7
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998620399993012120379999999998
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139 (1669)
Q Consensus 1103 YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1139 (1669)
|++|+..|.+..... |+. .+++..+-.+.
T Consensus 87 ~~~A~~~~~~a~~~~-p~~-------~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANN-------PQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHH
T ss_conf 999999999999849-898-------99999999783
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2e-06 Score=57.94 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHH
Q ss_conf 455999999999999829999899999999997288971289999999850998899----9999983589766412359
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~Y 1103 (1669)
.++++.|+..|.. +.|.++.+|+.++.+|..+++-.++.++|++|++++|.+.. ++..|...+ .|
T Consensus 18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g--------~~ 86 (192)
T d1hh8a_ 18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--------KY 86 (192)
T ss_dssp TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CH
T ss_pred CCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_conf 7799999999986---489889999999999998589146787899999985523466788999998542--------49
Q ss_pred HHHHHHHHHHHHCCCCCCC----H----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999999986203999930----1----2120379999999998770689999999996304
Q 000323 1104 DAALSVLCRCASASDGDEM----H----ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~vLe~las~~~~Dr~----~----~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.|+..|++.....++... . .....-++++.+..+|...|++++|++.+.+-..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999867267367899866543630588999999999997899999999999983
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=1.1e-07 Score=66.40 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 4455999999999999829999899999999997288971289999999850998899----999998358976641235
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
..|+|+.|+..|..+|+++|.++.+|+.++..|...+....+..+|++|++++|.+.. ++..|...+ .
T Consensus 16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~--------~ 87 (201)
T d2c2la1 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME--------S 87 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------C
T ss_conf 86999999999999998599989999817898741000001247888888718873899999999999879--------9
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999862039
Q 000323 1103 YDAALSVLCRCASAS 1117 (1669)
Q Consensus 1103 YdkAI~vLe~las~~ 1117 (1669)
|++|+..|.++....
T Consensus 88 ~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 88 YDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998749
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=2e-06 Score=57.92 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----
Q ss_conf 0899999999873003554455999999999999829999899999999997288971289999999850998899----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~---- 1084 (1669)
+.+.++..+..+...+ +++.|...|..+++++|+++.+|+.++.+|...+...++..+|++|++++|.+..
T Consensus 15 ~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 89 (112)
T d1hxia_ 15 YHENPMEEGLSMLKLA-----NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 89 (112)
T ss_dssp GCSCHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 5899999999999876-----05899998861011211110012335456410125877410000011111100000378
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999835897664123599999999986
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRC 1113 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~vLe~l 1113 (1669)
|+..|.+.+ .+++|++.|.+.
T Consensus 90 la~~y~~~g--------~~~~A~~~l~~~ 110 (112)
T d1hxia_ 90 LAVSHTNEH--------NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHCC--------CHHHHHHHHHHH
T ss_conf 999999978--------999999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-05 Score=52.68 Aligned_cols=78 Identities=6% Similarity=-0.050 Sum_probs=39.7
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 139799999999999939984148--989999841026875099999999829999833789999999999973994799
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1350 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~a 1350 (1669)
.++++.|+..|.++ .|..+.+ .|-..|+.+++ -++|+..|++|+.++|+++. +|+++.....+.++++.|
T Consensus 18 ~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~~~----a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAV----AYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp TTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCHHHH
T ss_conf 77999999999864---89889999999999998589-14678789999998552346----678899999854249999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000323 1351 AELMDRWF 1358 (1669)
Q Consensus 1351 i~L~~~ff 1358 (1669)
+.-+.+.+
T Consensus 90 ~~~~~kAl 97 (192)
T d1hh8a_ 90 IKDLKEAL 97 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=1.1e-05 Score=52.80 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH--H--------HHHHHHH-CCC
Q ss_conf 9999999999982------999989999999999728897128999999985099889--9--------9999983-589
Q 000323 1032 KKALSLLSRALEA------DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--A--------LWLMYIN-SRT 1094 (1669)
Q Consensus 1032 dAALdLLsrALEI------NPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY--~--------LwlmYIn-sr~ 1094 (1669)
+.|...|.+|+++ .+..+.+|..++.+|.+++...++.+++++|+++.+.+- . ++.+|.. .+
T Consensus 54 ~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 132 (290)
T d1qqea_ 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH- 132 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999987599889999999999999980885888999997667765325320589999998886764787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 76641235999999999862039999301212037999999999877068999999999630
Q 000323 1095 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1095 slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.|++|+..|.+.......+ ........++..+..+|...|+|++|+..+.++.
T Consensus 133 -------~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 133 -------DYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp -------CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf -------8999988999999998733--7603334688999999998173999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=1.5e-05 Score=52.04 Aligned_cols=119 Identities=11% Similarity=0.043 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 0008999999998730035--5445599999999999982----------------999989999999999728897128
Q 000323 1007 ELSNEQCVEMALLILNQDA--NKLEGMKKALSLLSRALEA----------------DPTSEILWITYLLIFYSNTNSVGK 1068 (1669)
Q Consensus 1007 ~~d~elWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEI----------------NPtSaelWy~Ll~lY~~~~~~eea 1068 (1669)
+.+.+.|++.|..+-.... ...++|..|+..|..||+. +|..+.+|..++..|.+++.-.++
T Consensus 17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 96 (169)
T d1ihga1 17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 96 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 74099999999999999999999088999999999998741111666655778771902399999899999864021013
Q ss_pred HHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999850998899----999998358976641235999999999862039999301212037999999999877
Q 000323 1069 DDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM 1141 (1669)
Q Consensus 1069 ~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~q 1141 (1669)
...|.+|++++|.+.. ++..|.+.+ .|+.|+..|....... |+. .++...+..++..
T Consensus 97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~--------~~~~A~~~~~~al~l~-p~n-------~~~~~~l~~~~~~ 157 (169)
T d1ihga1 97 VDSCLEALEIDPSNTKALYRRAQGWQGLK--------EYDQALADLKKAQEIA-PED-------KAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHH
T ss_conf 66655443100022367776999999804--------7999999999999859-899-------9999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=1.1e-05 Score=52.81 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999997288971289999999850998899----99999835897664123599999999986203999930121
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHAS 1125 (1669)
Q Consensus 1050 elWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~S 1125 (1669)
..|+..+..+.+.+.-.++..+|++|++.+|++.+ |+..|...+ .+++|+..|.+..... |+.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~al~~~-p~~---- 83 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLD-PKD---- 83 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--------HHHHHHCCCCCCCCCC-CCC----
T ss_conf 999999999998760589999886101121111001233545641012--------5877410000011111-100----
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 2037999999999877068999999999630
Q 000323 1126 ACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1126 a~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.++++.+..+|...|++++|+..+.|.+
T Consensus 84 ---~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 ---IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---0003789999999789999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=7.1e-05 Score=47.37 Aligned_cols=97 Identities=6% Similarity=-0.023 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999998730035--54455999999999999829999899---------------999999997288971289999999
Q 000323 1013 CVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEIL---------------WITYLLIFYSNTNSVGKDDMFSYS 1075 (1669)
Q Consensus 1013 WLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSael---------------Wy~Ll~lY~~~~~~eea~emlEkA 1075 (1669)
=|+.|..+-..+. ...++|+.|...|..||++.|..... |.-++..|++.+.-.++..++++|
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999999999699999999999998875101000357776406467999999999988642110110000000
Q ss_pred HHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 850998899----999998358976641235999999999862039
Q 000323 1076 VKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1076 VelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~ 1117 (1669)
++++|.+.. ++..|...+ .|++|+..|.......
T Consensus 89 l~~~p~~~~a~~~~g~~~~~~g--------~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 89 LELDSNNEKGLSRRGEAHLAVN--------DFELARADFQKVLQLY 126 (170)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC
T ss_conf 1002231034677799998722--------2999999999999729
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=4.8e-05 Score=48.53 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99899999999997288971289999999850998899----99999835897664123599999999986203999930
Q 000323 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1122 (1669)
Q Consensus 1047 tSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~ 1122 (1669)
.+++.+...+..|+..+.-.++...|++|++.+|.+.. ++..|...+ .|++|+..|..+.... |+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--------~~~~Ai~~~~~al~l~-p~~- 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELD-GQS- 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSC-TTC-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-CCC-
T ss_conf 649999999999998699999999999999859998999981789874100--------0001247888888718-873-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 12120379999999998770689999999996304
Q 000323 1123 HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1123 ~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+.|+.+..+|...|++++|+..+.+...
T Consensus 72 ------~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 72 ------VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------89999999999987999999999999987
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.5e-06 Score=53.62 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH-----------HHHHHHHCCC
Q ss_conf 54455999999999999829999899999999997288971289999999850998899-----------9999983589
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----------LWLMYINSRT 1094 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~-----------LwlmYInsr~ 1094 (1669)
...++|+.|+..|.++|+++|+++.+|+.++..|..++.-..+.+.|++|++++|.+.. ++..|...+
T Consensus 15 ~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~- 93 (128)
T d1elra_ 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE- 93 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 9859999999999999884964589998688999881860778999999998680127889889999999999999938-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 76641235999999999862039999
Q 000323 1095 PLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1095 slddrl~~YdkAI~vLe~las~~~~D 1120 (1669)
.|++|+..|....... ++
T Consensus 94 -------~~~~A~~~~~kal~~~-~~ 111 (128)
T d1elra_ 94 -------KYKDAIHFYNKSLAEH-RT 111 (128)
T ss_dssp -------CHHHHHHHHHHHHHHC-CC
T ss_pred -------CHHHHHHHHHHHHHCC-CC
T ss_conf -------8999999999998459-99
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=3.5e-05 Score=49.47 Aligned_cols=94 Identities=6% Similarity=-0.008 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHCCCCHH----HHHHHHHC
Q ss_conf 44559999999999998299998999999999972889----------71289999999850998899----99999835
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------SVGKDDMFSYSVKHNEGSYA----LWLMYINS 1092 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~----------~eea~emlEkAVelnP~NY~----LwlmYIns 1092 (1669)
..+.++.|+..|..+++++|+++.+|+.++..+...+. -+++...|++|++++|.+.. ++..|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 87369999999999986188310899999999987621333367788788899999998873012058776689999870
Q ss_pred CCC---CCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 897---66412359999999998620399993
Q 000323 1093 RTP---LNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1093 r~s---lddrl~~YdkAI~vLe~las~~~~Dr 1121 (1669)
+.. .......|.+|+..|..+.... |+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~-P~~ 119 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQ-PDN 119 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCH
T ss_conf 1011357889886787631211000259-888
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=3.8e-05 Score=49.24 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999998299998999999999972889712899999998509988999
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~L 1085 (1669)
+.|+..+.++++++|+++.+|+.++.+|..++...++...|++|++++|.+..+
T Consensus 54 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 54 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 121001346777402202677889999998127999999999999849898999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.95 E-value=1.5e-05 Score=52.02 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 44559999999999998299998999999999972889712899999998509988999999983589766412359999
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1106 (1669)
.-|+++.|+..|..+++.+|+++.++..|+.+|...|.-+++...|++|++++|+....+..|...-.... ....+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~----~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ----ARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----HHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCHHH
T ss_conf 88899999999999999789999999999999998799999999999999869973899999999998346----63789
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 99999862039999301212037999999999877068999999999630422489996423089999864127732046
Q 000323 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 1186 (1669)
Q Consensus 1107 I~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AW 1186 (1669)
...+.......+++. ...++.+..++...|+++.|+..+.++++ +....+. +.-..--..+.-+|..+.-
T Consensus 84 ~~~~~~~~~~~~p~~-------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e--~~p~~~~-~~~~~~f~wi~D~D~Rlg~ 153 (264)
T d1zbpa1 84 AQGAATAKVLGENEE-------LTKSLVSFNLSMVSQDYEQVSELALQIEE--LRQEKGF-LANDTSFSDVRDIDDRLGG 153 (264)
T ss_dssp TTSCCCEECCCSCHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCCE-EETTEEESCEEESSTTTTT
T ss_pred HHHHHHHHCCCCCHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCC-CCCCCCHHHHHCCCHHHHH
T ss_conf 987544420358647-------99999999999967998999999999983--3999981-0015577887443302066
Q ss_pred HHHHHH--HHHHCCCHHHH--HHHHHHHHHHCCCCCCCCCC
Q ss_conf 888899--98501606798--62011233211689986553
Q 000323 1187 VCCVYL--VIYRKLPDAVL--QLLECEKELFAIDWPPVQLE 1223 (1669)
Q Consensus 1187 L~~iYl--lrYrvLPGdiy--~q~e~~KEAl~I~W~y~~vl 1223 (1669)
+|.+.. -.|.=+|=.=+ .....++.+.++.|....+.
T Consensus 154 ~~E~~~~~G~Y~w~p~~~i~~~~~~~p~~l~d~~w~~~~~~ 194 (264)
T d1zbpa1 154 YIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFD 194 (264)
T ss_dssp EEEEECTTSCEEEEEGGGEEEEEECCCCSSGGGTEEEEEEE
T ss_pred HHHHHHCCCCEEEECHHHHHHHHCCCCCCHHHHHHHHEEEE
T ss_conf 88765247827986189853342589998898741113788
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=7.4e-05 Score=47.26 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCCH------HHHHHHHHCCCCCC
Q ss_conf 4455999999999999829999899999999997288971---28999999985099889------99999983589766
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV---GKDDMFSYSVKHNEGSY------ALWLMYINSRTPLN 1097 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~e---ea~emlEkAVelnP~NY------~LwlmYInsr~sld 1097 (1669)
+.+.++.|-..|.++|+++|.++++++.|+..++..+... ++..+|+++++.+|.+. .|+..|.+.+
T Consensus 11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g---- 86 (122)
T d1nzna_ 11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---- 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----
T ss_conf 9999999999999988329998999999999999851267899999999999860699319999999999999973----
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 412359999999998620399993
Q 000323 1098 HRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1098 drl~~YdkAI~vLe~las~~~~Dr 1121 (1669)
.|++|+..|.++.... |+.
T Consensus 87 ----~~~~A~~~~~~aL~~~-P~~ 105 (122)
T d1nzna_ 87 ----EYEKALKYVRGLLQTE-PQN 105 (122)
T ss_dssp ----CHHHHHHHHHHHHHHC-TTC
T ss_pred ----HHHHHHHHHHHHHHHC-CCC
T ss_conf ----1699999999999769-098
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00031 Score=43.06 Aligned_cols=115 Identities=5% Similarity=0.007 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HH
Q ss_conf 544559999999999998299998---------------99999999997288971289999999850998899----99
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSE---------------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSa---------------elWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----Lw 1086 (1669)
...|+|..|+..|..||.+.|... .+|.-++..|+.++...++..+|++|++++|.+.. ++
T Consensus 26 ~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~ 105 (168)
T d1kt1a1 26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 105 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99599999999999999999875001245553106467999984999987762201100022322201310488999889
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHC
Q ss_conf 999835897664123599999999986203999930121203799999999987706899-9999999630
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE-KAIQRISRLL 1156 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd-KAI~tl~rLE 1156 (1669)
..|...+ .|++|+..|.++.... |+. .+++..+..+....+.+. +.-..+.+|+
T Consensus 106 ~~~~~l~--------~~~~A~~~~~~al~l~-P~n-------~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 106 EAQLLMN--------EFESAKGDFEKVLEVN-PQN-------KAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHSC-TTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998827--------8999999999999859-898-------99999999999999869999999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.3e-05 Score=50.76 Aligned_cols=217 Identities=10% Similarity=-0.019 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH-------HHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999999829999899999999997288971289999999850998899-------99999835897664123599
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~-------LwlmYInsr~slddrl~~Yd 1104 (1669)
..|...|..|++++|+.+.+|+.++..|..+++ ..+.|++|+..+|.... ||. . .|.
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~---l~eaye~~i~~dp~~a~~~~~e~~Lw~-----~--------~y~ 66 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA---LQDLYQKMLVTDLEYALDKKVEQDLWN-----H--------AFK 66 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH---HHHHHHHHHHHCHHHHHHHTHHHHHHH-----H--------HTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCH---HHHHHHHHHHCCHHHHHHHHHHHHHHH-----H--------HHH
T ss_conf 899999999987199979999519999999762---999999998749301999857999999-----9--------999
Q ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999999862039-999301212037999-99999987706899999999963042248999642308999986412773
Q 000323 1105 AALSVLCRCASAS-DGDEMHASACILDLF-LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1105 kAI~vLe~las~~-~~Dr~~~Sa~iLDIL-L~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDK 1182 (1669)
.+++.+-...+.. .++. ..+. ..+..++..++.|++||..+..... ..+ .+.
T Consensus 67 ~~ie~~r~~~k~~~~~~~-------~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~-----l~~--------------~~~ 120 (497)
T d1ya0a1 67 NQITTLQGQAKNRANPNR-------SEVQANLSLFLEAASGFYTQLLQELCTVFN-----VDL--------------PCR 120 (497)
T ss_dssp HHHHHHHHHHSCSSCTTT-------THHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCH--------------HHH
T ss_conf 999999985616458437-------999999999999999999999999999878-----991--------------139
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHH
Q ss_conf 20468888999850160679862011233211689986553123788999999999888630288402343311013686
Q 000323 1183 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1262 (1669)
Q Consensus 1183 c~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~t 1262 (1669)
.+ + ...|..+...+...+|..- +...+..+|..++ +.+|
T Consensus 121 -~~---------~-~~lg~~~~~~~~~~~A~~~---~~~al~~~~~~~~--~~LG------------------------- 159 (497)
T d1ya0a1 121 -VK---------S-SQLGIISNKQTHTSAIVKP---QSSSCSYICQHCL--VHLG------------------------- 159 (497)
T ss_dssp ------------------------------------CCHHHHHHHHHHH--HHHH-------------------------
T ss_pred -HH---------H-HHHHHHHHHCCCHHHHHHH---HHHHHCCCHHHHH--HHHH-------------------------
T ss_conf -99---------9-9857998758999999999---9988278899999--9999-------------------------
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7789999997139799999999999939984148--98999984102687509999999982999983378999999999
Q 000323 1263 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1263 KLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
..+...++.+.|+..|.++++..|.+... .|...|....+ ..+|+.-|.++|...|.... +|.-|...
T Consensus 160 -----~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~----a~~nL~~~ 229 (497)
T d1ya0a1 160 -----DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPA----ASTNLQKA 229 (497)
T ss_dssp -----HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHH----HHHHHHHH
T ss_pred -----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHH----HHHHHHHH
T ss_conf -----999980247899999999998789965999999999998699-99999999999817999789----99999999
Q ss_pred H
Q ss_conf 9
Q 000323 1341 A 1341 (1669)
Q Consensus 1341 a 1341 (1669)
.
T Consensus 230 ~ 230 (497)
T d1ya0a1 230 L 230 (497)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00011 Score=46.19 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999997288971289999999850998899----9999983589766412359999999998620399993012120379
Q 000323 1055 YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILD 1130 (1669)
Q Consensus 1055 Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLD 1130 (1669)
.+..|++.+.-.++...|++|++++|.+.. ++..|+..+ .+++|+..|..+...+ |+. .+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~kal~~~-p~~-------~~ 79 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELD-KKY-------IK 79 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHC-CCC-------HH
T ss_conf 9999999589999999866021100011333245678887405--------4212888899999875-446-------68
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999998770689999999996304
Q 000323 1131 LFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1131 ILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+|..+..+|...|+++.|+..+.+...
T Consensus 80 a~~~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 80 GYYRRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 779999999994999999998999987
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.79 E-value=0.0003 Score=43.15 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 5599999999999982999
Q 000323 1029 EGMKKALSLLSRALEADPT 1047 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPt 1047 (1669)
++|..|+..|..||++.|.
T Consensus 31 ~~y~~A~~~Y~~al~~~~~ 49 (153)
T d2fbna1 31 NEINEAIVKYKEALDFFIH 49 (153)
T ss_dssp TCHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 9999999999987760730
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.75 E-value=0.00045 Score=41.96 Aligned_cols=121 Identities=11% Similarity=-0.012 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 008999999998730035--------544559999999999998299998999999999972889712899999998509
Q 000323 1008 LSNEQCVEMALLILNQDA--------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1008 ~d~elWLelAl~~Lnq~~--------n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVeln 1079 (1669)
.|.+-.|+-|.+.+.... ..+.+|+.|.++|.++ +.+|...+.-.++.++|++|+++.
T Consensus 2 ~~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHH--------------HHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 989999999998647324699885377643699999999999--------------999998869999999999999999
Q ss_pred CC--C-------HH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCHHHH
Q ss_conf 98--8-------99-999998358976641235999999999862039999301212037999999999877-0689999
Q 000323 1080 EG--S-------YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM-SGNTEKA 1148 (1669)
Q Consensus 1080 P~--N-------Y~-LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~q-SGnydKA 1148 (1669)
+. + |. ++.+|...+ .+++|+..|.+..... +.. ........++..+..+|-. .|++++|
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~--------~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A 137 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGG--------NSVNAVDSLENAIQIF-THR-GQFRRGANFKFELGEILENDLHDYAKA 137 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 875998899999999999999808--------8588899999766776-532-532058999999888676478789999
Q ss_pred HHHH
Q ss_conf 9999
Q 000323 1149 IQRI 1152 (1669)
Q Consensus 1149 I~tl 1152 (1669)
|..+
T Consensus 138 ~~~~ 141 (290)
T d1qqea_ 138 IDCY 141 (290)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8899
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=3.2e-05 Score=49.75 Aligned_cols=114 Identities=13% Similarity=-0.057 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH--HHHHHHHCCCCCCCCHHHHHH
Q ss_conf 455999999999999829999899999999997288971289999999850998899--999998358976641235999
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~--LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+.|+.|+..|..++.++|..+.+|+.++..|...+....+...+.+|++.+|..-. |+.+|...+ .|++
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~--------~~~~ 170 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRN--------QTSQ 170 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTT--------CHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CHHH
T ss_conf 99999999999998789911399999857998758999999999998827889999999999999802--------4789
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999998620399993012120379999999998770689999999996304
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1106 AI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|+..|.++.... |+. -+++.+|..+|...|++..|+.-+.|-..
T Consensus 171 A~~~y~~A~~l~-P~~-------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 171 AESYYRHAAQLV-PSN-------GQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHC-TTB-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999878-996-------59999999999986999999999999981
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.00028 Score=43.36 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 00008999999998730035544559999999999998299998999999999972889712899999998509988999
Q 000323 1006 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1006 ~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~L 1085 (1669)
.+.....|..+|..++.. ++|+.|+..+.+||+++|+.+.+|+.++..|..++.-.++.+.|++|++++|+|-.+
T Consensus 73 ~~~~~~~~~nla~~~~~~-----~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 73 QPVALSCVLNIGACKLKM-----SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 902399999899999864-----021013666554431000223677769999998047999999999999859899999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.00017 Score=44.84 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=64.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-----------C
Q ss_conf 222100008999999998730035-----544559999999999998299998999999999972889-----------7
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-----------S 1065 (1669)
Q Consensus 1002 ~le~~~~d~elWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~-----------~ 1065 (1669)
=|+..|.+.+.|..++..++.... ...+.++.|+..|.++|+++|+++.+|+.++..|..++. -
T Consensus 23 al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~ 102 (145)
T d1zu2a1 23 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF 102 (145)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98618831089999999998762133336778878889999999887301205877668999987010113578898867
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12899999998509988999999983589766412359999999998620
Q 000323 1066 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1066 eea~emlEkAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~vLe~las 1115 (1669)
..+.++|++|++++|+|...+ ...+ .+.+|++.+.+..+
T Consensus 103 ~~A~~~~~kal~l~P~~~~~~---~~L~--------~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 103 DLATQFFQQAVDEQPDNTHYL---KSLE--------MTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH---HHHH--------HHHTHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHH---HHHH--------HHHHHHHHHHHHHH
T ss_conf 876312110002598889999---9999--------99997978999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.00041 Score=42.21 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999829999899999999997288971289999999850998899
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~ 1084 (1669)
+.|+..+..||+++|+++.+|+.++..|..++...++...|++|++++|+|-.
T Consensus 84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 01110100010000000124677689999968999999999999982989899
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00031 Score=43.08 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9999999873003554455999999999999829999899999999997288971289999999850998899
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~ 1084 (1669)
++..+|.-++.. ++|+.|+..+.++|+++|+++.+|+.++.+|..++.-.++...|++|++++|+|..
T Consensus 64 ~~~nla~~y~k~-----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 64 SHLNLAMCHLKL-----QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHH-----HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 999999998864-----21101100000001002231034677799998722299999999999972989899
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00033 Score=42.83 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899999998520498999999999971102770899999989
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1448 (1669)
Q Consensus 1407 alLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1448 (1669)
-.||.+|++ .|++++|...|++||+.+|++ ..+++.-.
T Consensus 76 ~~Lg~~y~~--~g~~~~A~~~~~~aL~~~P~~--~~A~~l~~ 113 (122)
T d1nzna_ 76 FYLAVGNYR--LKEYEKALKYVRGLLQTEPQN--NQAKELER 113 (122)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf 999999999--731699999999999769098--99999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.32 E-value=0.00088 Score=39.97 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=30.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999997139799999999999939984148--98999984102687509999999982999983
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1267 Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~ 1328 (1669)
..|+..+++...|+..|.++++..|.++.. .+.-+|+.+++ -.+|+..|+.++.++|+|..
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH
T ss_conf 9998776220110002232220131048899988999988278-99999999999985989899
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0021 Score=37.34 Aligned_cols=93 Identities=6% Similarity=0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999997288971289999999850998899----999998358976641235999999999862039999301212
Q 000323 1051 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1126 (1669)
Q Consensus 1051 lWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa 1126 (1669)
.+..++..|+..++-.++..+|.+|++++|.+.. ++..|...+ .|++|+..+.++.... +.....-.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l~-~~~~~~~~ 76 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVG-RENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHH-HHSTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 99999999998599999999999998849645899986889998818--------6077899999999868-01278898
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 03799999999987706899999999
Q 000323 1127 CILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1127 ~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.+-.++..+.+.+...+++++||..+
T Consensus 77 ~~a~~~~~lg~~~~~~~~~~~A~~~~ 102 (128)
T d1elra_ 77 QIAKAYARIGNSYFKEEKYKDAIHFY 102 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999999999999938899999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.07 E-value=0.001 Score=39.46 Aligned_cols=53 Identities=9% Similarity=-0.147 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHH------------HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 5445599999999999982999989------------9999999997288971289999999850
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEI------------LWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSae------------lWy~Ll~lY~~~~~~eea~emlEkAVel 1078 (1669)
...|+|+.|+..|.++|+++|+.+. +|..++..|..+++-.++...+++|+++
T Consensus 20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 98599999999999999868442010200121027999999999999828630015766435530
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.013 Score=32.11 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999973994799999999999650002561112011102689999999999985222233221135778999999
Q 000323 1334 WNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSL 1413 (1669)
Q Consensus 1334 W~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~L 1413 (1669)
++++...+.+.++++.|+...++.+. ........ .....+.| -.||.++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~--------------~~~~~~~~------~~~~~~~l-----------~~Lg~~~ 56 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALR--------------QLDEGEIS------TIDKVSVL-----------DYLSYAV 56 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHTTCCC------SSCHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------------HHHHHHCC------CCCHHHHH-----------HHHHHHH
T ss_conf 99999999997799999999999999--------------88653014------76478999-----------9872688
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 985204989999999999711027708999999898881
Q 000323 1414 HRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1452 (1669)
Q Consensus 1414 yq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1452 (1669)
++ .|++++|...|++||+.+|.+ ..+++|.++|-.
T Consensus 57 ~~--~g~~~~A~~~y~~aL~l~P~~--~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 57 YQ--QGDLDKALLLTKKLLELDPEH--QRANGNLKYFEY 91 (95)
T ss_dssp HH--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 86--577398887887798869297--999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.45 E-value=0.022 Score=30.48 Aligned_cols=118 Identities=12% Similarity=-0.028 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999873003554455999999999999829999899999999997288971289999999850998899999998
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1011 elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~LwlmYI 1090 (1669)
+.++..+..... .|+++.|...|.+||++.|...-.++......... .......+..|. ..++..|.
T Consensus 12 ~~~~~~g~~~~~-----~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~--r~~l~~~~~~a~------~~la~~~~ 78 (179)
T d2ff4a2 12 VAEKTAGVHAAA-----AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPF--ATALVEDKVLAH------TAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHH--HHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHH------HHHHHHHH
T ss_conf 999999999998-----87999999999999863861311257631899999--999999999999------99999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 3589766412359999999998620399993012120379999999998770689999999996304
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..+ .|+.|+..+.++...+ |.. .+.+..++.+|...|++..|+..+.++..
T Consensus 79 ~~g--------~~~~Al~~~~~al~~~-P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 79 ACG--------RASAVIAELEALTFEH-PYR-------EPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HTT--------CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCC--------CCHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 879--------9057899999999849-851-------99999999999985579999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.34 E-value=0.015 Score=31.54 Aligned_cols=130 Identities=10% Similarity=-0.016 Sum_probs=81.2
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 7139799999999999939984148-989999841026875099999999829999833789999999999973994799
Q 000323 1272 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1350 (1669)
Q Consensus 1272 ~LEDse~A~~LfdklLk~~P~dveL-~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~a 1350 (1669)
..++.+.++..+.+.++..|.++++ ..++..+...+-.++|+..|+.++...|+... +|..|.......+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll~a~~~---- 79 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLVKAAQA---- 79 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCC----
T ss_conf 8889999999999999978999999999999999879999999999999986997389----99999999983466----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999965000256111201110268999999999998522223322113577899999998520498999999999
Q 000323 1351 AELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA 1430 (1669)
Q Consensus 1351 i~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDK 1430 (1669)
..++....+.......+ .+.. ...+....+.. .|+.++|...+++
T Consensus 80 -----------------~~~a~~~~~~~~~~~~p-------~~~~---------~~l~~a~~~~~--~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 80 -----------------RKDFAQGAATAKVLGEN-------EELT---------KSLVSFNLSMV--SQDYEQVSELALQ 124 (264)
T ss_dssp -----------------HHHHTTSCCCEECCCSC-------HHHH---------HHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHCCCCC-------HHHH---------HHHHHHHHHHH--CCCHHHHHHHHHH
T ss_conf -----------------37899875444203586-------4799---------99999999996--7998999999999
Q ss_pred HHHHCCCCCHHHHHHH
Q ss_conf 9711027708999999
Q 000323 1431 ALKAAASEHFKHCVRE 1446 (1669)
Q Consensus 1431 ALkanp~N~~i~cLNN 1446 (1669)
++...|.. -..|++
T Consensus 125 a~e~~p~~--~~~~~~ 138 (264)
T d1zbpa1 125 IEELRQEK--GFLAND 138 (264)
T ss_dssp HHHHCCCC--CEEETT
T ss_pred HHHCCCCC--CCCCCC
T ss_conf 98339999--810015
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.014 Score=31.75 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 00899999999873003554455999999999999829999-------89999999999728897128999999985099
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1008 ~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-------aelWy~Ll~lY~~~~~~eea~emlEkAVelnP 1080 (1669)
+..+-|.++...+..+ |+|+.|...|..||+++|.. +.++..++..|++.++-.++.+++++|++++|
T Consensus 3 Lsaddc~~lG~~~~~~-----g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTE-----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 5699999999999997-----79999999999999988653014764789999872688865773988878877988692
Q ss_pred CCHHH
Q ss_conf 88999
Q 000323 1081 GSYAL 1085 (1669)
Q Consensus 1081 ~NY~L 1085 (1669)
++...
T Consensus 78 ~~~~a 82 (95)
T d1tjca_ 78 EHQRA 82 (95)
T ss_dssp TCHHH
T ss_pred CCHHH
T ss_conf 97999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.015 Score=31.52 Aligned_cols=77 Identities=5% Similarity=0.037 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 0008999999998730035544559999999999998299998-999999999972889712899999998509988999
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE-ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1007 ~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa-elWy~Ll~lY~~~~~~eea~emlEkAVelnP~NY~L 1085 (1669)
....|..+.+|...+.+. ..++.+.|..+|..++..+|... ++||.++..|+++++-+.+..+|+++++..|+|-.-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~--~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKST--DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 988101999999998279--688999999999999854950599999999999998732999999999998239984999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.00 E-value=0.037 Score=28.93 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999973994799999999
Q 000323 1333 IWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1333 aW~QLIq~al~~~n~d~ai~L~~~ 1356 (1669)
+|..+++.....++++.++..+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999999887990578999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.28 E-value=0.12 Score=25.49 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9999999998770689999999996
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~r 1154 (1669)
.++..+..+|...|+++.||..+.+
T Consensus 101 ~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 101 SAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8775269999988888888999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=85.54 E-value=0.73 Score=20.16 Aligned_cols=95 Identities=11% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHCCCCHH--
Q ss_conf 999999998730035544559999999999998299998999999999972----88971289999999850998899--
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYS----NTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1011 elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~----~~~~eea~emlEkAVelnP~NY~-- 1084 (1669)
+.|+.++..+.++ +++..|+..|.++.+. .++.+++.++.+|.. .+....+...+++|++..-....
T Consensus 3 ~~~~~lG~~~~~~-----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~ 75 (265)
T d1ouva_ 3 KELVGLGAKSYKE-----KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 9999999999987-----7999999999999978--99999999999998099960569999875012221111112313
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999835897664123599999999986203
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~vLe~las~ 1116 (1669)
|+.++.... .... .++.|+..|......
T Consensus 76 l~~~~~~~~-~~~~---~~~~a~~~~~~a~~~ 103 (265)
T d1ouva_ 76 LGNLYYSGQ-GVSQ---NTNKALQYYSKACDL 103 (265)
T ss_dssp HHHHHHHTS-SSCC---CHHHHHHHHHHHHHT
T ss_pred CCCCCCCCC-CCCH---HHHHHHHHHHHHHHH
T ss_conf 501224321-1212---367798887655432
|