Citrus Sinensis ID: 000325
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | 2.2.26 [Sep-21-2011] | |||||||
| O97159 | 1982 | Chromodomain-helicase-DNA | yes | no | 0.025 | 0.021 | 0.534 | 1e-08 | |
| Q6PDQ2 | 1915 | Chromodomain-helicase-DNA | yes | no | 0.055 | 0.048 | 0.307 | 4e-08 | |
| Q22516 | 1787 | Chromodomain-helicase-DNA | yes | no | 0.028 | 0.026 | 0.489 | 5e-08 | |
| Q14839 | 1912 | Chromodomain-helicase-DNA | yes | no | 0.055 | 0.048 | 0.307 | 6e-08 | |
| Q9ULU4 | 1186 | Protein kinase C-binding | no | no | 0.055 | 0.078 | 0.303 | 1e-07 | |
| Q8TDI0 | 1954 | Chromodomain-helicase-DNA | no | no | 0.025 | 0.021 | 0.488 | 1e-07 | |
| O88491 | 2588 | Histone-lysine N-methyltr | no | no | 0.025 | 0.016 | 0.456 | 4e-07 | |
| Q96L73 | 2696 | Histone-lysine N-methyltr | no | no | 0.025 | 0.015 | 0.456 | 4e-07 | |
| G5EBZ4 | 1829 | Protein let-418 OS=Caenor | no | no | 0.027 | 0.024 | 0.521 | 5e-07 | |
| O16102 | 892 | Chromodomain-helicase-DNA | no | no | 0.025 | 0.047 | 0.476 | 6e-07 |
| >sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 377 CRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECA 419
CR+C G LLCCD CPSAYHT C+ +P+G W CP C+
Sbjct: 440 CRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482
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Vital role in development. Protein binds to a portion of Hunchback (HB) protein that is critical for repression of bithorax complex (BXC) genes. May also function in polycomb group (PcG) repression of Hox genes. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9ULU4|PKCB1_HUMAN Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1 | Back alignment and function description |
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| >sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | ||||||
| 449456180 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.920 | 0.456 | 0.0 | |
| 356564737 | 1608 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.948 | 0.463 | 0.0 | |
| 356541977 | 1613 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.956 | 0.468 | 0.0 | |
| 224104983 | 1604 | predicted protein [Populus trichocarpa] | 0.572 | 0.594 | 0.573 | 0.0 | |
| 359479395 | 1582 | PREDICTED: uncharacterized protein LOC10 | 0.607 | 0.639 | 0.569 | 0.0 | |
| 297734860 | 1382 | unnamed protein product [Vitis vinifera] | 0.593 | 0.715 | 0.532 | 0.0 | |
| 297808265 | 1562 | PHD finger family protein [Arabidopsis l | 0.559 | 0.596 | 0.507 | 0.0 | |
| 30688628 | 1566 | PHD finger family protein [Arabidopsis t | 0.557 | 0.593 | 0.515 | 0.0 | |
| 356544696 | 1644 | PREDICTED: uncharacterized protein LOC10 | 0.578 | 0.585 | 0.475 | 0.0 | |
| 356541435 | 1612 | PREDICTED: uncharacterized protein LOC10 | 0.574 | 0.593 | 0.473 | 0.0 |
| >gi|449456180|ref|XP_004145828.1| PREDICTED: uncharacterized protein LOC101215849 [Cucumis sativus] gi|449510841|ref|XP_004163779.1| PREDICTED: uncharacterized LOC101215849 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 1405 bits (3638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 805/1765 (45%), Positives = 1078/1765 (61%), Gaps = 182/1765 (10%)
Query: 20 DEDVTDGAGGKKRVV-AVEAKPIALVGRYVLKEFE-SGIFLGKIVYYESGLYRVDYEDGD 77
+ D+ DG K + + + +P+AL+GRY+LKEF SG +LGK+VYYE GLYRV YEDGD
Sbjct: 18 NNDLQDGNDDAKSALESCKRRPVALLGRYLLKEFNGSGKYLGKVVYYEEGLYRVVYEDGD 77
Query: 78 CEDLDSSELRQFLLNENDFDADLTRRRKKLDDWLVKRSLKNEKSNLEKKDGDAKSEVDRI 137
EDL+S E+R L+ ++ D L++R+K+LDD L R + + K D ++D +
Sbjct: 78 SEDLESGEIRGLLIGDSYLDDGLSKRKKRLDD-LADRIKAKCANGMGKNSTDTSDKLDPV 136
Query: 138 EASTLSEVSCGLTVEDVGEQVEGDMDSSSDSCEHVRETDAGLEAETPLLPPPQLPPSSGT 197
AS S+VS +++ E+VE D++SSSDS E VR+ D+ E L+PPP+ PPSSGT
Sbjct: 137 -ASVPSKVSSEHIMQNDAEEVEADVESSSDSLESVRDRDSEFGDENLLIPPPEFPPSSGT 195
Query: 198 I----------------------------------------------------ALMRVLR 205
I ALMR LR
Sbjct: 196 IGIQEQHVSHLLSVYGFLRSFSVRLFLFPFSLDDFVGSLNCGVANTLLDSIHVALMRALR 255
Query: 206 RHLETLSSDGSELASNCLRCIDWSLLDTLTWPVYVVQYLTSMGYIKGTQWTGFYDEVSVR 265
RHLE LSSDG E+AS CLR +W+LLD+LTWPVY+VQYLT MG+ KG +W GFY
Sbjct: 256 RHLEVLSSDGLEIASKCLRHFNWNLLDSLTWPVYLVQYLTVMGHAKGLEWNGFYKHALGN 315
Query: 266 EYYSLSAGRKLMILQILCDDVLDSEELRAEIDAREESEVGLDPDA-ASYGSEIARRRVHP 324
EYYS+ AGRKL++LQILCD+VL+S ELRAEIDARE SEVGLD DA A+ SE RRVHP
Sbjct: 316 EYYSIPAGRKLLVLQILCDEVLESGELRAEIDAREISEVGLDYDAGATCLSENGPRRVHP 375
Query: 325 RFSKTPDCKNREAVEFNAENDRMKTSCKAKPLGFKGT---EMDAPGVDVDGNGDECRICG 381
R+ KT CK+ EA+E N+ K+ G KG ++D VD + N DECR+CG
Sbjct: 376 RYPKTSACKDGEAMEIIVLNNGTKSYSDQNFSGLKGGSNGDLDVTAVDANRNSDECRLCG 435
Query: 382 MDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGTSLRGAELFGI 441
MDG+LLCCDGCPSAYH RCIG+ K+ +P+G WYCPEC+INK P +T G++LRGAE+FGI
Sbjct: 436 MDGSLLCCDGCPSAYHLRCIGMVKVLIPQGPWYCPECSINKSEPTITKGSALRGAEVFGI 495
Query: 442 DLYERVFLGTCNHLLVLNASSNTEQYIRYYNPIDIPKVLQALLSSVQHVSLYLGICKAIL 501
D YE +FLG+CNHL+VL +S N+E ++YYN DI KVL L SS Q +++Y GICKAI+
Sbjct: 496 DPYEHIFLGSCNHLVVLKSSINSEPCLKYYNRNDILKVLHLLCSSSQSIAIYYGICKAIM 555
Query: 502 HYWDIPESVVPF---MGMETNTINAKADEKFCSQSHHPPIKESQRITDMVEAGNASSNNG 558
YWDIPE+++ GM+ + + D +QS+ P E ++ DM+E GN +
Sbjct: 556 QYWDIPENLLVLPEASGMDVVPADLREDTNLYAQSN--PSGEERKELDMIENGNDPATCK 613
Query: 559 SNVDNVAVSSLHTFMNTMSQTGVPFVQSNDITVTEKLQDCLVLNGKLPGHVKMESAMSTG 618
S V+N + +LH + + P D G +P +S +S G
Sbjct: 614 SEVNN-KLGTLH-----VETSQDPLSHPTD-------------RGTMPPECVGKSVLSNG 654
Query: 619 --------SVSQQADPSDVTYQSLVDRSSAIDFMTCTSQISNDGNSGH---ASSCLSPNI 667
++S+ + +D+ ++VD I T S S + + H A++ +S N
Sbjct: 655 FNVDSLTSNISRPNNLTDIACPNMVD----ISSTTDLSSSSGNKSFSHIRNANASISLN- 709
Query: 668 SFLSKERNHGGLLGVG-----TNYANKCAFMGSVFKPHSYINQYMHGEFAAAAAAKLAVL 722
LS++ +GGLL G + CA+MGS +KP +++N Y HGEFAA+AA KL VL
Sbjct: 710 --LSRQSQNGGLLSHGKVKGDIKSTSSCAYMGSQYKPQAFVNHYAHGEFAASAAHKLDVL 767
Query: 723 SSEESQASEMHKSGNTRKAMSGSISLQAKAFSSTASRFFWPCSERKLWEVPRERCSWCYS 782
+SEE++ + ++ S + + LQAKAFS +ASRFFWP ++KL EVPRERC WC S
Sbjct: 768 TSEETRVTGINASDKRNSSTASYALLQAKAFSQSASRFFWPTFDKKLMEVPRERCGWCLS 827
Query: 783 CKSPPSNRRGCMLNSAMTVATKSAMKILNGLLAPKTGEGNLPTIVTYIMYMEESLCGLIS 842
C++ +++GC+LN A AT+SAMKIL+ L K GEGNLP I YI+YMEESL GL+
Sbjct: 828 CRATVLSKKGCLLNHAALTATRSAMKILSSLRVGKNGEGNLPCIAVYILYMEESLRGLVG 887
Query: 843 GPFRSVSYRKKWRKQVAEACTLNSIKALLLELEENICHIALSGDWVKLMDDWLGDSSVIQ 902
GPF + SYRKKWR Q+ + + IK LLLELEENI IALSG+W KL+D+W ++S+IQ
Sbjct: 888 GPFLNASYRKKWRHQLESTLSCSLIKILLLELEENIRCIALSGNWFKLVDEWFLETSMIQ 947
Query: 903 SASCNFVTTQKRGLSGKRGRKHSVISEVTADDCNDQSFSWWQGGKSTKLISKKAILPHTI 962
+A TT + G+RGRK SV SEV + D ++ +F W++GG S KL+ ++A LP I
Sbjct: 948 NAPSAVGTTVHKRGPGRRGRKQSV-SEVPSHDRSNANFVWFRGGIS-KLVFQRAALPQFI 1005
Query: 963 IRNAARRGGLRKISGVNYT--AEMPKRSRQLVWRAAVERSKTVSQLALQVRYIDLHVRWS 1020
+ AAR+GG RKI+G++YT +E+P+RSRQLVWRAAVE SK SQLALQ+R +D H+RW+
Sbjct: 1006 VAKAARQGGSRKIAGIHYTDGSEIPRRSRQLVWRAAVEASKNASQLALQLRNLDFHLRWN 1065
Query: 1021 ELVRPEQNLQDGKGPETEAFAFRNAIICDKKIVENKIRYGVAFGIHRHLPSRVMKNIIDI 1080
+LVRPEQ QD KG ETEA FRNA I DKK+VENKI YGVAFG +HLPSRVMKN+I+I
Sbjct: 1066 DLVRPEQTFQDMKGQETEASVFRNASISDKKVVENKITYGVAFGSQKHLPSRVMKNVIEI 1125
Query: 1081 ELSQDGKEKYWFPETCLPLFLIKEYEERVDMVIAPSSKKPSNELSEFQKKQLKASRKDLF 1140
E QDGK YWF E C+PL+L+KEYEE V K N +++ +K+ ++++F
Sbjct: 1126 EQKQDGKVAYWFSENCIPLYLVKEYEEGSLQVNVSPPKVYQNIPYHSRRRWVKSYQREIF 1185
Query: 1141 SYLVCRRDKIEKCACASCQIDVLLGNAVKCGTCQGYCHEGC-TSSSMHMNSGVEPMIVCN 1199
YL CRRD + +C+SCQ++VL+ NAVKC C+GYCH C S++ V I CN
Sbjct: 1186 FYLTCRRDNMGLLSCSSCQMEVLIRNAVKCSLCRGYCHVSCIVRSTISATEDVVGPITCN 1245
Query: 1200 RCYLPRALATSEIRSESPTSPLPLHRQEYHTAVKVSKGTRPKGFN--------------- 1244
+C +AL S +ESPTSPLPL + + ++ V K +PKG N
Sbjct: 1246 QCCHLKALNHSGNSTESPTSPLPLQGKGHRSSSTVRKSVKPKGSNQLPVTPVIKLDTRTE 1305
Query: 1245 --QALASIRTQESSESKQ----------------TVSDSSTVTKTRNRTLSWGIIWRKKN 1286
QA + I+ SE KQ T DS + K++ R SWGIIW+KK+
Sbjct: 1306 KKQATSVIKLDTRSEKKQATSVIKLDTRSEKKQATTRDSGSAPKSQRRNCSWGIIWKKKS 1365
Query: 1287 IEDAGADFRRANVLPRGKS-VAHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEE 1345
ED A+FR +L +G + H EPVC LC +PY S+LMYI CE C+ W+HADAV LEE
Sbjct: 1366 DEDTIANFRHNYLLLKGGGELHHKEPVCHLCSKPYRSDLMYICCEACKNWYHADAVALEE 1425
Query: 1346 SKLSDVVGFKCCRCRRIGGPECPYMDPELKEQKRKKDQKRKKDQKRKKQQLNAPKQGQGS 1405
SK+ +V+GFKCCRCRRI PECPYMDP + K+D +K K KQ+ +A
Sbjct: 1426 SKIFEVMGFKCCRCRRIKSPECPYMDP----KPEKQDGGKKTRAKLSKQENSA------- 1474
Query: 1406 MRVDSDDG-TISESKEFKLTTPMYPMEEMFVPEDDPLLFSLSTVELITEPNSEVDCGWN- 1463
V+ +D T+S+S + + ++ M P E E+DP +FSLS VELITEPNS +D WN
Sbjct: 1475 --VECNDLITVSDSTKLETSSTMQPKE-----EEDPFIFSLSRVELITEPNSGLDDEWNG 1527
Query: 1464 ---NSAPGPQKLPVRRQTKCEGDVGSGSVGNNVPNVDLSMSFDANNVMNPKEELSVPCVE 1520
PQKLP+RRQTK E D+ + S+ + + ++ P E S P E
Sbjct: 1528 AAAAGQAAPQKLPIRRQTKPEDDL------DGFLEPSFSIPHETDTLLKPVEG-SSPFSE 1580
Query: 1521 WDASGNGLEGEMLFDYDGLNYEDMEFEPQTYFSFSELLASDDGGQSDGVDASGVVFGNRE 1580
WD S +GL+ FD+ GLN+EDM+F PQTYFSF+ELLA DD + GVD SG G+
Sbjct: 1581 WDNSAHGLDEAATFDFAGLNFEDMDFGPQTYFSFTELLAPDDDVEFGGVDPSGDASGDLN 1640
Query: 1581 DLSCSIQQDGAPQQCGLGTSKDPSNCTVSTVNKMQCRICPDIEPAPNLSCQICGLVIHSQ 1640
+ + D G G +P+ VN C+IC + +P P+L CQ+CGL IHS
Sbjct: 1641 NSFSIVDNDIFNH--GSGEQHEPATSIPMVVN---CQICTNSDPVPDLLCQVCGLQIHSH 1695
Query: 1641 CSPWPWVESSYMEGSWKCGNCRDWR 1665
CSPW + ME W CG CR+W+
Sbjct: 1696 CSPWDDAALT-MEEQWSCGRCREWQ 1719
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564737|ref|XP_003550605.1| PREDICTED: uncharacterized protein LOC100794210 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356541977|ref|XP_003539448.1| PREDICTED: uncharacterized protein LOC100808614 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224104983|ref|XP_002313643.1| predicted protein [Populus trichocarpa] gi|222850051|gb|EEE87598.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359479395|ref|XP_002271257.2| PREDICTED: uncharacterized protein LOC100243147 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297734860|emb|CBI17094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297808265|ref|XP_002872016.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297317853|gb|EFH48275.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30688628|ref|NP_197668.2| PHD finger family protein [Arabidopsis thaliana] gi|332005688|gb|AED93071.1| PHD finger family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356544696|ref|XP_003540783.1| PREDICTED: uncharacterized protein LOC100808261 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356541435|ref|XP_003539182.1| PREDICTED: uncharacterized protein LOC100796377 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | ||||||
| TAIR|locus:2162509 | 1566 | AT5G22760 "AT5G22760" [Arabido | 0.512 | 0.545 | 0.516 | 0.0 | |
| UNIPROTKB|E7ETD6 | 2764 | BPTF "Nucleosome-remodeling fa | 0.097 | 0.058 | 0.258 | 8.8e-15 | |
| UNIPROTKB|Q12830 | 3046 | BPTF "Nucleosome-remodeling fa | 0.097 | 0.053 | 0.258 | 1.8e-14 | |
| FB|FBgn0000541 | 2669 | E(bx) "Enhancer of bithorax" [ | 0.031 | 0.019 | 0.415 | 2.7e-14 | |
| UNIPROTKB|F1LX76 | 2894 | F1LX76 "Uncharacterized protei | 0.097 | 0.055 | 0.266 | 1e-13 | |
| UNIPROTKB|F1M1V5 | 2952 | F1M1V5 "Uncharacterized protei | 0.097 | 0.054 | 0.266 | 1.2e-13 | |
| UNIPROTKB|F1M1V4 | 3013 | F1M1V4 "Uncharacterized protei | 0.097 | 0.053 | 0.266 | 1.4e-13 | |
| UNIPROTKB|F1PFZ4 | 2716 | BPTF "Uncharacterized protein" | 0.097 | 0.059 | 0.258 | 1.4e-13 | |
| UNIPROTKB|J9JHE8 | 2842 | BPTF "Uncharacterized protein" | 0.097 | 0.057 | 0.258 | 1.9e-13 | |
| UNIPROTKB|E1C5C8 | 2802 | BPTF "Uncharacterized protein" | 0.064 | 0.038 | 0.271 | 5.8e-13 |
| TAIR|locus:2162509 AT5G22760 "AT5G22760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2291 (811.5 bits), Expect = 0., Sum P(4) = 0.
Identities = 462/895 (51%), Positives = 592/895 (66%)
Query: 694 GSVFKPHSYINQYMHGEFXXXXXXKLAVLSSEESQASEMHKSGNTRKAMSGSISLQAKAF 753
G FKPHSYIN Y +GE LA+L SEE+ ++HK N +KA S +I LQ KAF
Sbjct: 626 GLSFKPHSYINHYTNGELAASAAATLAILMSEETHEPDLHKFSNAKKAASSNILLQMKAF 685
Query: 754 SSTASRFFWPCSERKLWEVPRERCSWCYSCKSPPSNRRGCMLNSAMTVATKSAMKILNGL 813
S AS FFWP ++K E+ RERC WC+SCK ++RRGCMLN+A+T ATKSAMKI +GL
Sbjct: 686 SIVASSFFWPSPDKK--EITRERCGWCHSCKLTSASRRGCMLNAAVTGATKSAMKIYSGL 743
Query: 814 LAPKTGEGNLPTIVTYIMYMEESLCGLISGPFRSVSYRKKWRKQVAEACTLNSIKALLLE 873
K GEG L I Y +Y+EESL GLI+GPF S S R +WRK++ EA T ++KALLLE
Sbjct: 744 FPLKNGEGVLSRIAAYALYLEESLRGLIAGPFLSESLRYQWRKKLEEASTCKAMKALLLE 803
Query: 874 LEENICHIALSGDWVKLMDDWLGDSSVIQSASCNFVTTQKRGLSGKRGRKHSVISEVTAD 933
LEENIC IALS DW+KLMDDWL + S+ QSA TQKR G+R +++ +E TA
Sbjct: 804 LEENICSIALSSDWLKLMDDWLIELSIFQSAPVTVGATQKRR-PGRRKQRNQ--AENTAQ 860
Query: 934 DCNDQSFSWWQGGKSTKLISKKAILPHTIIRNAARRGGLRKISGVNYT--AEMPKRSRQL 991
+D SF+WW+GGK +K+I KA+L I+ AA +GG +K NY + +PKRSR+
Sbjct: 861 GSDDDSFTWWRGGKLSKIILLKAVLSKPKIKKAAWQGGTKKFPEFNYGDGSYIPKRSRRS 920
Query: 992 VWRAAVERSKTVSQLALQVRYIDLHVRWSELVRPEQNLQDGKGPETEAFAFRNAIICDKK 1051
+W+AAVE SK +SQLALQVRY+D+++RWSELVRPEQN+QD KGPETEA FRNA IC KK
Sbjct: 921 IWKAAVESSKNISQLALQVRYLDMNIRWSELVRPEQNVQDVKGPETEATIFRNASICVKK 980
Query: 1052 IVENKIRYGVAFGIHRHLPSRVMKNIIDIELSQDGKEKYWFPETCLPLFLIKEYEERVDM 1111
I++NK+RYGV FG +HLPSRVMKN+I++E S+D EKYWF E +PL+LIKEYEE +
Sbjct: 981 IIDNKVRYGVVFGNQKHLPSRVMKNVIEVEKSEDRNEKYWFHEARVPLYLIKEYEESLHR 1040
Query: 1112 VI-APSSKKPSNELSEFQKKQLKASRKDLFSYLVCRRDKIEKCACASCQIDVLLGNAVKC 1170
V+ P KKPS ++S+ QK+QLKASR ++FSYL RRD EKC+CASC +DV L +++ C
Sbjct: 1041 VVHIPFIKKPSRKISKLQKRQLKASRANIFSYLASRRDNTEKCSCASCHLDVFLRDSITC 1100
Query: 1171 GTCQGYCHEGCTSSSMHMNSGVEPMIVCNRCYLPRALATSEIRSESPTSPLPLHRQEYHT 1230
TCQG+CH+ CT SS H +E ++ C RCYL RA + I PT+P L +
Sbjct: 1101 STCQGFCHKECTMSSQHTTGQLEILVTCKRCYLARARSQININHRQPTTPSVLINGQLQN 1160
Query: 1231 AVKVSKGTRPKGFNQALASIRTQESSES-KQTVSDSSTVTKTRNRTLSWGIIWRKKNIED 1289
A + T+ K NQ L S +T +++ KQ D + K++++TLSWG+IWRKKN+ D
Sbjct: 1161 AATSNTKTQIKRLNQQLPSSKTGDNASGVKQITPDFNLAPKSKHKTLSWGVIWRKKNLAD 1220
Query: 1290 AGADFRRANVLPRGKS-VAHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKL 1348
G FR NV+ G+S +L+PVC +CK PYN L YIHC +C W+H +AV+LEESK+
Sbjct: 1221 TGVSFRHENVMLAGRSDQPNLQPVCWICKLPYNPGLTYIHCTSCDMWYHIEAVKLEESKI 1280
Query: 1349 SDVVGFKCCRCRRIGGPECPYMDPELKEXXXXXXXXXXXXXXXXXXXLNAPKQGQGSMRV 1408
+VVGFKCCRCRRI P+CPYMDP+LKE K GQG+ +
Sbjct: 1281 PEVVGFKCCRCRRIRSPDCPYMDPKLKEQKQMKQVF-----------FRRQKHGQGNTGI 1329
Query: 1409 DSDDGTISESKEFKLTTPMYPMEEMFVPEDDPLLFSLSTVELITEPNSEVDCGWNNSA-- 1466
DSD +SE K+ +TP + E+ FVPEDDPLL S+S VE IT PNS +D WN
Sbjct: 1330 DSDSERMSEPKDSLPSTPSFLSEDTFVPEDDPLLVSVSKVEQIT-PNS-LDVEWNEDGCV 1387
Query: 1467 PGPQKLPVRRQTKCEXXXXXXXXXXXXXXXXLSMSFDANNVMNPKEELSVPCVEWDASGN 1526
PGPQKL VRR K E +M ++ V+ P+ E + P +EWDASGN
Sbjct: 1388 PGPQKLQVRRPVKREDTDGNNNLSYTE----FTMHPESMPVVKPEMEPTFPVMEWDASGN 1443
Query: 1527 GL---EGEMLFDYDGLNYEDMEFEPQTYFSFSELLASDDGGQSDGV----DASGV 1574
EGE++FDY EDMEFEPQTYFS +ELL +DD GQ DG DASG+
Sbjct: 1444 SNNMNEGELMFDY-----EDMEFEPQTYFSLTELLTTDDSGQCDGYGDDKDASGI 1493
|
|
| UNIPROTKB|E7ETD6 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q12830 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0000541 E(bx) "Enhancer of bithorax" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LX76 F1LX76 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M1V5 F1M1V5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M1V4 F1M1V4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PFZ4 BPTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9JHE8 BPTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5C8 BPTF "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1665 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-09 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 3e-09 | |
| cd11726 | 127 | cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha | 2e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 1e-04 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-04 | |
| cd11672 | 120 | cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD | 0.001 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 377 CRICGM---DGTLLCCDGCPSAYHTRCIG--VSKMYVPEGSWYCPEC 418
C +CG DG LL CDGC +H C+G + +PEG WYCPEC
Sbjct: 2 CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48
|
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1665 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 99.13 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 98.58 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 98.52 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 98.45 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.38 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.35 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 98.31 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.23 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.13 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.1 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 98.09 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 98.03 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.93 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.72 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 97.48 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.41 | |
| KOG1632 | 345 | consensus Uncharacterized PHD Zn-finger protein [G | 97.35 | |
| KOG1632 | 345 | consensus Uncharacterized PHD Zn-finger protein [G | 97.26 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.2 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 96.84 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 96.75 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 96.62 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.56 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 96.54 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 96.4 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 96.3 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 95.86 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 95.53 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 95.21 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 94.89 | |
| KOG2752 | 345 | consensus Uncharacterized conserved protein, conta | 94.22 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 93.08 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 93.0 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 92.65 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 92.48 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 92.1 | |
| KOG1844 | 508 | consensus PHD Zn-finger proteins [General function | 91.81 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 89.71 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 88.2 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 88.11 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 83.59 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 83.34 | |
| PF07227 | 446 | DUF1423: Protein of unknown function (DUF1423); In | 81.28 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 80.87 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-175 Score=1576.82 Aligned_cols=1328 Identities=38% Similarity=0.574 Sum_probs=1097.3
Q ss_pred CCCCCCCCCCCCcCCCCCCccCcCCCCCCccccccc-ccccceeecceehhccCC-ceEEEEEEEEecceEEEEecCCCc
Q 000325 1 MEAKVKRPRGRPRKRKRPEDEDVTDGAGGKKRVVAV-EAKPIALVGRYVLKEFES-GIFLGKIVYYESGLYRVDYEDGDC 78 (1665)
Q Consensus 1 me~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LvGr~V~k~f~~-~~~~GkV~~yd~g~Y~V~yEDGd~ 78 (1665)
||.+++|||||||||.|+|+.+. +.+++|+|+-.. .+.|+.|.|+|++|.+.+ ++|+||+++||+|+|||.|||||+
T Consensus 1 m~g~~arpRGRp~k~p~~e~~nr-~~~~~kkp~~~~e~~~p~s~l~~r~~~d~~d~~~~~~k~~s~d~~~~rv~~e~~~~ 79 (1414)
T KOG1473|consen 1 MEGKVARPRGRPRKRPRSEDGNR-SINRGKKPVEEVESAVPRSLLGKRYLKDGDDKKVFLGKIVSYDTGLYRVKYEDGDV 79 (1414)
T ss_pred CCCCCCCCCCCCCCCCCcccccc-hhhhccCccccccccCccccccccccCCccchhhhhcccccccCcceeEEeecccc
Confidence 99999999999999999999999 999999994322 345679999999999999 999999999999999999999999
Q ss_pred cccChHHHHHhhccCCCcchhhhHhhhhhhhhhhccccccccccccccCCCCcccccccccccccccccCcccccCCccc
Q 000325 79 EDLDSSELRQFLLNENDFDADLTRRRKKLDDWLVKRSLKNEKSNLEKKDGDAKSEVDRIEASTLSEVSCGLTVEDVGEQV 158 (1665)
Q Consensus 79 Edl~~~el~~~l~~~~~~~~~~~~R~~kld~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1665)
|+|+-..+++.++.++.+++..+-|+.+||+.....+....-...+.+..|.++... + .+.+-..+
T Consensus 80 ~~~~~s~v~~~~~s~s~~~eet~~rr~dl~d~~edk~d~~dd~e~~e~~~ed~~~~N--~------------~~~v~~se 145 (1414)
T KOG1473|consen 80 ESLEASTVRPLIISDSGKDEETRPRRKDLDDQEEDKDDKKDDSEEEEKDDEDPFMCN--E------------DSSVQESE 145 (1414)
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccccccccchhhcC--c------------hhhhhhhh
Confidence 999999999999999999999999999999999887755111111222223222211 0 11122334
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCch-----------HHHHHHH--HhhhhcCCCCch---hhh--
Q 000325 159 EGDMDSSSDSCEHVRETDAGLEAETPLLPPPQLPPSSGTI-----------ALMRVLR--RHLETLSSDGSE---LAS-- 220 (1665)
Q Consensus 159 ~~d~~sss~s~~~~~~~~~~~~~~~p~~ppleLP~SS~di-----------sl~r~LR--rhle~lS~~g~e---~As-- 220 (1665)
+++..++........+.++..+.+.|.+||||||+||||| |||++|| +|..||+||+|| +|+
T Consensus 146 ~~~n~t~~~~~~~~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~ 225 (1414)
T KOG1473|consen 146 SGLNYTDIGRPPRLDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALIS 225 (1414)
T ss_pred cccccCCCCCCCCCCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHh
Confidence 4555666666677777777788999999999999999999 9999999 699999999998 553
Q ss_pred ----------------------------------hhhhcccccccccccHHHHHHHHHhhcccccCCcccchhhhhhhcc
Q 000325 221 ----------------------------------NCLRCIDWSLLDTLTWPVYVVQYLTSMGYIKGTQWTGFYDEVSVRE 266 (1665)
Q Consensus 221 ----------------------------------~CLR~i~w~lLD~lTWP~~L~~Yl~s~G~~~~~~~k~~~~~ll~~e 266 (1665)
+|++||+|+|||+||||+|||+|+++||+..+.-|..|+..+...|
T Consensus 226 ~~~ssLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~e 305 (1414)
T KOG1473|consen 226 HEQSSLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDE 305 (1414)
T ss_pred cCchhHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeehhccccHHHHHHHHHHhccccCcchhhhhcccccccc
Confidence 5677999999999999999999999999999999999988888899
Q ss_pred ccccchhhHHHHHHHHhhhhcchHHHHHHHhcccccccC----CCCCcc-ccccccccccc------cCCCCCCCcccch
Q 000325 267 YYSLSAGRKLMILQILCDDVLDSEELRAEIDAREESEVG----LDPDAA-SYGSEIARRRV------HPRFSKTPDCKNR 335 (1665)
Q Consensus 267 Y~~~pV~~KL~ILq~LcD~~l~s~efR~E~dmrEede~~----ld~~n~-~~l~E~G~Rr~------h~R~~k~sa~k~~ 335 (1665)
||+.||+.||+|||||||+||+++.+|.||+.+++.+.+ ++.+.. .++.|+++|++ |||+.+.++....
T Consensus 306 Y~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~ 385 (1414)
T KOG1473|consen 306 YPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWEC 385 (1414)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchh
Confidence 999999999999999999999999999999998887766 555544 77899999999 8999888776654
Q ss_pred hhhhhhccccccCC---ccCCCCC-CCCCCCCCCCCCcccccccccccccccCccccCCC-CCccccc-cccc--cccCC
Q 000325 336 EAVEFNAENDRMKT---SCKAKPL-GFKGTEMDAPGVDVDGNGDECRICGMDGTLLCCDG-CPSAYHT-RCIG--VSKMY 407 (1665)
Q Consensus 336 ~~~E~~ees~~~s~---~~~s~~s-r~~~~e~~~~~~e~d~ndd~C~VC~~gG~LLcCD~-Cp~afHl-~CL~--PpL~~ 407 (1665)
+.-.+.--....+. ..+..+. |...-..+...-.-..+.+.|.||+..+.+|||++ |+.+||+ .|++ ..-+.
T Consensus 386 evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~ 465 (1414)
T KOG1473|consen 386 EVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMY 465 (1414)
T ss_pred hhhhhhccCcccccccChhhcccceeccCCCcCccccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHh
Confidence 44332210011111 1111111 22111112222223456678999999999999998 9999999 9999 44568
Q ss_pred CCCCCcccccCcccccCCcccccCccccccccccchhhhHHHh-hcccceeeccCCCchhhccccCCCChHHHHHHHhcc
Q 000325 408 VPEGSWYCPECAINKVGPIVTIGTSLRGAELFGIDLYERVFLG-TCNHLLVLNASSNTEQYIRYYNPIDIPKVLQALLSS 486 (1665)
Q Consensus 408 vPeGdW~Cp~C~~~~~~p~~E~g~~~rg~EllG~D~cgR~Yh~-kCerLll~~~s~Dse~~~~YYs~~DL~~Vl~vLy~s 486 (1665)
+++|-|+|+.|...+++++.+..+..|++-.||.|+++|.|.. .|.-+|+.......+.-..||...++.++..++-.+
T Consensus 466 L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~k~v~~~~S~ 545 (1414)
T KOG1473|consen 466 LCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDIDKVVLVLISA 545 (1414)
T ss_pred hccchhhhHHHHHHhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchHhhhhhhhhc
Confidence 9999999999999999999999888898888999999999986 466555443222223457888888888999999999
Q ss_pred ccchhhHhHHHHHHHHHhcCccccc-cCCCCcccccccccccccccCCCCCCCccccccccceecCCCCCCCCCCCcccc
Q 000325 487 VQHVSLYLGICKAILHYWDIPESVV-PFMGMETNTINAKADEKFCSQSHHPPIKESQRITDMVEAGNASSNNGSNVDNVA 565 (1665)
Q Consensus 487 Dih~~~y~eI~~~I~~y~~~p~NL~-nl~~~~~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1665)
..|...|.+||++|.+||+.|+--. -++.. .+|-.|+ +...++|-..++.+.+-...
T Consensus 546 s~~~eE~~e~ck~is~~~d~p~~n~~~~~e~-------~~dqtf~---------------~y~ys~n~vse~~~~d~e~~ 603 (1414)
T KOG1473|consen 546 SAHQEEYVEICKAISQYWDLPEGNLWRLREE-------GNDQTFM---------------KYYYSGNEVSEIFLTDSENA 603 (1414)
T ss_pred ccchHHHHHHHHHHhhcccccccchhhhhhc-------ccccchh---------------hhcccCCchhhccCCchhhh
Confidence 9999999999999999999998332 22222 2222220 00112222222222220000
Q ss_pred ccccccccccccCCCCcccccccchhhhhccchhhccCCCCCccccccccccCCccccCCCCCccccccccccccccccc
Q 000325 566 VSSLHTFMNTMSQTGVPFVQSNDITVTEKLQDCLVLNGKLPGHVKMESAMSTGSVSQQADPSDVTYQSLVDRSSAIDFMT 645 (1665)
Q Consensus 566 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1665)
..+. +...+|+....+. +-..+|.|- .+
T Consensus 604 dkk~------------------------------~~~tkf~l~~nsd--~~~~g~~~t-------------~g------- 631 (1414)
T KOG1473|consen 604 DKKS------------------------------HMQTKFALITNSD--GVTAGNVTT-------------YG------- 631 (1414)
T ss_pred cccc------------------------------cccceeccccccc--ceecccccc-------------cc-------
Confidence 0011 1122232221100 000011000 00
Q ss_pred ccccccCCCCCCCCccCCCCCcccccccccCCCccccccccCCcccccccccCccchhh----ccchh-hHHHHHHHHHh
Q 000325 646 CTSQISNDGNSGHASSCLSPNISFLSKERNHGGLLGVGTNYANKCAFMGSVFKPHSYIN----QYMHG-EFAAAAAAKLA 720 (1665)
Q Consensus 646 ~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~n~~~~~~~~~~~~~p~~YiN----~Y~~g-~~aasaAa~La 720 (1665)
++ -...+....-.+.+.+|+|.+||| +|..| +.|+|||+.+|
T Consensus 632 -----------t~----------------------~~~~~~~~~t~~~~lSniP~s~~n~~w~~~tkg~~lavs~A~~~~ 678 (1414)
T KOG1473|consen 632 -----------TG----------------------SQHKKLIARTLQQGLSNIPISYNNRKWPVYTKGFELAVSAAADLA 678 (1414)
T ss_pred -----------ch----------------------hhcchHHHhhhhhhhccCchHhhhccchhhccchhhhhhccchHH
Confidence 00 011334444567789999999999 99999 99999999999
Q ss_pred hhccccccccccccccCcccccchhhHHHHHHhhhccccccccccccccccccCccccccccccCCCCCCCCceeehhhh
Q 000325 721 VLSSEESQASEMHKSGNTRKAMSGSISLQAKAFSSTASRFFWPCSERKLWEVPRERCSWCYSCKSPPSNRRGCMLNSAMT 800 (1665)
Q Consensus 721 ~~sS~e~~~~~~~~s~n~~k~~~~~~~~Q~Kafs~~~~~F~Wps~ekk~~ev~rerCGWC~sCk~s~~~~~~C~ln~a~~ 800 (1665)
++++ |..+.+.++-.|..|+++.++..|+|+||.+|++||||+..+| +..|||||||++|+....+.++||+|.+.+
T Consensus 679 el~s-~t~~~d~s~~~~~~~~~ssn~L~qtklesitaa~f~~~~~~~K--ri~rer~~~~~~~~l~~~s~k~~~~~~~~~ 755 (1414)
T KOG1473|consen 679 ELSS-ETLEPDLSKRSNAFKAASSNILGQTKLESITAAQFFWPSPDKK--RITRERCGWCESCRLTFASRKGTMLLAAVI 755 (1414)
T ss_pred HHHH-hhcccchhhhhhhhccchhhhhcchhheeeehhhhccCCcccc--cccccccchhhhcceeeehhccccchhhcc
Confidence 9999 8999999999999999999999999999999999999999999 999999999999999888999999999999
Q ss_pred hhhhhhHHHhcCcccccCCCCChHHHHHHHHhhhhhccccccccCCChhHHHHHHHHHHhhcchhhHHHHHHHhhhcccc
Q 000325 801 VATKSAMKILNGLLAPKTGEGNLPTIVTYIMYMEESLCGLISGPFRSVSYRKKWRKQVAEACTLNSIKALLLELEENICH 880 (1665)
Q Consensus 801 ~a~kg~~~~~~gl~~~k~~~~hl~~i~~yil~mEe~L~GLl~Gp~~~~~~r~~Wrk~v~~As~~~~ik~lLL~LEsnir~ 880 (1665)
.|+||+|++.+||.|.||+++.|.+|++|++++||+++|++||||+..+-|++||+.|+. .+.++++||+||+-
T Consensus 756 gaqKGa~~r~~G~~~l~n~~~vlS~~~~~~~~~~es~~~v~v~~~~~Esnr~~~r~~L~~------r~~~~~q~ee~i~~ 829 (1414)
T KOG1473|consen 756 GAQKGAMYRNSGLFPLKNWEWVLSSIAAYWLALEESPRGVIVGEFKSESNRKQERKELLV------RRSGGKQLEENICS 829 (1414)
T ss_pred ccccccceeeeccccccChhHHHHHHHHHHHhhhccccceeecccccccchhhHHHHhhh------hhhhhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999988 49999999999999
Q ss_pred eeeccchhhhhhccc-ccccccccccccccccccccCCCCCCCcccCccccccCCCCCCceeeecCCcchhhhhhcccCh
Q 000325 881 IALSGDWVKLMDDWL-GDSSVIQSASCNFVTTQKRGLSGKRGRKHSVISEVTADDCNDQSFSWWQGGKSTKLISKKAILP 959 (1665)
Q Consensus 881 iA~s~dW~K~~D~~~-v~~s~~~~~~~~~~~~qk~g~~grr~rk~~~~~e~~~~~~~~~~~~WwrGG~lsr~if~~~~Lp 959 (1665)
+|++-+|.|+||+|. ++.|..++..-+.++.|+|++|+++ +..+ -|.++.+....+|.|||||+ |+.|+|+|||-
T Consensus 830 ~~~~~y~~~~~~n~~rie~s~~~~ng~~v~akQ~r~pgr~~-~s~~--~ek~A~~s~ld~f~~~Rggk-s~vvl~kavL~ 905 (1414)
T KOG1473|consen 830 GALSCYWPKQMDNWLRIEHSIFQSNGVTVGAKQARDPGRTK-QSLQ--AEKTAPKSDLDSFTWWRGGK-SKVVLQKAVLS 905 (1414)
T ss_pred ccccccchhhccCceeeeechhccCceeechhhhcCCcchh-hhcc--hhhccccccccchhhhhcCc-ceeeehhhhcc
Confidence 999999999999999 9999999999999999999995544 3333 38899998899999999999 99999999999
Q ss_pred HHHHHHHHHhcCcccccccccC--CCccccchhhhhhhhhhcccchhHHHHHHhhhcccccccccCCCcccccCCCCchh
Q 000325 960 HTIIRNAARRGGLRKISGVNYT--AEMPKRSRQLVWRAAVERSKTVSQLALQVRYIDLHVRWSELVRPEQNLQDGKGPET 1037 (1665)
Q Consensus 960 ~s~v~kAarqgG~~ki~gi~Y~--se~~rRsr~~~WraaVe~s~~~sqLalqvR~Ld~~irW~el~~~~~~~~~~K~~~~ 1037 (1665)
++.++|||.|+|.+++|+..|. +.+|||+++..|.+||+-++|++|||||| .|+.+|+|++++
T Consensus 906 ~~~mk~~v~~~g~ta~~k~nfl~~~y~p~~s~~s~wk~av~n~enlh~LAlQ~---------------~q~v~d~~s~~~ 970 (1414)
T KOG1473|consen 906 QSIMKKLVWQQGFTAGPKSNFLDWSYIPRRSRRSCWKAAVENSENLHQLALQL---------------RQNVQDVKSPET 970 (1414)
T ss_pred hHHHHHHhhccccccCCcccccccccccchhhhhhhhhhhcChhhHHHHHHHH---------------HHHHhccCCchh
Confidence 9999999999999999999999 88999999999999999999999999998 689999999999
Q ss_pred hhhhcccceeeeccccccceEEEEecCCcccCChhhhhhhhhhccccCCCCccccccCCchhHHHHHHHhhccccccCCC
Q 000325 1038 EAFAFRNAIICDKKIVENKIRYGVAFGIHRHLPSRVMKNIIDIELSQDGKEKYWFPETCLPLFLIKEYEERVDMVIAPSS 1117 (1665)
Q Consensus 1038 ~~~~fr~~~i~~k~~~~~~~~Y~~~fg~~k~lp~~v~kn~~~~E~~~~~~~k~w~~e~~vPL~LlkefEek~~~~~~~s~ 1117 (1665)
.++.||||-||.|++.+++.+|+.-|++ +++||.|.+ ||+.|.-|+| .||+.+
T Consensus 971 r~ai~r~~~ic~~~l~d~~~~~~~~~~s------~~~~~~~~~---------~~~~~~~~sl----~~~~fr-------- 1023 (1414)
T KOG1473|consen 971 RRAIFRNAEICIKKLYDNKEEEGESWLS------SEFSHVISS---------RPQRHEFVSL----GYEKFR-------- 1023 (1414)
T ss_pred hHHHhhhhhhhccccccCCcccccchhh------hhhhhhhhc---------ccccCceeec----cchhhh--------
Confidence 9999999999999999999999999999 889999887 9999999999 388853
Q ss_pred CCCCchhhHHHHHhhcccccchhhhhhhcccccccccccccccccccCCccccccccccccccccccCcccCCCCcccee
Q 000325 1118 KKPSNELSEFQKKQLKASRKDLFSYLVCRRDKIEKCACASCQIDVLLGNAVKCGTCQGYCHEGCTSSSMHMNSGVEPMIV 1197 (1665)
Q Consensus 1118 ~~~s~~~~~~~~~~~k~~~~~~FsyL~~k~~~le~~~C~~C~kDV~~rdaV~C~~Cqg~fHk~C~~~S~~~~g~~e~~yt 1197 (1665)
.++.-..+++++.++|.+...+|.|+-.+- + .
T Consensus 1024 ~~~~~r~~~~q~~~~~~~~~~v~~~~~~~~--------------------------------------~------~---- 1055 (1414)
T KOG1473|consen 1024 SLDNRRATAIQREWLKGSTANVFEIKDYWP--------------------------------------P------S---- 1055 (1414)
T ss_pred cchhhhhHHHHhhhhcccccceeeeeccCC--------------------------------------c------h----
Confidence 244556789999999999999999987440 0 0
Q ss_pred cccccCcccccccccccCCCCCCCCcccccccccccccccCCCCCCCccccc-ccccCCccccccCCCCccccccccccc
Q 000325 1198 CNRCYLPRALATSEIRSESPTSPLPLHRQEYHTAVKVSKGTRPKGFNQALAS-IRTQESSESKQTVSDSSTVTKTRNRTL 1276 (1665)
Q Consensus 1198 C~rCl~~k~~~i~~~~~~~~~spl~~~~~~~~~avtapK~~r~K~~kqPl~s-v~~k~~sG~Kk~~~~k~~~~Kkkrk~~ 1276 (1665)
+.+++ ..+-+.+|+|+-+|..... +.+.++.
T Consensus 1056 -----------------------------------------------s~~~s~~~~~~~~gvkq~tpd~n~~-~~~~~~~ 1087 (1414)
T KOG1473|consen 1056 -----------------------------------------------QQLPSEKNNVNYSGVKQRTPDGNER-KSKKKTL 1087 (1414)
T ss_pred -----------------------------------------------hhCcccccCCCccceeeecCCcchh-hhccCCc
Confidence 00111 1223446788888888877 8888999
Q ss_pred ceeeeeeccCccccccchhhcccCCCCCCC-CCCCCeeeccCCCCCCCcceEecCCCCccccccccccCccccCCcccee
Q 000325 1277 SWGIIWRKKNIEDAGADFRRANVLPRGKSV-AHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFK 1355 (1665)
Q Consensus 1277 s~Gl~wKKk~~dd~g~~Fr~env~l~s~s~-~~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgLte~~a~~i~~Y~ 1355 (1665)
++|++|.+++-.+.+..|+..|+++.+.+. +...++|-+|..||+++..+|.|-.|..|||++.|.+..........|.
T Consensus 1088 s~~v~~~~~~~a~t~~~~~~qnii~ag~~~kp~~~p~~~i~~~p~~pg~~~i~~~~~~~~~~~~~v~ln~s~~p~~~~~k 1167 (1414)
T KOG1473|consen 1088 SSGVIWRKKNYADTGVPFRHQNIILAGRSDKPTLSPVCFICTLPYNPGLTYIHCTVCMTWGHKEAVKLNSSPIPEVVGFK 1167 (1414)
T ss_pred cccccccccccccCCCCcchhhHHhccCCCCCCCCccccceeeccCCCCCcceEEEeeccCcceeEecCCCcchHHhhhh
Confidence 999999999999999999999999888766 8889999999999999999999999999999999999999998889999
Q ss_pred ecCccccCCCCCCCCCcchhhhhhhhhHHHHHHHHhhhhccCCCCCCCCCCCccCCCCCccccccccccCCCCCCcccCC
Q 000325 1356 CCRCRRIGGPECPYMDPELKEQKRKKDQKRKKDQKRKKQQLNAPKQGQGSMRVDSDDGTISESKEFKLTTPMYPMEEMFV 1435 (1665)
Q Consensus 1356 Cp~Crrk~gP~cP~~~~~~k~q~~~k~q~rrk~~~r~~~q~na~~~~~~~~g~~s~~g~~~e~~~~~~~~~~~~~~~~~~ 1435 (1665)
|.+|++++.|.|||++++++.|.++++.--+. . ...|++.|.++|+..+.|++++++++|-++++++|+
T Consensus 1168 ~~~~~ri~~P~~~~~~~~~~~~~~~kr~~~~~---q--------~~~q~~~~~~s~s~~~~e~~~~~~a~p~~~~d~~~i 1236 (1414)
T KOG1473|consen 1168 CCQCRRIRSPDCPYMDPKLKEQKQTKRGGFRN---Q--------KHQQGNQGRDSDSERMSESKDSLPATPDNDGDDPFI 1236 (1414)
T ss_pred HHhhhccCCCCCCcCCchhhHHHhhhhhhhHH---H--------HHhhhccccccccccccccccccccCCCCCCCCccc
Confidence 99999999999999999999999888654432 1 334566699999999999999999999999999999
Q ss_pred CCCCCcceeccceeecCCCCCccccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcccccCcCcCCCCCCCcCCc
Q 000325 1436 PEDDPLLFSLSTVELITEPNSEVDCGWNNSAPGPQKLPVRRQTKCEGDVGSGSVGNNVPNVDLSMSFDANNVMNPKEELS 1515 (1665)
Q Consensus 1436 ~~~dpll~s~~~ve~i~e~~~~~d~~~~~~~pg~~kl~vrr~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1515 (1665)
+++||+|++.++|++||+...++||......||||||+|||++|+++.+.+ ++.+-..|.|+.+-+
T Consensus 1237 p~~dp~l~~~~k~~q~~p~sr~v~~~~~~~~~~~q~~~v~~~i~~~~sd~~--------------~p~~~~iv~p~~~~a 1302 (1414)
T KOG1473|consen 1237 PEDDPLLVSVSKVQQITPQSRDVEWTPAQMIPGPQKLGVRRVVKREDSDGQ--------------FPEGTPIVKPEREPA 1302 (1414)
T ss_pred cCCCchhhhHHHHHHhCccccchhccccCccCCCcccccccceeehhcccc--------------CCCCccccCccccch
Confidence 999999999999999999988888877777999999999999999988732 233334488885559
Q ss_pred ccccccccCCCCCcccccccCCCCCccCCccccccceecccccccCCCCCCCccccCCccccccCCcccccccCCCcccc
Q 000325 1516 VPCVEWDASGNGLEGEMLFDYDGLNYEDMEFEPQTYFSFSELLASDDGGQSDGVDASGVVFGNREDLSCSIQQDGAPQQC 1595 (1665)
Q Consensus 1516 ~~~~~~d~~~~~~~~~~~~d~~~~~~~~~e~ep~tyfs~tell~~dd~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1595 (1665)
+|+++||++ ++++|| |+||||||||||++||||..||.| +|+.+++++.-++++ -..-++|
T Consensus 1303 ~~~~~~~~s-----~~~v~~-----~~~~e~~pq~~~~~~~~~~~~~sg--a~y~dd~~~~~pg~q-------~~~~~q~ 1363 (1414)
T KOG1473|consen 1303 VPVREWDAS-----GELVFD-----YEDMEFEPQTYFSLTELLTVDDSG--AGYMDDQDTPNPGQQ-------VRYVEQC 1363 (1414)
T ss_pred hhhhhhhcC-----cceeec-----hhccCcchHHHHHHHhhhhhhccC--ccccccCCCCCCCCC-------cchHhhc
Confidence 999999999 699999 999999999999999999999998 778888887744443 2234777
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCccceeccceEeccCCCCCcccccCCCCCccccccccC
Q 000325 1596 GLGTSKDPSNCTVSTVNKMQCRICPDIEPAPNLSCQICGLVIHSQCSPWPWVESSYMEGSWKCGNCRDW 1664 (1665)
Q Consensus 1596 ~~~~s~~~~~~~~~~~~~~~c~~c~~~~p~pdl~c~~cg~~ih~~csp~~w~e~~~~~~~w~cg~crew 1664 (1665)
|... .+|+.|++++|+|||.|++|++.||+| +| | +...+++|+||.||.|
T Consensus 1364 g~n~--------------~P~~~~~~~~p~~~l~~~~~~~q~h~~-s~--~--s~~~g~~~~~g~~rv~ 1413 (1414)
T KOG1473|consen 1364 GPNV--------------NPCQVCSRGGPGPDLMCMVCQQQIHSH-SP--W--SDATGFSWSCGTCRVP 1413 (1414)
T ss_pred CCCc--------------CcchhhhccCccchhHHHHHHHHhcCC-CC--c--ccCcccceeeeeeecc
Confidence 7433 449999999999999999999999999 99 7 7789999999999998
|
|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG1844 consensus PHD Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1665 | ||||
| 1wep_A | 79 | Solution Structure Of Phd Domain In Phf8 Length = 7 | 2e-07 | ||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 1e-06 | ||
| 3kv4_A | 447 | Structure Of Phf8 In Complex With Histone H3 Length | 2e-06 | ||
| 1mm3_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-06 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 4e-06 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 4e-06 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 4e-05 | ||
| 3kv5_D | 488 | Structure Of Kiaa1718, Human Jumonji Demethylase, I | 9e-05 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 2e-04 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 7e-04 |
| >pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8 Length = 79 | Back alignment and structure |
|
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
| >pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3 Length = 447 | Back alignment and structure |
| >pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex With N-Oxalylglycine Length = 488 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-21
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 368 VDVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKV 423
+ D + + CR+C G LLCCD CPS+YH C+ +P G W CP C +
Sbjct: 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1665 | ||||
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 7e-16 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 4e-14 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 6e-12 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 8e-12 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 5e-10 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 1e-11 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 9e-06 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 9e-10 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 2e-05 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-09 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 3e-06 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 2e-07 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 6e-06 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 3e-05 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 9e-05 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 0.002 |
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Mi2-beta (CHD4) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (174), Expect = 7e-16
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 371 DGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPEC 418
D + + CR+C G LLCCD CPS+YH C+ +P G W CP C
Sbjct: 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1665 | |||
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 99.38 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 98.95 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.89 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.89 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.84 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.8 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 98.79 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 98.74 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 98.54 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.36 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.26 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 97.9 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.86 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.81 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.66 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 97.64 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.42 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.3 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.11 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.77 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.63 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 96.33 |
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: PHD finger protein 8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.1e-13 Score=110.81 Aligned_cols=65 Identities=42% Similarity=0.822 Sum_probs=58.0
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99989999701015889899966286589986002544535733668964056068543488888
Q 000325 1303 GKSVAHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPEC 1367 (1665)
Q Consensus 1303 s~~~~~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~c 1367 (1665)
+++.....++||+|+++++++.+||+||.|+.|||..|||++..++...+.|+|+.|+...+|..
T Consensus 4 gss~~~~~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp~~ 68 (79)
T d1wepa_ 4 GSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred CCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 76788758868489896599986888998997396034174510278787789956738768764
|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|