Citrus Sinensis ID: 000368

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610-

MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

cccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHEEEcccccccccccccccHHHHHccHHHHcccHHHHHHHHccccccccccccccccccccccc

ccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHEEEcccccccccccccccEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcHcHHHHccHHHHHHccHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHcEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHcHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccHHHHHccHHHHHccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccccc

mdqnqsqrssigaatassassrayqfhPARAAIIDLFNLylgrssrqkqddsirdppnktQKRVLALnrelpprneqFLIDFEQlqsqfpdqdqlrSVTESVLISMVVQCCSHVPRAEFILFALRSLCSigyinwdtfLPSLLSSvssaemsagqgsqampavsatslqqsgmlptssgipnssnyqssnpasplpsvhgigspaqsaiETSVcaamspvkssdvsctgqqfttrvnsSVRDNAISSLRQLCCKIILTGLefslkpvthADIFYHMLNWLVTWDqkqqgidesdgksWRLDKALIEWLHSCLDVIWLlvdedrcrvpFYELLRTGLQfienipddEALFTLILEIHRRRDMMAMHMQMLDqhlhcptfgthrilsqttpnisveaagnlryspitypsvlgeplhgedlatsiqrgSLDWERAMRCIRHAiratpspdwwKRVLLVapcyrnpaqgptpgavftYDMISEAVIDRIVELLKLTnsevncwhdwlIFSDVFFFLVKSGCIDFVDFVDKLVSRlqdgdnhilRTNHVTWLLAQIIRVELVMGalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntsTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMgpllprlvNAHTLFNKTLALLLNTMgdvygkntlppapveasEIADLIDFLHHVVHyegqggpvqasskprpevLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

mdqnqsqrssigaatassassrAYQFHPARAAIIDLFNLYLGRSSrqkqddsirdppnktqKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLqfienipddeALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHairatpspdwwKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMgalnsdsrkvETTRKILSfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQggpvqasskprPEVLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

MDQNQSQRssigaatassassraYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFlpsllssvssAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

***********************YQFHPARAAIIDLFNLYLG***********************************FLIDFEQ**********LRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL****************************************************************************************FTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD***VETTRKILSFHR***C******QSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG**********************************************************

****************************ARAAIIDLFNLY************************************QFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS************************************************************************************************DNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQ*****************ALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAP*************VFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLN****************QIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP******N*RLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF*GQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ*****************ETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQA*QQA**TV***C***L***ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR*HSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLR****************VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG***************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV****KPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAAT*********

**********************AYQFHPARAAIIDLFNLYLGR***************KTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************SLQQSGMLPTSSGIP****************VHGIGSPAQSAIETSV***************GQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQG*********RPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

************************QFHPARAAIIDLFNLYLGRS***********PP**TQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEM***************************************************************************************SVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG*****GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSP**************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKM*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1611	2.2.26 [Sep-21-2011]
F4I4P3		1615	Mediator of RNA polymeras	yes	no	0.977	0.974	0.734	0.0
Q9W1X7		1439	Mediator of RNA polymeras	yes	no	0.350	0.391	0.212	2e-12
Q55BN0		1662	Putative mediator of RNA	yes	no	0.252	0.244	0.220	2e-10
Q16HH9		1409	Mediator of RNA polymeras	N/A	no	0.345	0.394	0.207	9e-09
Q5RIW8		1376	Mediator of RNA polymeras	yes	no	0.458	0.536	0.206	3e-08
Q5EB59		1367	Mediator of RNA polymeras	yes	no	0.453	0.534	0.201	5e-08
Q9ULK4		1368	Mediator of RNA polymeras	yes	no	0.462	0.544	0.2	2e-07
Q80YQ2		1367	Mediator of RNA polymeras	yes	no	0.449	0.529	0.200	3e-07
Q6P423		1369	Mediator of RNA polymeras	N/A	no	0.366	0.431	0.209	3e-05
Q60UZ5		1589	Mediator of RNA polymeras	N/A	no	0.173	0.175	0.218	5e-05

>sp\|F4I4P3\|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1	Back alignment and function desciption

 Score = 2454 bits (6359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1198/1630 (73%), Positives = 1373/1630 (84%), Gaps = 56/1630 (3%)

Query: 4    NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
            +QSQR+      A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct: 2    DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57

Query: 64   VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
            V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct: 58   VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117

Query: 124  LRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
            LR+LC I YINWDTFLPSLLSSVS+AE S  QG QA  A + +S   S           S
Sbjct: 118  LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS----------QS 167

Query: 184  SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVNSSV 240
                S NP S LPS HGIGSP+ S ++       S      ++  GQ   +   R +  +
Sbjct: 168  VVPVSVNPTSLLPSAHGIGSPSASEVK-------SVENGQQIARAGQIVRENAMRNSQRI 220

Query: 241  RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRL 300
            R  A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKSWR 
Sbjct: 221  RAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRS 280

Query: 301  DKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRD 360
            +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD
Sbjct: 281  EKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRD 340

Query: 361  MMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLA 420
             MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GEDLA
Sbjct: 341  AMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLA 400

Query: 421  TSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMIS 479
             SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT DMI 
Sbjct: 401  MSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMIC 460

Query: 480  EAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCID 520
            EA+IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSGC D
Sbjct: 461  EAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTD 520

Query: 521  FVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHR 580
            FVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHR
Sbjct: 521  FVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHR 580

Query: 581  EDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDR 640
            EDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SKG+R
Sbjct: 581  EDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGER 638

Query: 641  MMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREV 700
            MMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ +EV
Sbjct: 639  MMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEV 695

Query: 701  NPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSH 760
             PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS FS 
Sbjct: 696  TPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQ 755

Query: 761  LAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVL 820
            LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ 
Sbjct: 756  LAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIF 815

Query: 821  RLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYL 880
            RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YL
Sbjct: 816  RLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYL 875

Query: 881  QTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLL 940
            QTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLL
Sbjct: 876  QTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLL 935

Query: 941  SPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNI 1000
            SPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NI
Sbjct: 936  SPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANI 995

Query: 1001 YTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA 1060
            YT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE+LPLDI LLALIDRDDDPHA
Sbjct: 996  YTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHA 1055

Query: 1061 LRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFD 1120
            L I ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFD
Sbjct: 1056 LIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFD 1115

Query: 1121 DIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG 1180
            DIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGHLPG
Sbjct: 1116 DIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPG 1175

Query: 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKS 1240
            KL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L+ +S  
Sbjct: 1176 KLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNC 1235

Query: 1241 -------GSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293
                      +++S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIE
Sbjct: 1236 SSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIE 1295

Query: 1294 ILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGA 1353
            ILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ A
Sbjct: 1296 ILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSA 1355

Query: 1354 SRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKES 1413
            SRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+
Sbjct: 1356 SRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRET 1415

Query: 1414 WWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHV 1473
            WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+GT+ 
Sbjct: 1416 WWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNA 1475

Query: 1474 IIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPV 1533
            II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK     APV
Sbjct: 1476 IITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPV 1535

Query: 1534 EASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPD 1593
            EAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HLK +
Sbjct: 1536 EASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTN 1595

Query: 1594 VNSSIYAATH 1603
             NSSIYAA H
Sbjct: 1596 PNSSIYAAAH 1605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9W1X7\|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1	Back alignment and function description

>sp\|Q55BN0\|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23 OS=Dictyostelium discoideum GN=med23 PE=3 SV=1	Back alignment and function description

>sp\|Q16HH9\|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1	Back alignment and function description

>sp\|Q5RIW8\|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2	Back alignment and function description

>sp\|Q5EB59\|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULK4\|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2	Back alignment and function description

>sp\|Q80YQ2\|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2	Back alignment and function description

>sp\|Q6P423\|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1	Back alignment and function description

>sp\|Q60UZ5\|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1611
255586806		1613	conserved hypothetical protein [Ricinus	0.995	0.994	0.843	0.0
356530772		1615	PREDICTED: uncharacterized protein LOC10	0.997	0.995	0.802	0.0
359472598		1663	PREDICTED: uncharacterized protein LOC10	0.960	0.930	0.822	0.0
297845394		1637	hypothetical protein ARALYDRAFT_472581 [	0.985	0.969	0.738	0.0
334182788		1592	uncharacterized protein [Arabidopsis tha	0.974	0.986	0.741	0.0
15220680		1615	uncharacterized protein [Arabidopsis tha	0.977	0.974	0.734	0.0
297737648		1550	unnamed protein product [Vitis vinifera]	0.927	0.963	0.749	0.0
9295691		1583	F26F24.8 [Arabidopsis thaliana]	0.962	0.979	0.723	0.0
115448499		1620	Os02g0732700 [Oryza sativa Japonica Grou	0.991	0.985	0.677	0.0
242062622		1613	hypothetical protein SORBIDRAFT_04g02884	0.990	0.989	0.676	0.0

>gi\|255586806\|ref\|XP_002534017.1\| conserved hypothetical protein [Ricinus communis] gi\|223525976\|gb\|EEF28365.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2746 bits (7117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1367/1620 (84%), Positives = 1479/1620 (91%), Gaps = 16/1620 (0%)

Query: 1    MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKT 60
            MDQNQ    SI A TA+S   R YQF PARAAIIDLFNLYLGRSSRQK DDS R+PPNKT
Sbjct: 1    MDQNQR---SIAATTAAS---RGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPPNKT 54

Query: 61   QKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFI 120
            QKRVLALNRELPPRNEQFLI+FEQLQSQFPDQDQLRSVTESVLIS+V+QCC+H PRAEF+
Sbjct: 55   QKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFL 114

Query: 121  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGI 180
            LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQ  Q + A+S+ +  Q+ +LP+SS I
Sbjct: 115  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAI 174

Query: 181  PNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSV 240
            PNSSN+Q SNP SPL SVHGIGSP QSAIE S+ A +SPVKSSD+S  GQ  T+RVN S 
Sbjct: 175  PNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSS 234

Query: 241  RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDG-KSWR 299
            RDNAI+SLRQLCCKIILTGLEF+LKP TH++IF+HMLNWLV WDQ+Q G+DESD  +SWR
Sbjct: 235  RDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWLVNWDQRQHGVDESDSVRSWR 294

Query: 300  LDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRR 359
             +KALIEWL SCLDVIWLLVDE++CRVPFYELLR+GLQFIENIPDDEALFTLILEIHRRR
Sbjct: 295  PEKALIEWLRSCLDVIWLLVDENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRR 354

Query: 360  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDL 419
            DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA NLRYSPITYPSVLGEPLHGEDL
Sbjct: 355  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLGEPLHGEDL 414

Query: 420  ATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMIS 479
            A SIQRGSLDWERA+RCIRHA+R TPSPDWWKRVLLVAP YRNPA GPTPGAVF   MI 
Sbjct: 415  ANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPSYRNPAHGPTPGAVFVSSMIC 474

Query: 480  EAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHI 539
            EA IDRIVELLKLTNSEVNCW +WL+FSD+ FFL+KSGCIDFVDFVDKLV+RL +GD HI
Sbjct: 475  EATIDRIVELLKLTNSEVNCWQEWLVFSDILFFLMKSGCIDFVDFVDKLVARLTEGDQHI 534

Query: 540  LRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFIS 599
            LRTNH+TWLLAQIIRVE+V+ AL +D+RKVETTRKI+SFHREDR +DPNNPQSILLDFIS
Sbjct: 535  LRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFIS 594

Query: 600  SCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVS 659
            SCQNLRIWSLNTSTREYLN+EQLQKGKQIDEWWR V+KGDRM+DYMNMDDRS+GMFWVVS
Sbjct: 595  SCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVS 654

Query: 660  YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKL 719
            YTM+QPACETV+NWLSSAGV+EL  G+++  NERLMVMREVNPLP+SLL+G SLNLCLKL
Sbjct: 655  YTMSQPACETVVNWLSSAGVSEL-AGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKL 713

Query: 720  ALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVL 779
              Q+EDS+F GQV+ SIAMVETY RL+L+APHSLFRS FSHLAQR PSLL+K GVT LV 
Sbjct: 714  VFQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVF 773

Query: 780  EIVNYRLLPLYR-----YQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ 834
            EIVNYRLLPLYR     YQGK+K+LMYD+TKI+S LK KRGDHRV RLAENLCMNLILS 
Sbjct: 774  EIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSL 833

Query: 835  RDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHT 894
            RDFFS+KREGKG TEFTETLNR+TVI LAIIIKTRGIADADH+LYLQTMLEQIMATSQHT
Sbjct: 834  RDFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHT 893

Query: 895  WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLS 954
            WSEKTLRYFPSLL DAL GRIDKRGL IQ WQQ ETTVINQCTQLLSPSA+P YV TY++
Sbjct: 894  WSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYIN 953

Query: 955  HSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVE 1014
            HSFPQHRQYLCAGAWILMQGHPENINS NL RVLREFSPEEVTSNIYTMVDVLLH I +E
Sbjct: 954  HSFPQHRQYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQME 1013

Query: 1015 LQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQ 1074
            LQ GHSLQDLL K CAN++FFV  HELLPLDILLLAL DRDDDPHALRIVI+LLDRQELQ
Sbjct: 1014 LQHGHSLQDLLLKTCANLAFFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQ 1073

Query: 1075 QRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIV 1134
            QRVKL+CMNRGPPEHWL+SG+FKR+ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPLIV
Sbjct: 1074 QRVKLFCMNRGPPEHWLFSGVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIV 1133

Query: 1135 YRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSK 1194
            YRL+ENDA+D ADRVLA YS FLAY+PLRF+FVRDILAYFYGHLPGKLIVRILNV DLSK
Sbjct: 1134 YRLVENDAIDPADRVLAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSK 1193

Query: 1195 IPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDA---SLRAP 1251
            IPFSESFPQHISSSNPVMCPP +YFATLLLGLVNNV+P LN NSK GS  D    SLR P
Sbjct: 1194 IPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGSLGDGLCNSLRNP 1253

Query: 1252 HNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQI 1311
            + K+P TSQSGP+N+S+ +K FYQ QDPGTYTQLVLETAVIE+LSLPV+ASQIVSSLVQI
Sbjct: 1254 NTKTPATSQSGPTNISDAQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQI 1313

Query: 1312 VVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSR 1371
            VVNIQPTLIQ+SNG +GASN  GQGSVLPTSPSGGSTDSLGASRS PSVSGINT++FVSR
Sbjct: 1314 VVNIQPTLIQSSNGLHGASNGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSR 1373

Query: 1372 SGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVG 1431
            SGYTCQQLSCLLIQACGLLLAQLPPDFH+QLYMEASRIIKESWWL D KRSLGELDSAVG
Sbjct: 1374 SGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVG 1433

Query: 1432 YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVF 1491
            YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTH I+KHLRPITSVAMLRI F
Sbjct: 1434 YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAF 1493

Query: 1492 RIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHY 1551
            RIMGPLLPRL NAH+LFNKTL LLLNTM DV+G+N+ P  PVEASEIADLIDFLHHV+HY
Sbjct: 1494 RIMGPLLPRLANAHSLFNKTLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHY 1553

Query: 1552 EGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS 1611
            EGQGGPVQA+SKPR EVL L GRAAESLRP++QHLLSHLKPDVNSSIYAATHPK+VQNPS
Sbjct: 1554 EGQGGPVQANSKPRAEVLALCGRAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS 1613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356530772\|ref\|XP_003533954.1\| PREDICTED: uncharacterized protein LOC100798789 [Glycine max]	Back alignment and taxonomy information

>gi\|359472598\|ref\|XP_002281148.2\| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297845394\|ref\|XP_002890578.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi\|297336420\|gb\|EFH66837.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182788\|ref\|NP_001185071.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332192239\|gb\|AEE30360.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15220680\|ref\|NP_173737.1\| uncharacterized protein [Arabidopsis thaliana] gi\|395406782\|sp\|F4I4P3.1\|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi\|332192238\|gb\|AEE30359.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297737648\|emb\|CBI26849.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9295691\|gb\|AAF86997.1\|AC005292_6 F26F24.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|115448499\|ref\|NP_001048029.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|46390660\|dbj\|BAD16142.1\| unknown protein [Oryza sativa Japonica Group] gi\|113537560\|dbj\|BAF09943.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|222623623\|gb\|EEE57755.1\| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242062622\|ref\|XP_002452600.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor] gi\|241932431\|gb\|EES05576.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1611
TAIR\|locus:2028040		1615	AT1G23230 "AT1G23230" [Arabido	0.978	0.976	0.704	0.0
DICTYBASE\|DDB_G0270434		1662	med23 "putative mediator compl	0.255	0.247	0.233	7e-13
FB\|FBgn0034795		1439	MED23 "Mediator complex subuni	0.314	0.351	0.211	6.2e-10
ZFIN\|ZDB-GENE-040724-82		1387	med23 "mediator complex subuni	0.400	0.465	0.199	4.3e-07
UNIPROTKB\|F1N8H3		1392	MED23 "Uncharacterized protein	0.399	0.461	0.201	3.7e-05
RGD\|1307671		1367	Med23 "mediator complex subuni	0.432	0.509	0.193	0.00033
UNIPROTKB\|Q5EB59		1367	Med23 "Mediator of RNA polymer	0.432	0.509	0.193	0.00033
UNIPROTKB\|Q9ULK4		1368	MED23 "Mediator of RNA polymer	0.405	0.477	0.199	0.00034

TAIR\|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5870 (2071.4 bits), Expect = 0., P = 0.
 Identities = 1147/1627 (70%), Positives = 1314/1627 (80%)

Query:     4 NQSQRXXXXXXXXXXXXXXXYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
             +QSQR               YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct:     2 DQSQRTVAATPSSSRS----YQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57

Query:    64 VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
             V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct:    58 VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117

Query:   124 LRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
             LR+LC I YINWDTF          AE S  QG QA  A + +S   S      S +P  
Sbjct:   118 LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----QSVVP-- 170

Query:   184 SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDN 243
                 S NP S LPS HGIGSP+ S ++ SV       ++  +    ++   R +  +R  
Sbjct:   171 ---VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNSQRIRAA 223

Query:   244 AISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKA 303
             A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKSWR +K 
Sbjct:   224 AVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKT 283

Query:   304 LIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMA 363
             L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD MA
Sbjct:   284 LAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMA 343

Query:   364 MHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSI 423
             MHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GEDLA SI
Sbjct:   344 MHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSI 403

Query:   424 QRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAV 482
              +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT DMI EA+
Sbjct:   404 PKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAI 463

Query:   483 IDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCIDFVD 523
             IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSGC DFVD
Sbjct:   464 IDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVD 523

Query:   524 FVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDR 583
             F+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHREDR
Sbjct:   524 FIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDR 583

Query:   584 CTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGXXXXX 643
              +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SKG     
Sbjct:   584 NSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGERMMD 641

Query:   644 XXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPL 703
                    S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ +EV PL
Sbjct:   642 YMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEVTPL 698

Query:   704 PMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQ 763
             PMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS FS LAQ
Sbjct:   699 PMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQ 758

Query:   764 RNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA 823
             RN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ RLA
Sbjct:   759 RNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLA 818

Query:   824 ENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTM 883
             ENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YLQTM
Sbjct:   819 ENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTM 878

Query:   884 LEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPS 943
             LEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLLSPS
Sbjct:   879 LEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPS 938

Query:   944 ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTM 1003
             A+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NIYT+
Sbjct:   939 AEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTL 998

Query:  1004 VDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXXXHALRI 1063
             VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE                  HAL I
Sbjct:   999 VDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALII 1058

Query:  1064 VITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIA 1123
              ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFDDIA
Sbjct:  1059 AMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIA 1118

Query:  1124 ARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLI 1183
             ARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGHLPGKL+
Sbjct:  1119 ARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLV 1178

Query:  1184 VRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL----NYNSK 1239
             +R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L    N +S+
Sbjct:  1179 LRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSR 1238

Query:  1240 SGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILS 1296
             SGS  D   +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIEILS
Sbjct:  1239 SGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILS 1298

Query:  1297 LPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRS 1356
             LP                   TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ ASRS
Sbjct:  1299 LPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRS 1358

Query:  1357 TPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWL 1416
             T  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+WWL
Sbjct:  1359 TCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWL 1418

Query:  1417 ADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIK 1476
              DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+GT+ II 
Sbjct:  1419 KDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIIT 1478

Query:  1477 HLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEAS 1536
             +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK     APVEAS
Sbjct:  1479 NLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEAS 1538

Query:  1537 EIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNS 1596
             +IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HLK + NS
Sbjct:  1539 QIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNS 1598

Query:  1597 SIYAATH 1603
             SIYAA H
Sbjct:  1599 SIYAAAH 1605

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1307671 Med23 "mediator complex subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5EB59 Med23 "Mediator of RNA polymerase II transcription subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULK4 MED23 "Mediator of RNA polymerase II transcription subunit 23" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I4P3	MED23_ARATH	No assigned EC number	0.7349	0.9770	0.9746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1611
pfam11573		1341	pfam11573, Med23, Mediator complex subunit 23	5e-24

>gnl\|CDD\|221138 pfam11573, Med23, Mediator complex subunit 23	Back alignment and domain information

 Score =  110 bits (276), Expect = 5e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 645  MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 702
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 703  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 749
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 750  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 802
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 803  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 852
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 853  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 908
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 909  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 967
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 968  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 1026
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 1027 KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 1081
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 1082 MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 1126
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 1127 LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 1180
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 1181 -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 1233
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 1234 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 1294 ILSLPVSASQIVSSLVQIVVNIQP 1317
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1611
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0
PF11573		1341	Med23: Mediator complex subunit 23; InterPro: IPR0	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=7.7e-277  Score=2420.76  Aligned_cols=1400  Identities=23%  Similarity=0.242  Sum_probs=1292.2

Q ss_pred             CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCCchhhhHHhhccCCCCCCcchhhh
Q 000368            1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLI   80 (1611)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krv~a~~~~~~p~~eqf~~   80 (1611)
                      |||++  | .++++.+   +||.++|||+|++++|+|+||+|+.+|+|++.++|+++|||||||++-|+++||+||||++
T Consensus         1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~d~t~~r~~~~n~~~qe~~eQ~ll   74 (1517)
T KOG1883|consen    1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIGDETALRIQFGNMMMQEKEEQSLL   74 (1517)
T ss_pred             CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCCchhhHHHhcCCCCCCchhHHHHH
Confidence            45555  7 6777777   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccccHHHHhhhhhhhccccccccccc
Q 000368           81 DFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM  160 (1611)
Q Consensus        81 df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~~d~~l~~~~~~~~~~e~~~~q~~~~~  160 (1611)
                      ||+-++.+|.+.+|+|.++|++|+++|.||++||||++|++|   .||++|||+  ++|+++.|+++.+|.+..|++++.
T Consensus        75 ~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t~l~~l~s~i~ae~~kli~~vi~~  149 (1517)
T KOG1883|consen   75 KELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--TSLFRLCSRIWAEKFKLINDVIPK  149 (1517)
T ss_pred             HHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--cchHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999   899999999  999999999999999999999985


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccccccccccccccCCCCCCCC---ccccccc
Q 000368          161 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVN  237 (1611)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~  237 (1611)
                      ....+    ...+++.                 -|.|+||+ +|..+..|+--          .|-.+|+   ....|++
T Consensus       150 vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~----------Qi~~a~~vir~i~dRns  197 (1517)
T KOG1883|consen  150 VDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVN----------QILAAENVIRHIVDRNS  197 (1517)
T ss_pred             hchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHH----------HHHHHHHHHHHHHhccc
Confidence            44433    2233433                 46788888 77765544321          3444555   5567888


Q ss_pred             ccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccCCCccCCccccchhHHHHHHHHHHHHHHH
Q 000368          238 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWL  317 (1611)
Q Consensus       238 ~~~~~~~~~~l~~l~c~i~~~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~c~~vi~~  317 (1611)
                      ...+.       ++.|++|+.|.+.  ||++|++++++|.+|+|+| ++..|++..=+++|++++.+++| .+|||++|.
T Consensus       198 ~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~~~~i~Gr~~~~pi~l~~~-~~~l~~~W~  266 (1517)
T KOG1883|consen  198 CLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTADLSSICGRGSVLPIVLHPG-FYPLTNSWE  266 (1517)
T ss_pred             cccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-cccccchhhcccccccccccccC-cccchhhhe
Confidence            88776       8999999999998  9999999999999999999 88889988889999999999999 999999999


Q ss_pred             HhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCccccccccc
Q 000368          318 LVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG  397 (1611)
Q Consensus       318 lv~e~~~rvpfy~l~~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~~dqhlhcptf~t~~~~~~~~~~~~~~~~~  397 (1611)
                      |+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.|||+|||||++|||.++.+.++-.||+.
T Consensus       267 l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~  345 (1517)
T KOG1883|consen  267 LDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQRCPTLEEQLISLMICAMEMAEAES  345 (1517)
T ss_pred             ecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhcCCcHHHHhHHHhhhccccccccc
Confidence            98888 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccc
Q 000368          398 NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD  476 (1611)
Q Consensus       398 ~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~w~~vl~~ap~~~~~~~-~~~~~~~f~~~  476 (1611)
                      ++|.|||+       +|.||+++++|.+|+|   ++++|+||++|++|      ++|+++||||...| ++.+|+||+++
T Consensus       346 ~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~------~~L~~~~~~r~rdq~mwI~~qviss~  409 (1517)
T KOG1883|consen  346 LPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH------NKLKRCKLTRGRDQLMWILLQVISSS  409 (1517)
T ss_pred             cccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH------HHHhhcCcccccchhheeeHHHhhhh
Confidence            99999999       9999999999999999   99999999999998      99999999999999 99999999999


Q ss_pred             hhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHHhcccccHHHHHHHHHHhhccCCcccccc
Q 000368          477 MISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRT  542 (1611)
Q Consensus       477 mi~ea~i~r~~~ll~~~~--------------~~~~~w~eWl~fsd~f~fl~~~~~~df~~fi~kL~~r~~~gd~~~~~~  542 (1611)
                      |+|+|.+||++|++|++|              +.-+||++|+.|+|+|+||+|.||.||.|++++|        +|++|+
T Consensus       410 i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~Df~d~~~pl--------nh~Lr~  481 (1517)
T KOG1883|consen  410 IQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACTDFADKMPPL--------NHTLRS  481 (1517)
T ss_pred             hhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhccchhhccCcc--------cHHHHH
Confidence            999999999999999832              2238999999999999999999999999999999        889998


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCCCCCCCcchhhhhhccccceEEEeeccchHHhhcHHHh
Q 000368          543 NHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQL  622 (1611)
Q Consensus       543 nhv~wllaq~i~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~d~n~pqs~~~df~~s~q~l~iw~~n~~~~~~l~~~~~  622 (1611)
                       |+ |+|+|++|.+++|    +|..|++++++|+  |++|+..|+++|++.|||+++||||+|||.+.+++|++++++++
T Consensus       482 -H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~l  553 (1517)
T KOG1883|consen  482 -HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTAL  553 (1517)
T ss_pred             -HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchh
Confidence             88 9999999999999    7889999999999  99999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhcccccccccccCccceeeeeeehhcccchhhhHHHHhhhcCccccccCCCCCCCCccccccccccc
Q 000368          623 QKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP  702 (1611)
Q Consensus       623 q~~k~~~eww~~~~kg~~~~d~~n~DD~~iamL~vlssT~a~P~~Dtvm~~l~~~~v~e~ipG~~~~pn~~i~a~~~~~P  702 (1611)
                      -+++ +|+||...     ||||+++|++.++++|++..++|||.|+...+|.++++..+ .+                  
T Consensus       554 pv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~-~~------------------  608 (1517)
T KOG1883|consen  554 PVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA-VA------------------  608 (1517)
T ss_pred             hHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccccchhhhh-hc------------------
Confidence            9999 99999966     89999999999999999999999999988999997766665 33                  


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhhcCCccCChhHHHHHHHhhhcccc-hhhHhh------------hhhhhhcCchhh
Q 000368          703 LPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL------------FSHLAQRNPSLL  769 (1611)
Q Consensus       703 LpmsLLDsLTvh~kmsLi~qI~~~lf~~~~vPSPAlVETYsRLLvyte~-sL~~k~------------f~~LsQ~~psv~  769 (1611)
                                                         .+|||+|+++|+|+ ++++|+            |  ++|.+|+|+
T Consensus       609 -----------------------------------~le~~arllv~~ei~sl~isg~~~~~~~~~~~~F--lsqllptv~  651 (1517)
T KOG1883|consen  609 -----------------------------------LLETYARLLVYVEIESLGISGEHQNVQAKDQCYF--LSQLLPTVF  651 (1517)
T ss_pred             -----------------------------------ccchhhhhheeeeeeccccCchhhhhhhHHhhhH--HHHHHHHHH
Confidence                                               45666666666666 456665            6  899999999


Q ss_pred             h--hcchhhHHHHHhhccc---cccccccCcchhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc--------
Q 000368          770 A--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD--------  836 (1611)
Q Consensus       770 k--a~g~l~~LLEilSYRL---~p~YRyq~ks~~llhsL~~ii~~~~nq~q~H~llr~lEs~~LrLIlsl~s--------  836 (1611)
                      +  +|+.+|+++|++|||+   +++||+|+.+.  +|.+..+  ++.|++|.|.   |+|++++|+|+++|+        
T Consensus       652 ~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~  724 (1517)
T KOG1883|consen  652 KHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFA  724 (1517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHh
Confidence            9  9999999999999999   89999999996  9988777  8999999998   999999999999987        


Q ss_pred             -ccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhcc
Q 000368          837 -FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGR  914 (1611)
Q Consensus       837 -f~~~q~~~~~ps~~SEELNR~LILTLARsiKitGiad~~~g~~~k~~L~~Im~ntph~WpekTLr~FP-~~Lre~f~~~  914 (1611)
                       ||..|.+|++|++|||||||++|+||||++||||++|.++|+|||+||++||++|||+||+|||+||| ..|.++|.+|
T Consensus       725 ~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~  804 (1517)
T KOG1883|consen  725 RFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN  804 (1517)
T ss_pred             hhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC
Confidence             99999999999999999999999999999999999999999999999999999999999999999999 6777777766


Q ss_pred             cCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhhhhcccCCCCCcchHHHHHHHhhCCCCCCChhhHHHHHhhcChh
Q 000368          915 IDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPE  994 (1611)
Q Consensus       915 ~D~~~l~~q~~qql~~tV~ee~r~~~Sms~E~~~V~~yi~hf~p~~~~fLC~l~~ml~~~~~e~I~~~~lyrVLe~ispr  994 (1611)
                          |.++++|||++|+|+||||+|+||+|||+||..|+.|.  .+|+|||+++...|.+++||||+++ |||||++|||
T Consensus       805 ----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~m~~~teNIns~~-yrVLe~ispr  877 (1517)
T KOG1883|consen  805 ----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPR  877 (1517)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHH
Confidence                89999999999999999999999999995555555553  4699999997666766799999999 9999999999


Q ss_pred             HHHHhhhhhhchhheehhhccccCCchhHHHHHHHhHhhhhhhhccccchhhhhhhhccCCCCCc-----hhhHhhhhcC
Q 000368          995 EVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLD 1069 (1611)
Q Consensus       995 evta~i~~fvDyLv~e~~~elq~g~~~Q~lv~kcv~~LndmIWkynIVpLDRLLL~LalR~dEgn-----~liIqlLLL~ 1069 (1611)
                      |+++|+||||||||++++    .++++|++++||+++||+||||||++|+||||||||+|++||+     ++|||++|++
T Consensus       878 elva~~~tlvDyLvad~~----t~~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLlt  953 (1517)
T KOG1883|consen  878 ELVAHGRTLVDYLVADAK----TSDCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLT  953 (1517)
T ss_pred             HHHHHHHHHHHHhhhhhh----cccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcC
Confidence            999999999999999887    5778999999999999999999999999999999999998887     5555666655


Q ss_pred             cHHHHHHHHHHHHcCCCCCccccccc------hhhhhhHHH---HhccC--CCCCCCCcchhhHHhhhcCchhHHHHHHH
Q 000368         1070 RQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNHL--SWKERYPTFFDDIAARLLPVIPLIVYRLI 1138 (1611)
Q Consensus      1070 ~~EFqqRV~~Fv~~~~spEHW~~s~~------fhrkfPEk~---lg~~l--s~~~~lPvYFgNVcLR~LPViDiVIhR~L 1138 (1611)
                      + |||+||++||++ |+||||+ ++|      ||++|||++   ++++.  +.++|||+||||||+|||||+|+|+||||
T Consensus       954 p-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~l 1030 (1517)
T KOG1883|consen  954 P-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFL 1030 (1517)
T ss_pred             H-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHH
Confidence            5 999999999997 9999999 888      899999965   55553  44789999999999999999999999999


Q ss_pred             hcCc-hhhHHHHHHHhccccccCCcchhhhhHhHHhhhccC---ch--HHHHHHHhhcccCCCCCCcchhhhccCCCCCC
Q 000368         1139 ENDA-MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVM 1212 (1611)
Q Consensus      1139 E~~~-~k~letLL~~~g~LYkYHd~PvTFvY~tLhYY~~~L---p~--kLV~~ILg~Ld~~r~plSEsF~~y~~~~~~~~ 1212 (1611)
                      |+++ .|.+++||+|+|.||||||+|+|||||||||||+||   |+  |||.+|.++|++  ++|||+|.+|+++++..|
T Consensus      1031 E~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~ 1108 (1517)
T KOG1883|consen 1031 ELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPW 1108 (1517)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCC
Confidence            9999 699999999999999999999999999999999999   44  899999999988  669999999999999999


Q ss_pred             CCChhHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcchhhhhhhccee
Q 000368         1213 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 1292 (1611)
Q Consensus      1213 ~P~~~Yy~~Ll~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~~~p~~~s~~DwrF~EfpnPga~al~vL~tacI 1292 (1611)
                      ||+++|||.||+||||++.+              ++              +|+|+.+||||+||+||++||+||   +||
T Consensus      1109 ~pel~y~~sLi~rLvdt~~~--------------~l--------------~~~f~ncdwR~~e~~n~~a~al~~---~cv 1157 (1517)
T KOG1883|consen 1109 SPELDYYMSLIDRLVDTLDG--------------KL--------------TPPFVNCDWRFNEFPNPGAHALYV---TCV 1157 (1517)
T ss_pred             CCcHHHHHHHHHHHHhhcCC--------------CC--------------CCCCcccccccccCCCcccccccc---chh
Confidence            99999999999999988843              21              235666999999999999999995   779


Q ss_pred             ecccCCCCHHHHHHHHHHhhhcc----------------------------------------CccccccCCCCCCCCCC
Q 000368         1293 EILSLPVSASQIVSSLVQIVVNI----------------------------------------QPTLIQTSNGPYGASNS 1332 (1611)
Q Consensus      1293 ELLsLPvsp~~Vv~aLvdvvv~~----------------------------------------~~~l~q~~~~~~~~~~~ 1332 (1611)
                      |+|++|++|..++++|+|++++.                                        +.+.+|+++|+||.-+|
T Consensus      1158 elma~~~sgp~~asalinv~~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~~~fd 1237 (1517)
T KOG1883|consen 1158 ELMALPVSGPTVASALINVMQMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEFILFD 1237 (1517)
T ss_pred             hhcCCCCCcHhHHHHHHHHHhhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCceeecc
Confidence            99999999998888877766544                                        44567889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc
Q 000368         1333 VGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKE 1412 (1611)
Q Consensus      1333 ~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~INAiGLLLaaLP~~f~~~ly~ei~~vik~ 1412 (1611)
                      +|+++++|++||+|.|++ +.++|+-.|+|||.-+|+||+ |||++++|..++++||.+++||.+|+..+|.|..|..-+
T Consensus      1238 ~~~~s~l~~~ps~a~Tl~-a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~~~e 1315 (1517)
T KOG1883|consen 1238 FYEESLLLNEPSRARTLN-AISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRENFE 1315 (1517)
T ss_pred             ccchhccccCCccchhhH-HHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhhhhh
Confidence            999999999999999999 999999999999999999999 999999999999999999999999999999999999998


Q ss_pred             -CccccCCCCCcccccccccccccCCcccccccCc-chhHHHHH-HHHHHHhcCChhhhhhHHHHHhhcCccchHHHHHH
Q 000368         1413 -SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS-TAIGNIVA-LLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRI 1489 (1611)
Q Consensus      1413 -~w~l~d~k~s~~elDs~~~y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~h~~~~~L~~~~~~i~~LrPv~Te~qL~~ 1489 (1611)
                       .||++|++.+.+|.|  +||...||.|+.++|+. +.+|++++ .+|++|.+++.+|..++.-++.+.||+++.++...
T Consensus      1316 ~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~nLp~~l~drlrfi~~~s~p~~~~at~~~ 1393 (1517)
T KOG1883|consen 1316 IVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCKYFFAGDIVKNTAEAIFANLPPKLRDRLRFITHQSEPTEEQATPPE 1393 (1517)
T ss_pred             hHHHHHHHhhhhhhcC--CceeecchHHHHHhhhhhhhhhHHHHHHHHHHHHcCCHHHHhhhhhhhhcccccccccccch
Confidence             899999999999988  99999999999999988 99999999 99999999999999999988899999999999999


Q ss_pred             HHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhceeeEEeccCCCCCCCCCCchhhh
Q 000368         1490 VFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVL 1569 (1611)
Q Consensus      1490 ~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~ICDFLyHIYMFVG~g~~~~d~~K~~vE~~ 1569 (1611)
                      +++.+||.+||.....+.+.++...+.--..+++||..|..+.++....++..|+.+|+-+++||||.||.++|+++.+|
T Consensus      1394 ~~~s~~~~~pa~sS~q~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~~l 1473 (1517)
T KOG1883|consen 1394 KENSPEESTPAVSSLQAPLLPSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPGFL 1473 (1517)
T ss_pred             hhcCcccCCcccccccCccCchhhhCCCccCCchhhhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCccc
Confidence            99999999999999989999998888888889999998888889999999999999999999999999999999999999


Q ss_pred             hhhhHhhhhCCHhHHHHhcccCCCCCCchhhccCcccc
Q 000368         1570 VLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMV 1607 (1611)
Q Consensus      1570 ~~~~~iI~~LrP~LQ~~LrHL~~d~~ss~~aa~h~~~~ 1607 (1611)
                      +++|+|-+-++|.+||.+.|.+..+++++||+.|..+.
T Consensus      1474 ~~~g~~~~~~~~y~qHmqqH~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1474 HPSGPVGHVPMQYGQHMQQHPHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred             cccccccccchhhHHHHHhccCCCccccCCcchhccCc
Confidence            99999999999999999999999999999999997653

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity	Back alignment and domain information

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1611
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 77.6 bits (190), Expect = 3e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 802  DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 841
            D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40   DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 842  REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 887
             E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100  TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 888  MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 936
            +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 937  TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 985
            T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214  TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 986  ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 1032
                ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263  NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 1033 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1092
                L  E+L  +   L++I                                   ++W +
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 1093 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 1144
                K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350  VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1145 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 1190
              ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407  VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 1191 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 1248
            DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463  DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 1249 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 1303
            R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508  R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 1304 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 1335
            ++ S    L++I       L+      +  ++   Q
Sbjct: 559  LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00