Citrus Sinensis ID: 000407

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------156

MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST

cccccccccccccccccccccHHcccccccccccccccccccccHHHHcccccccccccccccHHHHHcccccccHHcccccHHHHHccccccccHHHHHcccccccccccccccccEEEEccccccccccccccccEEEEEEEEEcccccccccccccccccccccCEEEEEECcccCEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccccHHHHHHHcccccccccccccccCEEcccEEEEcccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccEEEcccEEEEEEEccEEEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccEEEEcccccccHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccCCccccccccccHHHHHHHHHHHcccccccccccHHHHccccccHHHHccccccccHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccEEEEEEEccEEEEcccEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEcccccccccccccccEEEEcccccccccccEEEEEEEECccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEEEccEEEEEccEEEEccccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEcccccccccccccccccEEEEcccEEEEEcccEEEEEEEEEccccccccccccccccEEEEEEEcccccccccccccHccccccccccccHHHHccccccccccccHHHHccccccccccccEEccccccccHHHHHHHccccEEEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHcccHHHHHHHHHHcccHHcccccccccEEEEECcccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccccccEEEEEECcccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccCCccccccccccEEccccccccccccccccccccccHHHHHHHcccccccEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHccc

**********************************************************************************YLVEAKKDQYADDEIVAVGLTA********RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQES**********CEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL**********VQ******************************************************************NKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFC******************GGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK*************************MQATTTRLINRIWGEYYSNYS*****************************************************TKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACG***********KVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLP*********************************************LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES****

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA (cytosine-5)-methyltransferase 1A	Probably methylates CpG residues and maintains DNA methylation. May be involved in methylation-dependent gene silencing.	probable	Q7Y1I7
DNA (cytosine-5)-methyltransferase 1	Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells. Required for MEA promoter methylation in seeds.	probable	P34881
DNA (cytosine-5)-methyltransferase 1B	Probably methylates CpG residues and maintains DNA methylation.	probable	B1Q3J6

Prediction of Enzyme Commission Number

EC Number	Description	Confidence Level
2.-.-.-	Transferases.	probable
2.1.-.-	Transferring one-carbon groups.	probable
2.1.1.-	15-hydroxyprostaglandin-I dehydrogenase (NADP(+)).	probable
2.1.1.37	DNA (cytosine-5-)-methyltransferase.	probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3G7U, chain A
Confidence level:very confident
Coverage over the Query: 1124-1169,1184-1189,1203-1230,1241-1340,1362-1439,1451-1481,1493-1554
View the alignment between query and template
View the model in PyMOL

Template: 3SWR, chain A
Confidence level:very confident
Coverage over the Query: 654-856,868-1081,1104-1184,1203-1555
View the alignment between query and template
View the model in PyMOL

Template: 3EPZ, chain A
Confidence level:confident
Coverage over the Query: 62-299
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID	Alignment Graph	Confidence Level	View Alignment and Template
Query
3av4, chain A		very confident	Alignment \| Template Structure
3av4, chain A		confident	Alignment \| Template Structure