Citrus Sinensis ID: 000407
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1558 | 2.2.26 [Sep-21-2011] | |||||||
| P34881 | 1534 | DNA (cytosine-5)-methyltr | yes | no | 0.946 | 0.960 | 0.628 | 0.0 | |
| B1Q3J6 | 1529 | DNA (cytosine-5)-methyltr | yes | no | 0.945 | 0.963 | 0.601 | 0.0 | |
| Q7Y1I7 | 1527 | DNA (cytosine-5)-methyltr | yes | no | 0.956 | 0.975 | 0.590 | 0.0 | |
| Q24K09 | 1611 | DNA (cytosine-5)-methyltr | yes | no | 0.497 | 0.481 | 0.354 | 1e-153 | |
| P26358 | 1616 | DNA (cytosine-5)-methyltr | yes | no | 0.497 | 0.479 | 0.355 | 1e-153 | |
| Q92072 | 1537 | DNA (cytosine-5)-methyltr | yes | no | 0.693 | 0.703 | 0.301 | 1e-148 | |
| Q27746 | 1612 | DNA (cytosine-5)-methyltr | N/A | no | 0.535 | 0.517 | 0.339 | 1e-145 | |
| P13864 | 1620 | DNA (cytosine-5)-methyltr | yes | no | 0.494 | 0.475 | 0.345 | 1e-143 | |
| Q9Z330 | 1622 | DNA (cytosine-5)-methyltr | yes | no | 0.492 | 0.472 | 0.335 | 1e-128 | |
| Q94F87 | 1295 | DNA (cytosine-5)-methyltr | no | no | 0.214 | 0.257 | 0.368 | 3e-57 |
| >sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1867 bits (4836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 949/1509 (62%), Positives = 1151/1509 (76%), Gaps = 35/1509 (2%)
Query: 68 CTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDG--DRPNRRLNDFILHDENG 125
CT FKEKS+R+ EKS +E KK Q ++E +A+ LTA + DRP RRLNDF+L D +G
Sbjct: 37 CTSFKEKSIRVCEKSATIEVKKQQIVEEEFLALRLTALETDVEDRPTRRLNDFVLFDSDG 96
Query: 126 LPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLS 185
+PQPLEMLEI D+F+SG ILP +D+EKEKGVRC FGR+E WSISGYEDGSPVIW+S
Sbjct: 97 VPQPLEMLEIHDIFVSGAILPSDVCTDKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWIS 156
Query: 186 TDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMS 245
T++ADYDC KPA+SY+K Y+ F+EKARA + VYKKLSK+SGG+ D ++ELLA VVRSMS
Sbjct: 157 TELADYDCRKPAASYRKVYDYFYEKARASVAVYKKLSKSSGGDPDIGLEELLAAVVRSMS 216
Query: 246 -GSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
GSK F G +I DFVISQG+FI+NQL GLDET+KK++ + E+PVLVAL+E+SSK +
Sbjct: 217 SGSKYFSSGAAIIDFVISQGDFIYNQLAGLDETAKKHESSYVEIPVLVALREKSSKIDKP 276
Query: 305 VQV-NAASLGGNLAIGSKVGDGDG-KMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQ 362
+Q S G + S+V + + DQ T D+D + A LLQ+EE +S +Q
Sbjct: 277 LQRERNPSNGVRIKEVSQVAESEALTSDQLVDGT-----DDDRRYAILLQDEENRKSMQQ 331
Query: 363 -KKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPR 421
+K S S N FYIKINEDEIANDYP P +Y+ SEEE DEL+ YD+ Y+ + LP
Sbjct: 332 PRKNSSSGSASNMFYIKINEDEIANDYPLPSYYKTSEEETDELILYDASYE-VQSEHLPH 390
Query: 422 RMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCL-DTDSSQCTSG 480
RMLH+W+LYNSD R ISLELLPMK C+DIDV IFGSG + D GS L D DS
Sbjct: 391 RMLHNWALYNSDLRFISLELLPMKQCDDIDVNIFGSGVVTDDNGSWISLNDPDSG----- 445
Query: 481 VSGAQDAGGFPIYLSSIKEWMIEFGSS-MIFISIRTDLAWYRLGKPSKQYAPWYEPVLKT 539
S + D G I+LS IKEWMIEFGS +I ISIRTD+AWYRLGKPSK YAPW++PVLKT
Sbjct: 446 -SQSHDPDGMCIFLSQIKEWMIEFGSDDIISISIRTDVAWYRLGKPSKLYAPWWKPVLKT 504
Query: 540 ARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQ 599
ARV ISI+T L+ ++RV+RLSF DV KRLS ++ + +YISSDP AVERY+VVHGQI+LQ
Sbjct: 505 ARVGISILTFLRVESRVARLSFADVTKRLSGLQANDKAYISSDPLAVERYLVVHGQIILQ 564
Query: 600 LFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK 659
LFA YPD+ +K+C F++GL K+E+RHHTKW++KKKK+ E+NLNPRA M PV SKRK
Sbjct: 565 LFAVYPDDNVKRCPFVVGLASKLEDRHHTKWIIKKKKISLKELNLNPRAGMAPVA-SKRK 623
Query: 660 VMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEE 719
MQATTTRL+NRIWGE+YSNYSPED + TA E EDE EE G EE+ EE + E
Sbjct: 624 AMQATTTRLVNRIWGEFYSNYSPEDPLQATAAENGEDEVEEEGGNGEEEVEEEGENGLTE 683
Query: 720 RQISCSVAVQ-------IKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAV 770
+ V VQ I+ S K+EI W+GE + K+ G LY++A+V GE+V++G AV
Sbjct: 684 DTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLGKTSAGEPLYQQALVGGEMVAVGGAV 743
Query: 771 LVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDL 830
+EVD+ D++P IYFVEYMFE+T CK+ HG +QRGS TVLGN ANERE+FL N+C
Sbjct: 744 TLEVDDPDEMPAIYFVEYMFESTDHCKMLHGRFLQRGSMTVLGNAANERELFLTNECMTT 803
Query: 831 ELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERG 890
+L+DIK +IRS PWGHQ+RK ADK+D ARA ERK K LPTEYYCKSLY PERG
Sbjct: 804 QLKDIKGVASFEIRSRPWGHQYRKKNITADKLDWARALERKVKDLPTEYYCKSLYSPERG 863
Query: 891 AFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHH 949
FF LP+ +G G C +C +E E+++ T K++ SKT F EY V D+VY++P
Sbjct: 864 GFFSLPLSDIGRSSGFCTSCKIREDEEKRSTIKLNVSKTGFFINGIEYSVEDFVYVNPDS 923
Query: 950 FTWDKAEGET-FKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
K +T FK+GRN+GL+ YVVCQLLEI VPKE ++A++ S VKVRRF+RP+D+SA
Sbjct: 924 IGGLKEGSKTSFKSGRNIGLRAYVVCQLLEI-VPKESRKADLGSFDVKVRRFYRPEDVSA 982
Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
EKAY SDI+E+Y+S++T ++ A+ GKCEVRKK+D+P I HIFFC+ D SK
Sbjct: 983 EKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPISDHIFFCDLFFDTSK 1042
Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
GSLKQLPA++K ++S+ + + R+KKGK +E E E E+ K +E LATLDIFA
Sbjct: 1043 GSLKQLPANMKPKFST--IKDDTLLRKKKGKGVESEIESEIVKPVEPPKEIRLATLDIFA 1100
Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
GCGGLS GL+++G+S KWAIEYEEPAG+AFK NHPES + ++NCNVILRA+MEK GD +
Sbjct: 1101 GCGGLSHGLKKAGVSDAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQD 1160
Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
DCVST+EA ELAA L E + LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMI
Sbjct: 1161 DCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMI 1220
Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
LAFLSFADYF+PRYFLLENVR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQ
Sbjct: 1221 LAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQ 1280
Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
SRKRAFIWAA+P + LPEWPEPMHVF P+LKI LS Y+AVRSTA GAPFR +TVRD
Sbjct: 1281 SRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRD 1340
Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
TIGDLP+V NG S+T EY+ VSWFQK IRGN LTDHI K MNELNLIRC+ IP R
Sbjct: 1341 TIGDLPSVENGDSRTNKEYKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTR 1400
Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
PGADWHDLP KV LS G+V ++IP+CLPNTA+RHN WKGL+GRLDW+GNFPTS+TDPQP
Sbjct: 1401 PGADWHDLPKRKVTLSDGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQP 1460
Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
MGKVGMCFHP+Q RILTVRECARSQGFPDSY+F G+I HKHRQIGNAVPP LAFALGRKL
Sbjct: 1461 MGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALGRKL 1520
Query: 1549 KEAVESKRS 1557
KEA+ K+S
Sbjct: 1521 KEALHLKKS 1529
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Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells. Required for MEA promoter methylation in seeds. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7 |
| >sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus GN=DNMT PE=2 SV=1 | Back alignment and function description |
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| >sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1 SV=5 | Back alignment and function description |
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| >sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1558 | ||||||
| 255553977 | 1542 | DNA (cytosine-5)-methyltransferase, puta | 0.980 | 0.990 | 0.744 | 0.0 | |
| 225463167 | 1549 | PREDICTED: DNA (cytosine-5)-methyltransf | 0.987 | 0.992 | 0.744 | 0.0 | |
| 224077654 | 1529 | DNA methyltransferase [Populus trichocar | 0.956 | 0.975 | 0.726 | 0.0 | |
| 359480931 | 1530 | PREDICTED: DNA (cytosine-5)-methyltransf | 0.971 | 0.988 | 0.731 | 0.0 | |
| 224144433 | 1549 | DNA methyltransferase [Populus trichocar | 0.980 | 0.986 | 0.712 | 0.0 | |
| 357498929 | 1573 | DNA (cytosine-5)-methyltransferase [Medi | 0.993 | 0.984 | 0.690 | 0.0 | |
| 117307345 | 1558 | DNA methyltransferase type 1 [Nicotiana | 0.992 | 0.992 | 0.694 | 0.0 | |
| 169977306 | 1558 | DNA (cytosine-5) methyltransferase [Nico | 0.993 | 0.993 | 0.691 | 0.0 | |
| 7288140 | 1556 | DNA (cytosine-5-)-methyltransferase [Nic | 0.982 | 0.983 | 0.695 | 0.0 | |
| 411012963 | 1570 | MET-type cytosine DNA-methyltransferase | 0.985 | 0.978 | 0.710 | 0.0 |
| >gi|255553977|ref|XP_002518029.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] gi|223543011|gb|EEF44547.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2375 bits (6154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1150/1545 (74%), Positives = 1321/1545 (85%), Gaps = 17/1545 (1%)
Query: 23 MKNKKRKPKSEVPE-TKDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEKSVRI 78
MK K KPKS V + K+ + KEK + SQ +EEP +KRPKR AACTDFKEK+VR+
Sbjct: 1 MKKNKGKPKSSVSKANKEQINNIKEKKRSSSQKNEEPAGSKKRPKRAAACTDFKEKAVRL 60
Query: 79 SEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDL 138
S+KS ++E+++DQ+ADDEI+AV LT QD RPNRRL DF++HDENG PQPLEM+E+DD+
Sbjct: 61 SDKSSVLESRRDQFADDEILAVHLTHGQDDGRPNRRLTDFVVHDENGTPQPLEMIEVDDM 120
Query: 139 FISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPAS 198
FISGLILPL E+ D+EKEK VRCEGFGRIE W ISGYEDG PVIWL+TDIADY+CLKPA+
Sbjct: 121 FISGLILPLDENPDKEKEKRVRCEGFGRIEGWDISGYEDGFPVIWLTTDIADYNCLKPAN 180
Query: 199 SYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKD 258
+YKK+Y+ FFEKARACIEVYKKLS++SGGN D ++DELLAGVVRSMSGSKCF G SIKD
Sbjct: 181 NYKKFYDHFFEKARACIEVYKKLSRSSGGNPDLTLDELLAGVVRSMSGSKCFSGAASIKD 240
Query: 259 FVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAI 318
FVISQG FI+ QL+GLDETSK NDQKFA+L L+AL+++S + NFV A + GNL I
Sbjct: 241 FVISQGNFIYKQLLGLDETSKNNDQKFADLSALLALRDKSEEHGNFVLAKAVNTSGNLTI 300
Query: 319 GSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQS-KKQKKTQGSTSGMNKFYI 377
K GD ++Q SST A EDEDAKLARLLQEEE WQ+ KKQKK GS S N YI
Sbjct: 301 YQKFGDSVSNVNQSISSTA-AGEDEDAKLARLLQEEEYWQTTKKQKKIHGSASSSNTIYI 359
Query: 378 KINEDEIANDYPFPVFYRPSEEEFDELLAYDSD-YDSCDIDQLPRRMLHDWSLYNSDSRL 436
KINEDEIANDYP PVFY+ S+EE DE +A D++ + D D+LP+RMLH+WSLYNSDSRL
Sbjct: 360 KINEDEIANDYPLPVFYKHSDEETDEYIAIDTEEHIMVDPDELPKRMLHNWSLYNSDSRL 419
Query: 437 ISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSS 496
ISLELLPMKPCEDIDVTIFGSG+M D+GSGF LD D Q +S SGAQD G PI+LS+
Sbjct: 420 ISLELLPMKPCEDIDVTIFGSGRMTEDDGSGFSLDDDPDQSSSAGSGAQDDVGLPIFLSA 479
Query: 497 IKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRV 556
IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQY WY+PVLKTA++A SIIT+LKEQ+RV
Sbjct: 480 IKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYTSWYKPVLKTAKLARSIITLLKEQSRV 539
Query: 557 SRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFII 616
SRLSF DVI+R+SE KKD H YISSDPA VERYVVVHGQI+LQLFAE+PDE+IKKCAF++
Sbjct: 540 SRLSFGDVIRRVSEFKKDDHGYISSDPATVERYVVVHGQIILQLFAEFPDEKIKKCAFVV 599
Query: 617 GLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPV--VVSKRKVMQATTTRLINRIW 673
GL KMEERHHTKW+V KK++ QK++ NLNPRA+M + VVSKRK MQATTTRLINRIW
Sbjct: 600 GLTSKMEERHHTKWVVNKKQILQKNQPNLNPRAAMSSMAPVVSKRKAMQATTTRLINRIW 659
Query: 674 GEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSR 733
GEYYSNYSPED KE T CEA E++EVEEQ ENE+D EE+ L+S++ Q +CS++ + KS
Sbjct: 660 GEYYSNYSPEDLKEATNCEAKEEDEVEEQEENEDDAEEEKLLLSDKTQKACSMSSRTKSY 719
Query: 734 STKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
S K E+ W+G V K SG A+Y AIV GEV+ +G+AV +EVDE D+LP IYFVEYMFE
Sbjct: 720 S-KDEVLWDGNPVSKTHSGEAIYNSAIVRGEVIKVGAAVYLEVDESDELPAIYFVEYMFE 778
Query: 792 ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQ 851
+GG K+FHG +MQ GS T+LGN ANEREVFL N+C + ELQD+KQ + V++R +PWG+Q
Sbjct: 779 TSGGSKMFHGRVMQHGSGTILGNAANEREVFLTNECLNYELQDVKQAIAVEVRKMPWGYQ 838
Query: 852 HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACG 911
HR D A AD++DRA+AEERKKKGLP EYYCKS+YWPERGAFF LP DSMGLG G CH+C
Sbjct: 839 HRNDNATADRIDRAKAEERKKKGLPLEYYCKSMYWPERGAFFSLPFDSMGLGSGICHSCK 898
Query: 912 TKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
KE E EK F+V+S +T FV+ EY +HD+VY+SP HFT ++ E ET+K GRNVGLK
Sbjct: 899 VKEVEMEKYIFRVNSSRTGFVHMGTEYSIHDFVYVSPCHFTIER-EAETYKGGRNVGLKA 957
Query: 971 YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
Y VCQLLEI+VPKEPK+AE STQVK+RRF RP+DIS+EKAYCSDIREVYY+EETHL+ V
Sbjct: 958 YAVCQLLEIVVPKEPKQAEATSTQVKIRRFSRPEDISSEKAYCSDIREVYYTEETHLLSV 1017
Query: 1031 EAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSE 1090
E I GKCEVRKKNDIP C + AIF HIFFCEHL+DPSKGSLKQLPAHIKLRYS+G+ +S+
Sbjct: 1018 ETIEGKCEVRKKNDIPPCGSAAIFDHIFFCEHLYDPSKGSLKQLPAHIKLRYSTGTQESD 1077
Query: 1091 AASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIE 1150
AASR++KGKC EGEDE+E +++ A+Q LATLDIF+GCGGLSEGLQQ+G+SSTKWAIE
Sbjct: 1078 AASRKRKGKCKEGEDEVENKRE--ATQGRRLATLDIFSGCGGLSEGLQQAGVSSTKWAIE 1135
Query: 1151 YEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINN 1210
YEEPAGEAFKLNHPESL+ INNCNVILRAVMEKCGD +DC+STSEA ELAASLDE +IN+
Sbjct: 1136 YEEPAGEAFKLNHPESLVFINNCNVILRAVMEKCGDTDDCISTSEAIELAASLDEKIIND 1195
Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
LPLPGQVDFINGGPPCQGFSGMNRF+QSTWSKVQCEMILAFLSFADYF+P+YFLLENVRN
Sbjct: 1196 LPLPGQVDFINGGPPCQGFSGMNRFSQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRN 1255
Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
FVSFNKGQTFRL LASLLEMGYQVRFGILEAGA+GVS SRKRAFIWAASP + LPEWPEP
Sbjct: 1256 FVSFNKGQTFRLALASLLEMGYQVRFGILEAGAYGVSHSRKRAFIWAASPEEVLPEWPEP 1315
Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
MHVF+APELKI LS N Y+AVRSTANGAPFRA+TVRDTIGDLP VGNGAS T MEY+ND
Sbjct: 1316 MHVFSAPELKISLSGNSHYAAVRSTANGAPFRAITVRDTIGDLPVVGNGASATNMEYKND 1375
Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
PVSWFQKRIRGNM LTDHISKEMNELNLIRCQKIPKRPGADW DLPDEKVKLSTGQ+VD
Sbjct: 1376 PVSWFQKRIRGNMVTLTDHISKEMNELNLIRCQKIPKRPGADWRDLPDEKVKLSTGQLVD 1435
Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP+QDRILTVRECA
Sbjct: 1436 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRILTVRECA 1495
Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
RSQGF DSY+F G+IQHKHRQIGNAVPP LA+ALG KLKEA++ +
Sbjct: 1496 RSQGFRDSYKFAGNIQHKHRQIGNAVPPPLAYALGIKLKEALDGR 1540
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463167|ref|XP_002267200.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224077654|ref|XP_002305346.1| DNA methyltransferase [Populus trichocarpa] gi|222848310|gb|EEE85857.1| DNA methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359480931|ref|XP_002267284.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224144433|ref|XP_002325288.1| DNA methyltransferase [Populus trichocarpa] gi|222862163|gb|EEE99669.1| DNA methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357498929|ref|XP_003619753.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|355494768|gb|AES75971.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|117307345|dbj|BAF36443.1| DNA methyltransferase type 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
| >gi|169977306|emb|CAQ18900.1| DNA (cytosine-5) methyltransferase [Nicotiana sylvestris] | Back alignment and taxonomy information |
|---|
| >gi|7288140|dbj|BAA92852.1| DNA (cytosine-5-)-methyltransferase [Nicotiana tabacum] gi|56130955|gb|AAV80209.1| cytosine-5-methyltransferase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
| >gi|411012963|gb|AFV99138.1| MET-type cytosine DNA-methyltransferase 1 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1558 | ||||||
| TAIR|locus:2155959 | 1534 | MET1 "methyltransferase 1" [Ar | 0.961 | 0.976 | 0.600 | 0.0 | |
| UNIPROTKB|Q7Y1I7 | 1527 | MET1A "DNA (cytosine-5)-methyl | 0.768 | 0.784 | 0.598 | 0.0 | |
| TAIR|locus:2122313 | 1512 | AT4G08990 [Arabidopsis thalian | 0.529 | 0.545 | 0.624 | 0.0 | |
| TAIR|locus:2140892 | 1404 | MEE57 "maternal effect embryo | 0.517 | 0.574 | 0.578 | 0.0 | |
| UNIPROTKB|Q24K09 | 1611 | DNMT1 "DNA (cytosine-5)-methyl | 0.150 | 0.145 | 0.512 | 6.3e-143 | |
| UNIPROTKB|P26358 | 1616 | DNMT1 "DNA (cytosine-5)-methyl | 0.150 | 0.145 | 0.512 | 2.2e-142 | |
| UNIPROTKB|F5GX68 | 1619 | DNMT1 "Cytosine-specific methy | 0.150 | 0.145 | 0.512 | 2.3e-142 | |
| UNIPROTKB|F1S3I5 | 1611 | DNMT1 "Cytosine-specific methy | 0.150 | 0.145 | 0.512 | 2.3e-142 | |
| UNIPROTKB|E2RHC6 | 1613 | DNMT1 "Cytosine-specific methy | 0.150 | 0.145 | 0.516 | 3.5e-141 | |
| UNIPROTKB|Q92072 | 1537 | DNMT1 "DNA (cytosine-5)-methyl | 0.150 | 0.152 | 0.512 | 1.3e-139 |
| TAIR|locus:2155959 MET1 "methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4665 (1647.2 bits), Expect = 0., P = 0.
Identities = 921/1534 (60%), Positives = 1117/1534 (72%)
Query: 44 QKEKMKKLSQDSEEPR-KRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGL 102
+K + ++ + + PR +RP+R AACT FKEKS+R+ EKS +E KK Q ++E +A+ L
Sbjct: 12 KKRPLPEIQEVEDVPRTRRPRRAAACTSFKEKSIRVCEKSATIEVKKQQIVEEEFLALRL 71
Query: 103 TARQDG--DRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVR 160
TA + DRP RRLNDF+L D +G+PQPLEMLEI D+F+SG ILP +D+EKEKGVR
Sbjct: 72 TALETDVEDRPTRRLNDFVLFDSDGVPQPLEMLEIHDIFVSGAILPSDVCTDKEKEKGVR 131
Query: 161 CEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKK 220
C FGR+E WSISGYEDGSPVIW+ST++ADYDC KPA+SY+K Y+ F+EKARA + VYKK
Sbjct: 132 CTSFGRVEHWSISGYEDGSPVIWISTELADYDCRKPAASYRKVYDYFYEKARASVAVYKK 191
Query: 221 LSKTSGGNSDCSIDELLAGVVRSMS-GSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSK 279
LSK+SGG+ D ++ELLA VVRSMS GSK F G +I DFVISQG+FI+NQL GLDET+K
Sbjct: 192 LSKSSGGDPDIGLEELLAAVVRSMSSGSKYFSSGAAIIDFVISQGDFIYNQLAGLDETAK 251
Query: 280 KNDQKFAELPVLVALKEESSKRENFVQVNA-ASLGGNLAIGSKVGDGDG-KMDQYGSSTC 337
K++ + E+PVLVAL+E+SSK + +Q S G + S+V + + DQ T
Sbjct: 252 KHESSYVEIPVLVALREKSSKIDKPLQRERNPSNGVRIKEVSQVAESEALTSDQLVDGT- 310
Query: 338 PADEDEDAKLARLLQEEELWXXXXX-XXXXXXXXXMNKFYIKINEDEIANDYPFPVFYRP 396
D+D + A LLQ+EE N FYIKINEDEIANDYP P +Y+
Sbjct: 311 ----DDDRRYAILLQDEENRKSMQQPRKNSSSGSASNMFYIKINEDEIANDYPLPSYYKT 366
Query: 397 SEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFG 456
SEEE DEL+ YD+ Y+ + LP RMLH+W+LYNSD R ISLELLPMK C+DIDV IFG
Sbjct: 367 SEEETDELILYDASYE-VQSEHLPHRMLHNWALYNSDLRFISLELLPMKQCDDIDVNIFG 425
Query: 457 SGKMISDEGSGFCL-DTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSS-MIFISIR 514
SG + D GS L D DS S + D G I+LS IKEWMIEFGS +I ISIR
Sbjct: 426 SGVVTDDNGSWISLNDPDSG------SQSHDPDGMCIFLSQIKEWMIEFGSDDIISISIR 479
Query: 515 TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
TD+AWYRLGKPSK YAPW++PVLKTARV ISI+T L+ ++RV+RLSF DV KRLS ++ +
Sbjct: 480 TDVAWYRLGKPSKLYAPWWKPVLKTARVGISILTFLRVESRVARLSFADVTKRLSGLQAN 539
Query: 575 QHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTXXXXXX 634
+YISSDP AVERY+VVHGQI+LQLFA YPD+ +K+C F++GL K+E+RHHT
Sbjct: 540 DKAYISSDPLAVERYLVVHGQIILQLFAVYPDDNVKRCPFVVGLASKLEDRHHTKWIIKK 599
Query: 635 XXXXXSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKXXXXXXXX 694
E+NLNPRA M PV SKRK MQATTTRL+NRIWGE+YSNYSPED
Sbjct: 600 KKISLKELNLNPRAGMAPVA-SKRKAMQATTTRLVNRIWGEFYSNYSPEDPLQATAAENG 658
Query: 695 XXXXXXXXXXXXXXXXXXXXXXXXXRQISCSVAVQ-------IKSRSTKKEITWEGECVR 747
+ V VQ I+ S K+EI W+GE +
Sbjct: 659 EDEVEEEGGNGEEEVEEEGENGLTEDTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLG 718
Query: 748 KS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQ 805
K+ G LY++A+V GE+V++G AV +EVD+ D++P IYFVEYMFE+T CK+ HG +Q
Sbjct: 719 KTSAGEPLYQQALVGGEMVAVGGAVTLEVDDPDEMPAIYFVEYMFESTDHCKMLHGRFLQ 778
Query: 806 RGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRA 865
RGS TVLGN ANERE+FL N+C +L+DIK +IRS PWGHQ+RK ADK+D A
Sbjct: 779 RGSMTVLGNAANERELFLTNECMTTQLKDIKGVASFEIRSRPWGHQYRKKNITADKLDWA 838
Query: 866 RAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGXXXXXXXXXXXXVH 925
RA ERK K LPTEYYCKSLY PERG FF LP+ +G G C +C ++
Sbjct: 839 RALERKVKDLPTEYYCKSLYSPERGGFFSLPLSDIGRSSGFCTSCKIREDEEKRSTIKLN 898
Query: 926 -SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGET-FKAGRNVGLKPYVVCQLLEIIVPK 983
SKT F EY V D+VY++P K +T FK+GRN+GL+ YVVCQLLEI VPK
Sbjct: 899 VSKTGFFINGIEYSVEDFVYVNPDSIGGLKEGSKTSFKSGRNIGLRAYVVCQLLEI-VPK 957
Query: 984 EPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
E ++A++ S VKVRRF+RP+D+SAEKAY SDI+E+Y+S++T ++ A+ GKCEVRKK+
Sbjct: 958 ESRKADLGSFDVKVRRFYRPEDVSAEKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKS 1017
Query: 1044 DIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
D+P I HIFFC+ D SKGSLKQLPA++K ++S+ + + R+KKGK +E
Sbjct: 1018 DMPLSREYPISDHIFFCDLFFDTSKGSLKQLPANMKPKFST--IKDDTLLRKKKGKGVES 1075
Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
E E E+ K +E LATLDIFAGCGGLS GL+++G+S KWAIEYEEPAG+AFK NH
Sbjct: 1076 EIESEIVKPVEPPKEIRLATLDIFAGCGGLSHGLKKAGVSDAKWAIEYEEPAGQAFKQNH 1135
Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTXXXXXXXXXXDENVINNLPLPGQVDFINGG 1223
PES + ++NCNVILRA+MEK GD +DCVST E + LPLPGQVDFINGG
Sbjct: 1136 PESTVFVDNCNVILRAIMEKGGDQDDCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGG 1195
Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
PPCQGFSGMNRFNQS+WSKVQCEMILAFLSFADYF+PRYFLLENVR FVSFNKGQTF+LT
Sbjct: 1196 PPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLT 1255
Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
LASLLEMGYQVRFGILEAGA+GVSQSRKRAFIWAA+P + LPEWPEPMHVF P+LKI L
Sbjct: 1256 LASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISL 1315
Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403
S Y+AVRSTA GAPFR +TVRDTIGDLP+V NG S+T EY+ VSWFQK IRGN
Sbjct: 1316 SQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSRTNKEYKEVAVSWFQKEIRGNT 1375
Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
LTDHI K MNELNLIRC+ IP RPGADWHDLP KV LS G+V ++IP+CLPNTA+RH
Sbjct: 1376 IALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLSDGRVEEMIPFCLPNTAERH 1435
Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
N WKGL+GRLDW+GNFPTS+TDPQPMGKVGMCFHP+Q RILTVRECARSQGFPDSY+F G
Sbjct: 1436 NGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAG 1495
Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
+I HKHRQIGNAVPP LAFALGRKLKEA+ K+S
Sbjct: 1496 NINHKHRQIGNAVPPPLAFALGRKLKEALHLKKS 1529
|
|
| UNIPROTKB|Q7Y1I7 MET1A "DNA (cytosine-5)-methyltransferase 1A" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2122313 AT4G08990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2140892 MEE57 "maternal effect embryo arrest 57" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q24K09 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P26358 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5GX68 DNMT1 "Cytosine-specific methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S3I5 DNMT1 "Cytosine-specific methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RHC6 DNMT1 "Cytosine-specific methyltransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q92072 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7Y1I7 | DNM1A_ORYSJ | 2, ., 1, ., 1, ., 3, 7 | 0.5907 | 0.9563 | 0.9757 | yes | no |
| B1Q3J6 | DNM1B_ORYSJ | 2, ., 1, ., 1, ., 3, 7 | 0.6014 | 0.9454 | 0.9633 | yes | no |
| P34881 | DNMT1_ARATH | 2, ., 1, ., 1, ., 3, 7 | 0.6288 | 0.9460 | 0.9608 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.37 | 0.991 |
| 3rd Layer | 2.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1558 | |||
| cd04708 | 202 | cd04708, BAH_plantDCM_II, BAH, or Bromo Adjacent H | 4e-95 | |
| pfam12047 | 143 | pfam12047, DNMT1-RFD, Cytosine specific DNA methyl | 3e-50 | |
| pfam12047 | 143 | pfam12047, DNMT1-RFD, Cytosine specific DNA methyl | 8e-47 | |
| pfam00145 | 320 | pfam00145, DNA_methylase, C-5 cytosine-specific DN | 4e-46 | |
| cd04712 | 130 | cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homolog | 2e-36 | |
| cd00315 | 275 | cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi | 4e-31 | |
| COG0270 | 328 | COG0270, Dcm, Site-specific DNA methylase [DNA rep | 1e-29 | |
| pfam01426 | 120 | pfam01426, BAH, BAH domain | 2e-29 | |
| smart00439 | 121 | smart00439, BAH, Bromo adjacent homology domain | 2e-27 | |
| smart00439 | 121 | smart00439, BAH, Bromo adjacent homology domain | 3e-23 | |
| TIGR00675 | 315 | TIGR00675, dcm, DNA-methyltransferase (dcm) | 4e-21 | |
| cd04370 | 123 | cd04370, BAH, BAH, or Bromo Adjacent Homology doma | 3e-20 | |
| pfam01426 | 120 | pfam01426, BAH, BAH domain | 1e-19 | |
| COG0270 | 328 | COG0270, Dcm, Site-specific DNA methylase [DNA rep | 2e-16 | |
| cd00315 | 275 | cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi | 1e-14 | |
| TIGR00675 | 315 | TIGR00675, dcm, DNA-methyltransferase (dcm) | 2e-14 | |
| cd04760 | 124 | cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homol | 5e-10 | |
| cd04370 | 123 | cd04370, BAH, BAH, or Bromo Adjacent Homology doma | 5e-09 | |
| PRK10458 | 467 | PRK10458, PRK10458, DNA cytosine methylase; Provis | 4e-05 | |
| cd04710 | 135 | cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Hom | 1e-04 | |
| cd04711 | 137 | cd04711, BAH_Dnmt1_II, BAH, or Bromo Adjacent Homo | 0.001 |
| >gnl|CDD|240059 cd04708, BAH_plantDCM_II, BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 4e-95
Identities = 124/204 (60%), Positives = 155/204 (75%), Gaps = 2/204 (0%)
Query: 930 FVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAE 989
FVY Y V D++Y+SP F ++ E TFKAGRNVGLK +VVCQ+LEI+V KE K+A+
Sbjct: 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQAD 60
Query: 990 VKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
V STQVKVRRF+RP+D+S EKAY SDIREVYYSE+T + VEA+ GKCEVRKK+D+P +
Sbjct: 61 VASTQVKVRRFYRPEDVSPEKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD 120
Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
AP IF+H+FFCE L+DP+KGSLKQLP +IK S S++A R++KGK G+ E +
Sbjct: 121 APVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYSTG-ASDSALRKRKGKGK-GDSESDS 178
Query: 1110 EKQGGASQENHLATLDIFAGCGGL 1133
E A +EN LATLDIFAGCGGL
Sbjct: 179 EAPVKAPKENRLATLDIFAGCGGL 202
|
DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 202 |
| >gnl|CDD|221394 pfam12047, DNMT1-RFD, Cytosine specific DNA methyltransferase replication foci domain | Back alignment and domain information |
|---|
| >gnl|CDD|221394 pfam12047, DNMT1-RFD, Cytosine specific DNA methyltransferase replication foci domain | Back alignment and domain information |
|---|
| >gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase | Back alignment and domain information |
|---|
| >gnl|CDD|240063 cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1 | Back alignment and domain information |
|---|
| >gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
| >gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|216495 pfam01426, BAH, BAH domain | Back alignment and domain information |
|---|
| >gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
| >gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) | Back alignment and domain information |
|---|
| >gnl|CDD|216495 pfam01426, BAH, BAH domain | Back alignment and domain information |
|---|
| >gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
| >gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
| >gnl|CDD|240107 cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) | Back alignment and domain information |
|---|
| >gnl|CDD|236696 PRK10458, PRK10458, DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240061 cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains | Back alignment and domain information |
|---|
| >gnl|CDD|240062 cd04711, BAH_Dnmt1_II, BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1558 | |||
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 100.0 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 100.0 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 100.0 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 100.0 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 100.0 | |
| cd04708 | 202 | BAH_plantDCM_II BAH, or Bromo Adjacent Homology do | 100.0 | |
| cd04760 | 124 | BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain | 99.97 | |
| PF12047 | 146 | DNMT1-RFD: Cytosine specific DNA methyltransferase | 99.97 | |
| PF12047 | 146 | DNMT1-RFD: Cytosine specific DNA methyltransferase | 99.96 | |
| cd04712 | 130 | BAH_DCM_I BAH, or Bromo Adjacent Homology domain, | 99.95 | |
| cd04711 | 137 | BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai | 99.93 | |
| cd04716 | 122 | BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom | 99.93 | |
| KOG0919 | 338 | consensus C-5 cytosine-specific DNA methylase [Tra | 99.92 | |
| cd04710 | 135 | BAH_fungalPHD BAH, or Bromo Adjacent Homology doma | 99.91 | |
| cd04709 | 164 | BAH_MTA BAH, or Bromo Adjacent Homology domain, as | 99.86 | |
| cd04714 | 121 | BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, | 99.86 | |
| PF01426 | 119 | BAH: BAH domain; InterPro: IPR001025 The BAH (brom | 99.85 | |
| cd04713 | 146 | BAH_plant_3 BAH, or Bromo Adjacent Homology domain | 99.85 | |
| cd04717 | 121 | BAH_polybromo BAH, or Bromo Adjacent Homology doma | 99.84 | |
| cd04370 | 123 | BAH BAH, or Bromo Adjacent Homology domain (also c | 99.84 | |
| smart00439 | 120 | BAH Bromo adjacent homology domain. | 99.83 | |
| cd04713 | 146 | BAH_plant_3 BAH, or Bromo Adjacent Homology domain | 99.82 | |
| cd04716 | 122 | BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom | 99.82 | |
| cd04715 | 159 | BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom | 99.81 | |
| PF01426 | 119 | BAH: BAH domain; InterPro: IPR001025 The BAH (brom | 99.81 | |
| cd04717 | 121 | BAH_polybromo BAH, or Bromo Adjacent Homology doma | 99.8 | |
| cd04714 | 121 | BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, | 99.78 | |
| cd04710 | 135 | BAH_fungalPHD BAH, or Bromo Adjacent Homology doma | 99.77 | |
| smart00439 | 120 | BAH Bromo adjacent homology domain. | 99.77 | |
| cd04370 | 123 | BAH BAH, or Bromo Adjacent Homology domain (also c | 99.76 | |
| cd04721 | 130 | BAH_plant_1 BAH, or Bromo Adjacent Homology domain | 99.71 | |
| cd04709 | 164 | BAH_MTA BAH, or Bromo Adjacent Homology domain, as | 99.71 | |
| cd04708 | 202 | BAH_plantDCM_II BAH, or Bromo Adjacent Homology do | 99.7 | |
| cd04721 | 130 | BAH_plant_1 BAH, or Bromo Adjacent Homology domain | 99.65 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 99.64 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 99.64 | |
| cd04715 | 159 | BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom | 99.58 | |
| cd04712 | 130 | BAH_DCM_I BAH, or Bromo Adjacent Homology domain, | 99.57 | |
| cd04719 | 128 | BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d | 99.47 | |
| cd04760 | 124 | BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain | 99.44 | |
| cd04720 | 179 | BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do | 99.42 | |
| cd04720 | 179 | BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do | 99.4 | |
| cd04711 | 137 | BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai | 99.36 | |
| KOG1886 | 464 | consensus BAH domain proteins [Transcription] | 99.32 | |
| cd04719 | 128 | BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d | 99.28 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 99.25 | |
| KOG1886 | 464 | consensus BAH domain proteins [Transcription] | 98.97 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.91 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 98.8 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 96.21 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.64 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 95.56 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.43 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 95.2 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 95.12 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 94.5 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 94.3 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 94.28 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 94.25 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 94.15 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 94.06 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 93.87 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 93.85 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 93.67 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 93.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 93.42 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 93.15 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 93.05 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 92.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 92.44 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 92.22 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 91.96 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 91.9 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 91.35 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 91.23 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 91.04 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 90.89 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 90.78 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 90.57 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 90.19 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 90.06 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 89.67 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 89.44 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 89.41 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 88.85 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 88.24 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 88.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 86.5 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 86.39 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 85.93 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 85.82 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 83.58 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 83.53 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 83.08 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 82.97 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 82.96 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 82.29 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 82.0 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 81.95 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 80.74 |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=530.72 Aligned_cols=329 Identities=35% Similarity=0.624 Sum_probs=210.3
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
++++||||||||+++||++||+.+ +||+|+|+.|++||++||| .+. ++||.+.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~~~-~~a~e~~~~a~~~y~~N~~--~~~--------------~~Di~~~---------- 53 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGFEV-VWAVEIDPDACETYKANFP--EVI--------------CGDITEI---------- 53 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTEEE-EEEEESSHHHHHHHHHHHT--EEE--------------ESHGGGC----------
T ss_pred CcEEEEccCccHHHHHHHhcCcEE-EEEeecCHHHHHhhhhccc--ccc--------------ccccccc----------
Confidence 589999999999999999999887 5999999999999999999 333 2665432
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchhH
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~f 1280 (1558)
... .+|. ++|||+||||||+||.+|+.+ ...+.|+.|+++|+++|+.++|++||||||+||++.+++.+|
T Consensus 54 ---~~~---~l~~--~~D~l~ggpPCQ~fS~ag~~~--~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~ 123 (335)
T PF00145_consen 54 ---DPS---DLPK--DVDLLIGGPPCQGFSIAGKRK--GFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVF 123 (335)
T ss_dssp ---HHH---HHHH--T-SEEEEE---TTTSTTSTHH--CCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHH
T ss_pred ---ccc---cccc--cceEEEeccCCceEecccccc--ccccccchhhHHHHHHHhhccceEEEecccceeecccccccc
Confidence 111 2332 699999999999999999733 346788999999999999999999999999999999889999
Q ss_pred HHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeecCCCCCC-CCCCCccccchhhhhhhcccccccccccccCCCC
Q 000407 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359 (1558)
Q Consensus 1281 ~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar~g~~lP-~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~ 1359 (1558)
..+++.|.++||+|.+.+|||++|||||+|+|+||||.+.+...+ .++.+.+.+
T Consensus 124 ~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~~~~~~~~~~~~~~~~------------------------- 178 (335)
T PF00145_consen 124 KEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVGIRKDLPLPPPFPIPKFDF------------------------- 178 (335)
T ss_dssp HHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEGGG--TSSCCGTTEEC-------------------------
T ss_pred ccccccccccceeehhccccHhhCCCCCceeeEEEEEECCCCCcccccccccccc-------------------------
Confidence 999999999999999999999999999999999999999887654 222222211
Q ss_pred CCcc-ccHHhHhcCCCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhchHHHHHHhhcCCCCCCCCCCCCCc
Q 000407 1360 PFRA-MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438 (1558)
Q Consensus 1360 p~~~-iTv~DaI~DLP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~~~l~l~R~~~Ip~~~G~dwr~Lp~ 1438 (1558)
|... .++.++|.|++.......... ..+....+.. +.. ....... ++..+. .
T Consensus 179 ~~~~~~~~~~~i~dl~~~~~~~~~~~-------~~~~~~~~~~-------~~~--~~~~~~~--------~~~~~~---~ 231 (335)
T PF00145_consen 179 PEPKDPTVSDAIRDLPDEPSPKDEDK-------YNFSDRVIED-------LNR--IRNNTIK--------PGKGIP---N 231 (335)
T ss_dssp -SSCG-SHHHHHGGGSTSCCECCCCC-------GBHSHCHHCS-------HCC--SHHHHHH--------HCCCCS---T
T ss_pred cccccccceeeEeecccccccccccc-------cccchhhhhh-------hcc--ccccccc--------cccchh---h
Confidence 1111 578888888876531110000 0000000000 000 0000000 011111 0
Q ss_pred cccccccCccccccccCCCCccccCCccccceecccCCCCCCccccCCCCCCCcc----ccccCCCCccccHHHHHhcCC
Q 000407 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG----MCFHPDQDRILTVRECARSQG 1514 (1558)
Q Consensus 1439 ~~v~l~~G~~~~l~p~~lp~~a~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g----~~lHP~q~R~LTVRE~ARLQG 1514 (1558)
...+..... ....+.....|.+..|.......++........+ ..+||.+.|.|||||||||||
T Consensus 232 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~R~LT~rE~aRLqg 299 (335)
T PF00145_consen 232 KISRNRIDK------------IEDLKGPSRTYRRSGRGEKMPPQIPTTGSTGKNGHRFRPFIHPEQNRRLTPREAARLQG 299 (335)
T ss_dssp HEECTSTTT------------TCECTTTCTCCTTSCTCC-BCCCCCSTSTTTTTHEHCCTEBTTSSSCB-BHHHHHHHTT
T ss_pred hhhhhhccc------------cccccccccccccccccccccccccccccccccCCccccccCCCCCCcCcHHHHHHhCC
Confidence 000000000 0000111112222222111111111111111122 268999999999999999999
Q ss_pred CCCCceecCCHHHHHHhcccCccHHHHHHHHHHHHH
Q 000407 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550 (1558)
Q Consensus 1515 FPD~y~F~Gs~~~~yrQIGNAVPppva~aIg~~L~~ 1550 (1558)
|||+|.|.|+..++|+||||||||+|+++||++|++
T Consensus 300 FPd~~~f~g~~~~~~~qiGNAVpp~v~~~I~~~i~~ 335 (335)
T PF00145_consen 300 FPDDFKFPGSKTQQYKQIGNAVPPPVAEAIAKAIKK 335 (335)
T ss_dssp SSTTS-S-SSHHHHHHHHHCS--HHHHHHHHHHHH-
T ss_pred CCCceEccCCHHHHhceECCCcCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999975
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
| >cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants | Back alignment and domain information |
|---|
| >cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
| >PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme | Back alignment and domain information |
|---|
| >PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme | Back alignment and domain information |
|---|
| >cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1 | Back alignment and domain information |
|---|
| >cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
| >cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants | Back alignment and domain information |
|---|
| >KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription] | Back alignment and domain information |
|---|
| >cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains | Back alignment and domain information |
|---|
| >cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins | Back alignment and domain information |
|---|
| >cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins | Back alignment and domain information |
|---|
| >PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation | Back alignment and domain information |
|---|
| >cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2 | Back alignment and domain information |
|---|
| >cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) | Back alignment and domain information |
|---|
| >smart00439 BAH Bromo adjacent homology domain | Back alignment and domain information |
|---|
| >cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants | Back alignment and domain information |
|---|
| >cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins | Back alignment and domain information |
|---|
| >PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation | Back alignment and domain information |
|---|
| >cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2 | Back alignment and domain information |
|---|
| >cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins | Back alignment and domain information |
|---|
| >cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains | Back alignment and domain information |
|---|
| >smart00439 BAH Bromo adjacent homology domain | Back alignment and domain information |
|---|
| >cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) | Back alignment and domain information |
|---|
| >cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins | Back alignment and domain information |
|---|
| >cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants | Back alignment and domain information |
|---|
| >cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins | Back alignment and domain information |
|---|
| >cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1 | Back alignment and domain information |
|---|
| >cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p | Back alignment and domain information |
|---|
| >cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
| >cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p | Back alignment and domain information |
|---|
| >cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p | Back alignment and domain information |
|---|
| >cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins | Back alignment and domain information |
|---|
| >KOG1886 consensus BAH domain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1886 consensus BAH domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1558 | ||||
| 3swr_A | 1002 | Structure Of Human Dnmt1 (601-1600) In Complex With | 1e-150 | ||
| 3pta_A | 956 | Crystal Structure Of Human Dnmt1(646-1600) In Compl | 1e-149 | ||
| 3av4_A | 1330 | Crystal Structure Of Mouse Dna Methyltransferase 1 | 1e-140 | ||
| 3pt9_A | 873 | Crystal Structure Of Mouse Dnmt1(731-1602) In The F | 1e-139 | ||
| 3pt6_A | 954 | Crystal Structure Of Mouse Dnmt1(650-1602) In Compl | 1e-139 | ||
| 4ft2_A | 784 | Crystal Structure Of Zea Mays Zmet2 In Complex H3(1 | 2e-52 | ||
| 4fsx_A | 784 | Crystal Structure Of Se-Substituted Zea Mays Zmet2 | 2e-49 | ||
| 3lx6_A | 410 | Crystal Structure Of Putative Dna Cytosine Methylas | 3e-09 | ||
| 3me5_A | 482 | Crystal Structure Of Putative Dna Cytosine Methylas | 3e-09 | ||
| 3ubt_Y | 331 | Crystal Structure Of C71s Mutant Of Dna Cytosine-5 | 1e-08 | ||
| 3g7u_A | 376 | Crystal Structure Of Putative Dna Modification Meth | 2e-08 | ||
| 3g7u_A | 376 | Crystal Structure Of Putative Dna Modification Meth | 1e-07 | ||
| 1dct_A | 324 | Dna (Cytosine-5) Methylase From Haeiii Covalently B | 5e-08 | ||
| 1g55_A | 343 | Structure Of Human Dnmt2, An Enigmatic Dna Methyltr | 5e-08 | ||
| 2uyh_A | 327 | Hhai Dna Methyltransferase S87q-Q237s Mutant Comple | 4e-06 | ||
| 1svu_A | 327 | Structure Of The Q237w Mutant Of Hhai Dna Methyltra | 4e-06 | ||
| 1mht_A | 327 | Covalent Ternary Structure Of Hhai Methyltransferas | 5e-06 | ||
| 1fjx_A | 327 | Structure Of Ternary Complex Of Hhai Methyltransfer | 5e-06 | ||
| 2zcj_A | 327 | Ternary Structure Of The Glu119gln M.Hhai, C5-Cytos | 1e-05 | ||
| 3epz_A | 268 | Structure Of The Replication Foci-Targeting Sequenc | 3e-05 | ||
| 2z6u_A | 327 | Ternary Structure Of The Glu119ala M.Hhai, C5-Cytos | 3e-05 | ||
| 2uz4_A | 327 | Hhai Dna Methyltransferase R165n Mutant Complex Wit | 3e-05 | ||
| 2uyc_A | 327 | Hhai Dna Methyltransferase R163n Mutant Complex Wit | 3e-05 | ||
| 2z6q_A | 327 | Ternary Structure Of Arg165ala M.Hhai C5-Cytosine D | 4e-05 | ||
| 2i9k_A | 327 | Engineered Extrahelical Base Destabilization Enhanc | 5e-05 | ||
| 2z6a_A | 327 | S-Adenosyl-L-Methionine-Dependent Methyl Transfer: | 6e-05 | ||
| 4dkj_A | 403 | Cpg Specific Methyltransferase In Complex With Targ | 1e-04 |
| >pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With Sinefungin Length = 1002 | Back alignment and structure |
|
| >pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With Dna Length = 956 | Back alignment and structure |
| >pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 Length = 1330 | Back alignment and structure |
| >pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free State Length = 873 | Back alignment and structure |
| >pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With Dna Length = 954 | Back alignment and structure |
| >pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2 Peptide And Sah Length = 784 | Back alignment and structure |
| >pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In Complex With Sah Length = 784 | Back alignment and structure |
| >pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From Shigella Flexneri 2a Str. 2457t Length = 410 | Back alignment and structure |
| >pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From Shigella Flexneri 2a Str. 2457t Length = 482 | Back alignment and structure |
| >pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5 Methyltransferase M.Haeiii Bound To Dna Length = 331 | Back alignment and structure |
| >pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification Methyltransferase Encoded Within Prophage Cp-933r (E.Coli) Length = 376 | Back alignment and structure |
| >pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification Methyltransferase Encoded Within Prophage Cp-933r (E.Coli) Length = 376 | Back alignment and structure |
| >pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To Dna Length = 324 | Back alignment and structure |
| >pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Length = 343 | Back alignment and structure |
| >pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 | Back alignment and structure |
| >pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna Methyltransferase: An Insight Into Protein-Protein Interactions Length = 327 | Back alignment and structure |
| >pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna And S-Adenosyl-L-Homocysteine Length = 327 | Back alignment and structure |
| >pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase Mutant (T250g) In Complex With Dna And Adohcy Length = 327 | Back alignment and structure |
| >pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 | Back alignment and structure |
| >pdb|3EPZ|A Chain A, Structure Of The Replication Foci-Targeting Sequence Of Human Dna Cytosine Methyltransferase Dnmt1 Length = 268 | Back alignment and structure |
| >pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 | Back alignment and structure |
| >pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 | Back alignment and structure |
| >pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 | Back alignment and structure |
| >pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna Methyltransferase With Unmodified Dna And Adohcy Length = 327 | Back alignment and structure |
| >pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination Of Dna Methyltransferase M.Hhai Length = 327 | Back alignment and structure |
| >pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates During Dna Cytosine Methylation Length = 327 | Back alignment and structure |
| >pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna Length = 403 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 | Back alignment and structure |
|---|
Score = 965 bits (2496), Expect = 0.0
Identities = 370/1369 (27%), Positives = 595/1369 (43%), Gaps = 205/1369 (14%)
Query: 326 DGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIA 385
++ DE E+ + ++ E Q +++ + KIN +
Sbjct: 11 PEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVIPKINSPKCP 70
Query: 386 N-----DYPFPVFYRPSEEEFDE--------LLAYDSDYD-SCDIDQLPRRMLHDWSLYN 431
D P + + E+ DE L YDS + P +S+Y
Sbjct: 71 ECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDSPMHRFTSFSVYC 130
Query: 432 SDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFP 491
S L ++ ++ ++++ G K I DE GG
Sbjct: 131 SRGHLCPVDTGLIEK--NVELYFSGCAKAIHDENP------------------SMEGGIN 170
Query: 492 -IYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIIT 548
L I +W + G + I T A Y L +PSK+Y P + + + ++ ++
Sbjct: 171 GKNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVE 230
Query: 549 MLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQ 608
L+ + D+I ++ + E ++ H Q V+ Y DE
Sbjct: 231 FLQNN---PDAVYEDLINKIET---TVPPSTINVNRFTEDSLLRHAQFVVSQVESY-DEA 283
Query: 609 IKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRL 668
I L M H + ++ R + +ATTT+L
Sbjct: 284 KDDDETPIFLSPCMRALIHLAGVSLGQR------RATRRVMGATKE-KDKAPTKATTTKL 336
Query: 669 INRIWGEYYSNYSPEDGKEETACE------------------------------------ 692
+ +I+ ++S + KE+
Sbjct: 337 VYQIFDTFFSEQIEKYDKEDKENAMKRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSK 396
Query: 693 -ANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVR-KSG 750
A E DD EE E + K + K I+W G+ ++ +
Sbjct: 397 QACLKRRCPNLAVKEADDDEEADDDVSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEEN 456
Query: 751 LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
Y+K + E++ +G V V D+ + + V ++E G +FH G+ T
Sbjct: 457 RTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDT 516
Query: 811 VLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEER 870
VLG T++ E+FL +C +++L I V V + + + AE+
Sbjct: 517 VLGATSDPLELFLVGECENMQLSYIHSKVKVIYK--APSENWAMEGGTDPETTLPGAEDG 574
Query: 871 KKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS--CHACGTKESEKEKETFKV---- 924
K Y+ + Y E F P C +C ++KE KV
Sbjct: 575 K------TYFFQLWYNQEYARFESPPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQI 628
Query: 925 ------HSKTSFVYGTAEYFVHDYVYISPHHFTWD------------------------K 954
+S Y + D VY+ P FT++ +
Sbjct: 629 EEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYR 688
Query: 955 AEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDI--SAEKAY 1012
+ K +PY + ++ EI K+ + ++++ +F+RP++ S +Y
Sbjct: 689 KYSDYIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSY 748
Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP--AIFQHIFFCEHLHDPSKGS 1070
+DI +Y+S+E ++ + G+C V D+ F+ ++ +
Sbjct: 749 HTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKN 808
Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
+ P H + + + KGK E ++ A + L TLD+F+GC
Sbjct: 809 FEDPPNHARSPGNK-------GKGKGKGKGKGKHQVSEPKEPEAAIKLPKLRTLDVFSGC 861
Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
GGLSEG Q+GIS T WAIE +PA +AF+LN+P + + +CNV+L+ VM
Sbjct: 862 GGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGE------ 915
Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
+ ++ LP G V+ + GGPPCQGFSGMNRFN T+SK + ++++
Sbjct: 916 ------------VTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVS 963
Query: 1251 FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSR 1310
FLS+ DY++PR+FLLENVRNFVS+ + +LTL L+ MGYQ FG+L+AG +GV+Q+R
Sbjct: 964 FLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 1023
Query: 1311 KRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQ-YSAVRSTANGAPFRAMTVRDT 1369
+RA I AA+P + LP +PEP+HVFA ++ + + + + + + + PFR +TVRDT
Sbjct: 1024 RRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDT 1083
Query: 1370 IGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPK 1427
+ DLP + NGAS + + Y +P+SWFQ+++RG+ +L DHI K+M+ L R + IP
Sbjct: 1084 MSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPL 1143
Query: 1428 RPGADWHDLPDEKVKLSTG----------------------------------------Q 1447
PG+DW DLP+ +V+L G Q
Sbjct: 1144 FPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQ 1203
Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
LIPWCLP+T RHN W GL+GRL+W+G F T++T+P+PMGK G HP+Q R+++VR
Sbjct: 1204 FSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVR 1263
Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
ECARSQGFPDSY+F G+I +HRQ+GNAVPP LA A+G ++K + S
Sbjct: 1264 ECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCLLSSA 1312
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 | Back alignment and structure |
|---|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 | Back alignment and structure |
|---|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376 | Back alignment and structure |
|---|
| >3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens} Length = 268 | Back alignment and structure |
|---|
| >3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens} Length = 268 | Back alignment and structure |
|---|
| >1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Length = 324 | Back alignment and structure |
|---|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 | Back alignment and structure |
|---|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Length = 482 | Back alignment and structure |
|---|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Length = 482 | Back alignment and structure |
|---|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 | Back alignment and structure |
|---|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 | Back alignment and structure |
|---|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 | Back alignment and structure |
|---|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 | Back alignment and structure |
|---|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Length = 163 | Back alignment and structure |
|---|
| >2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 230 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1558 | ||||
| d1dcta_ | 324 | c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a | 3e-36 | |
| d1g55a_ | 343 | c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: | 3e-36 | |
| d2c7pa1 | 327 | c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu | 6e-23 | |
| d2c7pa1 | 327 | c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu | 5e-15 |
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Score = 138 bits (348), Expect = 3e-36
Identities = 85/429 (19%), Positives = 138/429 (32%), Gaps = 110/429 (25%)
Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
+ +F+G GGL G Q++G A EY++ + ++ NH L+
Sbjct: 4 ISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHSAKLI--------------- 47
Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
GD + + D I GGPPCQ +S +
Sbjct: 48 KGDISK-------------ISSDEFPK------CDGIIGGPPCQSWSEGGSLRGIDDPR- 87
Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
++ ++ +P +FL ENV+ ++ + + + GY V +L A
Sbjct: 88 -GKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNAND 146
Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
+GV+Q RKR F + P H
Sbjct: 147 YGVAQDRKRVFYIGFRKELNINYLPPIPH----------------------------LIK 178
Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
T +D I DL ++P+ K + + + + I
Sbjct: 179 PTFKDVIWDLK--------------DNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMS 224
Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
+ R + Q G +L + +
Sbjct: 225 RNRVRQWNEPA---------------------------FTVQASGRQCQLHPQAPVMLKV 257
Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH-GSIQHKHRQIGNAVPPTLAF 1542
+ G R LTVRECAR QGFPD + FH S+ ++ IGNAVP LA+
Sbjct: 258 SKNLNKFVEG---KEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAY 314
Query: 1543 ALGRKLKEA 1551
+ + +K A
Sbjct: 315 EIAKTIKSA 323
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 | Back information, alignment and structure |
|---|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 | Back information, alignment and structure |
|---|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1558 | |||
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 100.0 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 100.0 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m4za_ | 217 | Origin-recognition complex protein 120kDa subunit, | 99.54 | |
| d1m4za_ | 217 | Origin-recognition complex protein 120kDa subunit, | 99.4 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.61 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.57 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.39 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.33 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.28 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.14 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.09 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 96.99 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.88 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 96.85 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.78 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 96.7 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 94.9 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 92.24 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 91.48 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 90.94 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 89.89 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 88.93 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 88.23 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 84.68 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 84.4 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 83.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 81.86 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 81.14 |
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=100.00 E-value=0 Score=481.53 Aligned_cols=315 Identities=24% Similarity=0.388 Sum_probs=229.0
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 46874065123482389999850699576999827876999999819998211011367999989641998611340268
Q 000407 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196 (1558)
Q Consensus 1117 ~~~kL~~lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~ 1196 (1558)
+..+|+++||||||||+++||+++|+.+ +||+|+|+.|++||++|||++.+ +|+.+
T Consensus 8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~-v~a~e~d~~a~~~~~~N~~~~~~----------------~Di~~------- 63 (327)
T d2c7pa1 8 QLTGLRFIDLFAGLGGFRLALESCGAEC-VYSNEWDKYAQEVYEMNFGEKPE----------------GDITQ------- 63 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTCEE-EEEECCCHHHHHHHHHHHSCCCB----------------SCGGG-------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCEE-EEEEECCHHHHHHHHHHCCCCCC----------------CCHHC-------
T ss_conf 6999818997806568999999879969-99994899999999987799986----------------74312-------
Q ss_pred HHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 99984113211127999996007982278987554556799875334565899999987441994999703566423566
Q 000407 1197 AELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276 (1558)
Q Consensus 1197 ~el~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fiLENV~glls~~~ 1276 (1558)
+.. ..+| ++|+|+||||||+||.+|+.+. ..+.++.|++.++++|+.++|++|+||||+||++.+.
T Consensus 64 ------~~~---~~~~---~~Dll~ggpPCq~fS~ag~~~g--~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~ 129 (327)
T d2c7pa1 64 ------VNE---KTIP---DHDILCAGFPCQAFSISGKQKG--FEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDN 129 (327)
T ss_dssp ------SCG---GGSC---CCSEEEEECCCTTTCTTSCCCG--GGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGG
T ss_pred ------CCH---HHCC---EEEEEECCCCCCHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHCC
T ss_conf ------763---0242---2334302555420455544247--7554224799999987526983896354102332011
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 446999999884089189999985378898877648999960699999--999987655640124441145432100123
Q 000407 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL--PEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354 (1558)
Q Consensus 1277 g~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~l--P~~P~PtH~f~~~~l~~~l~~~~~~~~~~~ 1354 (1558)
+..|..++..|..+||++.+.+|||.+||+||+|+|+|+||++.+... ..+|.|.+.
T Consensus 130 ~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~~~p~p~~~--------------------- 188 (327)
T d2c7pa1 130 GNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFEL--------------------- 188 (327)
T ss_dssp GHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCC---------------------
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCHHHHHEEEEECCCCCCCCCCCCCCCCC---------------------
T ss_conf 04667766678766984014672389808984654432531236755331122222234---------------------
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 58999986554876713999899999864323478971568996711743211013421108778874047799999988
Q 000407 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434 (1558)
Q Consensus 1355 ~~~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr 1434 (1558)
..+++|.+........ ....... +.......+.
T Consensus 189 --------~~~i~d~l~~~~~~~~-------------------~~~~~~~--------------------~~~~~~~~~~ 221 (327)
T d2c7pa1 189 --------NTFVKDLLLPDSEVEH-------------------LVIDRKD--------------------LVMTNQEIEQ 221 (327)
T ss_dssp --------CCCGGGTCCCGGGTGG-------------------GEECCTT--------------------CEECSCCCSS
T ss_pred --------CCCCCCCCCCCCCHHH-------------------HCCCCCC--------------------CCCCHHHHHC
T ss_conf --------5433331134641233-------------------1134210--------------------1000012210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 897211023568422355667877533477655641102688998731257898-8886520169997446698887418
Q 000407 1435 DLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP-MGKVGMCFHPDQDRILTVRECARSQ 1513 (1558)
Q Consensus 1435 ~lp~~~v~~~~G~~~~l~p~~lp~~~~r~~~~~~~YgRl~~d~~~pTi~T~~~p-~gk~g~~lHP~q~R~LTvRE~ARlQ 1513 (1558)
..+. ..+.. ... ...... ....+..+.+|.++.... ..+.+..+|+.+.|.||+|||||||
T Consensus 222 ~~~~-~~~~~----------~~~----~~~~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~R~lT~rE~arLq 283 (327)
T d2c7pa1 222 TTPK-TVRLG----------IVG----KGGQGE---RIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVM 283 (327)
T ss_dssp CCSS-CCEEE----------EST----TCCTTC---EEEETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHT
T ss_pred CCCH-HHHHC----------CCC----CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 4612-33203----------146----788776---45456556521104676424788723689967578899999968
Q ss_pred CCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999983625897889876245753899999999999999933
Q 000407 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1514 GFPD~y~f~G~~~~~ykQIGNAVPppla~AIg~~I~~aL~~~ 1555 (1558)
||||+|.|.|+.+++|+||||||||+|+++||+.|++.|..+
T Consensus 284 gFPd~f~~~~s~~~~~~~iGNAVp~~v~~~I~~~I~~~L~~k 325 (327)
T d2c7pa1 284 GYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFK 325 (327)
T ss_dssp TCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 799996859898999948559997999999999999997579
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|