Citrus Sinensis ID: 000430

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------152

MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

ccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEEEEccccEEEEECccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccccccccEEEEEEccccccccccccccccEEEEccccccHHHHHHHcccccccCEEEEcccccccccccccccEEEEEEcccccEEEcccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHccccEEEECccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccCEEEccccccccccEEEEEcccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEcEEcccccccccEEEEEEEECccccccccEEEEEEcEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccc

******************************************VGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEED*****************************************************************************************************************************************************************************************************************************************FEV*DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEES*I**MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR***************GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY********************EELTNED********************YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP***P*AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS*****G**QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP******************LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVS*****PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

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MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVxxxxxxxxxxxxxxxxxxxxxISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVxxxxxxxxxxxxxxxxxxxxxMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA polymerase alpha catalytic subunit	Polymerase alpha in a complex with DNA primase is a replicative polymerase.	probable	O48653
DNA polymerase alpha catalytic subunit	Polymerase alpha in a complex with DNA primase is a replicative polymerase.	probable	Q9FHA3
DNA polymerase alpha catalytic subunit	Plays an essential role in the initiation of DNA replication. During the S phase of the cell cycle, the DNA polymerase alpha complex (composed of a catalytic subunit POLA1/p180, a regulatory subunit POLA2/p70 and two primase subunits PRIM1/p49 and PRIM2/p58) is recruited to DNA at the replicative forks via direct interactions with MCM10 and WDHD1. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. These primers are initially extended by the polymerase alpha catalytic subunit and subsequently transferred to polymerase delta and polymerase epsilon for processive synthesis on the lagging and leading strand, respectively. The reason this transfer occurs is because the polymerase alpha has limited processivity and lacks intrinsic 3' exonuclease activity for proofreading error, and therefore is not well suited for replicating long complexes.	probable	P09884

Prediction of Enzyme Commission Number

EC Number	Description	Confidence Level
2.-.-.-	Transferases.	probable
2.7.-.-	Transferring phosphorous-containing groups.	probable
2.7.7.-	Nucleotidyltransferases.	probable
2.7.7.7	DNA-directed DNA polymerase.	probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3IAY, chain A
Confidence level:very confident
Coverage over the Query: 331-414,440-581,592-605,623-840,883-1280
View the alignment between query and template
View the model in PyMOL

Template: 1QHT, chain A
Confidence level:very confident
Coverage over the Query: 527-538,558-840,879-1158,1171-1177,1188-1242,1254-1275
View the alignment between query and template
View the model in PyMOL

Template: 2GV9, chain A
Confidence level:confident
Coverage over the Query: 354-382,398-589,603-702,716-841
View the alignment between query and template
View the model in PyMOL

Template: 3FLO, chain B
Confidence level:confident
Coverage over the Query: 1313-1351,1364-1503
View the alignment between query and template
View the model in PyMOL