Citrus Sinensis ID: 000430

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------152

MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

ccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccccccccEEEEEEccccccccccccccccEEEEccccccHHHHHHHcccccccEEEEEcccccccccccccccEEEEEEcccccEEEcccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEcccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEcEEcccccccccEEEEEEEEEccccccccEEEEEEcEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccHHHHHHHHHHHcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccc

ccccccccccccHHccccHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHcccHHHHHHHHHHHHHccccEEEEcccccEcccccccccccccccccccccccccccccccccccccccHcccccccccccHHHHHHHccccccHHHHcccHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEcccEEEEEEEcccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEcEEEEEEEEEcccccccccEEEEEEEcccccccccccccccHHHHccccHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEEEcccccEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccccHHHcccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEEcccccHHHHHHHcEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHHcHEEEEccHHHHHHHHHHcccEEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHcHEEEEHHccccHHHccccccccHHHHHHHHHHcccccccccccEEEEEEEEcccccccccccHHHHHccHHHHHcccccccccHHHHHHHcccHHHHHHHcccccccHHHHHHHHcccHHHEEEEEccccccccccccccccccHHHHcccccEEEEccccccEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccEEEEEEEcccccccccccccccccEEEEEEccHHHHHHHHHHHHHHccHHHHHHHcccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccEEEEc

mkdeqpvvagrrrsRGAEASARAEALERLKALRrggrrsgdsvgyniklenpiydtvaeDEYDALVARRREEARgfivdddglgygdegqeedwsvaglpsssddesldgQRSIKKQRIEKrgkkennqnvrkpnpsLTAAAAMMGKQRLSAMLTSTAMfkkskdekvkESESVIDEVLaefapdeadrerRRRSVSSNIKSFVSVNsvktnsqlvtnstnsvkeNSDLINNFVQIqncdvveeskelkwesdnsteltkrdnfVEVKEKVKDEVNEDVKECKKLNAkistekdpllsatagwkevsggnmvldegksglncqesefevdddgslpfYILDAHEqlsganmgtLYLFgkvkagsthhsCCVVVKNMQRcvyaipngplfqtdeIMKLEKDaeesrispmAFRKKLQDVALGLKTEIANQLLNLnvsnyivspvkrryafgqaeipagenyvlkinypfkdpplpadlkgenfcslLGTHSSALELFLVKRkvkgpswlsiskfsscpapqrvswckyeitvdspkdirvsssskhvaevppvTVTAINLKTVFNKRQDVNEIVSASVVCCHkakidtpmlasewkkpgmlsHFTVVRkldggifpmgfnkeatdrnskagsnvlCCESSERALLNRLMIELYKLdsdvlvghnisgfDLDVLLHRAqvcrvpssmwskigrlkrsempklrkgrtifgsgaspgimSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLnkdrkevgphdVLKMFQTLESLMELIEYGETDAWLSMELMFHLsvlpltrqltnisgnlwgkTLQGARAQRVEYLLLHAFRakkyivpdkftyVKETKMAkqrsnhgvedrnveeltnedanfdndtshndhrkgkrgpayagglvlepkkglydkYILLLDFNSLYPSIIQEYNICFttverspdglvphlpsskttgvLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSmygclgfsnsrfyAKPLAELITQQGREILRSTVDLVQNNlnleviygdtdsimiHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVqfkdgmpyevIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKtltkppeaypdaknqpHVQVALRLKqsgystgcsagdtvpyiicceqgtssgssvgiaqrarhpdelkkgdgkwmiDIDYYASQQIHPVVSRLCasiegtsperladclgldpskfqskpsetmssdpsssllfavgdeeryrgceplilscpscsstfdcpavcssicmsvsekpskpeteynfwrtlrcpkcpeeveagrispgmianqVKRQADGFVSMYYKglmmcddetckyttcslnlrligdaergtvcpnyprcngrlvrKYTEADLYKQLTYFCHLLDTQRGIEKMEISakiplekelnkiRPVVALAASTVQRIRERCAYGWVKLNDIAISV

mkdeqpvvagrrrsrgaeasarAEALERLkalrrggrrsgdsvgyniklenpiydtvaEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVaglpsssddesldgqrsikkqriekrgkkennqnvrkpnpsLTAAAAMMGKQRLSAMLTSTAMfkkskdekvkesesvidevlaefapdeadrerrrrsvssniksfvsvnsvktnsqlvtnstnsvkensDLINNFVQIQNCDVVEESkelkwesdnsteltkrdnfvevkekvkdevnedvkeckklnakistekdpllsatagwkevsggnMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIpngplfqtdEIMKLEKDAeesrispmaFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSiskfsscpapqrvSWCKYEITVdspkdirvsssskhvaevppvtvTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEatdrnskagsnvLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVcrvpssmwskigrlkrsempklrkgrtifgsgaspgIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKtqlnkdrkevgphDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHafrakkyivpdKFTYVKETKmakqrsnhgvedrnveeltnedanfdndtshndhrkgkrgpayagglvlePKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVphlpsskttgvlpeLLKNLVQRRRMVKTWMKtasglkiqQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYaavkvqfkdgmpyevieRKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRarhpdelkkgdGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQskpsetmssdpssSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICmsvsekpskpeteynfWRTLRCPKCPEEVeagrispgmianqvkrQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIgdaergtvcpnyprcngRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIplekelnkirpVVALAAStvqrirercaygwvklndiaisv

MKDEQPVVagrrrsrgaeasaraealerlkalrrggrrsgdsvgYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFkkskdekvkesesvIDEVLAEFAPDEADrerrrrsvssNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFvevkekvkdevnedvkeckkLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSgiddiakakaiagkVIQEVNKKYKCLEIDLDGlykrmlllkkkkyaavkvQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQskpsetmssdpsssLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

******************************************VGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY***********************************************************************************************************************************************LINNFVQIQNCDVVE*********************************************************AGWKEV********************FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK*************AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDS************VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNK**********SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL**********GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK*********************************************YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHL***KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ****SGQVALEKYVITKTL***************VQVALRLKQSGYSTGCSAGDTVPYIICCEQ***********************DGKWMIDIDYYASQQIHPVVSRLCASIEGT*******C***********************LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSV*********EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI**

**********************************************IKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEED*********************************************************************************************************************************************************************************************************************************************DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEES*I**MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR******************PGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY********************EELTNED***********************GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT*********IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP***P*AKNQPHVQVALRLKQ******CSAGDTVPYIICCEQGTS*****G**QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP*************************EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVS*****PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI***************NKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

**********************AEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVA****************IKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMF************SVIDEVLAEFAP*************SNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK************EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA**********VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET*************RNVEELTNEDANFDND**********RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF*************SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMS**********EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

*****************************KALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWS********************************************************************KDEKVKESESVIDEVLAEFA**********************************************************************************************************************************************EFEV*DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI*KLEKD***********RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK*******GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY***********************************************YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG****SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS*********SLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVxxxxxxxxxxxxxxxxxxxxxISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVxxxxxxxxxxxxxxxxxxxxxMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1517	2.2.26 [Sep-21-2011]
Q9FHA3		1524	DNA polymerase alpha cata	yes	no	0.989	0.984	0.625	0.0
O48653		1534	DNA polymerase alpha cata	yes	no	0.984	0.973	0.641	0.0
P09884		1462	DNA polymerase alpha cata	yes	no	0.893	0.926	0.356	0.0
O89042		1451	DNA polymerase alpha cata	yes	no	0.905	0.946	0.345	0.0
Q9DE46		1458	DNA polymerase alpha cata	N/A	no	0.711	0.740	0.388	0.0
P33609		1465	DNA polymerase alpha cata	yes	no	0.893	0.925	0.342	0.0
Q94636		1492	DNA polymerase alpha cata	N/A	no	0.872	0.886	0.328	0.0
Q27152		1513	DNA polymerase alpha cata	N/A	no	0.707	0.709	0.360	0.0
P28040		1405	DNA polymerase alpha cata	yes	no	0.711	0.768	0.353	0.0
P26019		1488	DNA polymerase alpha cata	yes	no	0.694	0.708	0.364	1e-176

>sp\|Q9FHA3\|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana GN=POLA PE=3 SV=2	Back alignment and function desciption

 Score = 1920 bits (4973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 962/1538 (62%), Positives = 1197/1538 (77%), Gaps = 37/1538 (2%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M  +     GRRRSRGAEAS+R + LERLKA+R+GG RS    GY+I+L+ PI+DTV ++
Sbjct: 1    MSGDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDE 60

Query: 61   EYDALVARRREEARGFIVDDD---GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQ 117
            EYDALV+RRREEARGF+V+D     LGY DEG+EEDWS    P S+D+    G+ S + +
Sbjct: 61   EYDALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLK 120

Query: 118  RIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDE 177
            + +K  ++     V+K NP+L AAA + G+ RLS+M TS++ FKK K+    + E ++DE
Sbjct: 121  KKKKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILDE 179

Query: 178  VLAEFAPDEADRERRRR---------SVSSNIKSFVSVNSVKTNSQLVTNST---NSVKE 225
            ++A+  PDE+DR++  R         ++  N K F   +S+       T ST   +SV  
Sbjct: 180  IIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKESEPTPSTYEGDSVSM 239

Query: 226  NSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV-KEKVKDEVNEDVKECKK 284
            +++L+      ++  +  E+ EL       +++ K D   ++ K +VK E+   VKE   
Sbjct: 240  DNELMKEEDMKESEVIPSETMELL-----GSDIVKEDGSNKIRKTEVKSELG--VKEVFT 292

Query: 285  LNAKIST-EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQ-ESEFEVDDDGSLPFYILDA 342
            LNA I   EKD  LSATAGWKE  G     +    G + + ++EF++D DGSL F+ILDA
Sbjct: 293  LNATIDMKEKDSALSATAGWKEAMGKVGTENGALLGSSSEGKTEFDLDADGSLRFFILDA 352

Query: 343  HEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
            +E+  GA+MGT+YLFGKVK G T+ SCCVVVKN+QRCVYAIPN  +F + E++ LE++ +
Sbjct: 353  YEEAFGASMGTIYLFGKVKMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSHELIMLEQEVK 412

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVL 462
            +SR+SP +FR KL ++A  LK EIA +LL LNVSN+ ++PVKR YAF + ++PAGE YVL
Sbjct: 413  DSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERPDVPAGEQYVL 472

Query: 463  KINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV 522
            KINY FKD PLP DLKGE+F +LLG+H+SALE F++KRK+ GP WL IS FS+C   + V
Sbjct: 473  KINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISSFSTCSPSEGV 532

Query: 523  SWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHK 582
            SWCK+E+TV SPKDI +  S + V   PP  VTAINLKT+ N++Q+++EIVSASV+C H 
Sbjct: 533  SWCKFEVTVQSPKDITILVSEEKVVH-PPAVVTAINLKTIVNEKQNISEIVSASVLCFHN 591

Query: 583  AKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERA 642
            AKID PM A E K+ G+LSHFTVVR  +G  +P+G+ KE +DRNSK G NVL  E+SERA
Sbjct: 592  AKIDVPMPAPERKRSGILSHFTVVRNPEGTGYPIGWKKEVSDRNSKNGCNVLSIENSERA 651

Query: 643  LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK 702
            LLNRL +EL KLDSD+LVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL K
Sbjct: 652  LLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-K 710

Query: 703  GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
            G + +GSGA+PG+MSCIAGRLLCDT LCSRDLL+EVSYSLT L+KTQLN+DRKE+ P+D+
Sbjct: 711  GNSNYGSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDI 770

Query: 763  LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
             KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGARAQR+
Sbjct: 771  PKMFQSSKTLVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRI 830

Query: 823  EYLLLHAFRAKKYIVPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            EY LLH F +KK+I+PDK +  +KE K +K+R ++  EDRNV+EL + D   +ND S   
Sbjct: 831  EYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDEL-DADLTLENDPSKGS 889

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K+GPAYAGGLVLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTT+ RS DG VP 
Sbjct: 890  --KTKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRSEDG-VPR 946

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            LPSS+T G+LP+L+++LV  R+ VK  MK  +GLK  +LDI+QQALKLTANSMYGCLGFS
Sbjct: 947  LPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLKYWELDIRQQALKLTANSMYGCLGFS 1006

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            NSRFYAKPLAELIT QGR+IL+ TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI + KAI 
Sbjct: 1007 NSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIK 1066

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
             KVIQEVNKKY+CL+ID DG+YKRMLLL+KKKYAAVK+QFKDG P E IERKG+DMVRRD
Sbjct: 1067 SKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGKPCEDIERKGVDMVRRD 1126

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WSLLSKE+GD CLS+IL   SCEDVVE+IHN LMK++E+MR+GQVALEKYVITKTLTKPP
Sbjct: 1127 WSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKTLTKPP 1186

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT-SSGSSVGIAQRARHPD 1240
             AYPD+K+QPHVQVALR++Q GY  G +A DTVPYIIC EQG  SS SS GIA+RARHPD
Sbjct: 1187 AAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPD 1246

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
            E+K    +W++DIDYY +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++SK ++  S
Sbjct: 1247 EVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSKYRSKSNDATS 1306

Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN- 1359
            SDPS+SLLFA  DEERY+ CEPL L+CPSCS+ F+CP++ SS+C S+S+KP+ PETE + 
Sbjct: 1307 SDPSTSLLFATSDEERYKSCEPLALTCPSCSTAFNCPSIISSVCASISKKPATPETEESD 1366

Query: 1360 --FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSL 1417
              FW  L CPKC +E   G ISP MIANQVKRQ DGFVSMYYKG+M+C+DE+CK+TT S 
Sbjct: 1367 STFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVSMYYKGIMVCEDESCKHTTRSP 1426

Query: 1418 NLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
            N RL+G+ ERGTVCPNYP CNG L+RKYTEADLYKQL+YFCH+LDTQ  +EKM++  +I 
Sbjct: 1427 NFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCSLEKMDVGVRIQ 1486

Query: 1478 LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515
            +EK + KIRP V  AA+  +  R+RCAYGW++L DI I
Sbjct: 1487 VEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1524

Polymerase alpha in a complex with DNA primase is a replicative polymerase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|O48653\|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2	Back alignment and function description

>sp\|P09884\|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2	Back alignment and function description

>sp\|O89042\|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus norvegicus GN=Pola1 PE=2 SV=1	Back alignment and function description

>sp\|Q9DE46\|DPOLA_XENLA DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1 PE=2 SV=1	Back alignment and function description

>sp\|P33609\|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1 SV=2	Back alignment and function description

>sp\|Q94636\|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1	Back alignment and function description

>sp\|Q27152\|DPOLA_OXYTR DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3 SV=1	Back alignment and function description

>sp\|P28040\|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1	Back alignment and function description

>sp\|P26019\|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster GN=DNApol-alpha180 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1517
255565234		1526	DNA polymerase alpha catalytic subunit,	0.988	0.982	0.742	0.0
359480801		1522	PREDICTED: DNA polymerase alpha catalyti	0.986	0.982	0.743	0.0
449463959		1547	PREDICTED: DNA polymerase alpha catalyti	0.986	0.967	0.695	0.0
380710181		1561	DNA polymerase alpha catalytic subunit [	0.984	0.957	0.668	0.0
356496908		1512	PREDICTED: DNA polymerase alpha catalyti	0.982	0.985	0.679	0.0
224096742		1312	predicted protein [Populus trichocarpa]	0.827	0.956	0.778	0.0
334188684		1524	DNA polymerase alpha catalytic subunit [	0.989	0.984	0.625	0.0
85541645		1534	RecName: Full=DNA polymerase alpha catal	0.984	0.973	0.641	0.0
218189439		1532	hypothetical protein OsI_04575 [Oryza sa	0.983	0.973	0.640	0.0
56784778		1532	putative DNA polymerase alpha catalytic	0.983	0.973	0.639	0.0

>gi\|255565234\|ref\|XP_002523609.1\| DNA polymerase alpha catalytic subunit, putative [Ricinus communis] gi\|223537171\|gb\|EEF38804.1\| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2283 bits (5915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1147/1544 (74%), Positives = 1315/1544 (85%), Gaps = 45/1544 (2%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M++++PV A RRR+RG EA+ARA ALERLKALR+GGRRS +  GY+IK+E PI+DTV+ED
Sbjct: 1    MENDEPVTAARRRTRGPEATARASALERLKALRQGGRRSENGAGYDIKMETPIFDTVSED 60

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +YD LVA+RR EA+GFIVDDDGLGYGDEG+EEDWS AGLP SSD+   DG  +  K R +
Sbjct: 61   DYDKLVAQRRLEAQGFIVDDDGLGYGDEGEEEDWSQAGLPPSSDES--DGGETNNKNRSK 118

Query: 121  KRGKKENNQN----VRKPNPSLTAAAAM-MGKQRLSAMLTSTAMFKKSKDEKVKESESVI 175
            ++  ++  +     ++K N SL+AAAA  MGKQR+S+M TST    K++D+ + + E+++
Sbjct: 119  RKKTEKKEKGKSKVIKKVNSSLSAAAAALMGKQRISSMFTSTVF--KNRDKNL-DCENIV 175

Query: 176  DEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQ 235
            D+V+AEFAPDE DRERRR  V   +K    V ++  N  L     N         +N V+
Sbjct: 176  DDVIAEFAPDENDRERRR-RVQLPVKIEGDVVNLTVNGGLGRGVMNDC-------DNVVK 227

Query: 236  I-QNCDV------VEESKELKWESDNSTELTKRDNFVEVKEK---VKDEVNEDVKECKKL 285
            + QNC V      V E+KE++   D      KR+   EVKE    VK+E   +    + L
Sbjct: 228  LGQNCSVDEREGMVMEAKEVEKGVDYDE---KREILAEVKETAVVVKEETESE--RGRVL 282

Query: 286  NAKISTE-KDPLLSATAGWKEV-SGGNM----VLDEGKSGLNCQE-SEFEVDDDGSLPFY 338
            NAKIS E KDP  SA A W+ V SGGN     V +E KSG+ C E SEFE++ DGSLPFY
Sbjct: 283  NAKISIEEKDPAFSAMADWQAVRSGGNGSVAGVTEEVKSGVVCDEQSEFELEADGSLPFY 342

Query: 339  ILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            I+DAHE++ GANMGTLYLFGKVKAG+T+HSCC+VVKNMQRCVYAIPNG +F T+++++LE
Sbjct: 343  IIDAHEEIFGANMGTLYLFGKVKAGNTYHSCCMVVKNMQRCVYAIPNGSIFHTEDMIRLE 402

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
            KD EESRISP  FRKKLQDVA  LK EIANQ L+LNVS++ ++PVKR+YAF + +IP GE
Sbjct: 403  KDVEESRISPAEFRKKLQDVAYELKNEIANQFLSLNVSSFSMTPVKRKYAFERQDIPVGE 462

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
            NY LKINY FK+PPLPADLKGE F +LLGTH SALELFLVKRKVKGPSWLS+SKFS+CPA
Sbjct: 463  NYALKINYSFKEPPLPADLKGETFSALLGTHCSALELFLVKRKVKGPSWLSVSKFSTCPA 522

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             QRVSWCK+EIT DSPKDIRVSSSSK+  E+PPV VTAINLKT+ N++Q+VNEIVSAS++
Sbjct: 523  SQRVSWCKFEITADSPKDIRVSSSSKNTIEIPPVVVTAINLKTIINEKQNVNEIVSASLI 582

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
            CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF+KE T+RN++AGSNVL  ES
Sbjct: 583  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFSKEVTERNTQAGSNVLGIES 642

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SERALLNRLMI L KLDSDVLVGHNISGFDLDVLLHR+Q CRVPSSMWSKIGRLKRS MP
Sbjct: 643  SERALLNRLMIALNKLDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKIGRLKRSIMP 702

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL KG T+FGSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLT+LA+T+LNKDRKEV 
Sbjct: 703  KLTKGNTMFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELARTRLNKDRKEVT 762

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
            PHD+ +MFQ+ +SL+ELIE+GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR
Sbjct: 763  PHDIPRMFQSSKSLIELIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 822

Query: 819  AQRVEYLLLHAFRAKKYIVPDK--FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            AQRVEYLLLHAF AKKYIVPDK  F   KETKM K+R ++GVE++N EEL  + ANFDND
Sbjct: 823  AQRVEYLLLHAFHAKKYIVPDKNSFHLKKETKMTKRRIHNGVEEKNAEELDTDHANFDND 882

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
            +  ND  KGK+GPAY GGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTVE+S D
Sbjct: 883  SPENDRGKGKKGPAYVGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTD 942

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYG 996
            GLVP LPS KTTGVLPELLKNLV+RRRMVK+WMK ASGLK+QQLDIQQQALKLTANSMYG
Sbjct: 943  GLVPRLPSIKTTGVLPELLKNLVERRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYG 1002

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLGFSNSRFYAKPLAELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI+SG++DI K
Sbjct: 1003 CLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLEDITK 1062

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
            AKAIAGKVIQEVNKKY+CLEIDLDGLYKRMLLLKKKKYAAVK+QFKDG PYEVIERKGLD
Sbjct: 1063 AKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLD 1122

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRRDWSLLSKE+GDFCL+QILS  SCEDVVESIHNSLMKVQE+MR+GQVALEKY+ITKT
Sbjct: 1123 MVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYIITKT 1182

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTKPPEAYPDAKNQPHV VALRLKQSGY+TGCS GDTVPYIICCEQG + GSS GIAQRA
Sbjct: 1183 LTKPPEAYPDAKNQPHVMVALRLKQSGYTTGCSVGDTVPYIICCEQGATPGSSSGIAQRA 1242

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
            RHPDELKK DGKWMIDIDYY SQQIHPVVSRLCASI+GTSPERLADCLGLD SKFQ K S
Sbjct: 1243 RHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSS 1302

Query: 1297 ETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPET 1356
            E +++DP+SSLLFAV DEERYR CEPL+LSCPSCS TF+CPAV  SIC S+S  P+K + 
Sbjct: 1303 EAINNDPASSLLFAVNDEERYRSCEPLLLSCPSCSGTFECPAVFGSICTSISANPTKLQV 1362

Query: 1357 E---YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
            E    NFW  +RCPKCPEE + GRISP M+ANQVKRQA+GFVSMYYKGLM CDDETCK+ 
Sbjct: 1363 EESVSNFWCRMRCPKCPEEGDTGRISPAMLANQVKRQAEGFVSMYYKGLMTCDDETCKHI 1422

Query: 1414 TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS 1473
            T SLNLRLIGD+ERGTVCPNYPRCNGRLVRKYTEA+LYKQL+++C+LLDT R +EKM+  
Sbjct: 1423 TRSLNLRLIGDSERGTVCPNYPRCNGRLVRKYTEAELYKQLSFYCYLLDTVRCMEKMDAG 1482

Query: 1474 AKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
             +I LEK++ KIRP+V LA STVQ+IR+RCAYGWV+L+D++++V
Sbjct: 1483 TRISLEKKITKIRPMVDLAVSTVQKIRDRCAYGWVQLSDLSVTV 1526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480801\|ref\|XP_002277947.2\| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463959\|ref\|XP_004149697.1\| PREDICTED: DNA polymerase alpha catalytic subunit-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|380710181\|gb\|AFD98849.1\| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356496908\|ref\|XP_003517307.1\| PREDICTED: DNA polymerase alpha catalytic subunit-like [Glycine max]	Back alignment and taxonomy information

>gi\|224096742\|ref\|XP_002310719.1\| predicted protein [Populus trichocarpa] gi\|222853622\|gb\|EEE91169.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|334188684\|ref\|NP_201511.2\| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana] gi\|363548407\|sp\|Q9FHA3.2\|DPOLA_ARATH RecName: Full=DNA polymerase alpha catalytic subunit gi\|332010917\|gb\|AED98300.1\| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|85541645\|sp\|O48653.2\|DPOLA_ORYSJ RecName: Full=DNA polymerase alpha catalytic subunit	Back alignment and taxonomy information

>gi\|218189439\|gb\|EEC71866.1\| hypothetical protein OsI_04575 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|56784778\|dbj\|BAD81999.1\| putative DNA polymerase alpha catalytic subunit [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1517
UNIPROTKB\|O48653		1534	LOC_Os01g64820 "DNA polymerase	0.961	0.951	0.608	0.0
UNIPROTKB\|Q0JHE4		1244	Os01g0868300 "DNA polymerase"	0.807	0.984	0.669	0.0
UNIPROTKB\|F1NR19		1462	POLA1 "DNA polymerase" [Gallus	0.481	0.5	0.392	1e-190
RGD\|621816		1451	Pola1 "polymerase (DNA directe	0.464	0.485	0.387	7.1e-188
UNIPROTKB\|O89042		1451	Pola1 "DNA polymerase alpha ca	0.464	0.485	0.387	7.1e-188
ZFIN\|ZDB-GENE-030114-9		1468	pola1 "polymerase (DNA directe	0.464	0.480	0.401	5.5e-186
UNIPROTKB\|Q59J89		1441	Q59J89 "DNA polymerase" [Trach	0.462	0.486	0.400	9e-186
MGI\|MGI:99660		1465	Pola1 "polymerase (DNA directe	0.464	0.481	0.383	3e-185
UNIPROTKB\|A6NMQ1		1468	POLA1 "DNA polymerase" [Homo s	0.464	0.480	0.397	5.4e-184
UNIPROTKB\|P09884		1462	POLA1 "DNA polymerase alpha ca	0.464	0.482	0.397	5.4e-184

UNIPROTKB\|O48653 LOC_Os01g64820 "DNA polymerase alpha catalytic subunit" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 4555 (1608.5 bits), Expect = 0., P = 0.
 Identities = 912/1499 (60%), Positives = 1103/1499 (73%)

Query:    47 IKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDE 106
             +++E PIYDTVAE++Y ALVARRR++A  FIVDDDGLGY D+G+EEDW+   + SSSD+ 
Sbjct:    48 VRIEAPIYDTVAEEDYAALVARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEG 107

Query:   107 S--LDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMF--XX 162
             S   DG    +KQ    + K+   Q+    + S  AAA M  ++  S   +S        
Sbjct:   108 SDGEDGAPRKRKQP-RPQSKRPPQQSAAAASLS-AAAAMMGKQRLSSMFTSSVFRKPGSD 165

Query:   163 XXXXXXXXXXXXIDEVLAEFAPDEADXXXXXXXXXX--------NIKSFVSVNSVKTNSQ 214
                         +D+V+AEFAPD+ D                     + +   +V  ++ 
Sbjct:   166 RGRDSSLAADSIVDDVIAEFAPDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTA 225

Query:   215 LVTNSTN--SVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFXXXXXXXX 272
             +   S N     E SD  N+       DV  E K L      S EL    N         
Sbjct:   226 MAFRSDNVFEAHEVSDHGNDMDMELKPDVEMEPK-LDTPLGASAELANNSN-SLEEPKQE 283

Query:   273 XXXXXXXXXXXXLNAKISTEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----Q 323
                         LNAKI TE      + SATAGW ++ G G+    EG    N      +
Sbjct:   284 ANGEVKIEKVHRLNAKIKTEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDE 343

Query:   324 ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAI 383
              SEFE+ D G+LPFYILDA+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAI
Sbjct:   344 SSEFELKD-GALPFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAI 402

Query:   384 PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
             P+  +F  D I +LEK++  S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PV
Sbjct:   403 PSSSIFPRDTISRLEKNSTTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPV 461

Query:   444 KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             KR YAF + ++P GE YVLKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+K
Sbjct:   462 KRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIK 521

Query:   504 GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
             GPSWLSISKF +CPA QRVSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ 
Sbjct:   522 GPSWLSISKFLACPATQRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTII 580

Query:   564 NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
             N++ +V+EIVSASV+CCH+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++
Sbjct:   581 NEKHNVHEIVSASVICCHRVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESS 640

Query:   624 DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
             DRN KAGSNVL  ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS
Sbjct:   641 DRNQKAGSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPS 700

Query:   684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
             +MWSKIGRL+RS MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLT
Sbjct:   701 NMWSKIGRLRRSVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLT 760

Query:   744 QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
             QLA+TQL K+RKEV PHD+  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLT
Sbjct:   761 QLAETQLKKERKEVSPHDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLT 820

Query:   804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             NISGNLWGKTLQG+RAQRVEYLLLHAF A+K+IVPDKF   KE    K++ N   E    
Sbjct:   821 NISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARP 880

Query:   864 EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
             +E    D + D++  H D  K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQE
Sbjct:   881 DEA---DPSIDDEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 937

Query:   924 YNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQ 983
             YNICFTTV+RS DG VP+LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQ
Sbjct:   938 YNICFTTVDRSADGNVPNLPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQ 997

Query:   984 QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
             QQALKLTANSMYGCLGFSNSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTD
Sbjct:   998 QQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTD 1057

Query:  1044 SIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKD 1103
             SIMIH+              VIQEVNKKY+CLEIDLDG                     D
Sbjct:  1058 SIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-D 1116

Query:  1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
             G   E IERKGLDMVRRDWSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR 
Sbjct:  1117 GSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRG 1176

Query:  1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             GQ  LEKY+ITK+LTK PE YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q 
Sbjct:  1177 GQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQD 1235

Query:  1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             + S  S GIAQRARHP+ELK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+C
Sbjct:  1236 SESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAEC 1295

Query:  1284 LGLDPSKFQXXXXXXXXXXXXXXLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
             LGLD SKFQ              LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S 
Sbjct:  1296 LGLDSSKFQSRLTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSL 1355

Query:  1343 ICMSVSEKPSKP----ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             I  S S   S P    +   NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++Y
Sbjct:  1356 IIGSSSGNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLY 1415

Query:  1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
             YKGL+MCDDE CKY+T S+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC
Sbjct:  1416 YKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFC 1475

Query:  1459 HLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
             +++D  R +EK++  A++P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct:  1476 YVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1534

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS;IDA

GO:0003896 "DNA primase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IDA

GO:0006270 "DNA replication initiation" evidence=IEP

GO:0006273 "lagging strand elongation" evidence=IEP

UNIPROTKB\|Q0JHE4 Os01g0868300 "DNA polymerase" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NR19 POLA1 "DNA polymerase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|621816 Pola1 "polymerase (DNA directed), alpha 1, catalytic subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|O89042 Pola1 "DNA polymerase alpha catalytic subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030114-9 pola1 "polymerase (DNA directed), alpha 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59J89 Q59J89 "DNA polymerase" [Trachemys scripta (taxid:34903)]	Back alignment and assigned GO terms

MGI\|MGI:99660 Pola1 "polymerase (DNA directed), alpha 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A6NMQ1 POLA1 "DNA polymerase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P09884 POLA1 "DNA polymerase alpha catalytic subunit" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O89042	DPOLA_RAT	2, ., 7, ., 7, ., 7	0.3458	0.9050	0.9462	yes	no
O48653	DPOLA_ORYSJ	2, ., 7, ., 7, ., 7	0.6411	0.9848	0.9739	yes	no
P09884	DPOLA_HUMAN	2, ., 7, ., 7, ., 7	0.3566	0.8932	0.9268	yes	no
P33609	DPOLA_MOUSE	2, ., 7, ., 7, ., 7	0.3421	0.8938	0.9255	yes	no
Q9FHA3	DPOLA_ARATH	2, ., 7, ., 7, ., 7	0.6254	0.9894	0.9849	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.976
4th Layer	2.7.7.7	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1517
cd05532		400	cd05532, POLBc_alpha, DNA polymerase type-B alpha	0.0
TIGR00592		1172	TIGR00592, pol2, DNA polymerase (pol2)	0.0
pfam00136		458	pfam00136, DNA_pol_B, DNA polymerase family B	1e-130
COG0417		792	COG0417, PolB, DNA polymerase elongation subunit (	1e-124
smart00486		474	smart00486, POLBc, DNA polymerase type-B family	2e-96
cd05776		234	cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5'	3e-83
cd05536		371	cd05536, POLBc_B3, DNA polymerase type-B B3 subfam	4e-78
PRK05762		786	PRK05762, PRK05762, DNA polymerase II; Reviewed	1e-77
PTZ00166		1054	PTZ00166, PTZ00166, DNA polymerase delta catalytic	4e-67
cd00145		323	cd00145, POLBc, DNA polymerase type-B family catal	5e-67
cd05533		393	cd05533, POLBc_delta, DNA polymerase type-B delta	7e-65
cd05537		371	cd05537, POLBc_Pol_II, DNA polymerase type-II subf	9e-52
cd05534		451	cd05534, POLBc_zeta, DNA polymerase type-B zeta su	2e-44
cd05530		372	cd05530, POLBc_B1, DNA polymerase type-B B1 subfam	1e-40
PRK05761		787	PRK05761, PRK05761, DNA polymerase I; Reviewed	9e-40
pfam08996		187	pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc f	1e-29
cd05531		352	cd05531, POLBc_B2, DNA polymerase type-B B2 subfam	1e-29
PHA03036		1004	PHA03036, PHA03036, DNA polymerase; Provisional	2e-25
cd05538		347	cd05538, POLBc_Pol_II_B, DNA polymerase type-II B	4e-19
pfam03104		254	pfam03104, DNA_pol_B_exo1, DNA polymerase family B	1e-18
pfam12254		67	pfam12254, DNA_pol_alpha_N, DNA polymerase alpha s	6e-18
cd05160		199	cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea	6e-13
PHA03334		1545	PHA03334, PHA03334, putative DNA polymerase cataly	1e-09
cd05777		230	cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea	1e-08
cd05784		193	cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease	2e-08
cd05780		195	cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu	3e-08
PHA02528		881	PHA02528, 43, DNA polymerase; Provisional	9e-08
cd05785		207	cd05785, DNA_polB_like2_exo, Uncharacterized bacte	2e-07

>gnl\|CDD\|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain	Back alignment and domain information

 Score =  665 bits (1719), Expect = 0.0
 Identities = 251/410 (61%), Positives = 303/410 (73%), Gaps = 16/410 (3%)

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----- 938
            K K+   YAGGLVLEPKKGLYDK+ILLLDFNSLYPSIIQEYNICFTTV+R+         
Sbjct: 1    KKKKKAKYAGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVDRADPDDEDDEE 60

Query: 939  VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGC 997
             P  PS +  G+LP +++ LV+RRR VK  MK+     K  QLDI+Q ALKLTANSMYGC
Sbjct: 61   PPLPPSDQEKGILPRIIRKLVERRRQVKKLMKSEKDPDKKAQLDIRQLALKLTANSMYGC 120

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LGFS SRFYAKPLA LIT +GREIL+ T DLV+  +NLEVIYGDTDSIMI++G  D  +A
Sbjct: 121  LGFSYSRFYAKPLAALITSKGREILQKTKDLVEK-MNLEVIYGDTDSIMINTGTTDYEEA 179

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
            K +  K+ +EVNK YK LEID+DG++KR+LLLKKKKYAA+KV   D       E KGLD+
Sbjct: 180  KKLGNKIKKEVNKSYKKLEIDIDGVFKRLLLLKKKKYAALKVV-DDDKGKLKKEVKGLDI 238

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSKE+G++ L QILS++S ED+VE+IH  L K+ ED+R+G++ LEK++ITK L
Sbjct: 239  VRRDWCPLSKEIGNYVLDQILSDKSREDIVENIHEYLRKINEDLRNGKIPLEKFIITKQL 298

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            TK PE YPD K+ PHVQVALR+ + G      AGDT+PYIIC       GSS  +A RA 
Sbjct: 299  TKNPEEYPDKKSLPHVQVALRMNKRGRKV--KAGDTIPYIIC-----KDGSSKSLADRAY 351

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
            HPDE+KK +    IDI+YY SQQI P +SRLC  IEGT   RLA+CLGLD
Sbjct: 352  HPDEVKKNE-NLKIDIEYYLSQQILPPISRLCEPIEGTDAVRLAECLGLD 400

Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only. Length = 400

>gnl\|CDD\|233037 TIGR00592, pol2, DNA polymerase (pol2)	Back alignment and domain information

>gnl\|CDD\|215742 pfam00136, DNA_pol_B, DNA polymerase family B	Back alignment and domain information

>gnl\|CDD\|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214691 smart00486, POLBc, DNA polymerase type-B family	Back alignment and domain information

>gnl\|CDD\|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase	Back alignment and domain information

>gnl\|CDD\|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed	Back alignment and domain information

>gnl\|CDD\|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain	Back alignment and domain information

>gnl\|CDD\|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed	Back alignment and domain information

>gnl\|CDD\|220087 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger	Back alignment and domain information

>gnl\|CDD\|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|222962 PHA03036, PHA03036, DNA polymerase; Provisional	Back alignment and domain information

>gnl\|CDD\|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain	Back alignment and domain information

>gnl\|CDD\|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain	Back alignment and domain information

>gnl\|CDD\|221491 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 N terminal	Back alignment and domain information

>gnl\|CDD\|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>gnl\|CDD\|223049 PHA03334, PHA03334, putative DNA polymerase catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase	Back alignment and domain information

>gnl\|CDD\|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases	Back alignment and domain information

>gnl\|CDD\|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>gnl\|CDD\|177369 PHA02528, 43, DNA polymerase; Provisional	Back alignment and domain information

>gnl\|CDD\|99828 cd05785, DNA_polB_like2_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1517
KOG0970		1429	consensus DNA polymerase alpha, catalytic subunit	100.0
TIGR00592		1172	pol2 DNA polymerase (pol2). This family is based o	100.0
PTZ00166		1054	DNA polymerase delta catalytic subunit; Provisiona	100.0
KOG0969		1066	consensus DNA polymerase delta, catalytic subunit	100.0
PRK05762		786	DNA polymerase II; Reviewed	100.0
PRK05761		787	DNA polymerase I; Reviewed	100.0
COG0417		792	PolB DNA polymerase elongation subunit (family B)	100.0
PHA03036		1004	DNA polymerase; Provisional	100.0
PHA02528		881	43 DNA polymerase; Provisional	100.0
KOG0968		1488	consensus DNA polymerase zeta, catalytic subunit [	100.0
cd05534		451	POLBc_zeta DNA polymerase type-B zeta subfamily ca	100.0
cd05532		400	POLBc_alpha DNA polymerase type-B alpha subfamily	100.0
cd05533		393	POLBc_delta DNA polymerase type-B delta subfamily	100.0
cd05536		371	POLBc_B3 DNA polymerase type-B B3 subfamily cataly	100.0
PF00136		466	DNA_pol_B: DNA polymerase family B Several related	100.0
cd05537		371	POLBc_Pol_II DNA polymerase type-II subfamily cata	100.0
cd05530		372	POLBc_B1 DNA polymerase type-B B1 subfamily cataly	100.0
cd00145		323	POLBc DNA polymerase type-B family catalytic domai	100.0
cd05531		352	POLBc_B2 DNA polymerase type-B B2 subfamily cataly	100.0
cd05538		347	POLBc_Pol_II_B DNA polymerase type-II B subfamily	100.0
KOG1798		2173	consensus DNA polymerase epsilon, catalytic subuni	100.0
smart00486		471	POLBc DNA polymerase type-B family. DNA polymerase	100.0
PHA03334		1545	putative DNA polymerase catalytic subunit; Provisi	100.0
cd05535		621	POLBc_epsilon DNA polymerase type-B epsilon subfam	100.0
PHA02524		498	43A DNA polymerase subunit A; Provisional	100.0
PF08996		188	zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte	100.0
cd05776		234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	100.0
PF03104		325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	100.0
cd05777		230	DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain	100.0
PHA02523		391	43B DNA polymerase subunit B; Provisional	100.0
cd05778		231	DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease	99.97
TIGR00592		1172	pol2 DNA polymerase (pol2). This family is based o	99.96
cd05780		195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	99.95
cd05784		193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	99.95
cd05785		207	DNA_polB_like2_exo Uncharacterized bacterial subgr	99.94
cd05781		188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	99.93
cd05160		199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	99.93
cd05779		204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	99.93
cd05783		204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	99.88
PF12254		67	DNA_pol_alpha_N: DNA polymerase alpha subunit p180	99.86
PHA02563		630	DNA polymerase; Provisional	99.79
cd05782		208	DNA_polB_like1_exo Uncharacterized bacterial subgr	99.66
PF10108		209	DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate	99.34
PF13482		164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	98.66
COG3359		278	Predicted exonuclease [DNA replication, recombinat	97.88
PHA02735		716	putative DNA polymerase type B; Provisional	97.87
PF08490		396	DUF1744: Domain of unknown function (DUF1744); Int	97.82
PRK05711		240	DNA polymerase III subunit epsilon; Provisional	97.67
TIGR01406		225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	97.63
cd06131		167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	97.46
PRK06807		313	DNA polymerase III subunit epsilon; Validated	97.33
PRK08517		257	DNA polymerase III subunit epsilon; Provisional	97.3
cd06136		177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	97.25
PRK07883		557	hypothetical protein; Validated	97.13
smart00479		169	EXOIII exonuclease domain in DNA-polymerase alpha	97.11
PRK07740		244	hypothetical protein; Provisional	97.09
PF03175		459	DNA_pol_B_2: DNA polymerase type B, organellar and	97.04
PRK06310		250	DNA polymerase III subunit epsilon; Validated	97.02
PRK07942		232	DNA polymerase III subunit epsilon; Provisional	96.96
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	96.89
PRK06309		232	DNA polymerase III subunit epsilon; Validated	96.86
PRK05601		377	DNA polymerase III subunit epsilon; Validated	96.79
PRK06063		313	DNA polymerase III subunit epsilon; Provisional	96.74
TIGR00573		217	dnaq exonuclease, DNA polymerase III, epsilon subu	96.69
cd06134		189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	96.69
TIGR01405		1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	96.53
PRK05168		211	ribonuclease T; Provisional	96.53
cd06138		183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	96.5
cd06130		156	DNA_pol_III_epsilon_like an uncharacterized bacter	96.4
PRK06195		309	DNA polymerase III subunit epsilon; Validated	96.39
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	96.3
PRK07748		207	sporulation inhibitor KapD; Provisional	96.13
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	95.92
cd06144		152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	95.88
TIGR03491		457	RecB family nuclease, putative, TM0106 family. Mem	95.84
PRK09145		202	DNA polymerase III subunit epsilon; Validated	95.7
cd06127		159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	95.7
TIGR01298		200	RNaseT ribonuclease T. in gamma-subdivision Proteo	95.57
KOG1798		2173	consensus DNA polymerase epsilon, catalytic subuni	95.49
cd06149		157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	95.39
COG0847		243	DnaQ DNA polymerase III, epsilon subunit and relat	95.31
PRK09146		239	DNA polymerase III subunit epsilon; Validated	95.26
PF01612		176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	95.12
cd06133		176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	94.86
cd06145		150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	94.7
cd06137		161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	94.69
COG2176		1444	PolC DNA polymerase III, alpha subunit (gram-posit	94.5
PRK07247		195	DNA polymerase III subunit epsilon; Validated	94.48
PRK06722		281	exonuclease; Provisional	93.42
PRK11779		476	sbcB exonuclease I; Provisional	91.09
PRK05359		181	oligoribonuclease; Provisional	90.34
cd06135		173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	90.18
cd06125		96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	90.11
PRK00448		1437	polC DNA polymerase III PolC; Validated	88.65
PRK09182		294	DNA polymerase III subunit epsilon; Validated	86.42
cd06146		193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	86.41
PHA03144		746	helicase-primase primase subunit; Provisional	84.45
cd06139		193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	83.86
PHA03181		764	helicase-primase primase subunit; Provisional	82.32
cd00007		155	35EXOc 3'-5' exonuclease. The 35EXOc domain is res	80.29

>KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=6.4e-304  Score=2706.68  Aligned_cols=1385  Identities=43%  Similarity=0.702  Sum_probs=1125.1

Q ss_pred             CCCCCccccccccccccchhHHHHHHHHHHHHHcCCCccCCCccccccccCCcccccChHHHHHHHHHHHhhcCCcEEeC
Q 000430            1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD   80 (1517)
Q Consensus         1 ~~~~~~~~~~R~~r~~~~k~~r~~ALe~LK~~r~ggk~~~~~~~yeV~e~~~VYdeVDE~eY~kiV~~Rq~d~dDfIVDD   80 (1517)
                      |+|+++  ++|+||.+.+|++|++||||||++| |.+     ++|||+++++|||+|||+||.||||+||+|  ||||||
T Consensus         1 ms~s~s--es~~rR~~~~ks~r~~alerLk~ar-~s~-----~~Ye~e~~~~vYD~VDeeEY~k~v~~r~~D--dfvVdD   70 (1429)
T KOG0970|consen    1 MSDSES--ESRRRRSRGSKSSRLAALERLKAAR-TSG-----DKYEVEEVEDVYDTVDEEEYRKIVRQRLDD--DFVVDD   70 (1429)
T ss_pred             CCCCCc--chhhhhhccCchhhHHHHHHHHHhh-ccC-----cccccccccccccccCHHHHHHHHHHHhcC--CeEEeC
Confidence            888887  7888888889999999999999999 332     379999999999999999999999999885  999999


Q ss_pred             CCCcccCCCcc-cccccCCCCCCCCcccccchhhhhhhhhhhhcccccccCcCCCCCchhHHHhhcchhhHHHHHhcccc
Q 000430           81 DGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAM  159 (1517)
Q Consensus        81 dG~GYvddGrE-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  159 (1517)
                      ||.||||+||+ +||+.+     ++++..+++  +|++|+.++    .||+++        ..++++..+++++|++. +
T Consensus        71 dG~GYvd~G~deeD~~~~-----s~ed~~nek--~k~gk~~kk----~Kr~~k--------~~~~t~~~~~kk~~~~~-~  130 (1429)
T KOG0970|consen   71 DGVGYVDNGVDEEDWSSP-----SDEDTGNEK--KKGGKKPKK----DKRKEK--------DHPVTQMLSTKKSNSAL-V  130 (1429)
T ss_pred             CCccccccCcchhhccCC-----Ccccccccc--ccccccccc----hhhhhc--------cccccccccccccchhh-h
Confidence            99999999994 466411     222222112  222221111    122222        24788999999999998 4


Q ss_pred             cccccccccc-cchHHHHHHHhccCCCchh--------------hhhhcccccCCccccccccccccccc-cccCC-CC-
Q 000430          160 FKKSKDEKVK-ESESVIDEVLAEFAPDEAD--------------RERRRRSVSSNIKSFVSVNSVKTNSQ-LVTNS-TN-  221 (1517)
Q Consensus       160 ~kK~~~~~~~-~~d~~l~dil~e~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-  221 (1517)
                      .|+..+.++. +.|+||+||||+++.++..              ..+||+...+..+..++++..++... ....+ .. 
T Consensus       131 aka~~d~k~~~k~d~~~~diLg~~~e~~~e~~~~~~~i~~~~~s~~~rk~~~~a~n~~~~~~~~~~~~kki~~~~s~~ke  210 (1429)
T KOG0970|consen  131 AKATADQKKSVKIDNFMADILGSIDEEEAEEPEKLKKIRPATPSSPKRKFDSAAKNDSLVPVAIAKKKKKIAEDSSSDKE  210 (1429)
T ss_pred             hhhhccccccccchhhHHHHhhhccccccccccccccccCCCCccccccccccccCCccCcccccccccccCCCCCcCCC
Confidence            5554555544 8999999999999854322              12222221111111112222211110 00001 11 


Q ss_pred             -cCcccccc-----ccccccccCCcchhhhhhcccccCC--Ccc---cccccchhhHhhhhcccccchhhhhhccccccc
Q 000430          222 -SVKENSDL-----INNFVQIQNCDVVEESKELKWESDN--STE---LTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIS  290 (1517)
Q Consensus       222 -~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1517)
                       +..|....     .+|.....  .++++++  ++.+..  .++   ++++++ .++.+...-+..+.........+.+.
T Consensus       211 ~~s~Pvp~~~~~~~~~d~~~~~--~e~e~~~--~ate~e~~e~~~pl~~ee~~-~dieet~~~~~~~~eeV~~~~~a~~~  285 (1429)
T KOG0970|consen  211 RESSPVPTKRADFYIPDVQPEA--DEVENPV--KATEFEDTELENPLADEEDI-EDIEETIAMKKLSMEEVTDTARANKD  285 (1429)
T ss_pred             CCCCCCCchhhhccCCCccccc--ccccCcc--cccccccccccccccccccc-ccHHHHHHhhhHHHHHHhhhhhcccc
Confidence             11111101     11111100  0111111  011101  000   111111 11111111000000000011122222


Q ss_pred             c--CCCCcccccccchhhcCCCcccccCCCCCccccc----ccccC-CCCcEeEEEEeeeccccCCCCcEEEEEEEeec-
Q 000430          291 T--EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQES----EFEVD-DDGSLPFYILDAHEQLSGANMGTLYLFGKVKA-  362 (1517)
Q Consensus       291 ~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~l~fywlD~~E~~~~~~~g~l~LFGKv~~-  362 (1517)
                      .  ..++.++  ++|..-..+.....+  ..+..+.+    ..+.+ ++++|+||||||||++++ .||+|||||||+. 
T Consensus       286 ~~s~~s~~s~--~~~~~di~~~~~~~~--~~~~~~~s~~~~~~~~D~e~~~l~f~wlDaYee~~~-~~g~l~LFGKVk~~  360 (1429)
T KOG0970|consen  286 TISKLSPGSP--PGEPEDIKGLGPSNS--LQVDTDSSSGVLVKPEDVEDGSLRFFWLDAYEEVYK-APGTLYLFGKVKLS  360 (1429)
T ss_pred             chhhcCCCCC--CcChhhhhccCcccc--hhhccchhhcccccccccccceEEEEEehhhHHHhC-CCceEEEEeeeecc
Confidence            2  1233333  334322221110000  01111111    11223 789999999999999995 4999999999995 


Q ss_pred             CCceeEEEEEEecceeeEEEeeCCCCCCchhHHHhhHhhhhccCchHHHHHHHHHHHhhhHHHHHHHhh-cCCeeeEEEE
Q 000430          363 GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL-NLNVSNYIVS  441 (1517)
Q Consensus       363 ~~~~~Sccv~V~n~~R~~y~lPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ei~~~~~-~~~i~~~~~k  441 (1517)
                      +.+|+||||+|+||+|.+|||||+.......-     +.+ .+.+           +.||++||...+. +++++.|+++
T Consensus       361 ~~t~~Sccv~V~ni~R~lyflPR~~~l~~~~~-----e~~-~~~s-----------~~dv~~E~~~~l~~k~~~~~fk~k  423 (1429)
T KOG0970|consen  361 GDTYVSCCVVVKNICRVLYFLPRPIKLSAAVG-----EDS-IPES-----------KRDVYKEVGSLLSNKLGLTEFKSK  423 (1429)
T ss_pred             CCCceEEEEEEcCeeeEEEecccccccccccC-----Ccc-chhh-----------HHHHHHHHHHHHHhhhhhhHhhhh
Confidence            57899999999999999999999976543221     111 1122           3677888888876 5999999999


Q ss_pred             EEEeecccCCCCCCCCceeEEEEEecCCCCCCCcCCCCCccccccCCCchHHHHHhhhcCCCCceeEEEeccccCCCCCC
Q 000430          442 PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR  521 (1517)
Q Consensus       442 ~v~r~yafe~~~vp~~~~~~lkv~y~~~~p~lp~~l~G~tf~~vfgtn~s~~ErFli~rkI~Gp~Wl~i~~~~~~~~~~~  521 (1517)
                      +|+++||||.+|||.+++| |||.|||..|+||+||+|.||+||||+|+++||+|+|+|+|||||||+|.++..  ...+
T Consensus       424 ~v~~~yafe~~dvp~~~dy-LeV~y~~~~p~LP~Dlkgdsfshvfgt~tn~lE~fll~rKimGPCWlkv~~~s~--~~~~  500 (1429)
T KOG0970|consen  424 PVKKNYAFELPDVPMKSDY-LEVLYSYETPKLPSDLKGDSFSHVFGTNTNPLERFLLSRKIMGPCWLKVKGYSD--PPRN  500 (1429)
T ss_pred             hhhhhhccccCCCCCCCcc-eEEeccccCCCCccccccchHHHHhccCccHHHHHHHhccccCceEEEeecCCC--CCCC
Confidence            9999999999999999887 999999999999999999999999999999999999999999999999998873  5789


Q ss_pred             cccceEEEEEeCCCCcccccCCCCCCCCCCceEEEEEeeecCCCCCCcccEEEEEEEEeecccccCccccccccCCCccc
Q 000430          522 VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS  601 (1517)
Q Consensus       522 ~S~Ck~Ev~v~~~~~I~~~~~~~~~~~~PpL~vlS~dIeT~~n~~~~~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~  601 (1517)
                      +|||++||.|.+|++|+++ .+ ...++|||++|||+|+|++|+++|.+||+|||+++++++.||.|+|.+.++     .
T Consensus       501 ~SwCk~Ev~v~sP~nI~~~-~~-~~a~~Ppl~llsL~i~T~~N~k~~~~Eiv~is~l~~~~~~id~p~p~~~~~-----~  573 (1429)
T KOG0970|consen  501 ASWCKVEVTVKSPQNITVV-CS-KKAPPPPLTLLSLNIRTSMNPKQNKNEIVMISMLCFHNFSIDKPAPAPAFP-----R  573 (1429)
T ss_pred             ccceeeEEEecCCcceEEe-ec-CCCCCCCeeEEEeeeeehhccccchhhhhhhhhhhcccccccCCCCCCccc-----C
Confidence            9999999999999999984 22 236799999999999999999999999999999999999999999987654     8


Q ss_pred             eEEEEecCCCcccCCccchhhhcccCCCCCceEeecccHHHHHHHHHHHHHhcCCCEEEccccCcccHHHHHHHHHHcCC
Q 000430          602 HFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV  681 (1517)
Q Consensus       602 ~f~~~r~~~~~~fp~~f~~~~~~~~~~~g~~v~~~~~nEreLL~~Fl~~I~~~DPDVIvGhNi~~FDL~yLl~Ra~~lkI  681 (1517)
                      |||++++|.+++||+||...++++.+    + +..+++|++||++|++.++++|||||||||+.+|+|++|++|+++|||
T Consensus       574 ~~c~l~rP~~~~fP~g~~ela~~k~~----~-v~~~~sErALLs~fla~~~~~dpD~iVgHn~~~~~l~VLl~R~~~~Ki  648 (1429)
T KOG0970|consen  574 HFCVLTRPPGTSFPLGLKELAKQKLS----K-VVLHNSERALLSHFLAMLNKEDPDVIVGHNIQGFYLDVLLSRLHALKI  648 (1429)
T ss_pred             cceeEecCCCCcCCchHHHHHHhccC----c-eEEecCHHHHHHHHHHHhhccCCCEEEEeccccchHHHHHHHHHHhcC
Confidence            99999999999999999844433322    2 456689999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccCCCcccccCcccccCCCCCCceeeecceEEeecHHHHhhccccCCCCHHHHHHHhcCCCCCccChhh
Q 000430          682 PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD  761 (1517)
Q Consensus       682 ~~~~wsriGRlkr~~~p~~~~~~~~fg~~~~~~~~~~i~GRlv~D~~~~~k~~~k~~SYsL~~va~~~Lg~~k~di~~~e  761 (1517)
                      |+  ||+||||+|+.+|++++++ +||.      +..++|||+||+-.+++++++++||+|+++++++|+.+|.+++..+
T Consensus       649 p~--WS~IgRLrrS~~~kfg~~s-~~~e------~~~~aGRl~CD~~~~a~~lik~~S~~LseL~q~~l~~eR~~i~~~~  719 (1429)
T KOG0970|consen  649 PN--WSSIGRLRRSWPPKFGRSS-SFGE------FFIIAGRLMCDLNLAARELIKAQSYSLSELSQQILKEERKEINANE  719 (1429)
T ss_pred             cc--hhhhhhhhhccccccCCcc-cccc------cccccceEEeehHHHHHhhhccccccHHHHHHHHHhhhcccCCHhH
Confidence            98  9999999999556675443 3664      3468999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchhHHHHHHHHHHhHHHHHHHHhhcccchhHHHHhhhcCCchhhhhcccccchhHHhHHHHHHhcCeeccCcc
Q 000430          762 VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF  841 (1517)
Q Consensus       762 I~~~~~~~~~l~~l~~y~~~DA~L~~~L~~kl~ilpL~~qLt~I~Gn~~~rtL~g~r~~r~E~LLLhef~~~~yI~Pdk~  841 (1517)
                      |+++|.++.+|..+++++++|++++++||++|++|||++|||||+||.|+|||+|||++||||+|||+||++|||+|||.
T Consensus       720 i~~~y~~s~~L~~ll~~~~~d~~~~l~i~~~l~~LpLs~qlTnIaGni~~RTL~G~RAeRnEylLLH~F~~~~fIvPDK~  799 (1429)
T KOG0970|consen  720 IPKMYEDSKSLTYLLEHTITDAELILQIMFRLNALPLSKQLTNIAGNIWARTLQGGRAERNEYLLLHEFYKNGFIVPDKQ  799 (1429)
T ss_pred             hhhhccChHHHHHHHHHHhHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhhccchhhhhHHHHHHHHHCCccCCCcc
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             chhhHhhhhhcccCCCcccccccccccccCCCCCCCCccccccCCCCCCCCCceeeecccccccceEEEeeccCcchhHH
Q 000430          842 TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII  921 (1517)
Q Consensus       842 ~~~~~~~~~~~r~~~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~~k~~Y~GGlVleP~~Gly~~~V~~LDF~SLYPSII  921 (1517)
                      ...+.+         +..+.          +.++   .....+++++++|+||+||||++|||+++|++|||||||||||
T Consensus       800 ~ssk~~---------~d~d~----------~~eg---~d~~~~~KKk~kYaGGLVlePkkGlYe~~VLllDFNSLYPSII  857 (1429)
T KOG0970|consen  800 NSSKAQ---------KDADE----------TEEG---ADEPSKGKKKAKYAGGLVLEPKKGLYEKYVLLLDFNSLYPSII  857 (1429)
T ss_pred             chhhhh---------hhhhh----------hhcc---ccccccccccccccCceeeccccchhhheeEEEEccccchHHH
Confidence            332211         11111          1111   1112235677999999999999999999999999999999999


Q ss_pred             HHhCccccccccC--CCCCcccCCC-CCccCCcHHHHHHHHHHHHHHHHHHhhcch-hHHHhhHHHHHHHhhhhhccccc
Q 000430          922 QEYNICFTTVERS--PDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC  997 (1517)
Q Consensus       922 ~~~NIc~tTv~~~--~d~~v~~~p~-~~~~GilP~iL~~Ll~~R~~vK~~mK~~~~-~~~~~~d~rQ~AlKl~aNS~YG~  997 (1517)
                      |+||||||||.+.  ..+.+|.+|. ..++||||++|+.||++|++||++||+..+ .++.||||||+||||||||||||
T Consensus       858 QEyNICFTTv~~~~~d~Dqlp~lP~s~~~~GiLPr~l~~LVerRk~VK~lMK~~~tp~~~~q~DIRQqALKLTANSMYGC  937 (1429)
T KOG0970|consen  858 QEYNICFTTVDRFSVDSDQLPRLPSSSSEQGILPRLLENLVERRKEVKKLMKQELTPEKRKQLDIRQQALKLTANSMYGC  937 (1429)
T ss_pred             HHhhheeeeccccccCcccCCCCCCccccCCccHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhHHHHHHhhhhccchhh
Confidence            9999999999972  2346899995 489999999999999999999999998644 89999999999999999999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEeeccceeeecCcccHHHHHHHHHHHHHHHhcccceeEE
Q 000430          998 LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEI 1077 (1517)
Q Consensus       998 lG~~~srfy~~~lA~~IT~~GR~iL~~t~~~ve~~~g~~VIYGDTDSimI~~~~~~~~ea~~ig~~i~~~Vn~~~~~leL 1077 (1517)
                      |||++||||++|+|++||.+||+||++|++++++ ||++|||||||||||++|.+|+++|++||++|+++||++|+.|||
T Consensus       938 LGf~~SRFyAkpLAaLVT~KGReiLm~Tk~Lve~-mnl~VIYGDTDSvMInTn~td~~~a~kig~~~k~~VNkrYk~LEI 1016 (1429)
T KOG0970|consen  938 LGFVNSRFYAKPLAALVTYKGREILMNTKDLVEK-MNLEVIYGDTDSVMINTNSTDYEEALKIGNEFKQAVNKRYKLLEI 1016 (1429)
T ss_pred             cccccchhhhhhHHHHHhhhhHHHHHHHHHHHHh-cCeEEEEcCCceEEeeCCCccHHHHHHHHHHHHHHHHHHhhhhee
Confidence            9999999999999999999999999999999997 999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeeeccceeeEEEeeecCCccceeEEEeeeeeeeCchhHhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000430         1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157 (1517)
Q Consensus      1078 E~E~vy~~~lLl~KKrYa~l~~~~~dG~~~~~~e~KGle~vRRD~c~l~k~~~~~vl~~IL~~~~~e~~~~~i~~~l~~~ 1157 (1517)
                      |+||||++|||++||||||+.+. +||+-.+.+|+|||||||||||+|+|++++.||++||++.++|++++.||++|+++
T Consensus      1017 DiDgVfkrlLLlkKKKYAAL~l~-~dgkg~~~~E~KGLDmvRRDwc~Lake~g~~vLd~ILs~~~~ee~veaI~d~L~kI 1095 (1429)
T KOG0970|consen 1017 DIDGVFKRLLLLKKKKYAALTLN-KDGKGVERIEVKGLDMVRRDWCQLAKEIGKAVLDKILSDKSREEIVEAIHDELRKI 1095 (1429)
T ss_pred             ehhHHHHHHHHHhhhhheeEEec-CCCCCceeeeecccchhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999987 68886678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCccceEEeeccCCCCCCCCCCCCchHHHHHHHHHhcCCCCCCCCCCeeEEEEEeccCCCCCCCcCcccccc
Q 000430         1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237 (1517)
Q Consensus      1158 ~~~l~~g~v~l~~lvItk~LsK~~~~Y~~~k~~pHV~vA~rl~~~g~~~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~RA~ 1237 (1517)
                      .++|++|.||+++|+|+|+|+|+|++|++++++|||+||+||+++|. +.+++||+|+||||+.++    ...++++|||
T Consensus      1096 ~~k~~~G~vpl~~fvI~k~LtK~Pe~Yp~~kslPhVqVALrm~~~G~-~~~k~gDvV~yVI~~~D~----~~~~As~RAy 1170 (1429)
T KOG0970|consen 1096 SEKLENGNVPLEKFVITKTLTKNPEAYPDGKSLPHVQVALRMNKRGK-RKVKAGDVVPYVICKEDG----IDNPASERAY 1170 (1429)
T ss_pred             HHHHhcCccchhheeeehhccCChhhCCCcccCcHHHHHHHHHHhcC-cccccCCeEEEEEecCCC----CCCchhhccc
Confidence            99999999999999999999999999999999999999999999994 679999999999998654    3456679999


Q ss_pred             CchhhhhcCCCCCCChHHHHhhCchHHHHHhhcccCCCCHHHHHHHhCCCCcceecCCCCCCCCCCCCcccccCCchhhc
Q 000430         1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERY 1317 (1517)
Q Consensus      1238 ~P~ev~~~~~~l~iD~eYYl~~QI~p~v~Rl~~pI~g~~~~~la~~lGld~~~~~~~~~~~~~~~~~~~~~~~~~d~erf 1317 (1517)
                      ||+|+...+++|.||++|||.|||||||+|||+||+||+++|||+|||||+++|+.+...+..++...+..++++|.+||
T Consensus      1171 h~~e~~~~~~~l~iD~~YYLa~QIhPvV~Rlve~Iegt~a~riae~LGlDstkyr~~~~~q~~~~a~s~~~s~~td~~~~ 1250 (1429)
T KOG0970|consen 1171 HPDEVMPDEDNLAIDYNYYLAQQIHPVVERLVEPIEGTDAVRIAECLGLDSTKYRRHEGNQKENSALSPDESTLTDVERF 1250 (1429)
T ss_pred             ChHhhCccCcceeechhhHhhhhcchhHHHHhhhhcccCHHHHHHHhCCCchhhhhhhcchhhhhhhCCCcchhcchhhh
Confidence            99999998877999999999999999999999999999999999999999999998876666677788888999999999


Q ss_pred             cCCCCceeeCCCCCCccccCCcccccccccCCCCCCCcccccccccccCCCCCCccccCCCCHHHHHHHHHHHHHHHHHh
Q 000430         1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397 (1517)
Q Consensus      1318 ~~~~~l~~~C~~C~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~i~nql~~~ir~~i~~ 1397 (1517)
                      ++|+||.+.||.|++++.+.+++....          +.....+..+.|++|+.++   ..++++|.||++++||.||++
T Consensus      1251 ~~ce~~~l~CptC~~~~~~~~~~~~~s----------~~~~~~~l~~~Ca~Cq~~~---~~~~~~i~nq~~~qir~fV~~ 1317 (1429)
T KOG0970|consen 1251 KDCEPLTLRCPTCSTENSRAFAVDKVS----------EMSRKEVLSLYCARCQQEP---IESPASITNQVERQIRCFVSL 1317 (1429)
T ss_pred             ccccceEEECCCCCCcccccccccCcc----------cchhhhHhhhcChhhhcCC---ccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998886321          1112345678899999854   458999999999999999999


Q ss_pred             hhceeeeeCCccCCCcccccceeeeccCcCCCCCCCCCCcc-eeeEeeechHHHHHHHHHHHHhhchhHhHhhhhcccCc
Q 000430         1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476 (1517)
Q Consensus      1398 yy~~~~~Cdd~~C~~~tr~~~~r~~~~~~~~~~C~~~~~C~-g~m~~~ys~~~ly~qL~y~~~lfd~~~~~~~~~~~~~~ 1476 (1517)
                      ||.|||+||||+|+++||+++|++   .+.|+.|+   +|+ |+|+++||+++||||||||++|||++ |++++....++
T Consensus      1318 yy~g~lvCdd~tC~~~TR~~sv~~---~R~g~~C~---~C~~g~l~r~Ytd~~LY~Ql~y~r~i~d~e-al~k~t~~~~~ 1390 (1429)
T KOG0970|consen 1318 YYLGWLVCDDPTCGFRTRQQSVFG---KREGPLCP---GCRIGVLRREYTDKQLYNQLCYFRYILDCE-ALEKMTLAHRL 1390 (1429)
T ss_pred             HhhhheeecCcccccccccceeec---cccCccCc---cccccchhhhhhHHHHHHHHHHHHHHHhhH-HHhhhccchhc
Confidence            999999999999999999999987   56799998   497 99999999999999999999999999 99998776665


Q ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHhcCCCeeecCCcee
Q 000430         1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515 (1517)
Q Consensus      1477 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~l~~lf~ 1515 (1517)
                      +-+.......++++.+..+|++||++|||+||||+.||.
T Consensus      1391 ~k~~~~p~~~~ayn~l~~~i~~~l~~~ay~~vdls~iFa 1429 (1429)
T KOG0970|consen 1391 QKEFLTPESIKAYNRLARTIEKYLNKNAYRYVDLSKIFA 1429 (1429)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHhhccceEechHhhcC
Confidence            555455566777888999999999999999999999995

>TIGR00592 pol2 DNA polymerase (pol2)	Back alignment and domain information

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional	Back alignment and domain information

>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair]	Back alignment and domain information

>PRK05762 DNA polymerase II; Reviewed	Back alignment and domain information

>PRK05761 DNA polymerase I; Reviewed	Back alignment and domain information

>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA03036 DNA polymerase; Provisional	Back alignment and domain information

>PHA02528 43 DNA polymerase; Provisional	Back alignment and domain information

>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]	Back alignment and domain information

>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain	Back alignment and domain information

>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain	Back alignment and domain information

>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain	Back alignment and domain information

>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain	Back alignment and domain information

>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included	Back alignment and domain information

>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain	Back alignment and domain information

>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain	Back alignment and domain information

>cd00145 POLBc DNA polymerase type-B family catalytic domain	Back alignment and domain information

>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain	Back alignment and domain information

>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain	Back alignment and domain information

>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]	Back alignment and domain information

>smart00486 POLBc DNA polymerase type-B family	Back alignment and domain information

>PHA03334 putative DNA polymerase catalytic subunit; Provisional	Back alignment and domain information

>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain	Back alignment and domain information

>PHA02524 43A DNA polymerase subunit A; Provisional	Back alignment and domain information

>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase	Back alignment and domain information

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included	Back alignment and domain information

>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase	Back alignment and domain information

>PHA02523 43B DNA polymerase subunit B; Provisional	Back alignment and domain information

>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase	Back alignment and domain information

>TIGR00592 pol2 DNA polymerase (pol2)	Back alignment and domain information

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases	Back alignment and domain information

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase	Back alignment and domain information

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits)	Back alignment and domain information

>PHA02563 DNA polymerase; Provisional	Back alignment and domain information

>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins	Back alignment and domain information

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A	Back alignment and domain information

>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02735 putative DNA polymerase type B; Provisional	Back alignment and domain information

>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon	Back alignment and domain information

>PRK05711 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial	Back alignment and domain information

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins	Back alignment and domain information

>PRK06807 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK08517 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins	Back alignment and domain information

>PRK07883 hypothetical protein; Validated	Back alignment and domain information

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	Back alignment and domain information

>PRK07740 hypothetical protein; Provisional	Back alignment and domain information

>PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins	Back alignment and domain information

>PRK06310 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07942 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06309 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK05601 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06063 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family	Back alignment and domain information

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T	Back alignment and domain information

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>PRK05168 ribonuclease T; Provisional	Back alignment and domain information

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins	Back alignment and domain information

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	Back alignment and domain information

>PRK06195 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PRK07748 sporulation inhibitor KapD; Provisional	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>TIGR03491 RecB family nuclease, putative, TM0106 family	Back alignment and domain information

>PRK09145 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family	Back alignment and domain information

>TIGR01298 RNaseT ribonuclease T	Back alignment and domain information

>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]	Back alignment and domain information

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09146 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides	Back alignment and domain information

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	Back alignment and domain information

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins	Back alignment and domain information

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins	Back alignment and domain information

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07247 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06722 exonuclease; Provisional	Back alignment and domain information

>PRK11779 sbcB exonuclease I; Provisional	Back alignment and domain information

>PRK05359 oligoribonuclease; Provisional	Back alignment and domain information

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins	Back alignment and domain information

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>PRK09182 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins	Back alignment and domain information

>PHA03144 helicase-primase primase subunit; Provisional	Back alignment and domain information

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases	Back alignment and domain information

>PHA03181 helicase-primase primase subunit; Provisional	Back alignment and domain information

>cd00007 35EXOc 3'-5' exonuclease	Back alignment and domain information

Homologous Structure Templates