Citrus Sinensis ID: 000464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------148
MEDKHSEDEKHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHcccccccEEEccccccHHHHHHccccccccccHHHHHccccccccHHHHHHHcccHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHcccccccccccccccEEcccccEEEcccccccccHHHHccccHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHccccccccccHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHccccccEEEEEcHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEEccccccccccccccEEEEEccccccccHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHcccccccccHHEHHHHccccccHHHHHHHHccHHHcccHHcccEEEEcccHccccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEccccHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEccccEEEEEccccccccccccEEEEccccccccccccccccccHHHccccccHHHHHHHHcccccEEccccHHHHHHHHHHHHHHHHHHHHHcccHHHcccccHHHHccccccccHcccEEEEccccccccccccEEEEEEEHccccHHHHcHccHHHHHcccHcccccccccccHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEHHHHHHcccccEEcccHHHcccHHHHcccccEEEEccHHHEcccHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHcHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHccccccccccEEEEcEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHcccccccccHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHHHcHcHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEcccccHHHHEEEHccccccccccccccccEEEcHcccEEcc
medkhsedekheevediesdsgdsfivdsesdepsisgqddglhleehLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIenqvpngcctEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIandgsenggkevsdinwnsvnkifsgdVSEKCAAFGSKHWASVYLASTPQQAaamglkfpgvdeveeiedvdgnsddpfVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnnnEVALQNLETGVLESSVKErslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvkdecstkledhsvspenindaatdnslhsqsLSEKFYCTACnnvaievhphpilnviVCKDCKCllekkmhvkdadcsecycvwcgrssdlvsckscktlfCTTCVKRniseaclsdevqascwqccccspsllKRLTSELGRamgsenlivsssesdsensdadnnlkiggkrkQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFssksklmnsvtldgdlsagaSIEVLGDAITGYIVNVVREkgeeavripssISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAfrnlsfgkhvkdrNMAREICHAlqdgpdilvcdeahmikNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDfvregflgssHEFRNrfqnpiengqhtnstsedVKIMNQRSHILYEQLKGFVQRmdmnvvkkdlppktVFVITVKLSPLQRRLYKRFLDLhgftndrvsNEKIRKSFFAGYQALAQIwnhpgilqltkdkgypsredaedsssdenmdynvvigekprnmndflqgknddgffqKDWWNDLLhehtykeldysgKMVLLLDILTMCsnmgdkslvfsqsiptlDLIEFYlsklprpgkqgklwkkgkdwyrldgrtesSERQKLVERFNEPLNKRVKCTLIStragslginlhsanrviivdgswnptydLQAIYRAWrygqtkpvFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHlfefgddenpdpltavskengqgssqntncalkhklplshegcsdKLMESllgkhhprwisnyHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVdesiserkpasmsnltppapetssvtqprgilrSHVVIRKctnlshkltlrsqgtkpgcstvcgecaqeiswenckvar
medkhsedekheevediesdsgdSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAgaedflqterpvRRRHGKLleegasgflqkkiandgsenggkevsdinWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKelalseeqrkkfrkvkeeddanmdrklqlhlkrrrhrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnNNEVALQNLETGVLESSVKERslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvKDECSTKledhsvspeninDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMhvkdadcsecYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIvsssesdsensdadnnlkiggkrkqkkkirrilddaelgeetkrkiAIEKERQERLKSlqvqfssksklMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGeeavripssisaklkaHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFmkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDFVREGFLGSSHEFRNRFQNpiengqhtnstseDVKIMNQRSHILYEQLKGFVQRMDMNVVkkdlppktvfvitvklsplqRRLYKRFLDLhgftndrvsnEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdenmDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLsklprpgkqgklwkkgkdwyrldgrtesserqklverfneplnkrvkCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFrksleweevqrvtvdesiserkpasmsnltppapetssvtqprgilRSHVVIRKCTnlshkltlrsqgtkpgcsTVCGecaqeiswenckvar
MedkhsedekheevediesdSGDSFIVDSESDEPSISGQDDGlhleehlteeeieeliaefleveSKaaeaqealeleSLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGvdeveeiedvdGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDrklqlhlkrrrhrkISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGIssvsdsalpdssELRGIkrsneseepnsekkrsrTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGsenlivsssesdsensdadnnLkiggkrkqkkkirriLDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdeNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHehetllqeneeerlSKEEQDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR
*******************************************************ELIAEFLE*****************V************ALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQV******************************************************DINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGV***************************************************************************W******************************************************************************************************************************************EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLT**************************************************************************************TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF***********************MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT***********************VVIG******NDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD*************RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEF**********************************************LLGKHHPRWISNYH*********************AWEVFRKSLEWEEVQ*********************************GILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENC****
**************************************************EEEIEELIAEFLE****************************************VEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQV*********************************************************WNSVNKI****************WASVYLA**P*******L*******V***********************************************************************************************************************************************************************************************************************CTACNNVAIEVHPHPILNVIVCKD**********************WCGRSSDLVSCKSCKTLFCTTCVK***********************************************************************************************************************************************VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS****AELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI******************RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL*****************FAGYQALAQIWNHPGILQLTKDKG***********************EKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA*****************LHLFEFGDDEN************************************KLMESLLGKHHPRWISNYHEHETLLQENEEERLS****************************************************************************************GECAQEISWENCKV**
********************SGDSFIV*************DGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL**************************LRGIKR**************RTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLI*************DNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK**************ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS*********NTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRV******************************RGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR
**********************************************EHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIA*************INWN***KIFS*******AAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKIS*************************************************************************************************************************************************SLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIV*********S*******IGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL****TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTND**SNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSS*ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDE*********KENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLE******************************************SHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDKHSEDEKHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEExxxxxxxxxxxxxxxxxxxxxLELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNxxxxxxxxxxxxxxxxxxxxxDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1479 2.2.26 [Sep-21-2011]
A4IHD2 1396 Helicase ARIP4 OS=Xenopus yes no 0.471 0.5 0.349 1e-127
Q9Y4B4 1467 Helicase ARIP4 OS=Homo sa yes no 0.419 0.422 0.375 1e-126
Q99NG0 1466 Helicase ARIP4 OS=Mus mus yes no 0.429 0.433 0.379 1e-125
Q9GQN51311 Transcriptional regulator yes no 0.489 0.552 0.335 1e-123
Q7YQM3 2492 Transcriptional regulator N/A no 0.241 0.143 0.442 1e-86
Q7YQM4 2492 Transcriptional regulator no no 0.241 0.143 0.442 1e-86
P46100 2492 Transcriptional regulator no no 0.241 0.143 0.442 1e-86
Q61687 2476 Transcriptional regulator no no 0.241 0.144 0.445 2e-86
Q9DG67918 DNA repair and recombinat no no 0.350 0.565 0.325 1e-69
B4MX21784 DNA repair and recombinat N/A no 0.334 0.631 0.310 1e-69
>sp|A4IHD2|ARIP4_XENTR Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1 Back     alignment and function desciption
 Score =  456 bits (1174), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 293/838 (34%), Positives = 442/838 (52%), Gaps = 140/838 (16%)

Query: 667  VQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITG------YIVNVVREKGEEAVRIPSSI 720
            +Q S  +   N V  DGD++   S   + DA+         +VN+     E+ + +   +
Sbjct: 208  LQISDNADSTNEV--DGDITTENSGSHVNDALNQADHLGRVLVNINHPPNEKDIFLAPQL 265

Query: 721  SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780
            +  +K+HQ+ GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QVI+FL    +  
Sbjct: 266  ARAVKSHQIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQVISFLDVLFQHT 324

Query: 781  NLGLRTALIVTPVNVLHNWKQEFMKWRPS----------ELKPLRVFMLEDVSRDR---- 826
            +   +T L + PVN L NW  EF  W P           EL   R F +  ++ +     
Sbjct: 325  SA--KTVLAIVPVNTLQNWLAEFNMWLPPPESLPKDHNQELVQPRAFKVHTMNDEHKTTA 382

Query: 827  -RAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----------------------KDRNM 862
             RA+++  W   GGV L+GY  +R LS  K                         + + M
Sbjct: 383  ARAKVVNDWATDGGVLLMGYEMYRLLSLKKSFTAGRKKKSKKAAGPVIIDLDEEDRQQEM 442

Query: 863  AREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 921
             + I  AL + GPD+++CDE H IKN  A T+QALK ++ +RR+ LTG PLQNNL+EY+C
Sbjct: 443  LKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWC 502

Query: 922  MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 981
            MVDFVR  FLG+  EF N F+ PI NGQ  +ST +D ++M  RSH+L+  L+GFVQR   
Sbjct: 503  MVDFVRPDFLGTRQEFSNMFERPILNGQCVDSTPQDKRLMRYRSHVLHSLLEGFVQRRGH 562

Query: 982  NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL--- 1038
             V+K  LP K   VI V+LS +QR LY  F++            + R +  +G+  L   
Sbjct: 563  TVLKAQLPFKEEHVILVRLSKIQRDLYTEFMN------------RFRDAGNSGWLGLNPL 610

Query: 1039 ------AQIWNHPGILQLTKDKGYPSRE---DAEDSSSD------------ENMDYNVVI 1077
                   +IWNHP +L     K   + E   D ED  ++            E      ++
Sbjct: 611  KAFCVCCKIWNHPDVLYEALQKENLANEQDLDVEDLGTNNRCNAQSGKIKVEPNSLGALM 670

Query: 1078 GEKPRNMNDFLQG-------KNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC 1130
            GE        LQG       +  +     +W  ++L ++   +L  S KMVLL  ++   
Sbjct: 671  GETAHTKQ--LQGIVLNPSHEKANQVVTYEWAKEILSDYIPGQLQNSPKMVLLFHLIEES 728

Query: 1131 SNMGDKSLVFSQSIPTLDLIEFYLS--KLPRP----GKQGKLWKKGKDWYRLDGRTESSE 1184
              MGDK LVFSQS+ TL ++E +L+  K+P P    G++G  W +  ++YRLDG T +SE
Sbjct: 729  MRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASE 788

Query: 1185 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 1244
            R++L+ +FN+P N++V   L+STRAG LG+NL  ANRV++ D SWNP +D QA+ R +RY
Sbjct: 789  RERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRY 848

Query: 1245 GQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDE 1304
            GQ KP + YRL++  T+E+KIY RQ+TK+G++ RVVD        ++ E+ +L  F ++E
Sbjct: 849  GQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEE 908

Query: 1305 NPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK---HHPRWISN-YH 1360
             PD            S Q+ + +  H              E++L K    +P  I+    
Sbjct: 909  -PD-----------ASRQHLDSSSFH--------------EAVLQKACLQYPHLITKEPF 942

Query: 1361 EHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVD---ESISERKPASMSNL 1415
            +HE+LL + +E++L+  E+  A         +EE +R +V     S ++  PA   NL
Sbjct: 943  QHESLLLDRKEQKLTLAEKKAA------KRGYEEEKRASVPYTRPSYTQYYPAPDHNL 994
DNA helicase that modulates androgen receptor (AR)-dependent transactivation in a promoter-dependent manner.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q9Y4B4|ARIP4_HUMAN Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4 Back     alignment and function description
>sp|Q99NG0|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1 Back     alignment and function description
>sp|Q9GQN5|ATRX_DROME Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2 Back     alignment and function description
>sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1 Back     alignment and function description
>sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1 Back     alignment and function description
>sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5 Back     alignment and function description
>sp|Q61687|ATRX_MOUSE Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3 Back     alignment and function description
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1 Back     alignment and function description
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1479
3021435651477 unnamed protein product [Vitis vinifera] 0.970 0.972 0.749 0.0
3594880661507 PREDICTED: uncharacterized protein LOC10 0.974 0.956 0.745 0.0
2241257381404 chromatin remodeling complex subunit [Po 0.926 0.976 0.697 0.0
3565748921485 PREDICTED: transcriptional regulator ATR 0.979 0.975 0.693 0.0
2555619851447 conserved hypothetical protein [Ricinus 0.709 0.725 0.782 0.0
3341823911479 DEAD-like helicase domain-containing pro 0.935 0.935 0.618 0.0
98025541471 F22O13.8 [Arabidopsis thaliana] 0.929 0.934 0.613 0.0
3341823891458 DEAD-like helicase domain-containing pro 0.920 0.934 0.605 0.0
449470320 1628 PREDICTED: uncharacterized protein LOC10 0.746 0.678 0.726 0.0
1102891851476 SNF2 domain-containing protein, putative 0.926 0.928 0.567 0.0
>gi|302143565|emb|CBI22318.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2089 bits (5412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1100/1468 (74%), Positives = 1237/1468 (84%), Gaps = 32/1468 (2%)

Query: 37   SGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALH 96
            SGQDDGLHLE  LTEEEIEELIAEFL+VESKAAEAQE+LE ESL KL+ EVREELAQ L 
Sbjct: 3    SGQDDGLHLEVTLTEEEIEELIAEFLDVESKAAEAQESLEEESLSKLEIEVREELAQTLQ 62

Query: 97   GDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCC 156
            G+DLE AV +EM  +KE+WEA LDELETESAHLLEQLDGAGIELPSLY+ IE+Q PNGCC
Sbjct: 63   GNDLETAVAEEMANFKEEWEAVLDELETESAHLLEQLDGAGIELPSLYKWIESQAPNGCC 122

Query: 157  TEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDG 216
            TEAWK+R HW+GSQVT +  ESI  AE  LQT+RPVRRRHGKLLEEGASG+L  K+A+DG
Sbjct: 123  TEAWKQRVHWIGSQVTGDTTESIIEAEKHLQTDRPVRRRHGKLLEEGASGYLANKLASDG 182

Query: 217  SENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDE 276
            +     E ++++W S NK FS   SE    FGS+HWASVYLASTPQQAA MGLKFPGVDE
Sbjct: 183  NREAVTENAEVDWCSFNKCFSDHASEDSTLFGSEHWASVYLASTPQQAAVMGLKFPGVDE 242

Query: 277  VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRH 336
            VEEI+D+DGNS DPFVADAIANE+ + LSEEQ+KKF+KVKEEDDAN+DRKLQLHLKRRR+
Sbjct: 243  VEEIDDIDGNSSDPFVADAIANERAVDLSEEQKKKFKKVKEEDDANIDRKLQLHLKRRRY 302

Query: 337  RKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKT--DDGDMPGNNNEVALQNLETG 394
            RK S Q+ I   D   E+    +  L D S+++  +KT  D   +  NN++ A Q+ +T 
Sbjct: 303  RKRSTQETIQKEDRLAENILDNSVLLNDYSQAVLREKTRGDGVSISNNNDDGACQSSKTE 362

Query: 395  VLESSV------KERSLSNGISSV-SDSALPDSSELRGIKRSNESEEPNSEKKRSRTIII 447
            V ES        KER  SNG SSV S S LPDS+E +G KRS+++ E + + KR RT+II
Sbjct: 363  VSESLEMPDTLDKERPASNGNSSVLSGSVLPDSTETKGFKRSHDNGELDVDNKRFRTVII 422

Query: 448  GSDEADVVKDECS-------TKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVA 500
             SD+        S       TK+E  SV  E   D     SL S+ ++  F+CTACN VA
Sbjct: 423  DSDDETHEVGNVSNSLVNNMTKMEGQSVLQETEGDFVGSGSLPSKHMNGNFHCTACNKVA 482

Query: 501  IEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTC 560
            IEVH HP+L VI+C DCKCL+E+KMHVKD DCSECYC WCGRS+DLV CKSCKTLFC TC
Sbjct: 483  IEVHCHPLLKVIICGDCKCLIERKMHVKDPDCSECYCGWCGRSNDLVGCKSCKTLFCITC 542

Query: 561  VKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDAD 620
            +KRNI E CLSD V+AS WQCCCCSPSLL++LTSEL +A+GS +L VSSS+SDS++SD D
Sbjct: 543  IKRNIGEECLSD-VKASGWQCCCCSPSLLQQLTSELEKAIGSSSLTVSSSDSDSDDSDED 601

Query: 621  NNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 680
             N+ I  KR++KKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFS KSK+MN+ +
Sbjct: 602  INVAISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSEKSKMMNAAS 661

Query: 681  LDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENII 740
             +G+LS   S+EVLGDA  GYIVNVVREKGEEAVRIP SISAKLK HQ+ GIRFMWENII
Sbjct: 662  CNGNLSEDTSVEVLGDASKGYIVNVVREKGEEAVRIPPSISAKLKVHQITGIRFMWENII 721

Query: 741  QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 800
            QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS++LGLRTALIVTPVNVLHNW+
Sbjct: 722  QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWR 781

Query: 801  QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDR 860
            QEF+KWRP ELKPLRVFMLEDVSR+RRAELLAKWRAKGGVFLIGY+AFRNLS GK+VKDR
Sbjct: 782  QEFIKWRPLELKPLRVFMLEDVSRERRAELLAKWRAKGGVFLIGYSAFRNLSLGKNVKDR 841

Query: 861  NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920
            +MAREIC+ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY
Sbjct: 842  HMAREICYALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 901

Query: 921  CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 980
            CMVDFVREGFLGSSHEFRNRFQNPIENGQH NSTS+DVKIMNQRSHILYEQLKGFVQRMD
Sbjct: 902  CMVDFVREGFLGSSHEFRNRFQNPIENGQHMNSTSDDVKIMNQRSHILYEQLKGFVQRMD 961

Query: 981  MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK-SFFAGYQALA 1039
            M+VVK DLPPKTVFV+ VKLS LQR+LYKRFLD+HGFTND+VS++KIRK  FFAGYQALA
Sbjct: 962  MSVVKNDLPPKTVFVMAVKLSSLQRKLYKRFLDVHGFTNDKVSSDKIRKRCFFAGYQALA 1021

Query: 1040 QIWNHPGILQLTK-DKGYPSRED------AEDSSSDENMDYNVVIGEKPRNMNDFLQGKN 1092
            QIWNHPGILQLTK +K Y  RED      A+DSSSD+N+DYN V+GEK RN N+  QGK 
Sbjct: 1022 QIWNHPGILQLTKEEKDYARREDGVENFLADDSSSDDNIDYNTVLGEKVRNKNEIQQGKV 1081

Query: 1093 DDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEF 1152
            D G +QK WWNDLLHE+ YKE+DYSGKMVLLLDILTMC+++GDK+LVFSQS+ TLDLIE+
Sbjct: 1082 DSGLYQKGWWNDLLHENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEY 1141

Query: 1153 YLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212
            YLSKL R GK+GK WK+GKDWYRLDGRTE SERQKLVERFN+PLNKRVKCTLISTRAGSL
Sbjct: 1142 YLSKLSRQGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSL 1201

Query: 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272
            GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK
Sbjct: 1202 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1261

Query: 1273 EGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNC----AL 1328
            EGLAARVVDRQQVHRTISKEEMLHLF+FGDDENPD L    KE    ++QN       +L
Sbjct: 1262 EGLAARVVDRQQVHRTISKEEMLHLFDFGDDENPDILPERGKEEEHTTNQNMTGQVGNSL 1321

Query: 1329 KHKLPLSHEGC-SDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFR 1387
            K KL LSH  C SDKLMESLL +H+PRWI+NYHEHETLLQENEEE+LSKEEQDMAWEV+R
Sbjct: 1322 KDKLSLSHGSCSSDKLMESLLVRHYPRWIANYHEHETLLQENEEEKLSKEEQDMAWEVYR 1381

Query: 1388 KSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPR-GILRSHVVIRKCTNLSH 1446
            ++LEWEEVQRV +DES  ERKPA +SN  P   E+ S+++ +   LR+H+V RKCTNLSH
Sbjct: 1382 RTLEWEEVQRVPLDESTFERKPA-VSNAAPLVTESISLSETKISRLRNHLVQRKCTNLSH 1440

Query: 1447 KLTLRSQGTKPGCSTVCGECAQEISWEN 1474
             LTLRSQGTK GCSTVCGECAQEISWE+
Sbjct: 1441 MLTLRSQGTKVGCSTVCGECAQEISWED 1468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488066|ref|XP_002263799.2| PREDICTED: uncharacterized protein LOC100244360 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125738|ref|XP_002319663.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222858039|gb|EEE95586.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574892|ref|XP_003555577.1| PREDICTED: transcriptional regulator ATRX-like [Glycine max] Back     alignment and taxonomy information
>gi|255561985|ref|XP_002522001.1| conserved hypothetical protein [Ricinus communis] gi|223538805|gb|EEF40405.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|334182391|ref|NP_001184937.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182393|ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182395|ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9802554|gb|AAF99756.1|AC003981_6 F22O13.8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182389|ref|NP_172336.4| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190192|gb|AEE28313.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449470320|ref|XP_004152865.1| PREDICTED: uncharacterized protein LOC101218346 [Cucumis sativus] Back     alignment and taxonomy information
>gi|110289185|gb|ABB47753.2| SNF2 domain-containing protein, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1479
UNIPROTKB|K7GSF72372 LOC100514440 "Uncharacterized 0.275 0.172 0.413 9.8e-142
UNIPROTKB|F1MQ85 2473 ATRX "Uncharacterized protein" 0.275 0.164 0.413 1.1e-140
UNIPROTKB|F1PKC1 2489 ATRX "Uncharacterized protein" 0.275 0.163 0.413 2.9e-140
UNIPROTKB|F1LM36 2467 F1LM36 "Uncharacterized protei 0.275 0.165 0.413 1.3e-139
UNIPROTKB|E1C8H5 2434 ATRX "Uncharacterized protein" 0.275 0.167 0.415 2.1e-139
MGI|MGI:103067 2476 Atrx "alpha thalassemia/mental 0.275 0.164 0.413 6.8e-139
UNIPROTKB|P46100 2492 ATRX "Transcriptional regulato 0.275 0.163 0.411 9.2e-139
ZFIN|ZDB-GENE-030912-11 2011 atrx "alpha thalassemia/mental 0.275 0.202 0.400 1.6e-138
UNIPROTKB|F1RPI9988 LOC100514440 "Uncharacterized 0.275 0.412 0.412 4.8e-137
UNIPROTKB|E1C9631148 RAD54L2 "Uncharacterized prote 0.160 0.206 0.411 4.8e-108
UNIPROTKB|K7GSF7 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 820 (293.7 bits), Expect = 9.8e-142, Sum P(6) = 9.8e-142
 Identities = 177/428 (41%), Positives = 257/428 (60%)

Query:   639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
             L D +L  ET+  +   KE +ER K +  +   + KL   + ++        I       
Sbjct:  1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489

Query:   699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
             T  +++   E  E  V++  ++  KLK HQV G++FMW+   +S++K K    G GCILA
Sbjct:  1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548

Query:   759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
             H MGLGKT QV++FL+T +    L   TAL+V P+N   NW  EF KW+    + + L V
Sbjct:  1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608

Query:   817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
               L  V R + R+ +L +W+  GGV +IGY  +RNL+ G++VK R +      AL D GP
Sbjct:  1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668

Query:   875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
             D +VCDE H++KN  +  ++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS 
Sbjct:  1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728

Query:   935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
              EFRNRF NPI+NGQ  +ST  DV++M +R+HILYE L G VQR D   + K LPPK  +
Sbjct:  1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788

Query:   995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
             V+ V+++P+Q +LY+ +LD L G  N       K     F  +Q L++IW HP  LQL  
Sbjct:  1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848

Query:  1052 ---KDKGY 1056
                ++KGY
Sbjct:  1849 ISKENKGY 1856
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
UNIPROTKB|F1MQ85 ATRX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKC1 ATRX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LM36 F1LM36 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8H5 ATRX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:103067 Atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P46100 ATRX "Transcriptional regulator ATRX" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030912-11 atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RPI9 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C963 RAD54L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR923
chromatin remodeling complex subunit (1404 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1479
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-67
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 5e-67
cd11726127 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha 8e-46
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 2e-28
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 3e-23
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 3e-18
smart0049082 smart00490, HELICc, helicase superfamily c-termina 5e-17
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 8e-17
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-15
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-13
cd11672120 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD 1e-12
cd11725126 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine- 2e-07
cd11729137 cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine 2e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  230 bits (588), Expect = 1e-67
 Identities = 100/331 (30%), Positives = 158/331 (47%), Gaps = 39/331 (11%)

Query: 727  HQVVGIRFMW--ENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGL 784
            +Q+ G+ ++   E+             GLG ILA  MGLGKT Q IA L T ++      
Sbjct: 1    YQLEGVNWLISLES------------NGLGGILADEMGLGKTLQTIALLATYLKEGKDRR 48

Query: 785  RTALIVTPVNVLHNWKQEFMKWRPSELKPLRV--FMLEDVSRDRRAELLAKWRAKGGVFL 842
               L+V P++ LHNW  EF KW P     LRV  +  +   R +  + +AK      V +
Sbjct: 49   GPTLVVCPLSTLHNWLNEFEKWAP----ALRVVVYHGDGRERSKLRQSMAKRLDTYDVVI 104

Query: 843  IGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKC 901
              Y    ++      +      R            +V DEAH +KN+++   +ALK++K 
Sbjct: 105  TTYEVLRKDKKLLSLLNKVEWDR------------VVLDEAHRLKNSKSKLYKALKKLKT 152

Query: 902  QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIM 961
            + R+ LTG+P+QNNL E + +++F+R G  GS   F   F  PI N    ++ +++++  
Sbjct: 153  RNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTA--DNKNKNLEKG 210

Query: 962  NQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG-FTND 1020
             +  + L++ LK F+ R   + V+K LPPKT  V+   LS  QR+LYK+ L       + 
Sbjct: 211  KEGINRLHKLLKPFLLRRTKDDVEKSLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSF 270

Query: 1021 RVSNEKIR---KSFFAGYQALAQIWNHPGIL 1048
             V   +      S       L +I NHP + 
Sbjct: 271  AVEGGEKNVGIASLLNLIMQLRKICNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain Back     alignment and domain information
>gnl|CDD|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3) Back     alignment and domain information
>gnl|CDD|213037 cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 a (Dnmt3a) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1479
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766773 Hef nuclease; Provisional 99.98
KOG0298 1394 consensus DEAD box-containing helicase-like transc 99.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.94
PHA02558501 uvsW UvsW helicase; Provisional 99.94
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.93
KOG1123776 consensus RNA polymerase II transcription initiati 99.9
KOG0354746 consensus DEAD-box like helicase [General function 99.87
PTZ00110545 helicase; Provisional 99.85
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.85
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.84
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.84
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.84
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.84
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.83
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.83
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.83
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.82
PTZ00424401 helicase 45; Provisional 99.82
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.82
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.81
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.81
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.79
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.79
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.78
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.78
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.77
PRK13767 876 ATP-dependent helicase; Provisional 99.76
PRK106891147 transcription-repair coupling factor; Provisional 99.76
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.71
PRK02362737 ski2-like helicase; Provisional 99.71
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.7
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.7
PRK01172674 ski2-like helicase; Provisional 99.68
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.67
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.66
PRK00254720 ski2-like helicase; Provisional 99.66
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.63
COG4096 875 HsdR Type I site-specific restriction-modification 99.61
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.6
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.58
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.56
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.56
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.56
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.54
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.53
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.53
PHA02653675 RNA helicase NPH-II; Provisional 99.51
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.51
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.51
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.5
COG1205 851 Distinct helicase family with a unique C-terminal 99.5
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.49
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.49
COG4889 1518 Predicted helicase [General function prediction on 99.48
PRK05580679 primosome assembly protein PriA; Validated 99.47
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.45
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.44
PRK09401 1176 reverse gyrase; Reviewed 99.44
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.43
smart00487201 DEXDc DEAD-like helicases superfamily. 99.41
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.41
COG1204766 Superfamily II helicase [General function predicti 99.4
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.4
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.37
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.37
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.36
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.36
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.33
KOG4284 980 consensus DEAD box protein [Transcription] 99.32
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.32
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.32
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.32
PRK09694878 helicase Cas3; Provisional 99.31
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.31
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.27
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.26
KOG0347731 consensus RNA helicase [RNA processing and modific 99.26
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.24
smart0049082 HELICc helicase superfamily c-terminal domain. 99.23
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.23
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.22
COG1202830 Superfamily II helicase, archaea-specific [General 99.22
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.21
PRK14701 1638 reverse gyrase; Provisional 99.21
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.2
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.15
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.12
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.1
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.07
PRK05298652 excinuclease ABC subunit B; Provisional 99.05
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.04
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.03
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.01
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.99
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.98
KOG0334997 consensus RNA helicase [RNA processing and modific 98.97
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.89
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.89
KOG0346569 consensus RNA helicase [RNA processing and modific 98.88
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.87
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 98.83
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 98.81
KOG0327397 consensus Translation initiation factor 4F, helica 98.74
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 98.73
PRK12326764 preprotein translocase subunit SecA; Reviewed 98.73
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.6
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 98.59
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.58
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.56
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 98.54
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.45
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 98.45
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.41
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.4
COG0610962 Type I site-specific restriction-modification syst 98.39
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.18
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.16
PRK15483 986 type III restriction-modification system StyLTI en 98.1
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.06
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.04
KOG4299613 consensus PHD Zn-finger protein [General function 98.04
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.98
CHL00122 870 secA preprotein translocase subunit SecA; Validate 97.95
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 97.91
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.91
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 97.9
PF13871278 Helicase_C_4: Helicase_C-like 97.84
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.81
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 97.79
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 97.78
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 97.72
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.67
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 97.66
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.57
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.49
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 97.49
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 97.41
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 97.38
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 97.34
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 97.3
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 97.28
KOG1244336 consensus Predicted transcription factor Requiem/N 97.16
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.15
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.1
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.1
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.1
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.07
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 96.98
PRK10536262 hypothetical protein; Provisional 96.77
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 96.74
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.7
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 96.58
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 96.23
KOG1803649 consensus DNA helicase [Replication, recombination 96.04
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 95.9
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 95.86
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 95.73
COG3587 985 Restriction endonuclease [Defense mechanisms] 95.71
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 95.53
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 95.49
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 95.46
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 95.26
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.02
PRK14873665 primosome assembly protein PriA; Provisional 94.99
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 94.96
TIGR00376637 DNA helicase, putative. The gene product may repre 94.67
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 94.45
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 94.38
KOG1973274 consensus Chromatin remodeling protein, contains P 94.29
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 94.1
KOG1512381 consensus PHD Zn-finger protein [General function 94.01
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 93.84
KOG1131755 consensus RNA polymerase II transcription initiati 93.75
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 93.73
PRK04296190 thymidine kinase; Provisional 93.39
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 93.22
PRK10875615 recD exonuclease V subunit alpha; Provisional 93.18
KOG18051100 consensus DNA replication helicase [Replication, r 93.0
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 92.76
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 92.57
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 92.15
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 92.11
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 91.98
KOG08251134 consensus PHD Zn-finger protein [General function 91.98
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 91.01
smart00382148 AAA ATPases associated with a variety of cellular 90.79
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 90.64
PRK08116268 hypothetical protein; Validated 90.03
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 89.77
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 89.73
KOG4299613 consensus PHD Zn-finger protein [General function 89.31
CHL00181287 cbbX CbbX; Provisional 89.22
PRK06526254 transposase; Provisional 88.94
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 88.41
cd01124187 KaiC KaiC is a circadian clock protein primarily f 86.81
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 85.81
KOG4443694 consensus Putative transcription factor HALR/MLL3, 85.66
PF1324576 AAA_19: Part of AAA domain 85.52
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 85.36
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 85.29
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 85.09
PTZ001121164 origin recognition complex 1 protein; Provisional 84.94
KOG0957707 consensus PHD finger protein [General function pre 84.71
PHA02533534 17 large terminase protein; Provisional 84.62
PRK07952244 DNA replication protein DnaC; Validated 84.47
PF10497105 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida 83.95
smart00491142 HELICc2 helicase superfamily c-terminal domain. 83.83
TIGR02928365 orc1/cdc6 family replication initiation protein. M 83.65
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 83.2
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 83.06
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 82.49
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 82.44
PLN03025319 replication factor C subunit; Provisional 82.39
smart00492141 HELICc3 helicase superfamily c-terminal domain. 82.23
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 82.02
PRK12402337 replication factor C small subunit 2; Reviewed 81.86
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 81.37
PRK05707328 DNA polymerase III subunit delta'; Validated 81.36
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 81.26
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 81.2
PRK08769319 DNA polymerase III subunit delta'; Validated 80.72
PRK14087450 dnaA chromosomal replication initiation protein; P 80.35
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 80.33
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 80.2
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-204  Score=1798.48  Aligned_cols=1318  Identities=32%  Similarity=0.418  Sum_probs=1092.9

Q ss_pred             cccccccccccCCCccccCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000464           10 KHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVRE   89 (1479)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (1479)
                      +++..+++.+.+..+ ++.++.++.-+...+++..++.++..+++.+++..++.++++.                     
T Consensus        70 ~~~~~~~~~~~~~~t-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------  127 (1567)
T KOG1015|consen   70 EQSFTSLEVRKVAET-KEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQS---------------------  127 (1567)
T ss_pred             hhhHHHHHHHhhhhc-cccchhhhhHhhhhhcccchhhhhhHhhhhcchhhhHHHHHHH---------------------
Confidence            344555555555554 7888888999999999999999999999999999988887753                     


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhccCCCchhHHHHHHhhCCCccchHhhhcccccccc
Q 000464           90 ELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGS  169 (1479)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (1479)
                                 ..||+.+|.+|+-+|++.++|+++||+.+++|++++|+|||-||+.|++++|++|.||+|++++||+|+
T Consensus       128 -----------~~~~~~~~~~~~~~~~~~~~e~~~es~s~~~~~~~~~~e~~~~~~gik~~~~~~td~e~~~~~~~d~~~  196 (1567)
T KOG1015|consen  128 -----------KKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTS  196 (1567)
T ss_pred             -----------hHhHHhhcCCchhHHHHHHHHHhhhcccchhhhccccccccchhhhhcccCCCCcchhhcccccccccc
Confidence                       457889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHhhHhhhhhcchhhhcccchhccccccccchhccCCCCCCCCcccccccccchhhhccCCcccccccccc
Q 000464          170 QVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGS  249 (1479)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (1479)
                      +++.+..||..+++-.+.+++|+++||||+++||++||++|++......+.....++.+|.+.|+-+.+++ ...-.||+
T Consensus       197 ~~~ve~sES~~~s~~~~esed~~~~r~~kn~~egrekk~~K~l~k~~~k~~~~~ssd~dk~sakk~~~~ss-dE~v~~~e  275 (1567)
T KOG1015|consen  197 KKKVELSESAEKSTGKGESEDSSEDRKSKNGAEGREKKRCKLLGKSSRKRQDCSSSDTDKYSAKKDGCNSS-DERVKRIE  275 (1567)
T ss_pred             ceehhhhhhhhhccccccccCcchhhhhhhhhhhhhhHHHHHhccchhhhcccCCCchhhhhhhhcccccc-cccchhhh
Confidence            99999999999999999999999999999999999999999999876655566889999999999999988 88899999


Q ss_pred             ccceeeeecCCHHHHHHccCCCCCCccccccccccCCCCChhHHHHhcchhhhcccHHHHHhhcccccchhhhhhHHHHH
Q 000464          250 KHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQL  329 (1479)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (1479)
                      ..|+++||||+|.++++||+.||||.|++|++|++...++||.+++|-+|+|..+.++|...|..+.||||...++-+|.
T Consensus       276 ~~pr~~llsS~ktkerasg~s~sd~~es~E~ed~kksk~s~~~k~vi~keKern~k~a~~ts~s~~eeeDde~es~~~~~  355 (1567)
T KOG1015|consen  276 LRPRRNLLSSRKTKERASGSSSSDAEESSEDEDKKKSKTSSKKKAVIVKEKERNRKQADITSSSSSEEEDDEQESIGEGS  355 (1567)
T ss_pred             hhhHhhhccCcchhhhhccCCcCCccccchhhhhhhhccchhhhhhhhHHHHhhhhhhhcccccccchhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHhhhhhcccccccccccccccccccccccccccccccCCCCCCCCCCCCCchhhhhhcccccccccccccccCCCC
Q 000464          330 HLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGI  409 (1479)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (1479)
                      +|+++++.++.+|+.++++ .++.++++..+-               -.|..|        -.        +.....+++
T Consensus       356 ~lkkk~kqk~~kq~sskss-ees~dd~~~r~~---------------kk~t~n--------~a--------Ka~~ss~eT  403 (1567)
T KOG1015|consen  356 SLKKKIKQKSGKQASSKSS-EESVDDPENRIA---------------KKMTLN--------EA--------KANLSSDET  403 (1567)
T ss_pred             cchHhhhhccchhhhhhcc-hhccccHHHHhh---------------hhcchH--------HH--------HhhhcCCCc
Confidence            9999999999999999888 556666654420               000000        00        001112222


Q ss_pred             cccCCCCCCCchhhhcccccCCCCCCCcccccceEEEecCCCcccccccccccccCCCCCccccccccccccccccCCCC
Q 000464          410 SSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSE  489 (1479)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~sd~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  489 (1479)
                      +..     -|+.| +++|++....+..+..+.+.+-+ +++..                            +-..+.--.
T Consensus       404 s~~-----s~esE-~~sk~sgk~~es~~~~e~~s~~~-n~~s~----------------------------~dsk~~~k~  448 (1567)
T KOG1015|consen  404 SSS-----SDESE-EGSKRSGKQNESNPGDEEASNQV-NSESD----------------------------SDSKESKKP  448 (1567)
T ss_pred             ccc-----ccccc-cchhhhcccccCCCCcccccccc-ccccc----------------------------cccccccCc
Confidence            211     11222 34444433333333333322211 11110                            001222234


Q ss_pred             ceeeccCCcccccccccccccccccccchhhhhhcCcccCCCCCcccccccCCCCceeecCCcccccchhhhcccCCccc
Q 000464          490 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC  569 (1479)
Q Consensus       490 ~~~C~~Cg~~~~~~~~HP~l~v~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~L~~Cd~C~r~Fc~~Cl~~~~g~~~  569 (1479)
                      .+.|+.|.+.......||...++.|+.|...... .-...++..+..|.||+..-.+.-|..|++.||..|+.++.+...
T Consensus       449 ~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~~-~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e~~~esd~Ev  527 (1567)
T KOG1015|consen  449 RYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRRK-VSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKEAELESDQEV  527 (1567)
T ss_pred             chhhhhhcchhhcccccchhhhcchhhhccchhh-hcccccccchhhcccccCccccchhhhcccccchHHHhhccchhh
Confidence            4779999999888999999999999998765543 344556667779999999999999999999999999999999998


Q ss_pred             ccccccCCCceeecCCchhHHHHHHHHHHhhcCcccccCCCCCCCCCCccccccccccchhhhhhhhhhcccccccHHHH
Q 000464          570 LSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETK  649 (1479)
Q Consensus       570 ~~~~~~~~~W~C~~C~p~~l~~L~~~~~~~~~~~~~~~~~s~~~~d~sd~~~~~~~~~~~k~rk~ir~il~d~~l~e~tk  649 (1479)
                      ++ ....-.|.|.+|++.+.+  .++.++.+........+++..++.+.+..|....+|.|+||+||+||+|++|+.+|+
T Consensus       528 mp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~  604 (1567)
T KOG1015|consen  528 MP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQ  604 (1567)
T ss_pred             hh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHH
Confidence            88 555567999999999988  677777777765555444444433333366677788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH---HHHhhhhhhcccccccCCCCCCCchhhhhccccccchhhhccccCCcccccCchhhhhccH
Q 000464          650 RKIAIEKERQERLKSL---QVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKA  726 (1479)
Q Consensus       650 ~~~~~ek~r~~rl~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ev~~~~~~~~i~~~~~~~~~~~v~vP~~L~~~LrP  726 (1479)
                      .++++|++|++||+..   ++.++.+     .+.....++++        ...++|+++..+..++.+.||..|...|+|
T Consensus       605 ~a~k~EkeRrkRie~~~~rqK~~n~i-----~ied~s~~~e~--------it~~lVld~deet~e~~VqV~rslv~kLKp  671 (1567)
T KOG1015|consen  605 NALKEEKERRKRIEEERERQKLRNVI-----EIEDASPTKEP--------ITTKLVLDEDEETKEPLVQVHRSLVIKLKP  671 (1567)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcee-----eeccCCCCccc--------cceeEEecchhhhccchhhccHhHHhhcCc
Confidence            9999999999999983   3333321     12222333332        233788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEcCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHh
Q 000464          727 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW  806 (1479)
Q Consensus       727 hQ~eGV~~M~~~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlL~~ll~~~~~~~k~vLIV~P~sLl~qW~~E~~kw  806 (1479)
                      ||..||+|||+++++++.|. ...+|.||||||+||||||+|+|+|+++++.....+++++|||||.+++.||.+||.+|
T Consensus       672 HQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekW  750 (1567)
T KOG1015|consen  672 HQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKW  750 (1567)
T ss_pred             ccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHh
Confidence            99999999999999999997 55799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEeccccccccccccccchhhHHHHHhhh-cCCCCEEEEcCC
Q 000464          807 RPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL-QDGPDILVCDEA  882 (1479)
Q Consensus       807 ~P~--~~~~l~V~~l~g~~~-~~r~~~l~~w~~~~~VvItsYe~fr~l~~~k~~kd~~~~~~l~~lL-~~~~dlVIlDEA  882 (1479)
                      .++  ...++.|+.+...++ ..|...+..|+..++|+|++|++||+|..++.++.+.....+...+ .++||+||||||
T Consensus       751 m~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~  830 (1567)
T KOG1015|consen  751 MEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG  830 (1567)
T ss_pred             cccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecch
Confidence            995  334789999888776 7888999999999999999999999999999988887555555444 459999999999


Q ss_pred             cccCCcchHHHHHHHhcccceEEEeeCCCCccchhHHHhhhhhhccCCCCChHHHHhhhcCCcccCCCCCCChHHHHHHH
Q 000464          883 HMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMN  962 (1479)
Q Consensus       883 H~IKN~~Sk~skalk~Lka~rRllLTGTPLqNnL~EL~sLL~FL~P~~Lgs~~eF~~~F~~PI~~g~~~dst~~dv~~~~  962 (1479)
                      |.|||..|.+++|+.+++++|||+|||||+||||+|||||++|++|++||+..+|+|+|.+||.+|++.+++..++++|+
T Consensus       831 HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk  910 (1567)
T KOG1015|consen  831 HILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMK  910 (1567)
T ss_pred             hhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhhhhhhhhHhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc--cchHHHHhhHHHHHHHHHH
Q 000464          963 QRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR--VSNEKIRKSFFAGYQALAQ 1040 (1479)
Q Consensus       963 ~r~~~L~~~L~~fvlRr~k~dv~~~LPpK~e~vv~v~LS~~Qr~LY~~~l~~~~~~~~~--~~~~~~~~s~l~~l~~Lrk 1040 (1479)
                      +|+|+|+.+|++||+|+++.+|.++||||++|||.|.||+.|+.||.+|+++ .+....  ....+...++|..|+.|++
T Consensus       911 ~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h-~~~~G~d~eg~~g~~arlf~dfqmlsr  989 (1567)
T KOG1015|consen  911 KRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDH-LTGVGNDSEGGRGAGARLFQDFQMLSR  989 (1567)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhh-ccccCCccccccchhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999993 332221  1223466789999999999


Q ss_pred             HhcCcchhhhccc----cCCCCCcc---c--cCCC----------------------Cccccccccccc------CCCcc
Q 000464         1041 IWNHPGILQLTKD----KGYPSRED---A--EDSS----------------------SDENMDYNVVIG------EKPRN 1083 (1479)
Q Consensus      1041 IcnHP~Ll~~~~~----~~~~~~ed---~--dd~~----------------------~d~~~d~~~~~~------ek~~~ 1083 (1479)
                      ||+||+.++....    ..+....+   .  ++++                      .|+........+      .+.+.
T Consensus       990 IwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk 1069 (1567)
T KOG1015|consen  990 IWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRK 1069 (1567)
T ss_pred             HhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhh
Confidence            9999999876433    11111111   0  1110                      011112111111      11111


Q ss_pred             chhhhcC------------------C----CCCccchhhhhhhhhhhccccccccChhHHHHHHHHHHhhcCCCeEEEEc
Q 000464         1084 MNDFLQG------------------K----NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 1141 (1479)
Q Consensus      1084 ~~d~~~~------------------~----~~~~~~~~~~~~~ll~~~~~~~i~~S~Kl~~L~eIL~~~~~~G~KVLIFS 1141 (1479)
                      .+++..+                  .    ....-.+..||.+++....+..+.+|+||.+|++||..+.+.|+|+||||
T Consensus      1070 ~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFS 1149 (1567)
T KOG1015|consen 1070 SRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFS 1149 (1567)
T ss_pred             ccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEee
Confidence            1111111                  0    01112345799999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHhcCCCCCC-----------CcccccCCccEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccc
Q 000464         1142 QSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1210 (1479)
Q Consensus      1142 Q~~~tLdlLe~~L~~l~~~~~-----------~~~~w~~Gi~y~rLdGsts~~eRq~lI~~FN~~~n~~v~VfLISTkAG 1210 (1479)
                      |++.+|++|+.||..+.+.++           .| .|..|.+|+||||++...+|++++++||++.|-++++|||||+||
T Consensus      1150 QSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eG-kW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAG 1228 (1567)
T KOG1015|consen 1150 QSLISLDLIEDFLELVSREGKEDKDKPLIYKGEG-KWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAG 1228 (1567)
T ss_pred             cccchhHHHHHHHHhhcccCcccccccccccccc-ceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccC
Confidence            999999999999998876655           34 499999999999999999999999999999999999999999999


Q ss_pred             ccccCccccCEEEEEeCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 000464         1211 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTIS 1290 (1479)
Q Consensus      1211 GeGLNLt~AnrVIifDp~WNPa~d~QAIGRa~RiGQkK~V~VYRLIa~gTIEEkI~~rq~~K~~La~rVVd~~~~~r~~s 1290 (1479)
                      ++||||.+||||||||.+|||+++.|+|+|+||+||+|||||||||+.||||++||.||+.|+.++.||||.+|+.|||+
T Consensus      1229 sLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~ 1308 (1567)
T KOG1015|consen 1229 SLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYT 1308 (1567)
T ss_pred             ccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCCCCChhhhhhhccCCCCCCCcccccccCCCCCCCCCchHHHHHHhcccCCCccccccccchhccccc
Q 000464         1291 KEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENE 1370 (1479)
Q Consensus      1291 ~~EL~~Lf~~~~de~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~~ll~~~~~~~i~~~~eh~sll~~~~ 1370 (1479)
                      ++||.+||.|.|+. .|+-.+                     ..++.+|+|++++.++..| .+.|+.||+|+|||.+.+
T Consensus      1309 ~neLteLy~fep~~-ddp~sE---------------------r~~~~lpKdrllae~l~~~-q~~i~~y~ehdSll~~~e 1365 (1567)
T KOG1015|consen 1309 MNELTELYTFEPDL-DDPNSE---------------------RDTPMLPKDRLLAELLQIH-QEHIVGYHEHDSLLDHKE 1365 (1567)
T ss_pred             HhhhHHHhhcCCcc-CCcccc---------------------cccccCCchhHHHHHHHHH-HHHhhhhhhhhhhhcchh
Confidence            99999999999852 111000                     1234466999999999988 788999999999999999


Q ss_pred             cccCCHHHHHHHHHHHHHhh------------------------------------------------hhhccccccccC
Q 000464         1371 EERLSKEEQDMAWEVFRKSL------------------------------------------------EWEEVQRVTVDE 1402 (1479)
Q Consensus      1371 ee~lt~ee~~~a~~~y~~~~------------------------------------------------~~~~~~~~~~~~ 1402 (1479)
                      +++||++|++.||.+|+...                                                +|+.++|+|...
T Consensus      1366 ~eelteee~k~aWaeye~Ek~~~~~r~~~pt~t~~p~~~~~q~~Q~~~~nR~~~~~~~nq~~~d~~~~e~ekv~r~~ns~ 1445 (1567)
T KOG1015|consen 1366 EEELTEEERKAAWAEYEAEKKVLTMRFNIPTGTNLPPVSFNQQTQYIPFNRGALSAMSNQQLEDLINQEREKVVRATNSV 1445 (1567)
T ss_pred             HHHHHHHhhhhhhhhHHhhhccccccccCCCCCCCCccchhhhhhhhhhhhhhhhhhhHHHHHHHHhhhhhheeecccCc
Confidence            99999999999999999864                                                344444444444


Q ss_pred             ccccCCccCCCCCCCCCCCCCCccCCccccchhhhHhhhccchhHHHHhhcCCCCCcccccchhccccccchhccc
Q 000464         1403 SISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVA 1478 (1479)
Q Consensus      1403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 1478 (1479)
                      .++-..|. ..-++.+.+++..+      .|++|+++.||...|.+|++++|-++|-.++|++|+..+.|++.-.+
T Consensus      1446 tavr~~pl-~~ll~~il~~~~~~------nr~qv~~~n~trqa~qetd~k~~~~~~~dll~~~~~~v~~v~~m~~~ 1514 (1567)
T KOG1015|consen 1446 TAVRIQPL-EDLLSAILKENMNL------NRAQVQALNLTRQASQETDVKRREAIYNDLLTKQQMLVSCVQRMLMN 1514 (1567)
T ss_pred             cceeeccc-HHHHhhhccccchh------hHhhhHhhhhHHHHHHHHhhhccchhhHHHHHhhcceeeeHHHHHhc
Confidence            44444444 33333333444333      89999999999999999999999999999999999999999976543

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1479
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 3e-67
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-44
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 3e-24
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-16
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 3e-23
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-15
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 5e-17
3ql9_A129 Monoclinic Complex Structure Of Atrx Add Bound To H 8e-09
2ld1_A142 Structures And Chemical Shift Assignments For The A 2e-04
2jm1_A141 Structures And Chemical Shift Assignments For The A 2e-04
3a1a_A144 Crystal Structure Of The Dnmt3a Add Domain Length = 8e-04
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 187/631 (29%), Positives = 310/631 (49%), Gaps = 93/631 (14%)
Query: 688  GASIEVLGDAITGY-IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKV 746
            GA +     AI+ + ++   +EK    V +   +S  L+ HQ  G++F+W+ +  + R++
Sbjct: 19   GALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCV--TGRRI 76
Query: 747  KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEF 803
            ++     GCI+A  MGLGKT Q I  ++T ++        +   ++V+P +++ NW  E 
Sbjct: 77   ENS---YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133
Query: 804  MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG------VFLIGYTAFRNLSFGKHV 857
             KW    ++P+ +   +  S+D     L  + ++ G      + +I Y  FR        
Sbjct: 134  GKWLGGRVQPVAI---DGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFR-------- 182
Query: 858  KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 917
                +  E+ H  + G  +++CDE H +KN+   T  AL  +  QRR+ ++G+P+QN+L+
Sbjct: 183  ----LHAEVLHKGKVG--LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLL 236
Query: 918  EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQ 977
            EY+ +V FV  G LG++ EF+ RF+ PI  G+  +++ +D     Q+   L   +   + 
Sbjct: 237  EYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLI 296
Query: 978  RMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 1037
            R   +++ K LP K   V+   L+PLQ+ LYK FL       + +   KI  S  +   +
Sbjct: 297  RRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLK-QAKPVESLQTGKISVSSLSSITS 355
Query: 1038 LAQIWNHPGILQ---LTKDKGYPSRXXXXXXXXXXNMDYNVVIGEKPRNMNDFLQGKNDD 1094
            L ++ NHP ++    LT ++G+                                 G  D 
Sbjct: 356  LKKLCNHPALIYEKCLTGEEGF--------------------------------DGALD- 382
Query: 1095 GFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFY 1153
              F +++    +      E   SGKM++L  IL M  +   DK ++ S    TLDL E  
Sbjct: 383  -LFPQNYSTKAV------EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE-- 433
Query: 1154 LSKLPRPGKQGKLWKKGKDWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212
                       KL +  +  Y RLDG     +R K+VERFN P +      ++S++AG  
Sbjct: 434  -----------KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEF-IFMLSSKAGGC 481
Query: 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272
            G+NL  ANR+++ D  WNP  D QA+ R WR GQ K  + YRL++ GT+EEKI +RQ  K
Sbjct: 482  GLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541
Query: 1273 EGLAARVVDRQQ-VHRTISKEEMLHLFEFGD 1302
            + L++ VVD +Q V R  S  E+  LF   +
Sbjct: 542  KALSSCVVDEEQDVERHFSLGELRELFSLNE 572
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|3QL9|A Chain A, Monoclinic Complex Structure Of Atrx Add Bound To Histone H3k9me3 Peptide Length = 129 Back     alignment and structure
>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add Domain Of The Atrx Protein Length = 142 Back     alignment and structure
>pdb|2JM1|A Chain A, Structures And Chemical Shift Assignments For The Add Domain Of The Atrx Protein Length = 141 Back     alignment and structure
>pdb|3A1A|A Chain A, Crystal Structure Of The Dnmt3a Add Domain Length = 144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1479
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-146
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-73
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-59
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 3e-52
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-39
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 5e-42
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 2e-05
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 4e-32
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 3e-26
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 1e-25
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 7e-25
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 8e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 8e-15
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 4e-06
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 4e-05
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 1e-04
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 1e-04
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 4e-04
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 7e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  461 bits (1188), Expect = e-146
 Identities = 174/619 (28%), Positives = 278/619 (44%), Gaps = 86/619 (13%)

Query: 701  YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
             ++   +EK    V +   +S  L+ HQ  G++F+W+ +       +  +   GCI+A  
Sbjct: 33   DLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTG-----RRIENSYGCIMADE 87

Query: 761  MGLGKTFQVIAFLYTAMRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 817
            MGLGKT Q I  ++T ++        +   ++V+P +++ NW  E  KW    ++     
Sbjct: 88   MGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQ---PV 144

Query: 818  MLEDVSRDRRAELLAKW------RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
             ++  S+D     L  +      R    + +I Y  FR                    L 
Sbjct: 145  AIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFR--------LHAE-------VLH 189

Query: 872  DGP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930
             G   +++CDE H +KN+   T  AL  +  QRR+ ++G+P+QN+L+EY+ +V FV  G 
Sbjct: 190  KGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGI 249

Query: 931  LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
            LG++ EF+ RF+ PI  G+  +++ +D     Q+   L   +   + R   +++ K LP 
Sbjct: 250  LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPV 309

Query: 991  KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
            K   V+   L+PLQ+ LYK FL       + +   KI  S  +   +L ++ NHP ++  
Sbjct: 310  KIEQVVCCNLTPLQKELYKLFLK-QAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368

Query: 1051 TKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHT 1110
                G    + A D          V                                   
Sbjct: 369  KCLTGEEGFDGALDLFPQNYSTKAVEP--------------------------------- 395

Query: 1111 YKELDYSGKMVLLLDILT-MCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
                  SGKM++L  IL    +   DK ++ S    TLDL E                 +
Sbjct: 396  ----QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR------------NR 439

Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
               + RLDG     +R K+VERFN P +      ++S++AG  G+NL  ANR+++ D  W
Sbjct: 440  RYLYVRLDGTMSIKKRAKIVERFNNP-SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW 498

Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHRT 1288
            NP  D QA+ R WR GQ K  + YRL++ GT+EEKI +RQ  K+ L++ VVD  Q V R 
Sbjct: 499  NPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERH 558

Query: 1289 ISKEEMLHLFEFGDDENPD 1307
             S  E+  LF   +    D
Sbjct: 559  FSLGELRELFSLNEKTLSD 577
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1479
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-40
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-38
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 4e-26
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 2e-19
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 8e-12
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 3e-10
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 1e-07
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 2e-06
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 4e-06
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 4e-05
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 0.001
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  150 bits (379), Expect = 1e-40
 Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 19/275 (6%)

Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
           +EK    V +   +S  L+ HQ  G++F+W+ +       +  +   GCI+A  MGLGKT
Sbjct: 39  KEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTG-----RRIENSYGCIMADEMGLGKT 93

Query: 767 FQVIAFLYTAMRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
            Q I  ++T ++        +   ++V+P +++ NW  E  KW    ++P+ +      S
Sbjct: 94  LQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAID---GGS 150

Query: 824 RDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAH 883
           +D     L  + ++ G+ +       +    +   +     ++           +CDE H
Sbjct: 151 KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLV--------ICDEGH 202

Query: 884 MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN 943
            +KN+   T  AL  +  QRR+ ++G+P+QN+L+EY+ +V FV  G LG++ EF+ RF+ 
Sbjct: 203 RLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEI 262

Query: 944 PIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQR 978
           PI  G+  +++ +D     Q+   L   +   + R
Sbjct: 263 PILKGRDADASDKDRAAGEQKLQELISIVNRCLIR 297
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1479
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.89
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.83
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.81
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.76
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.73
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.73
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.68
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.65
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.63
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.62
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.59
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.59
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.53
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.43
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.38
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.33
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.31
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.27
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.22
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.15
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.13
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.12
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.9
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 98.83
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.81
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.77
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.73
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.69
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.68
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.66
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.66
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.64
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.54
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.53
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.44
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.41
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.36
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.31
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.26
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.96
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.64
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.18
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.94
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.93
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 96.91
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.75
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 96.64
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.16
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 95.82
d1wema_76 Death associated transcription factor 1, Datf1 (DI 95.67
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 95.49
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 95.33
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 95.29
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 94.47
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 94.15
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 93.29
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 92.77
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 91.27
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 86.97
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 84.31
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 83.76
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 83.13
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=395.90  Aligned_cols=276  Identities=36%  Similarity=0.536  Sum_probs=222.4

Q ss_pred             HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf             66741199972899973399999999999997505545321237887429999999999944810100000169999755
Q 000464          982 NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRED 1061 (1479)
Q Consensus       982 ~dv~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed 1061 (1479)
                      .++.+.||||++++++|+||+.|+++|+.++......... .......+.+..++.||++||||.|+.............
T Consensus         3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~-~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~   81 (346)
T d1z3ix1           3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDG   81 (346)
T ss_dssp             GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTT
T ss_pred             HHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf             1333408898799999697999999999999989999865-448716899999999999957998861111022112320


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf             5578875334421113688755011101799986311233444321001112355705999999999731-189909999
Q 000464         1062 AEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS-NMGDKSLVF 1140 (1479)
Q Consensus      1062 ~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~i~~SgKl~~L~eIL~~~~-~~G~KVLIF 1140 (1479)
                      ..+.                      ...    ..           .........|+|+.+|.++|..+. ..|+|||||
T Consensus        82 ~~~~----------------------~~~----~~-----------~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIF  124 (346)
T d1z3ix1          82 ALDL----------------------FPQ----NY-----------STKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLV  124 (346)
T ss_dssp             GGGT----------------------SCS----SC-----------CSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             HHHH----------------------CCC----CC-----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             0331----------------------233----41-----------0000140017899999999999887518951688


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             07531699999998209999987633237962798418889999999999980889997149996346454344734468
Q 000464         1141 SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1220 (1479)
Q Consensus      1141 SQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~An 1220 (1479)
                      |+|+.++++|+.+|..            .|+.|.+++|+++..+|+.+++.||++.++ ..|||+|++|||+||||++||
T Consensus       125 s~~~~~ld~l~~~l~~------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~-~~vlLls~~agg~GlnL~~a~  191 (346)
T d1z3ix1         125 SNYTQTLDLFEKLCRN------------RRYLYVRLDGTMSIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGAN  191 (346)
T ss_dssp             ESCHHHHHHHHHHHHH------------HTCCEEEECSSCCHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEE
T ss_pred             EEHHHHHHHHHHHHHH------------HHCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CEEEEECCHHHHHCCCCCCCE
T ss_conf             6301456799999763------------002411011100278899999865102343-302540331444335656430


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHCCC
Q ss_conf             8999908999324988747341029988589999982899799999999999999998805432-134579989986006
Q 000464         1221 RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEEMLHLFE 1299 (1479)
Q Consensus      1221 rVIi~D~~WNPs~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd~~~-~~r~ls~~EL~~LF~ 1299 (1479)
                      +||+||++|||+.+.||+||+||+||+++|+||||++.|||||+||++|..|+.++..|++..+ ..+.|+.++|.+||+
T Consensus       192 ~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~lf~  271 (346)
T d1z3ix1         192 RLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFS  271 (346)
T ss_dssp             EEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTC
T ss_pred             EEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHC
T ss_conf             79994578861558676333403489984389998738989999999999999999987588655540289999999964


Q ss_pred             CCCCCCCCH
Q ss_conf             899989980
Q 000464         1300 FGDDENPDP 1308 (1479)
Q Consensus      1300 ~~~de~~d~ 1308 (1479)
                      +.++...++
T Consensus       272 ~~~~~~~~t  280 (346)
T d1z3ix1         272 LNEKTLSDT  280 (346)
T ss_dssp             CCSSCSCHH
T ss_pred             CCCCCCCCC
T ss_conf             787654201
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure