Citrus Sinensis ID: 000473
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1471 | 2.2.26 [Sep-21-2011] | |||||||
| Q920I9 | 1489 | WD repeat-containing prot | yes | no | 0.237 | 0.234 | 0.221 | 1e-10 | |
| Q9Y4E6 | 1490 | WD repeat-containing prot | yes | no | 0.237 | 0.234 | 0.216 | 1e-10 | |
| Q9ERH3 | 1488 | WD repeat-containing prot | yes | no | 0.245 | 0.242 | 0.218 | 7e-10 | |
| Q9WUC8 | 514 | Pleiotropic regulator 1 O | no | no | 0.099 | 0.285 | 0.329 | 1e-06 | |
| Q922V4 | 513 | Pleiotropic regulator 1 O | no | no | 0.099 | 0.286 | 0.329 | 1e-06 | |
| O43660 | 514 | Pleiotropic regulator 1 O | no | no | 0.099 | 0.285 | 0.329 | 1e-06 | |
| Q2KID6 | 513 | Pleiotropic regulator 1 O | no | no | 0.099 | 0.286 | 0.329 | 1e-06 | |
| Q12417 | 451 | Pre-mRNA-splicing factor | yes | no | 0.080 | 0.263 | 0.304 | 1e-06 | |
| O13615 | 473 | Pre-mRNA-splicing factor | yes | no | 0.088 | 0.274 | 0.313 | 7e-06 | |
| Q5BE22 | 452 | Pre-mRNA-splicing factor | yes | no | 0.101 | 0.329 | 0.289 | 1e-05 |
| >sp|Q920I9|WDR7_MOUSE WD repeat-containing protein 7 OS=Mus musculus GN=Wdr7 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 162/416 (38%), Gaps = 67/416 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S +++W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKN---------------GDKQENFTT 849
Q IK + P I L FD+ +L+ E++ N DK +F T
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLT 735
Query: 850 -------MEHGTETAGPN------AMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSL 896
+ ET N + D+ E+ KS +L ++L
Sbjct: 736 GKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNL 795
Query: 897 SF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 943
+ LH W ++ LD++ + + + +P + V+ GL G ++L PG
Sbjct: 796 TMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPG 850
|
Mus musculus (taxid: 10090) |
| >sp|Q9Y4E6|WDR7_HUMAN WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 163/416 (39%), Gaps = 67/416 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S +++W + TGA +R + G + + + + + +++S+S +N
Sbjct: 578 GCSDGS--------VYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKN---------------GDKQENFTT 849
Q IK + P I L FD+ +L+ E++ N DK +F T
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLT 735
Query: 850 MEHGTETAGPNAMTAADGSNGHSMST-------------DTIEEHTWIKSLEECILRFSL 896
+ T + H + ++ E+ KS +L ++L
Sbjct: 736 GKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYNL 795
Query: 897 SF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 943
+ LH W ++ LD++ + + + +P + V+ GL G ++L PG
Sbjct: 796 TMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPG 850
|
Homo sapiens (taxid: 9606) |
| >sp|Q9ERH3|WDR7_RAT WD repeat-containing protein 7 OS=Rattus norvegicus GN=Wdr7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 170/431 (39%), Gaps = 70/431 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCVCSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S + +W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VCVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGD--KQENFTTMEHGTETAGPNAM 862
Q IK + P I L FD+ +L+ E++ N EN G+ G + +
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKAS-GSSDKGGSFL 734
Query: 863 TAADGSNGHSMSTDTIEEHTWI---------------------------KSLEECILRFS 895
T + +TI+E+ KS +L ++
Sbjct: 735 TGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEVMRQRREESDPEYRASKSKPLTLLEYN 794
Query: 896 LSF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGL-K 945
L+ LH W ++ LD++ + + + +P + V+ GL G ++L PG +
Sbjct: 795 LTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPGYNQ 853
Query: 946 AGLELWKSSSE 956
A +L ++ +E
Sbjct: 854 AAGKLLQAKAE 864
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH--LSAVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 349
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Rattus norvegicus (taxid: 10116) |
| >sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH--LSAVYGLDLHPTLDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 348
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH--LSAVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 349
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH--LSAVYGLDLHPTIDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 348
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Bos taurus (taxid: 9913) |
| >sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A + NE ++GS D ++++WDL +G L T + HV VR +
Sbjct: 137 GHLGWVRCVAIDPVD--------NEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDV 188
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+S HP+ SV ED +V LE ++ R + GH + V IA
Sbjct: 189 AVSD---RHPY---LFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATA 242
Query: 688 CRDHSRTSDAVDVLFIWDVKT 708
RD V+ +WD++T
Sbjct: 243 GRD--------SVIKLWDMRT 255
|
Involved in pre-mRNA splicing. May also be required for cell cycle progression at G2/M. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C V G N+ +G+ D +I+IWDL SG L + H+A VR +
Sbjct: 161 GHLGWVRC------VDVEPG---NQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGL 211
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+SP HP+ S GED V LET +V R + GH + + +
Sbjct: 212 AVSP---RHPY---LFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720
RD V +WD++T VL G S
Sbjct: 266 GRD--------AVARVWDMRTRQNVHVLSGHKS 290
|
Required for both cell cycle progression at G2/M and pre-mRNA splicing. Interacts genetically with the PRP4 kinase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp46 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V LA NE SG+ D +I+IW+L +G L + H++ VR +
Sbjct: 141 GHLGWVRSLAVE---------PNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGL 191
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+SP HP+ S GED V LET +V R + GH + + +
Sbjct: 192 AVSP---RHPY---LFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTG 245
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740
RD V +WD++T + VL G ++ D C+ I+GS+
Sbjct: 246 GRD--------GVARVWDMRTRSNIHVLSGHTG-TVADVQCQEADPQVITGSL 289
|
Involved in pre-mRNA splicing and required for cell cycle progression at G2/M. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1471 | ||||||
| 225426140 | 1516 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.944 | 0.655 | 0.0 | |
| 297742246 | 1521 | unnamed protein product [Vitis vinifera] | 0.963 | 0.932 | 0.656 | 0.0 | |
| 255537597 | 1525 | hypothetical protein RCOM_1689130 [Ricin | 0.976 | 0.942 | 0.653 | 0.0 | |
| 224053847 | 1500 | predicted protein [Populus trichocarpa] | 0.969 | 0.950 | 0.652 | 0.0 | |
| 356511466 | 1464 | PREDICTED: uncharacterized protein LOC10 | 0.938 | 0.942 | 0.586 | 0.0 | |
| 356527654 | 1452 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.947 | 0.587 | 0.0 | |
| 449457668 | 1510 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.978 | 0.952 | 0.570 | 0.0 | |
| 297809371 | 1468 | transducin family protein [Arabidopsis l | 0.948 | 0.950 | 0.577 | 0.0 | |
| 15237124 | 1446 | transducin/WD40 domain-containing protei | 0.919 | 0.934 | 0.562 | 0.0 | |
| 224075018 | 1360 | predicted protein [Populus trichocarpa] | 0.808 | 0.874 | 0.631 | 0.0 |
| >gi|225426140|ref|XP_002272901.1| PREDICTED: uncharacterized protein LOC100260315 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1910 bits (4948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/1473 (65%), Positives = 1133/1473 (76%), Gaps = 41/1473 (2%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYS---EIKPVA 57
MKCRSVACIWSG PP HR+TA + LT+PP+LYTGGSDGSI+WW+ S + EIKP+A
Sbjct: 1 MKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPVIEIKPIA 60
Query: 58 MLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS-SLDNGALISACTDGVLCV 116
MLCGH+AP+ADL IC+P + +NSSNV KS D+GALISACTDGVLC
Sbjct: 61 MLCGHAAPLADLGICFPIV------------DNSSNVKVKSIPADHGALISACTDGVLCT 108
Query: 117 WSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176
WSR SGHCRRRRK+PPWVGSPS+I LP+NPRYVCI C F+D L D HS + VEG
Sbjct: 109 WSRGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEA 168
Query: 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV 236
S D+E + PPKCT+VIVD+Y LTIVQTVFHGNLSIGP KFM V+ E+ LMV
Sbjct: 169 SLDRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMV 228
Query: 237 DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALV 296
D G+LQ VPI K+ L E G GL KSSS LD I ++G+ EGG +VS+AT G LV
Sbjct: 229 DPYGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLV 288
Query: 297 LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTT 356
+ CIFRLL SG+ IG+I FVDN C E GST+ +++G MFLE A + + C
Sbjct: 289 YRTCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDI 348
Query: 357 FYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416
ENF VW++RGSAIVY++SY++ F+++P EIPAVS+P + SI FIQ++ YL R+E
Sbjct: 349 TEENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIE 408
Query: 417 TVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDENEG- 472
+VCFH+EE W+P +++WSL Q+H K QC+MVG G F D V ++EG
Sbjct: 409 SVCFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGH 468
Query: 473 ------SCTGK-SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP 525
TG+ ++LT + T+P E +++ D + FV KE++VSSSMVISE+F+ P
Sbjct: 469 GHDVGIEPTGRETELTSQKSTIPSLEKMNNICRDDEKYSFVRKEQVVSSSMVISENFHTP 528
Query: 526 YAIVYGFFSGEIEVIQFD-LFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMV 582
YA+VYGF+SGEIEV +FD F+ S G S ++V+SH S+QYFLGHTGAVLCLAAHRMV
Sbjct: 529 YAVVYGFYSGEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMV 588
Query: 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642
G + GW+FN VLVSGSMDC+IR+WDL + NLITVMH HVA VRQIIL PP+T+ PWSDCF
Sbjct: 589 GNSNGWNFNHVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCF 648
Query: 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702
LSVGEDF VAL SLETLRVERMFPGHP+YPAKVVWD RGYIACLCR++S TSDAVDVLF
Sbjct: 649 LSVGEDFCVALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLF 708
Query: 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762
IWD+KTG RERVLRGTASHSMFD+F KGI+MNSISGSVLNG+TS SSLLLPI ED + Q
Sbjct: 709 IWDMKTGVRERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQ 768
Query: 763 SQIQNDERGVAFST-----ISEPSAS--HVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYP 815
S ++ +G+A S ISEPS S HV +G+S K + Q K +KCSCP+P
Sbjct: 769 SHFKHSVKGIALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFP 828
Query: 816 GIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMST 875
GIATLSFDLASLM HE GDKQ+N E GTET P+ MTA DGS+ +
Sbjct: 829 GIATLSFDLASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLN 888
Query: 876 DTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKG 935
+TIE H WI SLE +L+FSLSFLHLW+VD ELDKLLIT+MKL+RP+ FIV+ G QG++G
Sbjct: 889 NTIEGHDWISSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRG 948
Query: 936 SLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFA 995
SLTLTFPGL A LEL KSSSEFCAMRSLTMVSLAQR++SL H SSA SALAAFYTR+FA
Sbjct: 949 SLTLTFPGLGASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFA 1008
Query: 996 ENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSL 1055
E PDIKPP LQLLVSFWQDESEHVRMAARSLFHCAA+RAIP PLCS K + K + S
Sbjct: 1009 EKIPDIKPPSLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMIST 1068
Query: 1056 STTGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTS 1115
++ +E +SN+E + L SD PET G+S VEE +L+WLESFE QDWISCVGGTS
Sbjct: 1069 NSKRANEDGSSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTS 1128
Query: 1116 QDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMEST 1175
QDAMTSHIIVAAALAIWYPSLVK LAML V PL+KLVMA NEKYSSTAAELLAEGMEST
Sbjct: 1129 QDAMTSHIIVAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMEST 1188
Query: 1176 WKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILG 1235
WK CIG EIPRL+GDIFFQIECVS +S N A Q+PA+P +IRETLVG+LLPSLAMADI G
Sbjct: 1189 WKECIGSEIPRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPG 1248
Query: 1236 FLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMR 1295
FL+V+ESQIWSTASDSPVHLVS+MT+IRVVRGSPRN+ Q LDKVVNFILQTMDPGNSVMR
Sbjct: 1249 FLSVIESQIWSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMR 1308
Query: 1296 KTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDA 1355
+TCL +SM ALKE+V VFPMV+ ND+ST+LAVGDAIG+I ASIR+YD+QSVTKIKVLDA
Sbjct: 1309 RTCLQSSMTALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDA 1368
Query: 1356 SGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRS 1411
S PPGLP S++ TT ISAL FSPDGEGLVAFSEHGLMIRWWSLGS WWEKL R+
Sbjct: 1369 SAPPGLPSLLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRN 1428
Query: 1412 LVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG 1444
VPVQ TKLIFVPPWEG SPN++RSS+MA+I+G
Sbjct: 1429 FVPVQYTKLIFVPPWEGMSPNSSRSSVMASILG 1461
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742246|emb|CBI34395.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1904 bits (4932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1464 (65%), Positives = 1123/1464 (76%), Gaps = 46/1464 (3%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKCRSVACIWSG PP HR+TA + LT+PP+LYTGGSDGSI+WW+ S + S EIKP+AML
Sbjct: 29 MKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPEIKPIAML 88
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS-SLDNGALISACTDGVLCVWS 118
CGH+AP+ADL IC+P + +NSSNV KS D+GALISACTDGVLC WS
Sbjct: 89 CGHAAPLADLGICFPIV------------DNSSNVKVKSIPADHGALISACTDGVLCTWS 136
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178
R SGHCRRRRK+PPWVGSPS+I LP+NPRYVCI C F+D L D HS + VEG S
Sbjct: 137 RGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEASL 196
Query: 179 DKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDS 238
D+E + PPKCT+VIVD+Y LTIVQTVFHGNLSIGP KFM V+ E+ LMVD
Sbjct: 197 DRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMVDP 256
Query: 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK 298
G+LQ VPI K+ L E G GL KSSS LD I ++G+ EGG +VS+AT G LV +
Sbjct: 257 YGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLVYR 316
Query: 299 DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFY 358
CIFRLL SG+ IG+I FVDN C E GST+ +++G MFLE A + + C
Sbjct: 317 TCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDITE 376
Query: 359 ENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418
ENF VW++RGSAIVY++SY++ F+++P EIPAVS+P + SI FIQ++ YL R+E+V
Sbjct: 377 ENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIESV 436
Query: 419 CFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDENEGSCT 475
CFH+EE W+P +++WSL Q+H K QC+MVG G F D V ++EG
Sbjct: 437 CFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGHGH 496
Query: 476 GKSDLT-FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS 534
+ C+D D + FV KE++VSSSMVISE+F+ PYA+VYGF+S
Sbjct: 497 DVEKMNNICRD--------------DEKYSFVRKEQVVSSSMVISENFHTPYAVVYGFYS 542
Query: 535 GEIEVIQFD-LFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591
GEIEV +FD F+ S G S ++V+SH S+QYFLGHTGAVLCLAAHRMVG + GW+FN
Sbjct: 543 GEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMVGNSNGWNFN 602
Query: 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651
VLVSGSMDC+IR+WDL + NLITVMH HVA VRQIIL PP+T+ PWSDCFLSVGEDF V
Sbjct: 603 HVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCFLSVGEDFCV 662
Query: 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711
AL SLETLRVERMFPGHP+YPAKVVWD RGYIACLCR++S TSDAVDVLFIWD+KTG R
Sbjct: 663 ALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLFIWDMKTGVR 722
Query: 712 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771
ERVLRGTASHSMFD+F KGI+MNSISGSVLNG+TS SSLLLPI ED + QS ++ +G
Sbjct: 723 ERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQSHFKHSVKG 782
Query: 772 VAFST-----ISEPSAS--HVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDL 824
+A S ISEPS S HV +G+S K + Q K +KCSCP+PGIATLSFDL
Sbjct: 783 IALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFPGIATLSFDL 842
Query: 825 ASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWI 884
ASLM HE GDKQ+N E GTET P+ MTA DGS+ + +TIE H WI
Sbjct: 843 ASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLNNTIEGHDWI 902
Query: 885 KSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGL 944
SLE +L+FSLSFLHLW+VD ELDKLLIT+MKL+RP+ FIV+ G QG++GSLTLTFPGL
Sbjct: 903 SSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRGSLTLTFPGL 962
Query: 945 KAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPP 1004
A LEL KSSSEFCAMRSLTMVSLAQR++SL H SSA SALAAFYTR+FAE PDIKPP
Sbjct: 963 GASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFAEKIPDIKPP 1022
Query: 1005 LLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHA 1064
LQLLVSFWQDESEHVRMAARSLFHCAA+RAIP PLCS K + K + S ++ +E
Sbjct: 1023 SLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMISTNSKRANEDG 1082
Query: 1065 NSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHII 1124
+SN+E + L SD PET G+S VEE +L+WLESFE QDWISCVGGTSQDAMTSHII
Sbjct: 1083 SSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTSQDAMTSHII 1142
Query: 1125 VAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEI 1184
VAAALAIWYPSLVK LAML V PL+KLVMA NEKYSSTAAELLAEGMESTWK CIG EI
Sbjct: 1143 VAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMESTWKECIGSEI 1202
Query: 1185 PRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQI 1244
PRL+GDIFFQIECVS +S N A Q+PA+P +IRETLVG+LLPSLAMADI GFL+V+ESQI
Sbjct: 1203 PRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPGFLSVIESQI 1262
Query: 1245 WSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMA 1304
WSTASDSPVHLVS+MT+IRVVRGSPRN+ Q LDKVVNFILQTMDPGNSVMR+TCL +SM
Sbjct: 1263 WSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMRRTCLQSSMT 1322
Query: 1305 ALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR- 1363
ALKE+V VFPMV+ ND+ST+LAVGDAIG+I ASIR+YD+QSVTKIKVLDAS PPGLP
Sbjct: 1323 ALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDASAPPGLPSL 1382
Query: 1364 ---ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKL 1420
S++ TT ISAL FSPDGEGLVAFSEHGLMIRWWSLGS WWEKL R+ VPVQ TKL
Sbjct: 1383 LSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYTKL 1442
Query: 1421 IFVPPWEGFSPNTARSSIMANIMG 1444
IFVPPWEG SPN++RSS+MA+I+G
Sbjct: 1443 IFVPPWEGMSPNSSRSSVMASILG 1466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537597|ref|XP_002509865.1| hypothetical protein RCOM_1689130 [Ricinus communis] gi|223549764|gb|EEF51252.1| hypothetical protein RCOM_1689130 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1858 bits (4812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1490 (65%), Positives = 1132/1490 (75%), Gaps = 53/1490 (3%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKC SVACIW TPPSH+VTAT++L PPTLYTGGSDGSI W+ S S S SEIKPVAML
Sbjct: 1 MKCGSVACIWPDTPPSHKVTATASLNHPPTLYTGGSDGSIFQWNISFSGSNSEIKPVAML 60
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDN-GALISACTDGVLCVWS 118
CGH+APIADLSICYP +VS D ++++S N S DN GAL+SAC DGVLCVWS
Sbjct: 61 CGHAAPIADLSICYPVVVSGDDN----ESDHSINGSSTSISDNQGALLSACLDGVLCVWS 116
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTN-QLSDHHSFESVEGDLVS 177
R SGHCRRRRKLPPWVGSPS++ TLP + RYVC+GCC T L++ HS +S+EG VS
Sbjct: 117 RGSGHCRRRRKLPPWVGSPSILHTLPMSSRYVCVGCCLSQTTTHLTELHSIDSLEGCEVS 176
Query: 178 EDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVD 237
DKE + P KCT+VIVDTY LTIVQTVFHGNLSIGP KFMDVV GED K+ L+ D
Sbjct: 177 IDKESQHRKPSKCTVVIVDTYSLTIVQTVFHGNLSIGPLKFMDVVLSGEDGEKYSVLLAD 236
Query: 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVL 297
S G LQLVPI K+S LD E+G+ L KSS + I NG +GG +VS++T GN+IAL+L
Sbjct: 237 SYGGLQLVPILKDSDLDGEDGSDLYKSS---QLGICGNGSSKGGQVVSISTHGNLIALML 293
Query: 298 KDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF 357
K+ CIF LL S +TIGEI F+ L +EG ST S V+G FLE AEKI NT F
Sbjct: 294 KNRCIFGLLSSDTTIGEISFMGTLLSVEGNSTQSSVVGGFFLEIGDAEKIHNTEEAYEHF 353
Query: 358 YENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMET 417
E F VW + G A+VY ISY+N+ F EP +EIP S+P VK S+ FIQ YL+R+E+
Sbjct: 354 RECFVVWGSAGCAVVYIISYLNDVFKCEPLYEIPVGSHPPNVKLSVSFIQSISYLVRIES 413
Query: 418 VCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNSTFLDENEGSCT 475
VCF EE P++++WSL +KH GK +C++ F +W+++ L E G
Sbjct: 414 VCFDAEEPLLCNPHLTIWSLHEKHENNGKLSRCKVFAGNDLFAEWISSFGSLYEINGHGG 473
Query: 476 GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSG 535
K +F Q ++ E+ +S A RDDFV++ + V+SSM+ISE+ + PYA+VYGF SG
Sbjct: 474 RKKRTSFSQSSISCLENENSEHAIGERDDFVYEGQNVTSSMIISENLFLPYAVVYGFSSG 533
Query: 536 EIEVIQFDL---FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592
EIEV++FD+ E H S V SHVSRQY GHTGAVLCLAAH+M+G AKGW+F++
Sbjct: 534 EIEVVRFDMILGLESH-SRSPRPDVASHVSRQYITGHTGAVLCLAAHQMLGAAKGWTFSQ 592
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652
VLVSGSMDC+IRIWDL +GNLITVMH HVAPVRQII P +TE PWSDCFLSVGED V+
Sbjct: 593 VLVSGSMDCTIRIWDLDTGNLITVMHQHVAPVRQIIFPPARTERPWSDCFLSVGEDLCVS 652
Query: 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712
L SLETLRVERMFPGHP+YP KVVWD RGYIACLC+ HS TS+ DVL+IWD+KTGARE
Sbjct: 653 LVSLETLRVERMFPGHPSYPEKVVWDGTRGYIACLCQSHSGTSNIADVLYIWDIKTGARE 712
Query: 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772
RVLRGTASHSM DHFCKGIS NSISGS+LNGNTSVSSLLLPI EDG F QSQ + ER V
Sbjct: 713 RVLRGTASHSMLDHFCKGISANSISGSILNGNTSVSSLLLPIFEDGGFSQSQHNHLERKV 772
Query: 773 -------AFSTISEPSASHV--RKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFD 823
+ + +S P+ S RK NS NT LQ K IKC+CP+PGIATL+FD
Sbjct: 773 TSSNMLSSVTNMSVPTTSKAQGRKENSAS---NTPSLLQ-NKYPIKCTCPFPGIATLTFD 828
Query: 824 LASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHT- 882
LAS+MF Q HES A +KQEN E GT P + + SN +++ST+ ++E
Sbjct: 829 LASMMFSCQRHESIANGSNKQENNNVKEQGTNKLSPCHSPSDENSNQNAISTENLDERDG 888
Query: 883 WIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFP 942
W+KS+EE +LRFSLSFLHLWN+D ELDKLL+ +MKLKRPENFI+ASGLQG+KGSLTL FP
Sbjct: 889 WVKSVEELLLRFSLSFLHLWNIDSELDKLLMMDMKLKRPENFILASGLQGDKGSLTLAFP 948
Query: 943 GLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIK 1002
GL A LELWKSSSEFCAMRSL MVS+AQRMISL +SAAS ALAAFYTRN + PDIK
Sbjct: 949 GLSANLELWKSSSEFCAMRSLMMVSIAQRMISLSPSNSAASRALAAFYTRNITDQIPDIK 1008
Query: 1003 PPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE 1062
PPLLQLLVSFWQDESE+VRMAAR+LFHCAASRAIP PLCS + AK V SLS G++E
Sbjct: 1009 PPLLQLLVSFWQDESEYVRMAARTLFHCAASRAIPSPLCSQRASDHAKLVRSLSEVGENE 1068
Query: 1063 HANSNVEKISANELASDMLPETQGNSLVEE----------------SDVLSWLESFEVQD 1106
S V +ISAN L+SDM P++Q S EE S +L+WLESFEV D
Sbjct: 1069 GEASEVGEISANVLSSDMAPKSQEISKAEEPYYESPEKHQITEAEKSKILAWLESFEVPD 1128
Query: 1107 WISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAE 1166
WISCVGGTSQDAMTSHIIVAAAL IWYPSLVKP+LA+LVV PLIKLVMA N KYSSTAAE
Sbjct: 1129 WISCVGGTSQDAMTSHIIVAAALGIWYPSLVKPSLAVLVVHPLIKLVMAMNGKYSSTAAE 1188
Query: 1167 LLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLP 1226
LLAEGME TWK C+G EI RLI DIFFQIECVS+ SA AG PAVP+SIRETL+G+LLP
Sbjct: 1189 LLAEGMEDTWKACLGPEISRLIADIFFQIECVSSPSAISAGPDPAVPSSIRETLIGVLLP 1248
Query: 1227 SLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQT 1286
SLAMADILGFLTV+E QIWSTASDSPVHLVS+ T+IRVV GSPR +AQ+LDKVV+FIL T
Sbjct: 1249 SLAMADILGFLTVIERQIWSTASDSPVHLVSLTTLIRVVHGSPRCLAQYLDKVVSFILHT 1308
Query: 1287 MDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQS 1346
MDPGNSVMRKTCL +SM ALKE+V VFPMV+LNDTST+LAVGDA+G++ ASI VYDMQS
Sbjct: 1309 MDPGNSVMRKTCLQSSMTALKEVVRVFPMVALNDTSTRLAVGDAVGEVNDASISVYDMQS 1368
Query: 1347 VTKIKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGS 1402
+TKIKVLDASGPPGLP S++ TTVISAL FSPDG+GLVAFSEHGLMIRWWSLGS
Sbjct: 1369 ITKIKVLDASGPPGLPTLLSGASETAVTTVISALSFSPDGDGLVAFSEHGLMIRWWSLGS 1428
Query: 1403 VWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG---DSNLQ 1449
VWWEKLSR+LVPVQCTKLIFVPPWEGFSPN +RSS+M NIMG +NLQ
Sbjct: 1429 VWWEKLSRNLVPVQCTKLIFVPPWEGFSPNFSRSSVMINIMGHDRQTNLQ 1478
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053847|ref|XP_002298009.1| predicted protein [Populus trichocarpa] gi|222845267|gb|EEE82814.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1847 bits (4784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1469 (65%), Positives = 1110/1469 (75%), Gaps = 43/1469 (2%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKCRSVACIW TPPSH+VTA+++L PPTLYTGGSDGSIL W+ S S S +EIKPVAML
Sbjct: 1 MKCRSVACIWPDTPPSHKVTASASLNHPPTLYTGGSDGSILCWNLSSSDSNTEIKPVAML 60
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDN-GALISACTDGVLCVWS 118
CGH+APIADLSIC P +V+ E K + SSN G S+ D ALISAC GVLCVWS
Sbjct: 61 CGHAAPIADLSICCPMVVT----GEDTKTKCSSNGDGSSASDTYDALISACKFGVLCVWS 116
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178
R SGHCRRRRKLPPWVGSP + TLP++ RYVCIGCCFID SD HS +S+EG VS
Sbjct: 117 RGSGHCRRRRKLPPWVGSPCFVRTLPTSSRYVCIGCCFIDAAHSSDRHSIDSLEGGEVSV 176
Query: 179 DKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDS 238
DK PK T+VIVDTY LTIVQ+VFHGNLSIG FMDVV LGED KH + DS
Sbjct: 177 DKGCLPGKHPKSTVVIVDTYSLTIVQSVFHGNLSIGRLDFMDVVLLGEDGEKHSVFIADS 236
Query: 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK 298
G+++LVPI KES+ + G+GL + SSQL++ NG+ + G +VS AT GN+IALVLK
Sbjct: 237 SGKVELVPILKESNPVGDGGSGL-RKSSQLEVVNWGNGLSKEGQVVSSATRGNLIALVLK 295
Query: 299 DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFY 358
CIFRLL S +TIGE F +++ C+E S+V+G MFLE + E E F+
Sbjct: 296 TRCIFRLLTSETTIGETSFAEDILCVEDHFAQSHVLGGMFLE--IGEAGEMQSAQHDNFF 353
Query: 359 ENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418
+FAVW++RGSAIVY +SY+N F E +EIPA SYP+ V+ FIQ++ YLLR+E+V
Sbjct: 354 GHFAVWNSRGSAIVYIVSYLNNVFKSETLWEIPAASYPADVRLLFSFIQLNNYLLRIESV 413
Query: 419 CFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLD-ENEGSC 474
CF EE QW+P++++WSL +KH GK Q +M+GE F DWV+NS+ L N+G
Sbjct: 414 CFDDEEPLQWKPHVTIWSLCRKHDNHGKSSQQRKMLGESDFFADWVSNSSLLGINNQG-- 471
Query: 475 TGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS 534
GK +T Q +VP S +++ A D FV K VSSSMV+SE+ + PYA+VYGFF+
Sbjct: 472 VGKMRITSAQSSVPNSRTENNKHA-DESFGFVCNGKTVSSSMVVSENHFFPYAVVYGFFN 530
Query: 535 GEIEVIQFDLFERHNSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592
GEIEV++FD+ +S G S + V+S VSRQYF GHTGAVLCLAAHRM+G A+GWSF+
Sbjct: 531 GEIEVVRFDMLLEPDSHGESPRNDVDSPVSRQYFSGHTGAVLCLAAHRMLGAARGWSFSH 590
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652
VLVSGSMDC++RIWDL +GNLITVMH H+A VRQII +TE PW DCFLSVGED VA
Sbjct: 591 VLVSGSMDCTVRIWDLDTGNLITVMHQHIASVRQIIFPSARTERPWGDCFLSVGEDSCVA 650
Query: 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712
L SLETLRVERMFPGHP+Y KVVWD RGYIACLC+ H SD VD L+IWDVKTGARE
Sbjct: 651 LTSLETLRVERMFPGHPSYLEKVVWDGARGYIACLCQSHLGLSDTVDALYIWDVKTGARE 710
Query: 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772
RVL GTASHSMFDHFCK IS++SISGS+LNGNTSVSSLLLP+ ED TF QS + E+ V
Sbjct: 711 RVLHGTASHSMFDHFCKEISVHSISGSILNGNTSVSSLLLPVIEDETFSQSHSKLLEKKV 770
Query: 773 A-------FSTISEPSASH--VRKGN-SGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSF 822
+ +P+AS V+KG PS LQ K I C+CP+PGIA LSF
Sbjct: 771 SSPRMMSNMKNAMDPTASQGQVKKGILPTTPSF-----LQMNKHAIGCTCPFPGIAALSF 825
Query: 823 DLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHT 882
DLASLMFP+Q HE AA KQEN E GT T M GS+ + STDTIEEH
Sbjct: 826 DLASLMFPFQKHEPAANGVVKQENIDVKEQGTSTPRTQDMNFDGGSDKNGTSTDTIEEHD 885
Query: 883 WIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFP 942
WI+SLEE LRFSLSFLHLWN+D ELDKLL+TEMKL RPEN I+ASGLQG+KGSLTL+FP
Sbjct: 886 WIRSLEEYSLRFSLSFLHLWNLDSELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFP 945
Query: 943 GLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIK 1002
GL + LELWKSSSEFCAMRSLTMVS+AQRMISL SS +SALAAFYTR+FA+ PDIK
Sbjct: 946 GLSSILELWKSSSEFCAMRSLTMVSIAQRMISLSRCSSPVTSALAAFYTRSFADKIPDIK 1005
Query: 1003 PPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE 1062
PPLLQLLVSFWQDESEHVRMAAR+LFHCAASR+IPLPLC K A K V SLS D+E
Sbjct: 1006 PPLLQLLVSFWQDESEHVRMAARTLFHCAASRSIPLPLCGKKMNAHRKLVRSLSEIRDNE 1065
Query: 1063 HANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSH 1122
SN + L E QG + S +L WLESFE+QDWISCVGGTSQDAMTSH
Sbjct: 1066 AEVSNAVEFPDKSL------EKQGITEAARSKILDWLESFEMQDWISCVGGTSQDAMTSH 1119
Query: 1123 IIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGF 1182
+IVAAALA+WYPSLVKP++A LV PLIKLVM NE YSSTAAELLAEGMESTW+ CI
Sbjct: 1120 VIVAAALAVWYPSLVKPSIATLVAHPLIKLVMDMNETYSSTAAELLAEGMESTWEACISS 1179
Query: 1183 EIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVES 1242
EIPRLIGDIF+QIECVS SAN AG H +VP+ IRETLVGIL PSLAMADI GFLTV+E
Sbjct: 1180 EIPRLIGDIFYQIECVSGQSANSAGHHSSVPSFIRETLVGILFPSLAMADIPGFLTVIEG 1239
Query: 1243 QIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTS 1302
QIWSTASDSPVHLVS+ T+IRVVRGSPR++AQ+LDKVV+FIL TMDPGNS+MRKTCL +S
Sbjct: 1240 QIWSTASDSPVHLVSLTTLIRVVRGSPRHLAQYLDKVVSFILHTMDPGNSIMRKTCLQSS 1299
Query: 1303 MAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLP 1362
M ALKE+V FPMV+LNDTST+LAVGDAIG I A+I VYDMQSVTKIKVLDA GPPGLP
Sbjct: 1300 MTALKEMVQAFPMVALNDTSTRLAVGDAIGMINNATISVYDMQSVTKIKVLDACGPPGLP 1359
Query: 1363 R----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCT 1418
S+ TVISAL F+PDGEGLVAFSEHGLMIRWWSLGSVWWEKLSR+L PVQCT
Sbjct: 1360 NLLSGASEMAVITVISALSFAPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNLAPVQCT 1419
Query: 1419 KLIFVPPWEGFSPNTARSSIMANIMGDSN 1447
KLIFVPPWEGFSPN++RSSIMA+I+G N
Sbjct: 1420 KLIFVPPWEGFSPNSSRSSIMASILGHDN 1448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511466|ref|XP_003524447.1| PREDICTED: uncharacterized protein LOC100816646 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1628 bits (4215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1471 (58%), Positives = 1046/1471 (71%), Gaps = 91/1471 (6%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPT--LYTGGSDGSILWWSFSDSSYS---EIKP 55
MKCRSVACIWSGTP HRVTA +ALT+PPT YT GSDGS++WW+ S+S+ + ++K
Sbjct: 1 MKCRSVACIWSGTPFPHRVTAVAALTEPPTPTFYTAGSDGSVIWWTLSNSTSTSPPQLKA 60
Query: 56 VAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLC 115
V +LCGH+API DL++C P + +G G S ALISAC DG LC
Sbjct: 61 VGVLCGHAAPITDLAVCSPVADAENG-------------YGPSGSKFSALISACCDGFLC 107
Query: 116 VWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175
VWS++SGHCR RRKLPPWVG+P +I TLPS PRYVCI C SFE+ EG +
Sbjct: 108 VWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIAC------------SFEASEGVI 155
Query: 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLM 235
D+E + PPKCT++IVD+Y L+I QTVFHG+LSIGP +FM +V LG+D ++ +
Sbjct: 156 ---DRETKPRKPPKCTILIVDSYSLSITQTVFHGSLSIGPIRFMALV-LGDDEKRNSVFV 211
Query: 236 VDSVGRLQLVPISKESHLDREEGNGLCKS---SSQLDMAILQNGVVEGGHLVSVATCGNI 292
DS GR Q V IS++ +G L S QL+ + G+ +VSV T GN+
Sbjct: 212 ADSAGRQQTVLISED------QGESLASSLGDKGQLESSFCYEGLSGVEQIVSVLTYGNV 265
Query: 293 IALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMG 352
+A +L+D C+FRLL S IGE+ F+D+L CL+ GS Y IG +FLE I N
Sbjct: 266 VAFILRDRCVFRLLNGDSVIGEVSFLDSLLCLDQGSAQMYAIGGIFLESDYVGNICNANE 325
Query: 353 VCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYL 412
+ FAVW+N G A++Y + Y N+ F E H +IP Y ++ S+ F+Q++ +L
Sbjct: 326 YGNSITVQFAVWNNVGYAVIYNVLYQNDVFKCELHSDIPGTHYQPDMRLSVFFLQVNQHL 385
Query: 413 LRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDE 469
+ +++VC + EE WRP ++WSL PG+ QCR + +G SF+DW +NS+ L
Sbjct: 386 VCVKSVCLNHEEPLLWRPLATIWSLHDFDDEPGRLYRQCRRISDGISFIDWFDNSSQLKG 445
Query: 470 NEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIV 529
+G T TF P S+ VD+ + + +K K+VSSSM+ISE+ + PYA+V
Sbjct: 446 LDGLETMP---TF--GVSPSSDDVDNTHVDSMSNYYAYKGKVVSSSMIISENLFTPYAVV 500
Query: 530 YGFFSGEIEVIQFDLFERHNSPGASLKVN--SHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587
YGF SGEIEV++FDLF+ + AS + S +Q F GHTGAVLCLAAH+ +G+AK
Sbjct: 501 YGFLSGEIEVVRFDLFQGISLDNASSNPDEKSTACKQCFSGHTGAVLCLAAHQKMGSAKS 560
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647
W+F VLVSGSMDC+IRIWDL +G+LI VMHHHVAPVRQIIL P T HPWSDCFLSVGE
Sbjct: 561 WNFKRVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILPPSLTVHPWSDCFLSVGE 620
Query: 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
D VAL SLETLRVERMFPGH NYP+KV+WD RGYI+CLC+ H TSDA D+L IWDVK
Sbjct: 621 DACVALVSLETLRVERMFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDILCIWDVK 680
Query: 708 TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767
TG+RERVLRGTA+HSMFDHFCK ISMNSISG++LNGNTSVSSLLLPI +D S + N
Sbjct: 681 TGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDARLSNSPL-N 739
Query: 768 DERGVAFSTISEP----------SASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGI 817
+ ST S P S ++ KGN KP+ ++ IGL K IKCS P+PGI
Sbjct: 740 RSDNLLTSTRSSPNIPNMTELNSSKTNAGKGNPVKPNSSSLIGLLSSKLPIKCSSPFPGI 799
Query: 818 ATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDT 877
+L FDLASLM Y +ES G K N + G + P+ + +T
Sbjct: 800 VSLCFDLASLMLSYPKNESMENGGGKPVNINMKQQGVQEQNPSY-----------HNPET 848
Query: 878 IEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSL 937
+E H + EE +LR+SLSFLHLW+VDRELD LLI+EMKL+RPENFIVASGLQG+KGSL
Sbjct: 849 VEGHDLVSLFEEYLLRYSLSFLHLWSVDRELDNLLISEMKLRRPENFIVASGLQGDKGSL 908
Query: 938 TLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAEN 997
TLTFP A LELWKSSSEFCAMRSLTMVSLAQR+ISL H SAASSALAAFYTRNF EN
Sbjct: 909 TLTFPAQSATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLEN 968
Query: 998 FPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLST 1057
FPD+KPP LQLLV+FWQDESEHVRMAARS+FHCAAS IPLPLC+ K ++ + S +
Sbjct: 969 FPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHCIPLPLCNSKP-TESNNMSSQTG 1027
Query: 1058 TGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQD 1117
+ D N E IS E E QG S EES +L+WLESFEVQDW SCVGGTSQD
Sbjct: 1028 SRDKHLGNMTEESISPKE-------EKQGISQDEESKILAWLESFEVQDWNSCVGGTSQD 1080
Query: 1118 AMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWK 1177
AMTSHIIVA ALAIWYPSLVKP+LAMLVV PL+KL MA NEKYSSTAAELLAEGMESTWK
Sbjct: 1081 AMTSHIIVAGALAIWYPSLVKPSLAMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWK 1140
Query: 1178 TCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFL 1237
CI EIPRLIGDIFFQ+E S +L + SI++TLV +LLPSLAMADI GFL
Sbjct: 1141 ECIVSEIPRLIGDIFFQVEL---SGPSLVKEISDASFSIKKTLVEVLLPSLAMADIPGFL 1197
Query: 1238 TVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKT 1297
TV+ESQIWSTASDSPVH+VS++T+IR++RGSP+N+AQ+LDKVVNFILQT+DP NSVMRKT
Sbjct: 1198 TVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNLAQYLDKVVNFILQTIDPSNSVMRKT 1257
Query: 1298 CLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASG 1357
C +SM LKE+V V+PMV++ D+ TKLAVGD IG+I A IRVYDMQSVT +KVLDASG
Sbjct: 1258 CFQSSMTTLKEVVRVYPMVAVTDSWTKLAVGDVIGEINNAGIRVYDMQSVTMVKVLDASG 1317
Query: 1358 PPGLPR-----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSL 1412
PPGLP S ++ TT ISAL FSPDGEGLVAFSE+GL+IRWWSLGS WWEKLSR+
Sbjct: 1318 PPGLPTLLPAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNF 1377
Query: 1413 VPVQCTKLIFVPPWEGFSPNTARSSIMANIM 1443
VPVQCTKLIFVPPWEGFSPN++RSSIMANI+
Sbjct: 1378 VPVQCTKLIFVPPWEGFSPNSSRSSIMANIL 1408
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527654|ref|XP_003532423.1| PREDICTED: uncharacterized protein LOC100818675 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1604 bits (4153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1463 (58%), Positives = 1031/1463 (70%), Gaps = 87/1463 (5%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPT--LYTGGSDGSILWWSFS-----DSSYSEI 53
MKCRSVACIWS TP HRVTA +AL +PPT YT GS+GS++WW+ S +S ++
Sbjct: 1 MKCRSVACIWSDTPFPHRVTAVAALPEPPTPTFYTAGSNGSVIWWTLSTSPRANSILQQL 60
Query: 54 KPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGV 113
+ V +LCGH+API DL++C P AEH + G+S ALISAC DG
Sbjct: 61 RAVGVLCGHAAPITDLAVCSPV-----ADAEHVYGPS-----GRSKF--SALISACCDGF 108
Query: 114 LCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173
LCVWS++SGHCR RRKLPPWVG+P +I TLPS PRYVCI C SFE EG
Sbjct: 109 LCVWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIAC------------SFEGNEG 156
Query: 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYG 233
+ D+E + PPKCT++IVD+Y L+I QTVFHG+LSIGP FM +V LG+D ++
Sbjct: 157 VI---DRETQPRKPPKCTILIVDSYSLSITQTVFHGSLSIGPISFMALV-LGDDEKRNSV 212
Query: 234 LMVDSVGRLQLVPISKESHLDREEGNGLCKS---SSQLDMAILQNGVVEGGHLVSVATCG 290
+ DS GR Q V IS++ G L S Q + + G+ +VSV T G
Sbjct: 213 FVADSAGRQQTVLISED------RGESLVSSLGDKGQSESSFCYEGLSGVEQIVSVLTYG 266
Query: 291 NIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENT 350
N +A +LKD C+FRLL S IGE+ FVD+LF L+ GST Y IG +FLE + N
Sbjct: 267 NAVAFILKDRCVFRLLNGDSVIGEVSFVDSLFGLDRGSTQMYAIGGIFLESDDVGNMCNA 326
Query: 351 MGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL 410
+ F VW+N G A++Y + Y N+ F EPH EIP Y ++ S+ F+Q++
Sbjct: 327 NEYGNSITVQFVVWNNVGHAVIYNVLYQNDVFKCEPHSEIPGTHYQPDMRLSVFFLQVNQ 386
Query: 411 YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFL 467
+L+ +++VC + EE WRP ++WS PG+ QCRM+ +G SF++W ST L
Sbjct: 387 HLVCVKSVCLNHEEPLLWRPLATIWSTHDCDDEPGRLYRQCRMISDGVSFINWFEKSTQL 446
Query: 468 DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA 527
+G T TF P S+ VD+ + + +K K+VSSSM+ISE+ + PYA
Sbjct: 447 QGLDGLETTP---TF--GVSPSSDDVDNTHVDSMSNYYAYKGKVVSSSMIISENLFTPYA 501
Query: 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVN--SHVSRQYFLGHTGAVLCLAAHRMVGTA 585
+VYGF SGEIEV++FDLF AS + S +Q F GHTGAVLCLAAH+M+G A
Sbjct: 502 VVYGFLSGEIEVVRFDLFHGICLDDASSNPDEKSTACKQCFSGHTGAVLCLAAHQMMGRA 561
Query: 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645
K W+F +VLVSGSMDC+IRIWDL +G+LI VMHHHVAPVRQIIL P T +PWSDCFLSV
Sbjct: 562 KSWNFKQVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILPPSLTVYPWSDCFLSV 621
Query: 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
GED VAL SLETLRVERMFPGH NYP+KV+WD RGYI+CLC+ H TSDA D+L+IWD
Sbjct: 622 GEDACVALVSLETLRVERMFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDLLYIWD 681
Query: 706 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765
VKTG+RERVLRGTA+HSMFDHFCK ISMNSISG++LNGNTSVSSLLLPI +D F S +
Sbjct: 682 VKTGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDAKFSNSPL 741
Query: 766 QNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLA 825
N + S+ S P NS + ++ IGL K IKCS P+PGI +L FDLA
Sbjct: 742 -NRSDNLLTSSRSSPR-------NSVMQNSSSLIGLLSSKLPIKCSSPFPGIVSLCFDLA 793
Query: 826 SLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIK 885
SLM Y +ES G K N + G + P+ +T+E H +
Sbjct: 794 SLMLSYPKNESMENGGGKPVNINMKQQGVQEQNPSYHNP-----------ETVEGHDLVS 842
Query: 886 SLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLK 945
EE +LRFSLSFLHLW+VDRELD LLI+EMKL+RPENFIVASGLQG+KGSLTLTFP
Sbjct: 843 LFEEYLLRFSLSFLHLWSVDRELDNLLISEMKLRRPENFIVASGLQGDKGSLTLTFPAQS 902
Query: 946 AGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPL 1005
A LELWKSSSEFCAMRSLTMVSLAQR+ISL H SAASSALAAFYTRNF ENFPD+KPP
Sbjct: 903 ATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLENFPDVKPPS 962
Query: 1006 LQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHAN 1065
LQLLV+FWQDESEHVRMAARS+FHCAAS AIPLPLC K D+ + S + + D N
Sbjct: 963 LQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCYSKP-TDSNNMGSQTGSRDKHLGN 1021
Query: 1066 SNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIV 1125
E IS E QG S EES +L+WLESFEVQDWISCVGGTSQDAMTSHIIV
Sbjct: 1022 MAEESISPKA-------ENQGISQDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIV 1074
Query: 1126 AAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIP 1185
A ALAIWYPSLVKP+L MLVV PL+KL MA NEKYSSTAAELLAEGMESTWK CI EIP
Sbjct: 1075 AGALAIWYPSLVKPSLGMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIP 1134
Query: 1186 RLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIW 1245
RLIGDIFFQ+E +S S+ L + SI++TLV +LLPSLAMADI GFLTV+ESQIW
Sbjct: 1135 RLIGDIFFQVE-LSGPSSKLVKEISDASFSIKKTLVEVLLPSLAMADIPGFLTVIESQIW 1193
Query: 1246 STASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAA 1305
STASDSPVH+VS++T+IR++RGSP+N AQ+LDKVVNFILQT+DP NSVMRK C +SM
Sbjct: 1194 STASDSPVHMVSLLTLIRIMRGSPKNSAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTT 1253
Query: 1306 LKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR-- 1363
LKE+V V+PMV++ D+ TKLAVGD IG+I A IRVYDMQSVT +KVLDASGPPGLP
Sbjct: 1254 LKEVVRVYPMVAVTDSWTKLAVGDVIGEINNARIRVYDMQSVTMVKVLDASGPPGLPTLL 1313
Query: 1364 ---ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKL 1420
S ++ TT ISAL FSPDGEGLVAFSE+GL+IRWWSLGS WWEKLSR+ VPVQCTKL
Sbjct: 1314 PAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNFVPVQCTKL 1373
Query: 1421 IFVPPWEGFSPNTARSSIMANIM 1443
IFVPPWEGFSPN++RSSIMANI+
Sbjct: 1374 IFVPPWEGFSPNSSRSSIMANIL 1396
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457668|ref|XP_004146570.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221785 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1597 bits (4135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1500 (57%), Positives = 1067/1500 (71%), Gaps = 61/1500 (4%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWW--SFSDSS--------- 49
MKC++VACIWSGTP SHRVTAT+ L+QPPTLYTGGSDGSI+WW S SDSS
Sbjct: 1 MKCQTVACIWSGTPLSHRVTATAVLSQPPTLYTGGSDGSIIWWKISISDSSTVTQLDNYF 60
Query: 50 --YSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALIS 107
EI+PVA+LCGH+A IADL ICYP ++S GK + +S+ + +S GAL+S
Sbjct: 61 SFRXEIEPVAVLCGHAATIADLGICYP-VISGTGKTD----ISSNAEVNSTSEICGALVS 115
Query: 108 ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHS 167
AC+DGVLC+WSR SGHCRRRRKLP WVGSPSV+ T+PS PRYVC+GC F D+ SD+HS
Sbjct: 116 ACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSVVRTIPSKPRYVCVGCYFTDSVHSSDNHS 175
Query: 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGED 227
+S E VS D+E K KC++VIVDTY LTIV+TV HGNLSIG ++M +VS
Sbjct: 176 VDSAERIDVSADREHQHKKHSKCSVVIVDTYTLTIVETVLHGNLSIGSLRYMAIVSPLTG 235
Query: 228 MGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVA 287
G + +VDS GRLQ++ +SKES D+E ++SSQ+++ + + + E G +VSVA
Sbjct: 236 EGNYSAAIVDSFGRLQMISLSKES--DQEVDQASLQNSSQVNIPVWTDVLSERGQVVSVA 293
Query: 288 TCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKI 347
N+IA +L DHC+F+LL SG +GE+ F D++F + ++ ++V GAMFL+ I
Sbjct: 294 IQHNVIAFLLPDHCVFKLLLSGLVVGELSFTDSIFGINEFTSEAHVSGAMFLDGRDELNI 353
Query: 348 ENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQ 407
N TF E FAVW++ G A++Y IS N+ F+Y+P +EIPA S V FSI F+Q
Sbjct: 354 RNNQECHETFVEIFAVWNSIGHAVIYTISITNKIFEYKPLYEIPASCNSSSVGFSISFVQ 413
Query: 408 MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNST 465
++ + +R+E++ +EE W I++W+L +K GK +CRMVGE S +W+ +ST
Sbjct: 414 LNQHFIRIESLSSQIEEPFHWTSNITIWALQEKQPTHGKLLKCRMVGESSSLTEWIQDST 473
Query: 466 FLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP 525
F E G S L + S+ V+ GD ++FV K +I+SSSMVIS+S P
Sbjct: 474 FHSEFVGKYVVGSGL----KSDSSSDSVNDLYFGDC-NNFVQKGQIISSSMVISDSLSTP 528
Query: 526 YAIVYGFFSGEIEVIQFDLFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583
YA+VYG+ SG++++++ DLF+ +S AS +VN HV + Y GHTG VLCLA HR+V
Sbjct: 529 YAVVYGYSSGDVQILKLDLFQGLSSHRASPHCEVN-HVPQLYLSGHTGPVLCLAVHRLVS 587
Query: 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643
+ L+SGSMDC+IRIW L SGNL+ VMHHHVAPVRQIIL P T+HPWSDCFL
Sbjct: 588 KNN----EQFLLSGSMDCTIRIWGLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFL 643
Query: 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703
SVGED VALASLETL+VERMFPGH NYP KVVWD RGYIAC+C +HS TSD VD+L+I
Sbjct: 644 SVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYI 703
Query: 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763
WD+KTGARER++ GTAS S+FD+FCKGI S SGS+LNGNTS SSLL EDG+ S
Sbjct: 704 WDIKTGARERIIPGTASQSVFDNFCKGIG-KSFSGSILNGNTSASSLLFTTIEDGSVSDS 762
Query: 764 QIQNDERGVAFSTI--------SEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYP 815
N + + S+ S R S K N+ + +Q IKCSCP+P
Sbjct: 763 LSSNGKSANTLKAMADLSNKVESQTSNGQARSRKSTKSFQNSLYNFESGRQPIKCSCPFP 822
Query: 816 GIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAM-TAADGSNGHSMS 874
GIAT+SFDL LM Q +S A + Q+ + + P+A D S H +S
Sbjct: 823 GIATMSFDLTPLMGFNQKFKSFANRTNLQDTAVLKDQQARMSSPSARDKKMDDSLVHEIS 882
Query: 875 TDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEK 934
T + EE WI EEC++RFSLSFLH+W VD +LD LL+T+MKLK+PE+FIVASGLQG+K
Sbjct: 883 TGSNEELNWISLYEECLIRFSLSFLHVWGVDSDLDNLLVTDMKLKKPESFIVASGLQGDK 942
Query: 935 GSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNF 994
GSLT++FPG++A LELWKSS+EFCAMRSL ++SLAQ MISLFH S+ASSALAAFY RNF
Sbjct: 943 GSLTVSFPGMRAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNF 1002
Query: 995 AENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWS 1054
+ PDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASR+IPL L K + S
Sbjct: 1003 VDKVPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRSIPLSLRGGKSIEHG----S 1058
Query: 1055 LSTTGDDEHANSNVEKISANE-----LASDMLPETQGNSLVEESDVLSWLESFEVQDWIS 1109
S GD ++ + +S NE ++SD P+++ S VEE ++ +WLES+E+ DWIS
Sbjct: 1059 SSEIGD---IDTELNGLSMNEKPDYGISSDCFPKSEEVSQVEEFNIRTWLESYEMHDWIS 1115
Query: 1110 CVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLA 1169
CVGGTSQDAMTSHIIVAAALAIWY SLVK +L MLVV L+KLV + NEKYSSTAAELLA
Sbjct: 1116 CVGGTSQDAMTSHIIVAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLA 1175
Query: 1170 EGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLA 1229
EGMESTWKTC+G EIP LI D+ Q+E +S S N Q+ ++ IRETLV +LLP+LA
Sbjct: 1176 EGMESTWKTCLGNEIPHLIEDVLLQLEYMSGLSQNQLVQNSSLSVGIRETLVEVLLPNLA 1235
Query: 1230 MADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDP 1289
MADI GFLTV+ESQIWSTASDSPVHLVS+ T+IRVVRGSPRN+A +LDK VNFILQ MDP
Sbjct: 1236 MADIPGFLTVIESQIWSTASDSPVHLVSLKTLIRVVRGSPRNLAPYLDKAVNFILQIMDP 1295
Query: 1290 GNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTK 1349
NSVMRK C H+SMAALKE+VHVFPMVSLND+ T+LAVGD IG+I A+IRVYD+QSVTK
Sbjct: 1296 SNSVMRKICYHSSMAALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSANIRVYDLQSVTK 1355
Query: 1350 IKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWW 1405
IKVLDA+GPPGLP S+ ISAL FSPDGEG+VAFSEHGLMIRWWS+GSVWW
Sbjct: 1356 IKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWW 1415
Query: 1406 EKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSNLQVISIVDTFITFYRHDV 1465
EKLSR+ VPVQCTK+IFVPPWEGFSPN++R SIMA+ + + Q + + D D+
Sbjct: 1416 EKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASAT-ERDTQAVDVQDNVRGLSHADI 1474
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809371|ref|XP_002872569.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318406|gb|EFH48828.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1583 bits (4100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1464 (57%), Positives = 1040/1464 (71%), Gaps = 69/1464 (4%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWS---------FSDSSYS 51
MKCRSVAC+WS PPSHRVTAT++LT PPTLYTGGSDGSI+WWS + S S
Sbjct: 1 MKCRSVACLWSRAPPSHRVTATASLTNPPTLYTGGSDGSIIWWSISSSSESNSVTRLSSS 60
Query: 52 EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTD 111
EIKP+AMLCGH+API DL++C P VS +G ++ S N ++ ALISAC+D
Sbjct: 61 EIKPIAMLCGHTAPIVDLAVCDPTTVSGNGVT----SDCSDNGNADPFVNCCALISACSD 116
Query: 112 GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171
GVLCVWSRSSGHCRRRRKLPPWVGSPS++CTLPS PRYVC+GC +IDT S ++V
Sbjct: 117 GVLCVWSRSSGHCRRRRKLPPWVGSPSILCTLPSEPRYVCVGCSYIDT------QSVDTV 170
Query: 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKH 231
+G D + + P +CT+V+VDTY LTIV TVFHGNLSIG FM VV L E +
Sbjct: 171 DGAETLADTDFQNRKPSRCTVVVVDTYTLTIVHTVFHGNLSIGYLNFMGVVQLEE---QE 227
Query: 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN 291
LM DS GRLQLVP+S+ S E+G + +SS + +N + EG VSV T G
Sbjct: 228 SLLMADSFGRLQLVPVSENS----EKGEDVSESSK--GSVVSRNWLNEGEIAVSVITRGK 281
Query: 292 IIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTM 351
++A K+ C+F LL IGEI FVD+ C E N + AM L + IE
Sbjct: 282 LVAFFSKNRCVFWLLNREEAIGEISFVDDSLCSENHPPNFHFKEAMILYSSTS-TIEGDK 340
Query: 352 GVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLY 411
E F +WD+ GSA+++ +SY++ F Y+ EI VK + F+Q+ Y
Sbjct: 341 D--DRISETFVLWDDSGSAVLFVMSYIDGDFTYKNLGEIVTSPDKRSVKSTFCFVQLRQY 398
Query: 412 LLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNSTFLDE 469
LLR+E+ C VE+ SQWRP+I+VWSL G K Q +++GEG F DW++ S LD
Sbjct: 399 LLRVESTCCDVEQPSQWRPHITVWSLCLGGIGSEKELQRKLLGEGSYFADWIS-SCCLDP 457
Query: 470 NEGSCTGKSDLTFCQDTVPRSEHVDSR-QAGDGRDDFV-HKEKIVSSSMVISESFYAPYA 527
GS + ++ ++ H+ S+ + +G FV + VSSSMVISE+ Y PYA
Sbjct: 458 T-GSISAETGIS----------HLGSQCRTENGLQSFVSDNRQCVSSSMVISENLYVPYA 506
Query: 528 IVYGFFSGEIEVIQFDLFERHNSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585
+V GFFSGEIE+ +FD +SP +S + +S VSRQ LGHTG+VLCLAAHRM G A
Sbjct: 507 VVCGFFSGEIEIAKFDFLHGLDSPASSPRSDTDSLVSRQRLLGHTGSVLCLAAHRMFGDA 566
Query: 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645
G S + VL+SGSMDC+IRIWDL SGN+I +MHHHVAPVRQIIL+P +TE PWS+CFLSV
Sbjct: 567 NGCSSSHVLISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILAPARTERPWSNCFLSV 626
Query: 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
G+D VAL+SLETLRVERMFPGHPNYP KVVWD RGYIACL R SR SD +DVL+IWD
Sbjct: 627 GDDSCVALSSLETLRVERMFPGHPNYPTKVVWDGTRGYIACLFRSLSRKSDPIDVLYIWD 686
Query: 706 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765
VKTGARERVL G ASHSMFDHFC GIS S SG+VLNGNTSVSSLL P+ E+ + +
Sbjct: 687 VKTGARERVLNGAASHSMFDHFCAGISEKSYSGTVLNGNTSVSSLLFPVDEER--KPFYL 744
Query: 766 QNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLA 825
+N ER + ST S+PSAS + + S+ + + IKC+CP+PGI+TL FDL+
Sbjct: 745 KNYERAASLST-SKPSASQEKARE--ESSIASSFLQSIRYPPIKCTCPFPGISTLIFDLS 801
Query: 826 SLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIK 885
SL Q HE + + +E ++ T+ D S + E K
Sbjct: 802 SLAVSCQTHEDS-------DMHKMLEEKSDKPTAQQKTSNDKSPVQKTLDNPAEVVHMDK 854
Query: 886 SLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLK 945
++ E ++RFSLSFLHLW +D ELD++L+ +KLKRPE+FIV SGLQG+KGSLTL FPGL
Sbjct: 855 AIGEYLIRFSLSFLHLWGIDSELDQMLVAHLKLKRPESFIVTSGLQGDKGSLTLAFPGLN 914
Query: 946 AGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPL 1005
A LELWKSSSEF A+RS+ MVSLAQ MISL H ++ SS LAAFYTRN AE +PD+KPPL
Sbjct: 915 ATLELWKSSSEFSALRSVMMVSLAQCMISLSHSTATYSSNLAAFYTRNLAEKYPDLKPPL 974
Query: 1006 LQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE-HA 1064
LQLLV+FWQD+SE VRMAARSLFH AS AIPLPLCS K V SLS +E
Sbjct: 975 LQLLVTFWQDKSEQVRMAARSLFHHTASLAIPLPLCSDHASEHTKLVRSLSGISLNEPKV 1034
Query: 1065 NSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHII 1124
S VE+ N + S+ + + Q S EES++LSWLESFE+QDWISCVGGTSQDAM +HII
Sbjct: 1035 LSTVEEHPTNSVDSEHIHQAQRLSQAEESELLSWLESFEMQDWISCVGGTSQDAMAAHII 1094
Query: 1125 VAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEI 1184
VAAAL++WYPSLVKP LAMLVV L+ LVMA +EKYSSTAAELL+EGME+TWKT IG +I
Sbjct: 1095 VAAALSVWYPSLVKPGLAMLVVHKLLNLVMAMSEKYSSTAAELLSEGMETTWKTWIGPDI 1154
Query: 1185 PRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQI 1244
PR++ DIFFQIECVS+S G H VP+SI+ETLV ILLPSLAMAD+LGFL+++ESQI
Sbjct: 1155 PRIVSDIFFQIECVSSS----VGAHQTVPSSIKETLVEILLPSLAMADVLGFLSIIESQI 1210
Query: 1245 WSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMA 1304
WSTASDSPVH+VS+ T+IR++R +PRN+ HL+K VNF+LQTMDP N+VMRKTCL TSMA
Sbjct: 1211 WSTASDSPVHVVSLRTLIRIIRAAPRNLVLHLEKAVNFVLQTMDPSNTVMRKTCLQTSMA 1270
Query: 1305 ALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLP-- 1362
L+E+V VFPMV LND+ T+LA+GDAI +I A IR+YDMQS+TKIKVLDASGPPGLP
Sbjct: 1271 TLREVVRVFPMVILNDSLTRLAIGDAITEINNACIRIYDMQSMTKIKVLDASGPPGLPNF 1330
Query: 1363 -RESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLI 1421
R S+S TT ISAL FSPDGEGLVAFSE+GLMIRWWSLGSVWWEK+SRSL PVQCTKLI
Sbjct: 1331 LRASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKISRSLTPVQCTKLI 1390
Query: 1422 FVPPWEGFSPNTARSSIMANIMGD 1445
F+ PW+GFS N++R+S++++I D
Sbjct: 1391 FIHPWDGFSSNSSRTSVISSITSD 1414
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237124|ref|NP_192866.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|5596473|emb|CAB51411.1| putative protein [Arabidopsis thaliana] gi|7267826|emb|CAB81228.1| putative protein [Arabidopsis thaliana] gi|332657591|gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1492 bits (3863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1453 (56%), Positives = 1006/1453 (69%), Gaps = 101/1453 (6%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS---------YS 51
MKCRSVAC+WS PPSHRVTAT++LT PPTLYTGGSDGSI+WWS S SS +
Sbjct: 1 MKCRSVACLWSRAPPSHRVTATASLTNPPTLYTGGSDGSIIWWSISSSSESNSVTRLPHH 60
Query: 52 EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTD 111
EIKP+AMLCGH++PI DL+IC P ++S +G S N ++ ALISACTD
Sbjct: 61 EIKPIAMLCGHTSPIVDLAICDPTILSSNGVVA------SDNGNADPFVNCCALISACTD 114
Query: 112 GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171
GVLCVWSRSSG CR+RRKLPPWVGSPS++ TLPS PRYVC+GC +ID V
Sbjct: 115 GVLCVWSRSSGQCRKRRKLPPWVGSPSILSTLPSEPRYVCVGCSYID------------V 162
Query: 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKH 231
+G D + +CT+V+VDTY LTIV TVFHGNLSIG FM VV L E +
Sbjct: 163 DGAETLADTDF---QKSRCTVVVVDTYTLTIVHTVFHGNLSIGCLNFMGVVQLDE---QE 216
Query: 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN 291
LM DS GRLQLV +S++S E G S +N + EG VSV T G+
Sbjct: 217 SLLMADSFGRLQLVSVSEKS----EPSKGSLVS---------RNWLSEGEIAVSVITRGD 263
Query: 292 IIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTM 351
++A K C+F LL IGEI FVD+ S+N AM L + IE
Sbjct: 264 LVAFFSKSRCVFWLLNREEAIGEISFVDD-----SHSSNFLFKEAMILYSSTS-TIEGDK 317
Query: 352 GVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPS---GVKFSIHFIQM 408
+ E F +WD GSA+++ +SY++ +F Y+ EI V+ P VK + F+Q+
Sbjct: 318 D--DSISETFVLWDGSGSAVLFTMSYIDGEFTYKNFGEI--VTAPDDKRSVKSTFCFVQL 373
Query: 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK----QCRMVGEGFSFVDWVNNS 464
LLR+E+ C VE+ SQWRP+I++WSL G GK Q +++GE F DW+++S
Sbjct: 374 RQNLLRVESSCCDVEQPSQWRPHITIWSLCL---GNGKEKELQRKVLGESSYFADWISSS 430
Query: 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYA 524
+ +GS + ++ + + S + +G + VSSSMVISE+ Y
Sbjct: 431 CL--DPKGSVSAETGTSQSGSQCSAKNDLQSFVSDNG--------QCVSSSMVISENMYV 480
Query: 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH--VSRQYFLGHTGAVLCLAAHRMV 582
PYA+VYGFFSGEIE+ +FD +SP +S + ++ V +Q LGHTG+VLCLAAHRM
Sbjct: 481 PYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDTDPLVYKQRLLGHTGSVLCLAAHRMF 540
Query: 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642
G A G + + VL+SGSMDC+IRIWDL SGN+I +MHHHVAPVRQIILSP T+ PWS CF
Sbjct: 541 GDANGCNSSHVLISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILSPAPTKRPWSKCF 600
Query: 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702
LSVG+D VAL+SLETLRVERMFPGHPNYP KVVWD RGYIACL R SR SD +DVL+
Sbjct: 601 LSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVWDGTRGYIACLFRSLSRKSDPIDVLY 660
Query: 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762
IWDVKTGARERVL G ASHSMFDHFC GIS S SG+VLNGNTSVSSLL P+ E+ +
Sbjct: 661 IWDVKTGARERVLHGAASHSMFDHFCAGISEKSHSGTVLNGNTSVSSLLFPVDEER--KP 718
Query: 763 SQIQNDERGVAFSTISEPSASH-VRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLS 821
++N ER + ST S+ R+ +S S I + +IKC+CP+PGI+TL
Sbjct: 719 FYLKNYERAASLSTSKPSSSQEKTREESSTASSFLQSI----RYPSIKCTCPFPGISTLI 774
Query: 822 FDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEH 881
FDL+SL Q HE + + +E ++ A T+ D S + E
Sbjct: 775 FDLSSLAVYCQTHEDS-------DMHKMLEEKSDKATAQQKTSKDKSPVQKTLDNHAEVV 827
Query: 882 TWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTF 941
K++ E ++RFSLSFLHLW +D ELD++L+ +KLKRPE+FIV SGLQG+KGSLTL F
Sbjct: 828 HMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAHLKLKRPESFIVTSGLQGDKGSLTLAF 887
Query: 942 PGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDI 1001
PGL A LELWKSSSEF A+RS+ MVSLAQ MISL H ++ SS LAAFYTRN AE +PD+
Sbjct: 888 PGLNATLELWKSSSEFTALRSVIMVSLAQCMISLSHSTATYSSNLAAFYTRNLAEKYPDL 947
Query: 1002 KPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDD 1061
KPPLLQLLV+FWQD SE VRMAARSLFH AS AIPLPLCS A+ V SLS +
Sbjct: 948 KPPLLQLLVTFWQDNSEQVRMAARSLFHHTASLAIPLPLCSDHASEHAELVRSLSGISLN 1007
Query: 1062 E-HANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMT 1120
E S E+ N L S+ + + Q S EES++LSWLESFE+QDWISCVGGTSQDAM
Sbjct: 1008 EPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEESEILSWLESFEMQDWISCVGGTSQDAMA 1067
Query: 1121 SHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCI 1180
+HIIVAAAL+IWYPSLVKP LAMLVV L+ LVMA +EKYSSTAAELL+EGME+TWKT I
Sbjct: 1068 AHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVMAMSEKYSSTAAELLSEGMETTWKTWI 1127
Query: 1181 GFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVV 1240
G +IPR++ DIFFQIECVS+S G + VP+SI+ETLV +LLPSLAMAD+LGFL+++
Sbjct: 1128 GPDIPRIVSDIFFQIECVSSS----VGAYQVVPSSIKETLVEVLLPSLAMADVLGFLSII 1183
Query: 1241 ESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLH 1300
ESQIWSTASDSPVH+VS+ T+IR++R +PRN+ HL+K VNF+LQTMDP N+VMRKTCL
Sbjct: 1184 ESQIWSTASDSPVHVVSLRTLIRIIRAAPRNLVLHLEKAVNFVLQTMDPSNTVMRKTCLQ 1243
Query: 1301 TSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPG 1360
TSMA L+E+V VFPMV LND+ST+LA+GD I +I A I +YDM+S+TKI+VLDASGPPG
Sbjct: 1244 TSMATLREVVRVFPMVILNDSSTRLAIGDVITEINNACIHIYDMRSMTKIRVLDASGPPG 1303
Query: 1361 LPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQ 1416
LP S+S TT ISAL FSPDGEGLVAFSE+GLMIRWWSLGSVWWEKLS+SL P+Q
Sbjct: 1304 LPNFLRGASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKLSQSLTPIQ 1363
Query: 1417 CTKLIFVPPWEGF 1429
CTKLIF+ PW+GF
Sbjct: 1364 CTKLIFIHPWDGF 1376
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075018|ref|XP_002304520.1| predicted protein [Populus trichocarpa] gi|222841952|gb|EEE79499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1476 bits (3822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1237 (63%), Positives = 919/1237 (74%), Gaps = 48/1237 (3%)
Query: 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301
++LVPI KES+ ++G+G SSQL++ N + EGG +VS+AT G++IALVLK C
Sbjct: 83 VELVPILKESNAGGDDGSGS-SKSSQLEVVNWGNKLSEGGQVVSIATRGDLIALVLKTRC 141
Query: 302 IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENF 361
IFR+L S ++IGEI F +++ C+E S S+V+G MFLE + + E F +F
Sbjct: 142 IFRILSSDASIGEISFAEDILCVEEHSNQSHVLGGMFLE--IGDTGEMQNAQYDNFLGHF 199
Query: 362 AVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFH 421
AVW+ RGSAIVY +SY+N F E EIP+ S P+ V+ FIQ+ YLLR+E+VC+
Sbjct: 200 AVWNRRGSAIVYIVSYLNNVFKSETLCEIPSSSCPADVRLLFSFIQLKNYLLRIESVCYD 259
Query: 422 VEETSQWRPYISVWSLSQK---HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478
EE +W+P++++WSL QK H +QC+M+GE +W+++S+ L E K
Sbjct: 260 DEEPLRWKPHVTIWSLCQKNNIHGKSSRQCKMLGESDFLAEWISSSS-LHEINSQGGRKM 318
Query: 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIE 538
+T Q + ++ +++ A D FVH VSSSMVISE+ + PYA+VYGFFSGEIE
Sbjct: 319 RITSLQSSFRKARTENNKHADDESFSFVHNGLAVSSSMVISENHFVPYAVVYGFFSGEIE 378
Query: 539 VIQFDLFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVS 596
V++FD+ + G S V VSRQ F GHTGAVLCLAAHRM+G AKGWSF+ VLVS
Sbjct: 379 VVRFDMLLGPDCHGESPSHDVEPPVSRQCFSGHTGAVLCLAAHRMMGAAKGWSFSHVLVS 438
Query: 597 GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656
GSMDC+IRIWDL +GNLITVM HVA VRQII TE PW DCFLSVGED VALASL
Sbjct: 439 GSMDCTIRIWDLDTGNLITVMRQHVASVRQIIFPSAWTERPWGDCFLSVGEDSCVALASL 498
Query: 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716
ETLRVERMFPGHP+YP KVVWD RGYIACLC HS SD D L+IWDVKTGARERVL
Sbjct: 499 ETLRVERMFPGHPSYPEKVVWDGARGYIACLCWSHSGLSDTSDTLYIWDVKTGARERVLC 558
Query: 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER------ 770
GTASHSM DHFCKGIS+NS+SGS+LNGNTSVSSLLLPI EDG F QS + E+
Sbjct: 559 GTASHSMLDHFCKGISVNSLSGSILNGNTSVSSLLLPILEDGNFSQSHSKLSEKVSSPRM 618
Query: 771 GVAFSTISEPSASH--VRKG-NSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASL 827
+ +P+ S V+KG PS LQ K I C+CP+PGIA LSFDLASL
Sbjct: 619 TSSMKITMDPTTSQGQVKKGIFPSTPSF-----LQMNKHAIGCTCPFPGIAALSFDLASL 673
Query: 828 MFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSL 887
MF Q HE AA G K + E GT + M DGS+ + STDT+EEH I+S
Sbjct: 674 MFSCQKHEPAANGGVKLK-----ERGTSNPRTHDMNFDDGSDKNRTSTDTVEEHECIRSQ 728
Query: 888 EECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAG 947
EE LRFSLSFLHLW++D ELDKLL+TEMKL RPEN I+ASGLQG+KGSLTL+FPGL +
Sbjct: 729 EEYFLRFSLSFLHLWDLDIELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFPGLSSI 788
Query: 948 LELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQ 1007
LELWKSSSEFCAMRSLTM+S+AQRMIS H SS ASSALAAFYTR+ A+ PDIKPPLLQ
Sbjct: 789 LELWKSSSEFCAMRSLTMLSIAQRMISFSHCSSPASSALAAFYTRSLADKIPDIKPPLLQ 848
Query: 1008 LLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANSN 1067
LLVSFWQDESEHVRMAAR+LFHCAASRAIP+PLC K A+ + V SLS G++E S
Sbjct: 849 LLVSFWQDESEHVRMAARTLFHCAASRAIPIPLCDKKANANRELVRSLSEIGENEGQVSK 908
Query: 1068 VEKISANELASDMLPETQGNSLVEES----------------DVLSWLESFEVQDWISCV 1111
V S N L+SDM PE Q SL ES +L WLES+E+QDWISCV
Sbjct: 909 VGGTSTNGLSSDMSPEPQATSLAAESPDKSLEKQGITEAERFKILDWLESYEMQDWISCV 968
Query: 1112 GGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEG 1171
GGTSQDAMTSHIIVAAALA+WYPSLVKP+LA LV PL+KLVMA NE YSSTAAELL+EG
Sbjct: 969 GGTSQDAMTSHIIVAAALAMWYPSLVKPSLATLVAHPLVKLVMAMNETYSSTAAELLSEG 1028
Query: 1172 MESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMA 1231
MESTWK CI EI RLIGD FFQIE VS SAN AG P VP+SI+ETLVGILLP+LAMA
Sbjct: 1029 MESTWKACINSEISRLIGDTFFQIEYVSGQSANTAGHRPPVPSSIQETLVGILLPNLAMA 1088
Query: 1232 DILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGN 1291
DI GFL V+ESQIWSTASDSPVHLVS+ T+IRV+RGSPR ++Q+LDKVV+FIL T+DPGN
Sbjct: 1089 DIPGFLNVIESQIWSTASDSPVHLVSLTTLIRVMRGSPRQLSQYLDKVVSFILHTIDPGN 1148
Query: 1292 SVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK 1351
S+MRKTCL +SM ALKE+V FPMV+LNDTST+LAVGDAIG+I A+I VYDMQSVTKIK
Sbjct: 1149 SIMRKTCLQSSMTALKEMVRAFPMVALNDTSTRLAVGDAIGEINNATISVYDMQSVTKIK 1208
Query: 1352 VLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEK 1407
VLDASGPPGLP S+ TTVISAL F+PDGEGLVAFSEHGLMIRWWSLGSVWWEK
Sbjct: 1209 VLDASGPPGLPNLLSGTSEMAVTTVISALSFAPDGEGLVAFSEHGLMIRWWSLGSVWWEK 1268
Query: 1408 LSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG 1444
LSR+L PVQCTK+IFVPPWEGFSPN++RSSI+ANI+G
Sbjct: 1269 LSRNLAPVQCTKVIFVPPWEGFSPNSSRSSIIANILG 1305
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1471 | ||||||
| TAIR|locus:2128288 | 1446 | AT4G11270 "AT4G11270" [Arabido | 0.779 | 0.792 | 0.561 | 0.0 | |
| DICTYBASE|DDB_G0272771 | 1342 | wdr7 "WD40 repeat-containing p | 0.091 | 0.100 | 0.294 | 9.3e-27 | |
| MGI|MGI:1860197 | 1489 | Wdr7 "WD repeat domain 7" [Mus | 0.110 | 0.109 | 0.252 | 9e-19 | |
| FB|FBgn0023510 | 1525 | Rbcn-3B "Rabconnectin-3B" [Dro | 0.132 | 0.127 | 0.267 | 1.6e-17 | |
| UNIPROTKB|Q2KID6 | 513 | PLRG1 "Pleiotropic regulator 1 | 0.099 | 0.286 | 0.335 | 1.7e-05 | |
| MGI|MGI:1858197 | 513 | Plrg1 "pleiotropic regulator 1 | 0.099 | 0.286 | 0.335 | 1.7e-05 | |
| UNIPROTKB|O43660 | 514 | PLRG1 "Pleiotropic regulator 1 | 0.099 | 0.285 | 0.335 | 1.7e-05 | |
| RGD|621047 | 514 | Plrg1 "pleiotropic regulator 1 | 0.099 | 0.285 | 0.335 | 1.7e-05 | |
| UNIPROTKB|E2QYT6 | 515 | PLRG1 "Uncharacterized protein | 0.099 | 0.285 | 0.335 | 1.7e-05 | |
| SGD|S000006072 | 451 | PRP46 "Member of the NineTeen | 0.157 | 0.514 | 0.261 | 3.7e-05 |
| TAIR|locus:2128288 AT4G11270 "AT4G11270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3200 (1131.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 671/1195 (56%), Positives = 839/1195 (70%)
Query: 263 KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLF 322
KS + +N + EG VSV T G+++A K C+F LL IGEI FVD
Sbjct: 235 KSEPSKGSLVSRNWLSEGEIAVSVITRGDLVAFFSKSRCVFWLLNREEAIGEISFVD--- 291
Query: 323 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKF 382
+ S+N AM L + IE + E F +WD GSA+++ +SY++ +F
Sbjct: 292 --DSHSSNFLFKEAMILYSSTST-IEGDKD--DSISETFVLWDGSGSAVLFTMSYIDGEF 346
Query: 383 DYEPHFEI-PAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKH 441
Y+ EI A VK + F+Q+ LLR+E+ C VE+ SQWRP+I++WSL +
Sbjct: 347 TYKNFGEIVTAPDDKRSVKSTFCFVQLRQNLLRVESSCCDVEQPSQWRPHITIWSLCLGN 406
Query: 442 SGPGK--QCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG 499
G K Q +++GE F DW+++S LD +GS + ++ + + S +
Sbjct: 407 -GKEKELQRKVLGESSYFADWISSSC-LDP-KGSVSAETGTSQSGSQCSAKNDLQSFVSD 463
Query: 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559
+G+ VSSSMVISE+ Y PYA+VYGFFSGEIE+ +FD +SP +S + ++
Sbjct: 464 NGQ--------CVSSSMVISENMYVPYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDT 515
Query: 560 H--VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM 617
V +Q LGHTG+VLCLAAHRM G A G + + VL+SGSMDC+IRIWDL SGN+I +M
Sbjct: 516 DPLVYKQRLLGHTGSVLCLAAHRMFGDANGCNSSHVLISGSMDCTIRIWDLESGNVIMIM 575
Query: 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677
HHHVAPVRQIILSP T+ PWS CFLSVG+D VAL+SLETLRVERMFPGHPNYP KVVW
Sbjct: 576 HHHVAPVRQIILSPAPTKRPWSKCFLSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVW 635
Query: 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSIS 737
D RGYIACL R SR SD +DVL+IWDVKTGARERVL G ASHSMFDHFC GIS S S
Sbjct: 636 DGTRGYIACLFRSLSRKSDPIDVLYIWDVKTGARERVLHGAASHSMFDHFCAGISEKSHS 695
Query: 738 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASH--VRKGNSGKPSL 795
G+VLNGNTSVSSLL P+ E+ + ++N ER + ST S+PS+S R+ +S S
Sbjct: 696 GTVLNGNTSVSSLLFPVDEER--KPFYLKNYERAASLST-SKPSSSQEKTREESSTASSF 752
Query: 796 NTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTE 855
I + +IKC+CP+PGI+TL FDL+SL Q HE + D + +E ++
Sbjct: 753 LQSI----RYPSIKCTCPFPGISTLIFDLSSLAVYCQTHEDS----DMHK---MLEEKSD 801
Query: 856 TAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITE 915
A T+ D S + E K++ E ++RFSLSFLHLW +D ELD++L+
Sbjct: 802 KATAQQKTSKDKSPVQKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAH 861
Query: 916 MKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISL 975
+KLKRPE+FIV SGLQG+KGSLTL FPGL A LELWKSSSEF A+RS+ MVSLAQ MISL
Sbjct: 862 LKLKRPESFIVTSGLQGDKGSLTLAFPGLNATLELWKSSSEFTALRSVIMVSLAQCMISL 921
Query: 976 FHPXXXXXXXXXXFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRA 1035
H FYTRN AE +PD+KPPLLQLLV+FWQD SE VRMAARSLFH AS A
Sbjct: 922 SHSTATYSSNLAAFYTRNLAEKYPDLKPPLLQLLVTFWQDNSEQVRMAARSLFHHTASLA 981
Query: 1036 IPLPLCSPKGVADAKPVWSLSTTGDDE-HANSNVEKISANELASDMLPETQGNSLVEESD 1094
IPLPLCS A+ V SLS +E S E+ N L S+ + + Q S EES+
Sbjct: 982 IPLPLCSDHASEHAELVRSLSGISLNEPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEESE 1041
Query: 1095 VLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVM 1154
+LSWLESFE+QDWISCVGGTSQDAM +HIIVAAAL+IWYPSLVKP LAMLVV L+ LVM
Sbjct: 1042 ILSWLESFEMQDWISCVGGTSQDAMAAHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVM 1101
Query: 1155 ATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPA 1214
A +EKYSSTAAELL+EGME+TWKT IG +IPR++ DIFFQIECVS+S G + VP+
Sbjct: 1102 AMSEKYSSTAAELLSEGMETTWKTWIGPDIPRIVSDIFFQIECVSSS----VGAYQVVPS 1157
Query: 1215 SIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQ 1274
SI+ETLV +LLPSLAMAD+LGFL+++ESQIWSTASDSPVH+VS+ T+IR++R +PRN+
Sbjct: 1158 SIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVSLRTLIRIIRAAPRNLVL 1217
Query: 1275 HLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDI 1334
HL+K VNF+LQTMDP N+VMRKTCL TSMA L+E+V VFPMV LND+ST+LA+GD I +I
Sbjct: 1218 HLEKAVNFVLQTMDPSNTVMRKTCLQTSMATLREVVRVFPMVILNDSSTRLAIGDVITEI 1277
Query: 1335 KKASIRVYDMQSVTKIKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSE 1390
A I +YDM+S+TKI+VLDASGPPGLP S+S TT ISAL FSPDGEGLVAFSE
Sbjct: 1278 NNACIHIYDMRSMTKIRVLDASGPPGLPNFLRGASESAVTTAISALSFSPDGEGLVAFSE 1337
Query: 1391 HGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGD 1445
+GLMIRWWSLGSVWWEKLS+SL P+QCTKLIF+ PW+GFS +++R+S++++I D
Sbjct: 1338 NGLMIRWWSLGSVWWEKLSQSLTPIQCTKLIFIHPWDGFSSSSSRTSVISSISND 1392
|
|
| DICTYBASE|DDB_G0272771 wdr7 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 9.3e-27, Sum P(6) = 9.3e-27
Identities = 43/146 (29%), Positives = 73/146 (50%)
Query: 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640
++ + G +L S S DC+I++WDL + L+ HH PV I S PQ+ +
Sbjct: 593 LMSSPPGTGLRRLLFSASNDCTIKVWDLSTFKLLHTFSHHTGPVYSIF-SLPQSSR--RN 649
Query: 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700
F+S+ ED ++ + S+E L + MF H + +KV W +GY+ D S
Sbjct: 650 TFISISEDKTIGMYSMEDLSCKHMFGVHSSSISKVHWKNEQGYLMVETIDGS-------- 701
Query: 701 LFIWDVKTGARERVLRGTASHSMFDH 726
+ IW++ +G E V+ G + + D+
Sbjct: 702 VSIWEMGSGELEGVVYGQIAKDILDN 727
|
|
| MGI|MGI:1860197 Wdr7 "WD repeat domain 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 9.0e-19, Sum P(6) = 9.0e-19
Identities = 45/178 (25%), Positives = 77/178 (43%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHL-FPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLN 742
C D S +++W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVN 627
|
|
| FB|FBgn0023510 Rbcn-3B "Rabconnectin-3B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 1.6e-17, Sum P(6) = 1.6e-17
Identities = 57/213 (26%), Positives = 93/213 (43%)
Query: 510 KIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQF-DLFERHNSPGASLKVNSHVSRQYF 566
+I S + ++ S Y P +V G G I ++ G + S Q
Sbjct: 398 RITESPVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQIL 457
Query: 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ 626
GH G V CL M+ + S L+SG +D ++ +WDL SG+L+ H + Q
Sbjct: 458 YGHRGRVNCLLCPSMIHSRYEKSH---LLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQ 514
Query: 627 IILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYI 684
+++ PP++ P C SV D SV L SL+ + + H +P + W ++
Sbjct: 515 LLV-PPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHL-FPVVTIKWRPLDDFL 572
Query: 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
C D S +++W ++TG +RVL G
Sbjct: 573 IVGCSDGS--------VYVWQMETGHLDRVLHG 597
|
|
| UNIPROTKB|Q2KID6 PLRG1 "Pleiotropic regulator 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 348
|
|
| MGI|MGI:1858197 Plrg1 "pleiotropic regulator 1, PRL1 homolog (Arabidopsis)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTLDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 348
|
|
| UNIPROTKB|O43660 PLRG1 "Pleiotropic regulator 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 349
|
|
| RGD|621047 Plrg1 "pleiotropic regulator 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 349
|
|
| UNIPROTKB|E2QYT6 PLRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 203 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 253
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 254 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 305
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 306 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 350
|
|
| SGD|S000006072 PRP46 "Member of the NineTeen Complex (NTC)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 70/268 (26%), Positives = 114/268 (42%)
Query: 451 VGEGFSFVDWVNNSTFL----DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRD--- 503
V + +S + W N +++ + G+ L DT R E S +G+G+
Sbjct: 14 VDKFYSRIRWNNQFSYMATLPPHLQSEMEGQKSLLMRYDTY-RKE--SSSFSGEGKKVTL 70
Query: 504 DFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEI-EVIQFDLFERHNSPGASLKVNSH 560
V + +S VIS+ + +A V F E+ E + + +E+ S
Sbjct: 71 QHVPTDFSEASQAVISKKDHDTHASAFVNKIFQPEVAEELIVNRYEKLLSQRPEWHAPWK 130
Query: 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH 620
+SR GH G V C+A + NE ++GS D ++++WDL +G L T + H
Sbjct: 131 LSR-VINGHLGWVRCVAIDPVD--------NEWFITGSNDTTMKVWDLATGKLKTTLAGH 181
Query: 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680
V VR + +S HP+ SV ED +V LE ++ R + GH + V
Sbjct: 182 VMTVRDVAVSD---RHPY---LFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPT 235
Query: 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT 708
IA RD V+ +WD++T
Sbjct: 236 LDLIATAGRD--------SVIKLWDMRT 255
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00002533001 | SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (1480 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1471 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| PRK04313 | 237 | PRK04313, PRK04313, 30S ribosomal protein S4e; Val | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| COG1471 | 241 | COG1471, RPS4A, Ribosomal protein S4E [Translation | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV 621
R+ GHTG V C+A ++L +GS D +I++WDL +G L+ + H
Sbjct: 1 LRRTLKGHTGGVTCVAFS---------PDGKLLATGSGDGTIKVWDLETGELLRTLKGHT 51
Query: 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR 681
PVR + S S D ++ L LET R GH +Y + V + P
Sbjct: 52 GPVRDVAAS------ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PD 104
Query: 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
G I + +WDV+TG LRG
Sbjct: 105 GRILSSSSRDKT-------IKVWDVETGKCLTTLRG 133
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GHT V +A + S S D +I++WDL +G + + H V
Sbjct: 131 LRGHTDWVNSVAFS---------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685
+ SP + LS D ++ L L T + GH N V + P GY+
Sbjct: 182 SVAFSPD------GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLL 234
Query: 686 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720
T + +WD++TG + L G +
Sbjct: 235 ASG-SEDGT------IRVWDLRTGECVQTLSGHTN 262
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GHTG V +AA + L SGS D +IR+WDL +G + + H + V +
Sbjct: 49 GHTGPVRDVAAS---------ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
P S D ++ + +ET + GH ++ V + ++A
Sbjct: 100 AF------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
+D + + +WD++TG L G
Sbjct: 154 SQDGT--------IKLWDLRTGKCVATLTG 175
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT 615
+ + + GHT V +A +L S S D +I++WD+ +G +T
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPD---------GRILSSSSRDKTIKVWDVETGKCLT 129
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERMFPGHPNYPAK 674
+ H V + SP T F++ +D ++ L L T + GH
Sbjct: 130 TLRGHTDWVNSVAFSPDGT-------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
V + P G +SD + +WD+ TG LRG
Sbjct: 183 VAFS-PDGEKLLSS-----SSD--GTIKLWDLSTGKCLGTLRG 217
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 7e-04
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
+ GH+ +V LA + S+D +I++WDL +G ++ + H P
Sbjct: 149 RTLEGHSESVTSLAFS--------PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRG 682
V + SP S D ++ L L T ++ R GH + P G
Sbjct: 201 VSSLAFSPDGGLL-----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF--SPDG 253
Query: 683 -YIACLCRDHSRTSDAVDVLFIWDVKTG 709
+A D + + +WD+++
Sbjct: 254 SLLASGSSDGT--------IRLWDLRSS 273
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH V +A +L SGS D +IR+WDL +G + + H V
Sbjct: 215 LRGHENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
Query: 626 QIILSP 631
+ SP
Sbjct: 266 SLAWSP 271
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (99), Expect = 0.001
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%)
Query: 591 NEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649
+L SGS D +IR+WDL S +L+ + H + V + S P S D
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS------PDGKLLASGSSDG 306
Query: 650 SVALASLETLRV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
+V L LET ++ GH + + + P G + T + +WD++
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGT------IRLWDLR 359
Query: 708 TGARERVLRG--TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751
TG + L G F + +S S G+V + S SLL
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
|
Length = 466 |
| >gnl|CDD|179820 PRK04313, PRK04313, 30S ribosomal protein S4e; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 218 FMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGV 277
MDV+S+ + G++Y ++ D GRL L+PIS+E E LCK I
Sbjct: 82 LMDVISI-PETGEYYRVLPDEKGRLVLIPISEE-----EAKLKLCK--------IENKTT 127
Query: 278 VEGGHL 283
V+GG +
Sbjct: 128 VKGGKI 133
|
Length = 237 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607
GHTG V +A +L SGS D ++R+WD
Sbjct: 7 LKGHTGPVTSVAFS---------PDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|224388 COG1471, RPS4A, Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 215 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCK 263
P MDV+S+ G+HY ++ D GRL L PIS E E LCK
Sbjct: 82 PVGLMDVISI-PKTGEHYRVLPDEKGRLVLHPISAE-----EASYKLCK 124
|
Length = 241 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607
GHTG V +A + L SGS D +I++WD
Sbjct: 8 LKGHTGPVTSVAFS---------PDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1471 | |||
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.91 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.9 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.9 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.87 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.86 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.86 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.86 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.86 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.86 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.86 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.86 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.84 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.83 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.83 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.82 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.82 | |
| PTZ00421 | 493 | coronin; Provisional | 99.81 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.81 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.8 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.79 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.78 | |
| PTZ00420 | 568 | coronin; Provisional | 99.77 | |
| PTZ00421 | 493 | coronin; Provisional | 99.77 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.77 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.77 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.76 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.76 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.76 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.75 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.73 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.73 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.71 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.71 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.71 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.71 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.71 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.7 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.68 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.67 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.67 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.66 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.64 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.64 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.64 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.63 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.62 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.62 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.62 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.61 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.61 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.6 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.59 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.57 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.57 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.55 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.53 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.53 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.53 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.53 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.52 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.52 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.51 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.51 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.5 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.5 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.48 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.48 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.47 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.47 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.45 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.44 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.43 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.42 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.42 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.4 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.39 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.38 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.36 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.35 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.33 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.33 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.3 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.3 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.27 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.27 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.26 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.24 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.22 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.21 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.2 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.18 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.15 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.15 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.15 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.14 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.13 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.12 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.06 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.04 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.02 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.02 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.98 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.98 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.96 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.93 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.92 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.91 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.71 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.68 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.68 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.62 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.62 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.62 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.59 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.56 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.54 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.53 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.34 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.28 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.23 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.19 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.15 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.14 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.14 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.12 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.11 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.11 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.09 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.07 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.06 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.04 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.02 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.02 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.95 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.9 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.77 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.74 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.72 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.71 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.66 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.62 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.62 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.6 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.54 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.48 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.42 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.34 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.32 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.26 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.12 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.07 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.06 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.04 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.98 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.95 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 96.91 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.91 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.88 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.83 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.79 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.75 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.73 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.69 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.67 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.58 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.56 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.51 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.4 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.15 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.14 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.11 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.08 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.04 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.0 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.96 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.87 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.79 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 95.78 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.74 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.65 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.57 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.4 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.39 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.14 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.8 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.64 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.47 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.93 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.52 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 93.17 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 92.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.74 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.52 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.45 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 92.3 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.26 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.25 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.48 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 91.36 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 91.3 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 91.29 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 91.25 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 90.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 90.34 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.99 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 88.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 88.08 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 86.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.41 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 85.83 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 85.53 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 85.03 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 84.24 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 83.97 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 83.13 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 82.99 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 81.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 81.4 |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=355.26 Aligned_cols=544 Identities=15% Similarity=0.139 Sum_probs=364.6
Q ss_pred ceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecc-cccceeEeeeccccccccCccccccccccccccc
Q 000473 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1471)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G-H~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1471)
..||+++++||++.|++.+..+.+++|++.+ + +.+..+-+ |++||--++
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~t---g--k~irswKa~He~Pvi~ma------------------------- 112 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPT---G--KLIRSWKAIHEAPVITMA------------------------- 112 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEccc---c--hHhHhHhhccCCCeEEEE-------------------------
Confidence 5699999999999999999999999999985 3 34444555 999999998
Q ss_pred ccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCC-CeEEEEcceecccCCccccccccccccc
Q 000473 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSN-PRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1471)
Q Consensus 96 ~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~-~~ll~~G~~~id~~~~~~~h~~~~i~~~ 174 (1471)
|.|.+..|++|+.||.++|||+..+.|....+-++ |....+.+.+.. .+++.+|..
T Consensus 113 --~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~~~~~~~lL~sg~~------------------- 169 (775)
T KOG0319|consen 113 --FDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFHPHWNRWLLASGAT------------------- 169 (775)
T ss_pred --EcCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeCCccchhheeecCC-------------------
Confidence 57778899999999999999999999999977652 334445555532 356777765
Q ss_pred ccccccCCCCCCCCCceEEEEeCcceEE-EEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCc
Q 000473 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTI-VQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1471)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~v~D~~t~~~-l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~ 253 (1471)
++.+.+||..+... +.++.. +.+. ++.++|++ |+ ..++.++.|..+-|||+..-+.
T Consensus 170 --------------D~~v~vwnl~~~~tcl~~~~~-H~S~--vtsL~~~~---d~--~~~ls~~RDkvi~vwd~~~~~~- 226 (775)
T KOG0319|consen 170 --------------DGTVRVWNLNDKRTCLHTMIL-HKSA--VTSLAFSE---DS--LELLSVGRDKVIIVWDLVQYKK- 226 (775)
T ss_pred --------------CceEEEEEcccCchHHHHHHh-hhhh--eeeeeecc---CC--ceEEEeccCcEEEEeehhhhhh-
Confidence 48999999886554 333333 3444 89999984 33 3477779999999999954320
Q ss_pred ccccCCCcccCCCcccceeccCCcccCceEEEEecC-----CcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeecCC
Q 000473 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC-----GNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1471)
Q Consensus 254 ~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~-----g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~ 328 (1471)
...-++| +..+.+.+-++ |..+.++++.+ .++.|+... +.. +.....+
T Consensus 227 --l~~lp~y----------------e~~E~vv~l~~~~~~~~~~~~TaG~~g-~~~~~d~es--~~~------~~~~~~~ 279 (775)
T KOG0319|consen 227 --LKTLPLY----------------ESLESVVRLREELGGKGEYIITAGGSG-VVQYWDSES--GKC------VYKQRQS 279 (775)
T ss_pred --hheechh----------------hheeeEEEechhcCCcceEEEEecCCc-eEEEEeccc--chh------hhhhccC
Confidence 1111122 22344444444 55777777766 566677665 111 0001111
Q ss_pred CCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEeec
Q 000473 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQM 408 (1471)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~ 408 (1471)
+.+-+..+..... ...+.+-+.+....+|...... .+....+-.+.-.+..|...
T Consensus 280 ~~~e~~~~~~~~~----------------~~~~l~vtaeQnl~l~d~~~l~---------i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 280 DSEEIDHLLAIES----------------MSQLLLVTAEQNLFLYDEDELT---------IVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred Cchhhhcceeccc----------------cCceEEEEccceEEEEEccccE---------EehhhcCCchhheeeeecCC
Confidence 1111222222222 1133334444445555221000 00000011111122223322
Q ss_pred ceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccc
Q 000473 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP 488 (1471)
Q Consensus 409 ~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~ 488 (1471)
....+.+.+ . .|.++++.++. ..|+ +..|....+-.... -.+| +-+++.+.+.+++
T Consensus 335 e~~~laVAT------N----s~~lr~y~~~~------~~c~-ii~GH~e~vlSL~~----~~~g---~llat~sKD~svi 390 (775)
T KOG0319|consen 335 EESHLAVAT------N----SPELRLYTLPT------SYCQ-IIPGHTEAVLSLDV----WSSG---DLLATGSKDKSVI 390 (775)
T ss_pred ccceEEEEe------C----CCceEEEecCC------CceE-EEeCchhheeeeee----cccC---cEEEEecCCceEE
Confidence 212222221 1 24466664322 2334 33343221110000 0122 1367888899999
Q ss_pred cccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC---cceEEE
Q 000473 489 RSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS---HVSRQY 565 (1471)
Q Consensus 489 ~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s---~~~~~~ 565 (1471)
+|++.++...-.+.....+|...|+++++. .-.+..+++++.|+++++|.+.. .. +... ..+..+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~---~~~asffvsvS~D~tlK~W~l~~--s~-------~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGS---KLGASFFVSVSQDCTLKLWDLPK--SK-------ETAFPIVLTCRYT 458 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeec---ccCccEEEEecCCceEEEecCCC--cc-------cccccceehhhHH
Confidence 999966544445666678999999998862 22345899999999999955441 10 0111 011123
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000473 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 566 l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~ 645 (1471)
-..|...|+|++++|+ ..+++|||.|++.++|++.....+.++.+|+..|+++.|+|. .++++|+
T Consensus 459 ~~aHdKdIN~Vaia~n---------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq~laT~ 523 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPN---------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQLLATC 523 (775)
T ss_pred HHhhcccccceEecCC---------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cceeEec
Confidence 3579999999999997 899999999999999999999999999999999999999999 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000473 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1471)
Q Consensus 646 s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~ 725 (1471)
|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.| |-+++|++++++|++++.+|..+|...
T Consensus 524 SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad--------GliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 524 SGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD--------GLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred cCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC--------CcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999987
Q ss_pred eeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 726 ~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
...+.. ..+++-..|+++-.|.
T Consensus 596 ~~~~~~-----------------~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPLL-----------------DMFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCcc-----------------ceeEecCCCeEEEEee
Confidence 433211 1233344589999986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.18 Aligned_cols=360 Identities=19% Similarity=0.211 Sum_probs=269.0
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
.+...|-|++|+|||+.||||+.|.++++||+.+ ..|..+..||...|.|++
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcva----------------------- 164 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVA----------------------- 164 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEE-----------------------
Confidence 4556799999999999999999999999999996 468889999999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEc-------CCCCeEEEEcceecccCCccccc
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTL-------PSNPRYVCIGCCFIDTNQLSDHH 166 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~-------s~~~~ll~~G~~~id~~~~~~~h 166 (1471)
++||++.||||+.||+|++||-.+|+++-+ .++ |.-.-|..+ .+.+++++.+.-
T Consensus 165 ----wsPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~---gH~K~It~Lawep~hl~p~~r~las~sk----------- 225 (480)
T KOG0271|consen 165 ----WSPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALR---GHKKWITALAWEPLHLVPPCRRLASSSK----------- 225 (480)
T ss_pred ----ECCCcchhhccccCCeEEEecCCCCCcccc-ccc---CcccceeEEeecccccCCCccceecccC-----------
Confidence 688899999999999999999999987743 333 222222211 145555554432
Q ss_pred ccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEE
Q 000473 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1471)
Q Consensus 167 ~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~ 246 (1471)
++.|+|||+..++++.++.. +..+ |+|+..- |+ +.++.++.|++|++|+
T Consensus 226 ----------------------Dg~vrIWd~~~~~~~~~lsg-HT~~--VTCvrwG-----G~-gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 226 ----------------------DGSVRIWDTKLGTCVRTLSG-HTAS--VTCVRWG-----GE-GLIYSGSQDRTIKVWR 274 (480)
T ss_pred ----------------------CCCEEEEEccCceEEEEecc-Cccc--eEEEEEc-----CC-ceEEecCCCceEEEEE
Confidence 38999999999999998876 5444 8888732 22 6788889999999999
Q ss_pred CCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeec
Q 000473 247 ISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEG 326 (1471)
Q Consensus 247 l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~ 326 (1471)
...+.. + +.+.+|...++.++++++ +.+ ..+. +
T Consensus 275 a~dG~~---------------~---r~lkGHahwvN~lalsTd-----------y~L---Rtga----f----------- 307 (480)
T KOG0271|consen 275 ALDGKL---------------C---RELKGHAHWVNHLALSTD-----------YVL---RTGA----F----------- 307 (480)
T ss_pred ccchhH---------------H---Hhhcccchheeeeeccch-----------hhh---hccc----c-----------
Confidence 876521 1 123334444444443211 111 0000 0
Q ss_pred CCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEe
Q 000473 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1471)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~ 406 (1471)
...+ .. |.
T Consensus 308 ------------~~t~----------------~~------------------------------~~-------------- 315 (480)
T KOG0271|consen 308 ------------DHTG----------------RK------------------------------PK-------------- 315 (480)
T ss_pred ------------cccc----------------cc------------------------------CC--------------
Confidence 0000 00 00
Q ss_pred ecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCc
Q 000473 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDT 486 (1471)
Q Consensus 407 ~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~ 486 (1471)
| .. ..+. +.+.+ |
T Consensus 316 -----------------------~-~s--e~~~---------~Al~r------Y-------------------------- 328 (480)
T KOG0271|consen 316 -----------------------S-FS--EEQK---------KALER------Y-------------------------- 328 (480)
T ss_pred -----------------------C-hH--HHHH---------HHHHH------H--------------------------
Confidence 0 00 0000 00000 0
Q ss_pred cccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE
Q 000473 487 VPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1471)
Q Consensus 487 v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l 566 (1471)
+ .+. .-.|.++++|+.|+++.+ |+ ..++.+++..+
T Consensus 329 ----~-------------------~~~--------~~~~erlVSgsDd~tlfl--W~------------p~~~kkpi~rm 363 (480)
T KOG0271|consen 329 ----E-------------------AVL--------KDSGERLVSGSDDFTLFL--WN------------PFKSKKPITRM 363 (480)
T ss_pred ----H-------------------Hhh--------ccCcceeEEecCCceEEE--ec------------ccccccchhhh
Confidence 0 000 011126999999999999 55 12344678888
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 567 ~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s 646 (1471)
.||..-|+.+.|+|| +++++|+|-|.+|++||..+|+.+.+|++|.++|.+++|+.| .++++||+
T Consensus 364 tgHq~lVn~V~fSPd---------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------sRLlVS~S 428 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPD---------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------SRLLVSGS 428 (480)
T ss_pred hchhhheeeEEECCC---------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------ccEEEEcC
Confidence 999999999999998 899999999999999999999999999999999999999999 89999999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 647 ~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
.|.++++|++++.+....++||.+.|.++.|+|||..+++|+.| ..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd--------kv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD--------KVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc--------eEEEeec
Confidence 99999999999999999999999999999999999999999998 9999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=328.85 Aligned_cols=511 Identities=15% Similarity=0.178 Sum_probs=341.2
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
.++.+|--++|.|.|..|+||+.||.|++||+.. + ...+.|.||.+.|.++.| +|
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~---~--~~th~fkG~gGvVssl~F-~~------------------- 157 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN---G--YCTHSFKGHGGVVSSLLF-HP------------------- 157 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeC---C--EEEEEecCCCceEEEEEe-CC-------------------
Confidence 3667899999999999999999999999999983 3 356889999999999985 11
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEEcCCCe-EEEeeeCCCCCCCCcEEEEcCCCC-eEEEEcceecccCCcccccccccc
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGH-CRRRRKLPPWVGSPSVICTLPSNP-RYVCIGCCFIDTNQLSDHHSFESV 171 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas~DG~I~VWdv~~G~-ci~~~~l~~~~g~~~~i~~~s~~~-~ll~~G~~~id~~~~~~~h~~~~i 171 (1471)
.+....|++|..|+++++||+.+++ |+.....+ -+...-..+.+++ .+++.|.+
T Consensus 158 -----~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H---~S~vtsL~~~~d~~~~ls~~RD---------------- 213 (775)
T KOG0319|consen 158 -----HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILH---KSAVTSLAFSEDSLELLSVGRD---------------- 213 (775)
T ss_pred -----ccchhheeecCCCceEEEEEcccCchHHHHHHhh---hhheeeeeeccCCceEEEeccC----------------
Confidence 1223679999999999999999654 45555555 3444444555555 56666665
Q ss_pred cccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCC
Q 000473 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1471)
Q Consensus 172 ~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~ 251 (1471)
..+.+||..+.+.+.++.- ..+ +-.+.+...+.++++..+++++.+|.+++|+.+...
T Consensus 214 ------------------kvi~vwd~~~~~~l~~lp~-ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 214 ------------------KVIIVWDLVQYKKLKTLPL-YES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred ------------------cEEEEeehhhhhhhheech-hhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 7889999988888777765 322 344444433223333567777999999999998764
Q ss_pred CcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeecCCCCc
Q 000473 252 HLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNS 331 (1471)
Q Consensus 252 ~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~ 331 (1471)
........+ ..| + ...+.+...++.++..+....++ +|... .....++. ..+.
T Consensus 272 ~~~~~~~~~--~~e--~------------~~~~~~~~~~~~l~vtaeQnl~l--~d~~~----l~i~k~iv-----G~nd 324 (775)
T KOG0319|consen 272 CVYKQRQSD--SEE--I------------DHLLAIESMSQLLLVTAEQNLFL--YDEDE----LTIVKQIV-----GYND 324 (775)
T ss_pred hhhhhccCC--chh--h------------hcceeccccCceEEEEccceEEE--EEccc----cEEehhhc-----CCch
Confidence 322111111 000 1 12233334455555545544333 54433 10000000 1111
Q ss_pred eeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEeeccee
Q 000473 332 YVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLY 411 (1471)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~ 411 (1471)
-....-|.... ...++|.+..+..++|.++...- . -+ ++..+..+++.-...|..
T Consensus 325 EI~Dm~~lG~e---------------~~~laVATNs~~lr~y~~~~~~c--~-----ii---~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 325 EILDMKFLGPE---------------ESHLAVATNSPELRLYTLPTSYC--Q-----II---PGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred hheeeeecCCc---------------cceEEEEeCCCceEEEecCCCce--E-----EE---eCchhheeeeeecccCcE
Confidence 11122233222 23678888899999996653321 1 11 112222233332233334
Q ss_pred eEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCcccccc
Q 000473 412 LLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSE 491 (1471)
Q Consensus 412 L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd 491 (1471)
+.+.. . +..+.+|.+..+ .....|--...|....+-.++. +..|- --+.+.+.+.++++|+
T Consensus 380 lat~s-----K------D~svilWr~~~~--~~~~~~~a~~~gH~~svgava~----~~~~a--sffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 380 LATGS-----K------DKSVILWRLNNN--CSKSLCVAQANGHTNSVGAVAG----SKLGA--SFFVSVSQDCTLKLWD 440 (775)
T ss_pred EEEec-----C------CceEEEEEecCC--cchhhhhhhhcccccccceeee----cccCc--cEEEEecCCceEEEec
Confidence 44332 1 234889976111 1111100111111100000000 00110 0266778889999999
Q ss_pred ccCCCCCC-----CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE
Q 000473 492 HVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1471)
Q Consensus 492 ~~~~~~~g-----~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l 566 (1471)
+...++.. ++..+...|.+.|+|+++.+... .+++|+.|.+.+|| + .+......+|
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk----LiAT~SqDktaKiW--~-------------le~~~l~~vL 501 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK----LIATGSQDKTAKIW--D-------------LEQLRLLGVL 501 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCc----eEEecccccceeee--c-------------ccCceEEEEe
Confidence 98743322 33445678999999999665555 89999999999993 3 3455788999
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 567 ~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s 646 (1471)
.||+..|+|+.|+|. .+.++|+|.|+||++|.+.+..|+.+|.||...|....|-.+ +..|+|++
T Consensus 502 sGH~RGvw~V~Fs~~---------dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~------~~qliS~~ 566 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKN---------DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN------GKQLISAG 566 (775)
T ss_pred eCCccceEEEEeccc---------cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC------CcEEEecc
Confidence 999999999999997 899999999999999999999999999999999999999988 99999999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 647 ~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.||-++||+++++.|++++.+|.+.|+++.-+|.+.++++|+.| |.|.+|.=-|
T Consensus 567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~D--------g~i~~wkD~T 620 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGD--------GRIIFWKDVT 620 (775)
T ss_pred CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCC--------eEEEEeecCc
Confidence 99999999999999999999999999999999999999999998 9999996433
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=310.49 Aligned_cols=580 Identities=16% Similarity=0.121 Sum_probs=374.9
Q ss_pred ceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccc
Q 000473 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1471)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~ 96 (1471)
..|||+.-+||...||.|.+||.|++|++.+ . .+..++.||+++|+++.
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s---~--~~~~tfngHK~AVt~l~-------------------------- 114 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES---E--EILITFNGHKAAVTTLK-------------------------- 114 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC---C--ceeeeecccccceEEEE--------------------------
Confidence 4699999999999999999999999999984 2 46678889999999998
Q ss_pred cccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccccccccc
Q 000473 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1471)
Q Consensus 97 ~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~ 176 (1471)
+...|.+|+|||.|+.|.|||+..-.-+.+ +.++-.+-+...+..++..+++++.+
T Consensus 115 -fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r--L~GHkd~iT~~~F~~~~~~lvS~sKD--------------------- 170 (888)
T KOG0306|consen 115 -FDKIGTRLASGSKDTDIIVWDLVGEEGLFR--LRGHKDSITQALFLNGDSFLVSVSKD--------------------- 170 (888)
T ss_pred -EcccCceEeecCCCccEEEEEeccceeeEE--eecchHHHhHHhccCCCeEEEEeccC---------------------
Confidence 567788999999999999999975443433 33111333444566678888888876
Q ss_pred ccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCcccc
Q 000473 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1471)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~~ 256 (1471)
..|.+||..+..+..+... +. +.+..+++.. ..+++++.|+.++||++.-.. .+
T Consensus 171 -------------s~iK~WdL~tqhCf~Thvd-~r--~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~---D~ 224 (888)
T KOG0306|consen 171 -------------SMIKFWDLETQHCFETHVD-HR--GEIWALVLDE-------KLLVTAGTDSELKVWELAFED---DE 224 (888)
T ss_pred -------------ceEEEEecccceeeeEEec-cc--ceEEEEEEec-------ceEEEEecCCceEEEEeeccc---cc
Confidence 7899999999999988776 22 3378888761 236666999999999995441 11
Q ss_pred cCCCcccCCCcccceeccCCcccCceEEEEecC--CcEEEEEeCCeEE--EEEcCCCcceeee----eeecceeEeecCC
Q 000473 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC--GNIIALVLKDHCI--FRLLGSGSTIGEI----CFVDNLFCLEGGS 328 (1471)
Q Consensus 257 ~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~--g~~l~~~~~~~~~--~~l~d~~~~ige~----~~~~~~l~~~~~~ 328 (1471)
.....+..-++.+.+..+ +.++.+.+..+ ++++++.+.+..+ +++.......+.. .........+...
T Consensus 225 ~~~~~~~s~~~~G~~~rq----sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQ----SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccceeeccceeeec----cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 111111111111111111 12344444444 6777776665431 2222221100000 0000000000000
Q ss_pred ---CCc-----eeeeeEeecchhhhhhcccc-cccccccceEEEEcCCCcEEEEEeecCCCCCcc-cCeeeecCccCCCC
Q 000473 329 ---TNS-----YVIGAMFLERVVAEKIENTM-GVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY-EPHFEIPAVSYPSG 398 (1471)
Q Consensus 329 ---~~~-----~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~-~~~~~ip~v~~~~~ 398 (1471)
... .-+..+.... .+.... -+.+... +..|--.+..++.|.++........ ...-.+ ...+.+.
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~----kiks~dv~~~~~~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~ 374 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSA----KIKSFDVTPSGGTE-NTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRS 374 (888)
T ss_pred cchhhhHHHHHHHHHheechh----heeEEEEEecCCcc-eeEEEeecCceEEEEeccCCCCCcccccccee-eeccchh
Confidence 000 0000000000 000000 0011111 2333355667778888763322110 000011 1234555
Q ss_pred ceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCccccee
Q 000473 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1471)
Q Consensus 399 ~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l 478 (1471)
+...+.++.++..+.+... + .+.+|... ..+..+.+.++.....-+++. |- .+
T Consensus 375 dVRsl~vS~d~~~~~Sga~------~------SikiWn~~-----t~kciRTi~~~y~l~~~Fvpg------d~----~I 427 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAG------E------SIKIWNRD-----TLKCIRTITCGYILASKFVPG------DR----YI 427 (888)
T ss_pred heeEEEeecCceeeeecCC------C------cEEEEEcc-----CcceeEEeccccEEEEEecCC------Cc----eE
Confidence 6566667777666655421 2 37888632 122234555552222222221 11 35
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
.....+|.+.++|.... .+..+...|.+.+.++...+++. .+++|+.|.+|++|++.+.... ++..-.+-
T Consensus 428 v~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~----g~vT~saDktVkfWdf~l~~~~--~gt~~k~l 497 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNK----GFVTGSADKTVKFWDFKLVVSV--PGTQKKVL 497 (888)
T ss_pred EEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCC----ceEEecCCcEEEEEeEEEEecc--Ccccceee
Confidence 55667778888887653 45667789999999999888887 8999999999999766543221 11000000
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+-+..++| .-.+.|.|+.++|| +++|+.+=-|.+|++|-+++-+..-.+.||.-||.++..+||
T Consensus 498 sl~~~rtL-el~ddvL~v~~Spd---------gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------ 561 (888)
T KOG0306|consen 498 SLKHTRTL-ELEDDVLCVSVSPD---------GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------ 561 (888)
T ss_pred eeccceEE-eccccEEEEEEcCC---------CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------
Confidence 00111122 23567999999998 899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
+..++|||.|++|++|-++-|.|.+.+.+|.+.|++|.|-|...++.+++.| +.|+-||.+..++++++.||
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD--------~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD--------GKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc--------ceEEeechhhhhhheeeccc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
...+.+.... .+|++++ +.+.|.++|.|.-
T Consensus 634 ~~ev~cLav~------------~~G~~vv-----s~shD~sIRlwE~ 663 (888)
T KOG0306|consen 634 HSEVWCLAVS------------PNGSFVV-----SSSHDKSIRLWER 663 (888)
T ss_pred hheeeeeEEc------------CCCCeEE-----eccCCceeEeeec
Confidence 9988887444 2344433 4455999999963
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=294.81 Aligned_cols=196 Identities=25% Similarity=0.224 Sum_probs=168.4
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~s 579 (1471)
.+...+.+|...|+|+..-.+. .+.+|+.|++|++|+ ...|++.+.|+||...|+.++.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~g-----liySgS~DrtIkvw~---------------a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEG-----LIYSGSQDRTIKVWR---------------ALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred eEEEEeccCccceEEEEEcCCc-----eEEecCCCceEEEEE---------------ccchhHHHhhcccchheeeeecc
Confidence 3444566788889988744333 699999999999933 34578899999999999999988
Q ss_pred cCCCCc------ccCc---------------------CCCEEEEEECCCcEEEEECC-CCceEEEEeccCCCEEEEEECC
Q 000473 580 RMVGTA------KGWS---------------------FNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSP 631 (1471)
Q Consensus 580 pd~~~~------~~~~---------------------~~~~L~SGs~DgtI~lWDl~-tg~~l~~~~~H~~~V~~l~fsp 631 (1471)
.|..-. .+++ .++.|+||+.|+++.+|+-. +.+++.++.+|..-|..+.|+|
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 543100 0111 35679999999999999975 4568899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
| +.+++|++-|++|+|||-++|+.+..|+||-+.|+.|+|+.|.++|++|+.| .+++|||+++.++
T Consensus 378 d------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD--------sTLKvw~V~tkKl 443 (480)
T KOG0271|consen 378 D------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD--------STLKVWDVRTKKL 443 (480)
T ss_pred C------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC--------ceEEEEEeeeeee
Confidence 9 9999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCCCCceeeeeee
Q 000473 712 ERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 712 ~~~l~gH~~~v~~~~~~~ 729 (1471)
...|.||...|..+++.+
T Consensus 444 ~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSP 461 (480)
T ss_pred cccCCCCCceEEEEEecC
Confidence 999999999999998884
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=288.34 Aligned_cols=500 Identities=15% Similarity=0.174 Sum_probs=321.8
Q ss_pred CCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccc
Q 000473 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 15 p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1471)
+...||++.|..+|..|||||.|+.|++||+-. ..-+..|.||...||..-
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~-----E~Gl~rL~GHkd~iT~~~------------------------ 156 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG-----EEGLFRLRGHKDSITQAL------------------------ 156 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecc-----ceeeEEeecchHHHhHHh------------------------
Confidence 445699999999999999999999999999972 234567899999999886
Q ss_pred cccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCC-CeEEEEcce-ecccCCcccc--ccccc
Q 000473 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSN-PRYVCIGCC-FIDTNQLSDH--HSFES 170 (1471)
Q Consensus 95 ~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~-~~ll~~G~~-~id~~~~~~~--h~~~~ 170 (1471)
|..+..+|+|.|.|+.|++||+.+.+|..+.--+ ...+-.+.-+ .++++.|.. -+..|.+... ..+ +
T Consensus 157 ---F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-----r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~-~ 227 (888)
T KOG0306|consen 157 ---FLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDH-----RGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKE-T 227 (888)
T ss_pred ---ccCCCeEEEEeccCceEEEEecccceeeeEEecc-----cceEEEEEEecceEEEEecCCceEEEEeeccccccc-c
Confidence 4456788999999999999999999999874222 2333333312 344444431 1222222100 000 0
Q ss_pred ccccccccccCC-CCCCCCCceEEEEeCcceEEE-----------EEeec------------------------------
Q 000473 171 VEGDLVSEDKEV-PMKNPPKCTLVIVDTYGLTIV-----------QTVFH------------------------------ 208 (1471)
Q Consensus 171 i~~~~~~~d~~~-~~~~~~~~~I~v~D~~t~~~l-----------~tl~s------------------------------ 208 (1471)
.... ...... ..+.+....+...-..+.+.+ +.+++
T Consensus 228 ~~~~--s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~ 305 (888)
T KOG0306|consen 228 NRYI--STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEK 305 (888)
T ss_pred cccc--eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhh
Confidence 0000 000000 000000001111111111110 00000
Q ss_pred ----------CccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCcccccCCCcccCCCcccceeccCCcc
Q 000473 209 ----------GNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVV 278 (1471)
Q Consensus 209 ----------~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~ 278 (1471)
.-.....|..+++.+++ +....++.-+++++.++.++... +..+++. .+.. ....+|-
T Consensus 306 sl~~~i~r~~~ir~~~kiks~dv~~~~---~~~~~lv~l~nNtv~~ysl~~s~---~~~p~~~-----~~~~-i~~~GHR 373 (888)
T KOG0306|consen 306 SLSDEIKRLETIRTSAKIKSFDVTPSG---GTENTLVLLANNTVEWYSLENSG---KTSPEAD-----RTSN-IEIGGHR 373 (888)
T ss_pred hHHHHHHHHHheechhheeEEEEEecC---CcceeEEEeecCceEEEEeccCC---CCCcccc-----ccce-eeeccch
Confidence 00012357788888643 22335555788999999998731 1111111 1111 1234588
Q ss_pred cCceEEEEecCCcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeecCCCCceeeeeEeecchhhhhhccccccccccc
Q 000473 279 EGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFY 358 (1471)
Q Consensus 279 ~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 358 (1471)
.+++.+++|.+...+++++++..++|..++...+..+ +++ +.++..|... +
T Consensus 374 ~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi------------~~~-y~l~~~Fvpg----------------d 424 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI------------TCG-YILASKFVPG----------------D 424 (888)
T ss_pred hheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe------------ccc-cEEEEEecCC----------------C
Confidence 8899999999999999999999888776666544333 111 5566677644 3
Q ss_pred ceEEEEcCCCcEEEEEeecCCCC----CcccCeeeecCccCCCCceeeEEEeecceeeEEeeeeeccccccccccCeeEE
Q 000473 359 ENFAVWDNRGSAIVYAISYMNEK----FDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISV 434 (1471)
Q Consensus 359 ~~~~vw~~~G~~~vy~l~~~~~~----~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~v 434 (1471)
..++++..+|...+|.+...... .+...+|.+ ...+++...+.... +.++++
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi-------------~~~pD~~g~vT~sa-----------DktVkf 480 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI-------------SLSPDNKGFVTGSA-----------DKTVKF 480 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeee-------------eecCCCCceEEecC-----------CcEEEE
Confidence 47889999999999988533211 111122211 11122222222110 123444
Q ss_pred EEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccccccccCCCCCCCccccccccCccEEE
Q 000473 435 WSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS 514 (1471)
Q Consensus 435 wsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts 514 (1471)
|+...-.+..+.+.|. +++- .+..-.-+..|.|
T Consensus 481 Wdf~l~~~~~gt~~k~------------------------------------lsl~-----------~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKV------------------------------------LSLK-----------HTRTLELEDDVLC 513 (888)
T ss_pred EeEEEEeccCccccee------------------------------------eeec-----------cceEEeccccEEE
Confidence 4321000000000000 0000 0001122456888
Q ss_pred EEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEE
Q 000473 515 SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL 594 (1471)
Q Consensus 515 ~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L 594 (1471)
+.+.|+.. .++.|--|.++.|+..| +.+..-.|+||.-+|.|+.++|| +..+
T Consensus 514 v~~Spdgk----~LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDIS~D---------Skli 565 (888)
T KOG0306|consen 514 VSVSPDGK----LLAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDISPD---------SKLI 565 (888)
T ss_pred EEEcCCCc----EEEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEeccCC---------cCeE
Confidence 88555555 69999999999997766 34667789999999999999998 8999
Q ss_pred EEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEE
Q 000473 595 VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAK 674 (1471)
Q Consensus 595 ~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~ 674 (1471)
+|||.|.+|++|-++-|.|...|.+|...|.++.|.|. .+.|.++|.|+.|+-||-+..++++.+.+|...|+|
T Consensus 566 vTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred EeccCCCceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 99999999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 675 v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
++.+|+|.|+++++.| .+|++|....
T Consensus 640 Lav~~~G~~vvs~shD--------~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHD--------KSIRLWERTD 665 (888)
T ss_pred eEEcCCCCeEEeccCC--------ceeEeeeccC
Confidence 9999999999999999 9999998644
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-24 Score=259.15 Aligned_cols=524 Identities=15% Similarity=0.125 Sum_probs=320.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccccccccc
Q 000473 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1471)
Q Consensus 20 tava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s 99 (1471)
--+.|++||..+++- -.+.|-++|+.. -+....-+.+...|++++ .|
T Consensus 18 Gnl~ft~dG~sviSP-vGNrvsv~dLkn-----N~S~Tl~~e~~~NI~~ia---------------------------lS 64 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISP-VGNRVSVFDLKN-----NKSYTLPLETRYNITRIA---------------------------LS 64 (893)
T ss_pred CcEEECCCCCEEEec-cCCEEEEEEccC-----CcceeEEeecCCceEEEE---------------------------eC
Confidence 357899999888764 346799999984 233444557888999998 78
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCcccccccccccccccccc
Q 000473 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1471)
Q Consensus 100 ~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~~~d 179 (1471)
|++.+|++.-++|...+-++.....++....- .+....-++|+++++++|+.
T Consensus 65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~g------------------------ 116 (893)
T KOG0291|consen 65 PDGTLLLAVDERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCG------------------------ 116 (893)
T ss_pred CCceEEEEEcCCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEec------------------------
Confidence 99999999999999999998777777665543 23455678899999988875
Q ss_pred cCCCCCCCCCceEEEEeCcce-------EEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCC
Q 000473 180 KEVPMKNPPKCTLVIVDTYGL-------TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1471)
Q Consensus 180 ~~~~~~~~~~~~I~v~D~~t~-------~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~ 252 (1471)
.-+.||..... -.+...+-|+ -+.|..++++.|. ..+++|+.|-.++||.++..++
T Consensus 117 ----------n~lqiw~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws~DS-----r~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 117 ----------NLLQIWHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWSDDS-----RLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ----------ceeEEEecCcchhcccCcceEeeeecCC--ccceeEEEeccCC-----ceEEeccccceEEEEEeccccc
Confidence 34555554321 1122222223 3458899988432 3456669999999999997741
Q ss_pred cccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEE-EEcCCCcceeeeeeecceeEeecCCCCc
Q 000473 253 LDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF-RLLGSGSTIGEICFVDNLFCLEGGSTNS 331 (1471)
Q Consensus 253 ~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~-~l~d~~~~ige~~~~~~~l~~~~~~~~~ 331 (1471)
-.. .-.++|...+..--|..+...+.+++.++.++ |-++..- .+. -..+.. .+
T Consensus 180 ---~~~-------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P--~~~------~~~~kd--~e 233 (893)
T KOG0291|consen 180 ---LFT-------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRP--PEL------DKAEKD--EE 233 (893)
T ss_pred ---cce-------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCC--ccc------cccccc--cc
Confidence 001 12344666666666777788888888887643 3333111 000 000000 00
Q ss_pred eeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEeeccee
Q 000473 332 YVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLY 411 (1471)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~ 411 (1471)
| .++.......+. +-.=.+|....+-++ ++....+ ..+.+.+.-++.+.-...+-+
T Consensus 234 ----g----~~d~~~~~~~Ee-----k~~~~~~~k~~k~~l------n~~~~kv-----taa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 234 ----G----SDDEEMDEDGEE-----KTHKIFWYKTKKHYL------NQNSSKV-----TAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred ----c----cccccccccchh-----hhcceEEEEEEeeee------cccccce-----eeeeccCCceEEEEEecCCee
Confidence 0 000000000110 000011111100000 0000000 000111111111110011111
Q ss_pred -eEEeeeeeccccccccccCeeE-EEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCcccc
Q 000473 412 -LLRMETVCFHVEETSQWRPYIS-VWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPR 489 (1471)
Q Consensus 412 -L~~v~s~~~~~~~~~~~~P~v~-vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~ 489 (1471)
|+-+ |-.. +..+... +. ++.. ..| +..|.+ -....+.-+.+-+
T Consensus 290 ~Lyel--------------P~f~lih~LSis---~~---~I~t-----~~~--------N~tGDW--iA~g~~klgQLlV 334 (893)
T KOG0291|consen 290 GLYEL--------------PDFNLIHSLSIS---DQ---KILT-----VSF--------NSTGDW--IAFGCSKLGQLLV 334 (893)
T ss_pred EEEec--------------CCceEEEEeecc---cc---eeeE-----EEe--------cccCCE--EEEcCCccceEEE
Confidence 1111 1000 0000000 00 0000 000 111110 0011122244556
Q ss_pred ccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecC
Q 000473 490 SEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH 569 (1471)
Q Consensus 490 Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH 569 (1471)
|+.... ..+...++|...++++.|.++.. .+++|++||.|+| ||..++.|..+|..|
T Consensus 335 weWqsE----sYVlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKv---------------Wn~~SgfC~vTFteH 391 (893)
T KOG0291|consen 335 WEWQSE----SYVLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKV---------------WNTQSGFCFVTFTEH 391 (893)
T ss_pred EEeecc----ceeeeccccccceeeEEECCCCc----EEEeccCCCcEEE---------------EeccCceEEEEeccC
Confidence 665443 22334578999999999666665 8999999999999 446678999999999
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccC-CCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~-~~V~~l~fspd~~~~~~~~~l~S~s~D 648 (1471)
+..|+.+.|+.. ++.++|.|.||+|+.||+...+..++|..-. -...+++..|. |..++.|+.|
T Consensus 392 ts~Vt~v~f~~~---------g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s------GelV~AG~~d 456 (893)
T KOG0291|consen 392 TSGVTAVQFTAR---------GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS------GELVCAGAQD 456 (893)
T ss_pred CCceEEEEEEec---------CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC------CCEEEeeccc
Confidence 999999999986 8999999999999999999999988887543 23568888888 8999999988
Q ss_pred C-cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeee
Q 000473 649 F-SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1471)
Q Consensus 649 g-sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~ 727 (1471)
. .|.+|++++|+.+-.+.||.+||.+++|+|++..|++|+.| .+||+||+-......+--.+...++.+.|
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--------kTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--------KTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--------ceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 5 79999999999999999999999999999999999999988 99999999765322222345567777777
Q ss_pred eeccccccccceEEcCCccccccceeeccCCceEeecccccc
Q 000473 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 728 ~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
.| +|.......+ ||.+-.|+.+.-.
T Consensus 529 rP------------dG~elaVaTl-----dgqItf~d~~~~~ 553 (893)
T KOG0291|consen 529 RP------------DGKELAVATL-----DGQITFFDIKEAV 553 (893)
T ss_pred cC------------CCCeEEEEEe-----cceEEEEEhhhce
Confidence 74 2333333333 8889999876543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=271.02 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=139.3
Q ss_pred cCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCccc
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~ 587 (1471)
|...|.++++.++.. .+++|+.|..-+| ||+.++.++-.|.||...|.+++|+|+
T Consensus 302 Hs~~v~~iaf~~DGS----L~~tGGlD~~~Rv---------------WDlRtgr~im~L~gH~k~I~~V~fsPN------ 356 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGS----LAATGGLDSLGRV---------------WDLRTGRCIMFLAGHIKEILSVAFSPN------ 356 (459)
T ss_pred cccccceeEecCCCc----eeeccCccchhhe---------------eecccCcEEEEecccccceeeEeECCC------
Confidence 444455554333332 5677777776666 567788999999999999999999997
Q ss_pred CcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000473 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1471)
Q Consensus 588 ~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g 667 (1471)
|..|+|||.|++++|||++..+++.++.+|..-|+.|.|+|.. |.+|+|++.|++++||.-+++.+++.+.|
T Consensus 357 ---Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 357 ---GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred ---ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC-----CeEEEEcccCcceeeecCCCcccchhhcC
Confidence 9999999999999999999999999999999999999999964 88999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 668 h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
|.+.|.++..+||+.++++++.| .++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~D--------RT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFD--------RTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccC--------ceeeecc
Confidence 99999999999999999999999 9999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-25 Score=260.94 Aligned_cols=424 Identities=17% Similarity=0.183 Sum_probs=282.6
Q ss_pred CCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccc
Q 000473 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 15 p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1471)
+-..|+++.||.|-++|++||.|-++++|+++. .+.-....+.||+.+|.+.-
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~gHkd~Vvacf------------------------ 196 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALNGHKDYVVACF------------------------ 196 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEecc---ccccceEeccCCCcceEEEE------------------------
Confidence 334699999999999999999999999999984 22222446779999998875
Q ss_pred cccccCCCCEEEEEeCCCeEEEEEcCCC--eEEE---------------------------eeeCCCCC--CCCcEEEEc
Q 000473 95 MGKSSLDNGALISACTDGVLCVWSRSSG--HCRR---------------------------RRKLPPWV--GSPSVICTL 143 (1471)
Q Consensus 95 ~~~~s~d~~~LaSas~DG~I~VWdv~~G--~ci~---------------------------~~~l~~~~--g~~~~i~~~ 143 (1471)
|..++.-+.+.|.||.+++|-.+.. .... ..+-++-. ++-....+|
T Consensus 197 ---F~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 197 ---FGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred ---eccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 5667778999999999999987611 0000 00000000 011222344
Q ss_pred CCCCeEEEEcceecccCCcccccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEee
Q 000473 144 PSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVS 223 (1471)
Q Consensus 144 s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~ 223 (1471)
++...++++|.. ++...+++..+..+++.+.-+. . +|..+.|..
T Consensus 274 H~~t~~lvvgFs---------------------------------sG~f~LyelP~f~lih~LSis~-~--~I~t~~~N~ 317 (893)
T KOG0291|consen 274 HKGTNLLVVGFS---------------------------------SGEFGLYELPDFNLIHSLSISD-Q--KILTVSFNS 317 (893)
T ss_pred cCCceEEEEEec---------------------------------CCeeEEEecCCceEEEEeeccc-c--eeeEEEecc
Confidence 455555555543 3666678888877777776522 2 378888764
Q ss_pred ecCCCCceeEEEE-eCCCcEEEEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEE
Q 000473 224 LGEDMGKHYGLMV-DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCI 302 (1471)
Q Consensus 224 ~~~d~~~~~llva-s~dG~V~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~ 302 (1471)
.+ +.+.+| +.-|.+-||+...+. -+-.+++|......++++|||+.+++++.++ .
T Consensus 318 tG-----DWiA~g~~klgQLlVweWqsEs------------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-K 373 (893)
T KOG0291|consen 318 TG-----DWIAFGCSKLGQLLVWEWQSES------------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDG-K 373 (893)
T ss_pred cC-----CEEEEcCCccceEEEEEeeccc------------------eeeeccccccceeeEEECCCCcEEEeccCCC-c
Confidence 43 678887 666899999998762 1244677888999999999999999998887 4
Q ss_pred EEEcCCCcceeeeeeecceeEeecCCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCC
Q 000473 303 FRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKF 382 (1471)
Q Consensus 303 ~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~ 382 (1471)
+++||..+ -+|.. .|.+... .+
T Consensus 374 VKvWn~~S----------gfC~v-----------TFteHts----------------~V--------------------- 395 (893)
T KOG0291|consen 374 VKVWNTQS----------GFCFV-----------TFTEHTS----------------GV--------------------- 395 (893)
T ss_pred EEEEeccC----------ceEEE-----------EeccCCC----------------ce---------------------
Confidence 56676554 11211 1111100 00
Q ss_pred cccCeeeecCccCCCCceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeecc
Q 000473 383 DYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVN 462 (1471)
Q Consensus 383 ~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~ 462 (1471)
--+.|...++.+++
T Consensus 396 ------------------t~v~f~~~g~~lls------------------------------------------------ 409 (893)
T KOG0291|consen 396 ------------------TAVQFTARGNVLLS------------------------------------------------ 409 (893)
T ss_pred ------------------EEEEEEecCCEEEE------------------------------------------------
Confidence 00111122222221
Q ss_pred ccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccc-CccEEEEEeeccccccCCEEEEEEcCC-cEEEE
Q 000473 463 NSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK-EKIVSSSMVISESFYAPYAIVYGFFSG-EIEVI 540 (1471)
Q Consensus 463 ~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h-~~~Vts~~~is~~~f~P~~lv~Gs~DG-~I~V~ 540 (1471)
++-+|+|+.||+.+-+ ...+|... +....|++.-+... .+..|..|. .|.|
T Consensus 410 ------------------sSLDGtVRAwDlkRYr----NfRTft~P~p~QfscvavD~sGe----lV~AG~~d~F~Ifv- 462 (893)
T KOG0291|consen 410 ------------------SSLDGTVRAWDLKRYR----NFRTFTSPEPIQFSCVAVDPSGE----LVCAGAQDSFEIFV- 462 (893)
T ss_pred ------------------eecCCeEEeeeecccc----eeeeecCCCceeeeEEEEcCCCC----EEEeeccceEEEEE-
Confidence 2223344444443321 11222211 12234454333333 344444432 3555
Q ss_pred EecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCce-EEEEec
Q 000473 541 QFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVMHH 619 (1471)
Q Consensus 541 ~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~-l~~~~~ 619 (1471)
|++++|+.+-.|.||.++|.+++|+|+ +..|+|||+|.|||+||+....- ..++ .
T Consensus 463 --------------WS~qTGqllDiLsGHEgPVs~l~f~~~---------~~~LaS~SWDkTVRiW~if~s~~~vEtl-~ 518 (893)
T KOG0291|consen 463 --------------WSVQTGQLLDILSGHEGPVSGLSFSPD---------GSLLASGSWDKTVRIWDIFSSSGTVETL-E 518 (893)
T ss_pred --------------EEeecCeeeehhcCCCCcceeeEEccc---------cCeEEeccccceEEEEEeeccCceeeeE-e
Confidence 457789999999999999999999998 89999999999999999975532 3333 4
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--------------------CCCCcEEEEEcC
Q 000473 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--------------------HPNYPAKVVWDC 679 (1471)
Q Consensus 620 H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g--------------------h~~~V~~v~~sp 679 (1471)
+...|..+.|+|+ |+.+|.+..||.|.+||.+.+..+..+.| .....+.+++++
T Consensus 519 i~sdvl~vsfrPd------G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 519 IRSDVLAVSFRPD------GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred eccceeEEEEcCC------CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 6678999999999 99999999999999999987655533332 123678999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 680 dg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
||.+|++|+.. ..|.+||+.++-+++.+.-
T Consensus 593 DG~~IlAgG~s--------n~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 593 DGKCILAGGES--------NSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred CCCEEEecCCc--------ccEEEEECchhheeeeEEe
Confidence 99999999998 8999999999999887763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=246.54 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=174.1
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
.+|.+.++|+.|..+. .|++|+.|.++.+ ||+++++..+.|.||++.|.+|.++|.
T Consensus 142 ~gHtgylScC~f~dD~-----~ilT~SGD~TCal---------------WDie~g~~~~~f~GH~gDV~slsl~p~---- 197 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDN-----HILTGSGDMTCAL---------------WDIETGQQTQVFHGHTGDVMSLSLSPS---- 197 (343)
T ss_pred cCccceeEEEEEcCCC-----ceEecCCCceEEE---------------EEcccceEEEEecCCcccEEEEecCCC----
Confidence 4566777777766655 4999999999988 568889999999999999999999994
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~ 665 (1471)
+++.++||+.|++.++||++.+.+.+.|.+|...|.+|.|.|+ |.-|++|++|++.++||++..+.+..+
T Consensus 198 ----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 198 ----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred ----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCcEEeee
Confidence 2899999999999999999999999999999999999999999 999999999999999999999998888
Q ss_pred cCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcC
Q 000473 666 PGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1471)
Q Consensus 666 ~gh--~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g 743 (1471)
... ..+|++|+||-.|++|++|..| .++.|||.-.++.+..|.||..+|.++..++. .--+.+|
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d--------~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D------G~av~Tg 333 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDD--------FTCNVWDTLKGERVGVLAGHENRVSCLGVSPD------GMAVATG 333 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecC--------CceeEeeccccceEEEeeccCCeeEEEEECCC------CcEEEec
Confidence 632 3478999999999999999888 99999999999999999999999999877731 1123344
Q ss_pred CccccccceeeccCCceEeec
Q 000473 744 NTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 744 ~~~~s~~l~~~~~D~tir~w~ 764 (1471)
++ |.++|+|.
T Consensus 334 SW-----------Ds~lriW~ 343 (343)
T KOG0286|consen 334 SW-----------DSTLRIWA 343 (343)
T ss_pred ch-----------hHheeecC
Confidence 44 88899884
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=272.22 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=209.5
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc------cc----
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL------FE---- 546 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~------l~---- 546 (1471)
.+++.+.+|.+++|+..+. +..++|.+|...|.++.+.|... ...+++|+.||++++|.++. +.
T Consensus 189 ~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~ 262 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKLSQETPLQDLEGHLA 262 (459)
T ss_pred eEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence 4677888899999998764 67789999999999998555420 01799999999999976532 11
Q ss_pred ---------------cC--CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC
Q 000473 547 ---------------RH--NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1471)
Q Consensus 547 ---------------~~--d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~ 609 (1471)
.. |.+-++||+.++.......||...|.+++|+|| |.+++|||.|..-+|||++
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D---------GSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD---------GSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCC---------CceeeccCccchhheeecc
Confidence 11 445578999999888888999999999999998 9999999999999999999
Q ss_pred CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEE
Q 000473 610 SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLC 688 (1471)
Q Consensus 610 tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~sp-dg~~L~sgs 688 (1471)
+|+++..+.+|..+|.+|.|+|+ |..++|||.|++++|||++..+++.++++|.+-|+.|+|+| .|.+|+|++
T Consensus 334 tgr~im~L~gH~k~I~~V~fsPN------Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 334 TGRCIMFLAGHIKEILSVAFSPN------GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cCcEEEEecccccceeeEeECCC------ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999 788999999
Q ss_pred cCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 689 RDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 689 ~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
.| ++++||..+++++++++.||.+.|+.+...+ ++.. +.+.+-|.++|.|.
T Consensus 408 yD--------~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~------------d~~~-----i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YD--------NTVKIWSTRTWSPLKSLAGHEGKVISLDISP------------DSQA-----IATSSFDRTIKLWR 458 (459)
T ss_pred cC--------cceeeecCCCcccchhhcCCccceEEEEecc------------CCce-----EEEeccCceeeecc
Confidence 98 9999999999999999999999999986662 1222 33444599999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-23 Score=239.66 Aligned_cols=533 Identities=12% Similarity=0.070 Sum_probs=311.4
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
-++|.||...+||.|-++|+|...|.|++||.. ..+.-++..+.--+++|.+|+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt---~~~hiLKnef~v~aG~I~Di~----------------------- 110 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT---QKEHILKNEFQVLAGPIKDIS----------------------- 110 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEecc---Ccceeeeeeeeecccccccce-----------------------
Confidence 457999999999999999999999999999987 334556666777788999998
Q ss_pred ccccccCCCCEEEEEeCC----CeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCC-CC-eEEEEcceecccCCcccccc
Q 000473 94 VMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NP-RYVCIGCCFIDTNQLSDHHS 167 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas~D----G~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~-~ll~~G~~~id~~~~~~~h~ 167 (1471)
++.|+++++..++. |.+.+||. |.-+-...-+ ......+.+.+ ++ |++++|.+
T Consensus 111 ----Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~Gh---Sr~ins~~~KpsRPfRi~T~sdD------------ 169 (603)
T KOG0318|consen 111 ----WDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGH---SRRINSVDFKPSRPFRIATGSDD------------ 169 (603)
T ss_pred ----eCCCCcEEEEEecCccceeEEEEecC--CCccceeecc---ceeEeeeeccCCCceEEEeccCC------------
Confidence 67788889887764 45778875 3322222111 11112233332 33 45555544
Q ss_pred cccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEEC
Q 000473 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1471)
Q Consensus 168 ~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l 247 (1471)
..|.+|+-.=.+.-.+... +...|.++.++ ||+. ..+.++.||.+.++|=
T Consensus 170 ----------------------n~v~ffeGPPFKFk~s~r~---HskFV~~VRys---PDG~--~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 170 ----------------------NTVAFFEGPPFKFKSSFRE---HSKFVNCVRYS---PDGS--RFATAGSDGKIYIYDG 219 (603)
T ss_pred ----------------------CeEEEeeCCCeeeeecccc---cccceeeEEEC---CCCC--eEEEecCCccEEEEcC
Confidence 5555655433333333332 23358899988 4554 3666799999999995
Q ss_pred CCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCe-EEEEEcCCCcceeeeeeecceeEeec
Q 000473 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH-CIFRLLGSGSTIGEICFVDNLFCLEG 326 (1471)
Q Consensus 248 ~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~-~~~~l~d~~~~ige~~~~~~~l~~~~ 326 (1471)
..+ +.+.+- ....+|.+++.+++.+||+..+++++.+. +.+|......++.++....+
T Consensus 220 ktg--------e~vg~l-------~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~------ 278 (603)
T KOG0318|consen 220 KTG--------EKVGEL-------EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST------ 278 (603)
T ss_pred CCc--------cEEEEe-------cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc------
Confidence 544 222221 22446888899999999999999987765 34433333444444422211
Q ss_pred CCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCc-eeeEEE
Q 000473 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGV-KFSIHF 405 (1471)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~-~~~i~f 405 (1471)
-....+|+..- .+ .++.=+-+|....++..... .. .+-..++. --.+.-
T Consensus 279 --v~dqqvG~lWq-kd-----------------~lItVSl~G~in~ln~~d~~-~~---------~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 279 --VEDQQVGCLWQ-KD-----------------HLITVSLSGTINYLNPSDPS-VL---------KVISGHNKSITALTV 328 (603)
T ss_pred --hhceEEEEEEe-CC-----------------eEEEEEcCcEEEEecccCCC-hh---------heecccccceeEEEE
Confidence 01123344333 11 23223334443333322111 00 00011111 112333
Q ss_pred eecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccC
Q 000473 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1471)
Q Consensus 406 ~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~ 485 (1471)
..++.++++.. . +.++.-|..... ..+++..++..-.+--.. ....| .+.+.+.+.
T Consensus 329 ~~d~~~i~Sgs-----y------DG~I~~W~~~~g-----~~~~~~g~~h~nqI~~~~----~~~~~----~~~t~g~Dd 384 (603)
T KOG0318|consen 329 SPDGKTIYSGS-----Y------DGHINSWDSGSG-----TSDRLAGKGHTNQIKGMA----ASESG----ELFTIGWDD 384 (603)
T ss_pred cCCCCEEEeec-----c------CceEEEEecCCc-----cccccccccccceEEEEe----ecCCC----cEEEEecCC
Confidence 45556666543 2 335777763221 111222222100000000 00011 244445556
Q ss_pred ccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE
Q 000473 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1471)
Q Consensus 486 ~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~ 565 (1471)
+++.-+...+.-.......+...+. +++..++.. .++..+. +.|.+ ++. ......
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~QP~---~lav~~d~~----~avv~~~-~~iv~--l~~---------------~~~~~~ 439 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQPK---GLAVLSDGG----TAVVACI-SDIVL--LQD---------------QTKVSS 439 (603)
T ss_pred eEEEEecccCcccccceeecCCCce---eEEEcCCCC----EEEEEec-CcEEE--Eec---------------CCccee
Confidence 6665554432211111111111111 223223322 2333333 33333 110 000111
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE--EEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000473 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1471)
Q Consensus 566 l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l--~~~~~H~~~V~~l~fspd~~~~~~~~~l~ 643 (1471)
.. -.-.+.+++++|+ +..++.|+.|+.|+++.+..+++. .....|.++|++++|+|+ +.+|+
T Consensus 440 ~~-~~y~~s~vAv~~~---------~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd------~~yla 503 (603)
T KOG0318|consen 440 IP-IGYESSAVAVSPD---------GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD------GAYLA 503 (603)
T ss_pred ec-cccccceEEEcCC---------CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC------CcEEE
Confidence 11 1234689999998 899999999999999999865533 456789999999999999 99999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCC
Q 000473 644 SVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASH 721 (1471)
Q Consensus 644 S~s~DgsV~lWdl~t~~~l~~~-~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~ 721 (1471)
++...+.|.+||+.+++..... .-|...|.+++|+|+..++++|+.| -.|.||+++.- +.+.....|...
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~kP~~~i~iknAH~~g 575 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKKPAKHIIIKNAHLGG 575 (603)
T ss_pred EeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccChhhheEeccccccC
Confidence 9999999999999988874333 3499999999999999999999999 89999999863 335556678877
Q ss_pred ceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 722 SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 722 v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
|..+.|-++ ..+++..+|..+|.|++
T Consensus 576 Vn~v~wlde------------------~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 576 VNSVAWLDE------------------STVVSSGQDANIKVWNV 601 (603)
T ss_pred ceeEEEecC------------------ceEEeccCcceeEEecc
Confidence 777666532 23455566999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=260.08 Aligned_cols=604 Identities=13% Similarity=0.121 Sum_probs=347.3
Q ss_pred eeeEecCCCCCC---------ceEEEEEEcCCCCeEEEE--eCCCcEEEEEccCCCCCceeeeEEecccccceeEeeecc
Q 000473 5 SVACIWSGTPPS---------HRVTATSALTQPPTLYTG--GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICY 73 (1471)
Q Consensus 5 ~~~~lw~~~~p~---------h~Vtava~SpDg~~LaTG--s~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~ 73 (1471)
=|++|+...-.+ -.+||+|||++|+|+||| |....+++|+++. ...++.|..|+..|+|++
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----h~vVAEfvdHKY~vtcva--- 129 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----HGVVAEFVDHKYNVTCVA--- 129 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----ccchhhhhhccccceeee---
Confidence 367777665443 259999999999999999 4778899999985 346778899999999999
Q ss_pred ccccccCcccccccccccccccccccCCCCEEEEEeC--CCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeE-E
Q 000473 74 PAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT--DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRY-V 150 (1471)
Q Consensus 74 ~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~LaSas~--DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~l-l 150 (1471)
|+|.++|++|.+. |-.|.+||+.........+. .+...+..|++++-| +
T Consensus 130 ------------------------Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnki----ss~Vsav~fsEdgSYfv 181 (1080)
T KOG1408|consen 130 ------------------------FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKI----SSVVSAVAFSEDGSYFV 181 (1080)
T ss_pred ------------------------ecCCCcEEEeeccccceEEEhhhhhhccccccccc----ceeEEEEEEccCCceee
Confidence 7899999999664 77888999875544444333 234566788999865 4
Q ss_pred EEcceecccCCcccccccc----cccccccccccCCCCCCCCCceEEE-----EeCcceEEEEEeecCccccCC------
Q 000473 151 CIGCCFIDTNQLSDHHSFE----SVEGDLVSEDKEVPMKNPPKCTLVI-----VDTYGLTIVQTVFHGNLSIGP------ 215 (1471)
Q Consensus 151 ~~G~~~id~~~~~~~h~~~----~i~~~~~~~d~~~~~~~~~~~~I~v-----~D~~t~~~l~tl~s~~~s~~~------ 215 (1471)
++|...+..|.+.....++ ..-....+-+.+........|.+-+ |.......+-.+.+.++--.|
T Consensus 182 T~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTT 261 (1080)
T KOG1408|consen 182 TSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTT 261 (1080)
T ss_pred eeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcc
Confidence 5677667767665554331 1111111112111111111121111 111111111222221211122
Q ss_pred -eEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCccccc-----C---CCcccCCCcccceeccCCcccCceEEEE
Q 000473 216 -WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREE-----G---NGLCKSSSQLDMAILQNGVVEGGHLVSV 286 (1471)
Q Consensus 216 -i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~~~-----~---~~l~~~e~~i~~v~~~~~~~~~~~~vs~ 286 (1471)
.++++++. ..+++|.++|+|++|+.++..-....+ + ..+.+.+ ++.. .-.++.+.+-.++.|
T Consensus 262 nAnCIcVs~-------r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~-~~~s-~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 262 NANCICVSS-------RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE-PKNS-ESSPAIFPDAIACQF 332 (1080)
T ss_pred ccceeeeec-------ceEEEeeccceeeecCcchhhhccccccccccccchhhccccc-cccc-ccCcccCCceeEEEe
Confidence 25667661 457888999999999977642111111 0 1111111 1100 112223333456667
Q ss_pred ecCCcEEEEEeCCeEEEEEcCCCc--ceeee-eeecceeEeecCCCCceeeeeEeecchhhhhhcccccccccccceEEE
Q 000473 287 ATCGNIIALVLKDHCIFRLLGSGS--TIGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAV 363 (1471)
Q Consensus 287 s~~g~~l~~~~~~~~~~~l~d~~~--~ige~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 363 (1471)
.+....+.++-.++-++ +||..+ ..|+. .+..+-.|.=. ...+..+ ++.....|-. .+-|..
T Consensus 333 det~~klscVYndhSlY-vWDvrD~~kvgk~~s~lyHS~ciW~---------Ve~~p~n----v~~~~~aclp-~~cF~T 397 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLY-VWDVRDVNKVGKCSSMLYHSACIWD---------VENLPCN----VHSPTAACLP-RGCFTT 397 (1080)
T ss_pred cCCCceEEEEEcCceEE-EEeccccccccceeeeeeccceeee---------ecccccc----ccCcccccCC-ccceeE
Confidence 76655555554544332 366555 12222 11111122100 0000000 0000000000 124566
Q ss_pred EcCCCcEEEEEeecC--CCCCcccCee-eecCccCCCCceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEcccc
Q 000473 364 WDNRGSAIVYAISYM--NEKFDYEPHF-EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK 440 (1471)
Q Consensus 364 w~~~G~~~vy~l~~~--~~~~~~~~~~-~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~ 440 (1471)
.+.||.+++|.+.+. ++.+++..+. +..++++..+. -+++.-.....++......+.|.+-+-.+
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~---------~q~~~d~~~~~fdka~~s~~d~r~G~R~~--- 465 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST---------QQIMHDASAGIFDKALVSTCDSRFGFRAL--- 465 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCc---------hhhhhhccCCcccccchhhcCcccceEEE---
Confidence 666666666666542 2222221111 11111111111 00010000000111111111111111000
Q ss_pred CCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccccccccCCCCCCCccccccccCccEEEEEeecc
Q 000473 441 HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISE 520 (1471)
Q Consensus 441 ~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~ 520 (1471)
.+.++|. .++..-..+.++++++.+- .....+..|...|.|+.|...
T Consensus 466 --------------------------~vSp~gq---hLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 466 --------------------------AVSPDGQ---HLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred --------------------------EECCCcc---eecccCccCceEEEEehhh----hhhhheecccceeEEEeecCc
Confidence 1223441 2444455678888887653 334456889999999885432
Q ss_pred ccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC
Q 000473 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1471)
Q Consensus 521 ~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D 600 (1471)
.. .-..|++|+.|.-|.|++.. ..-.+++++.+|...|+++.|.-. + .+..++|++.|
T Consensus 513 ~~-~~kLLASasrdRlIHV~Dv~--------------rny~l~qtld~HSssITsvKFa~~-----g--ln~~MiscGAD 570 (1080)
T KOG1408|consen 513 VL-TNKLLASASRDRLIHVYDVK--------------RNYDLVQTLDGHSSSITSVKFACN-----G--LNRKMISCGAD 570 (1080)
T ss_pred hh-hhHhhhhccCCceEEEEecc--------------cccchhhhhcccccceeEEEEeec-----C--CceEEEeccCc
Confidence 21 11278999999999994422 122457889999999999999764 1 14689999999
Q ss_pred CcEEEEECCCCceEEEEecc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC---CCCCc
Q 000473 601 CSIRIWDLGSGNLITVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG---HPNYP 672 (1471)
Q Consensus 601 gtI~lWDl~tg~~l~~~~~H-----~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g---h~~~V 672 (1471)
+.|.+--.....-...|..| ...+..+++.|. ..++++++.|+.|+|+|+++++..+.|.| |.+..
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 98764333211111222222 246889999998 88999999999999999999999999975 66778
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccce
Q 000473 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1471)
Q Consensus 673 ~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~ 752 (1471)
..|...|.|.||++.|.| .++.++|..+|+++..+.||...|+.+.|.+.- .++.
T Consensus 645 IKv~lDPSgiY~atScsd--------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----------------kHlI 699 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSD--------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----------------KHLI 699 (1080)
T ss_pred EEEEECCCccEEEEeecC--------CceEEEEeccchhhhhhcCcchheeeeeecccc-----------------hhhe
Confidence 899999999999999999 999999999999999999999999998887421 2345
Q ss_pred eeccCCceEeeccc
Q 000473 753 PIHEDGTFRQSQIQ 766 (1471)
Q Consensus 753 ~~~~D~tir~w~l~ 766 (1471)
.++.|+.|-+|.+.
T Consensus 700 SvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLP 713 (1080)
T ss_pred eecCCceEEEEECc
Confidence 66779999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=240.86 Aligned_cols=405 Identities=14% Similarity=0.154 Sum_probs=265.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEec---ccccceeEeeeccccccccCccccccccccccccc
Q 000473 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC---GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1471)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~---GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1471)
|.|+.|+|||..+||.+.||+|.++|-.+ .+.+..|. +|++.|-+|+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGkt-----ge~vg~l~~~~aHkGsIfals------------------------- 242 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT-----GEKVGELEDSDAHKGSIFALS------------------------- 242 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCC-----ccEEEEecCCCCccccEEEEE-------------------------
Confidence 99999999999999999999999999875 33555666 8999999999
Q ss_pred ccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCcccccccccccccc
Q 000473 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1471)
Q Consensus 96 ~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~ 175 (1471)
++||++.++|+|.|.+++|||+.+++|+....+...++...--+-. ..+.++++.-
T Consensus 243 --WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItVSl--------------------- 298 (603)
T KOG0318|consen 243 --WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITVSL--------------------- 298 (603)
T ss_pred --ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEEEc---------------------
Confidence 7999999999999999999999999999887765221111111111 1344444433
Q ss_pred cccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCccc
Q 000473 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1471)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~ 255 (1471)
++.|-.+++....+++++.. +... |+++++++ ++ ..++.|+.||.|.-|++..+.
T Consensus 299 -------------~G~in~ln~~d~~~~~~i~G-HnK~--ITaLtv~~---d~--~~i~SgsyDG~I~~W~~~~g~---- 353 (603)
T KOG0318|consen 299 -------------SGTINYLNPSDPSVLKVISG-HNKS--ITALTVSP---DG--KTIYSGSYDGHINSWDSGSGT---- 353 (603)
T ss_pred -------------CcEEEEecccCCChhheecc-cccc--eeEEEEcC---CC--CEEEeeccCceEEEEecCCcc----
Confidence 38899999999887777665 6666 99999884 44 458889999999999998773
Q ss_pred ccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeecCCCCceeee
Q 000473 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIG 335 (1471)
Q Consensus 256 ~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~~~ 335 (1471)
..++.+ ..|...+..++.+..+.++-+.-++... ..+.+. +
T Consensus 354 --~~~~~g-----------~~h~nqI~~~~~~~~~~~~t~g~Dd~l~--~~~~~~------------------------~ 394 (603)
T KOG0318|consen 354 --SDRLAG-----------KGHTNQIKGMAASESGELFTIGWDDTLR--VISLKD------------------------N 394 (603)
T ss_pred --cccccc-----------ccccceEEEEeecCCCcEEEEecCCeEE--EEeccc------------------------C
Confidence 111111 1133333444433334443333333211 111111 0
Q ss_pred eEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEeecceeeEEe
Q 000473 336 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 415 (1471)
Q Consensus 336 g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v 415 (1471)
++.. . . +.++..+ |.. ++-..++..++
T Consensus 395 ~~t~-~------------------~-----------~~~lg~Q------------P~~---------lav~~d~~~av-- 421 (603)
T KOG0318|consen 395 GYTK-S------------------E-----------VVKLGSQ------------PKG---------LAVLSDGGTAV-- 421 (603)
T ss_pred cccc-c------------------c-----------eeecCCC------------cee---------EEEcCCCCEEE--
Confidence 0000 0 0 0000000 000 00000000000
Q ss_pred eeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccccccccCC
Q 000473 416 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 495 (1471)
Q Consensus 416 ~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~ 495 (1471)
+. +.+. -.+.++. .+ . ..
T Consensus 422 ----------------v~----~~~~-------iv~l~~~---------------~~-----~---------------~~ 439 (603)
T KOG0318|consen 422 ----------------VA----CISD-------IVLLQDQ---------------TK-----V---------------SS 439 (603)
T ss_pred ----------------EE----ecCc-------EEEEecC---------------Cc-----c---------------ee
Confidence 00 0000 0111110 00 0 00
Q ss_pred CCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEE
Q 000473 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1471)
Q Consensus 496 ~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~ 575 (1471)
.+ -.-..+++++.++.. .++.|++||.+.|+... + ........+..|.++|++
T Consensus 440 ~~----------~~y~~s~vAv~~~~~----~vaVGG~Dgkvhvysl~---g----------~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 440 IP----------IGYESSAVAVSPDGS----EVAVGGQDGKVHVYSLS---G----------DELKEEAKLLEHRAAITD 492 (603)
T ss_pred ec----------cccccceEEEcCCCC----EEEEecccceEEEEEec---C----------CcccceeeeecccCCceE
Confidence 00 012244566555554 79999999999996543 1 111344567789999999
Q ss_pred EEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000473 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1471)
Q Consensus 576 la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l-~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lW 654 (1471)
++|+|| +.+|++|...+.|.+||..+.+.. ..+.-|+..|.+++|+|+ ...+|||+-|-.|.+|
T Consensus 493 vaySpd---------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~------n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 493 VAYSPD---------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN------NKLVATGSLDTNVIIY 557 (603)
T ss_pred EEECCC---------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC------ceEEEeccccceEEEE
Confidence 999998 899999999999999999988764 344459999999999999 7899999999999999
Q ss_pred ECCCCc-EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 655 SLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 655 dl~t~~-~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
+++... .+.....|...|+.+.|- +...+++.+.| ..|++|++.
T Consensus 558 sv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~D--------a~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQD--------ANIKVWNVT 602 (603)
T ss_pred EccChhhheEeccccccCceeEEEe-cCceEEeccCc--------ceeEEeccc
Confidence 997643 355556798899999996 45688999998 899999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=249.90 Aligned_cols=535 Identities=16% Similarity=0.160 Sum_probs=330.1
Q ss_pred eeEecCCCCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCce-ee-eEEecccccceeEeeeccccccccCccc
Q 000473 6 VACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEI-KP-VAMLCGHSAPIADLSICYPAMVSRDGKA 83 (1471)
Q Consensus 6 ~~~lw~~~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~-~~-~~~L~GH~~~Vt~La~c~~~~~s~dg~~ 83 (1471)
+.++|.... ..|.-+. |=|.+|+++..++.+.+|+... ..+. .. ...+.+...-|++|. +|.
T Consensus 106 i~~~~~~~~--a~v~~l~--~fGe~lia~d~~~~l~vw~~s~--~~~e~~l~~~~~~~~~~~Ital~--HP~-------- 169 (910)
T KOG1539|consen 106 IRHTTLLHG--AKVHLLL--PFGEHLIAVDISNILFVWKTSS--IQEELYLQSTFLKVEGDFITALL--HPS-------- 169 (910)
T ss_pred EEEEecccc--ceEEEEe--eecceEEEEEccCcEEEEEecc--ccccccccceeeeccCCceeeEe--cch--------
Confidence 344444433 4454443 3478888888999999999873 1111 11 111222222288885 565
Q ss_pred ccccccccccccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcC--CCCeEEEEcceecccCC
Q 000473 84 EHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP--SNPRYVCIGCCFIDTNQ 161 (1471)
Q Consensus 84 ~~~~~~~~~~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s--~~~~ll~~G~~~id~~~ 161 (1471)
.|.++ ++-|+.+|.|.+||+.+|+.+...+.. +..|.... |--.++++|.-
T Consensus 170 -TYLNK---------------IvvGs~~G~lql~Nvrt~K~v~~f~~~-----~s~IT~ieqsPaLDVVaiG~~------ 222 (910)
T KOG1539|consen 170 -TYLNK---------------IVVGSSQGRLQLWNVRTGKVVYTFQEF-----FSRITAIEQSPALDVVAIGLE------ 222 (910)
T ss_pred -hheee---------------EEEeecCCcEEEEEeccCcEEEEeccc-----ccceeEeccCCcceEEEEecc------
Confidence 45555 889999999999999999999886543 24444444 44567888875
Q ss_pred cccccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCc
Q 000473 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1471)
Q Consensus 162 ~~~~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~ 241 (1471)
+|+|.+++...++++.++.+ .+ +.|+.++|.. ||+ .-+++|+..|.
T Consensus 223 ---------------------------~G~ViifNlK~dkil~sFk~-d~--g~VtslSFrt---DG~-p~las~~~~G~ 268 (910)
T KOG1539|consen 223 ---------------------------NGTVIIFNLKFDKILMSFKQ-DW--GRVTSLSFRT---DGN-PLLASGRSNGD 268 (910)
T ss_pred ---------------------------CceEEEEEcccCcEEEEEEc-cc--cceeEEEecc---CCC-eeEEeccCCce
Confidence 59999999999999999987 33 3499999984 444 23344477799
Q ss_pred EEEEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeC-CeEEEEEcCCCcceeeeeeecc
Q 000473 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK-DHCIFRLLGSGSTIGEICFVDN 320 (1471)
Q Consensus 242 V~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~-~~~~~~l~d~~~~ige~~~~~~ 320 (1471)
+-+||+++.+. +. ...+.|.+++....|.+..-++.+... ++-.+|.+|+++ |. | +
T Consensus 269 m~~wDLe~kkl---------------~~--v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d--g~---p-R 325 (910)
T KOG1539|consen 269 MAFWDLEKKKL---------------IN--VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD--GV---P-R 325 (910)
T ss_pred EEEEEcCCCee---------------ee--eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC--Cc---c-h
Confidence 99999998742 11 113446777777888888666666544 455677888777 21 2 3
Q ss_pred eeEeecCCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecC--CCCCcccCeeeecCccCCCC
Q 000473 321 LFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYM--NEKFDYEPHFEIPAVSYPSG 398 (1471)
Q Consensus 321 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~--~~~~~~~~~~~ip~v~~~~~ 398 (1471)
+|-+..+....+..-.++.+.+ ..+.-...|.+.+.|.+.-. +..... .+++.....
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g----------------~~ilsa~~Drt~r~fs~~~e~~~~~l~~---~~~~~~~kk-- 384 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQG----------------HFILSAKQDRTLRSFSVISESQSQELGQ---LHNKKRAKK-- 384 (910)
T ss_pred heeeccCCCCCchheeeeccCc----------------EEEEecccCcchhhhhhhHHHHhHhhcc---ccccccccc--
Confidence 3433222211111111111110 01111122222222221100 000000 000000000
Q ss_pred ceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCccccee
Q 000473 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1471)
Q Consensus 399 ~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l 478 (1471)
..+ ........+|++. + -..+.....|..- +
T Consensus 385 --------------~~~-----~~~~~~k~p~i~~-f---------------a~~~~RE~~W~Nv--------------~ 415 (910)
T KOG1539|consen 385 --------------VNV-----FSTEKLKLPPIVE-F---------------AFENAREKEWDNV--------------I 415 (910)
T ss_pred --------------ccc-----cchhhhcCCccee-e---------------ecccchhhhhcce--------------e
Confidence 000 0001111112211 1 1111122344221 2
Q ss_pred ecccccCccccccccCCCCCCCcc---ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGR---DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~---~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
+.......++.|+..+... |.-. ..++.....++|++...+.. ..+.|+..|.|.+++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~-G~~~L~~~~~~~~~~~~~av~vs~CGN----F~~IG~S~G~Id~fN-------------- 476 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTS-GRHVLDPKRFKKDDINATAVCVSFCGN----FVFIGYSKGTIDRFN-------------- 476 (910)
T ss_pred EEecCcceEEEEeccCccc-ccEEecCccccccCcceEEEEEeccCc----eEEEeccCCeEEEEE--------------
Confidence 2333344566777766433 2110 11222346788888777776 488999999999944
Q ss_pred ccCCcceEEEE---ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCC
Q 000473 556 KVNSHVSRQYF---LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1471)
Q Consensus 556 d~~s~~~~~~l---~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd 632 (1471)
.++|.....+ ..|.++|+.++.... ++.++|++.||-+++||...+.++..+..- .++..+.++..
T Consensus 477 -mQSGi~r~sf~~~~ah~~~V~gla~D~~---------n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~ 545 (910)
T KOG1539|consen 477 -MQSGIHRKSFGDSPAHKGEVTGLAVDGT---------NRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRV 545 (910)
T ss_pred -cccCeeecccccCccccCceeEEEecCC---------CceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeeh
Confidence 4466666666 589999999998765 789999999999999999988887777543 35677777766
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 633 ~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
...++.+..|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.| ++|++||+.||.++
T Consensus 546 ------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 546 ------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLPTGTLI 611 (910)
T ss_pred ------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEeccCccee
Confidence 7799999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccC-CceEeeccccccccc
Q 000473 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHED-GTFRQSQIQNDERGV 772 (1471)
Q Consensus 713 ~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D-~tir~w~l~~~~~~~ 772 (1471)
..+.-.. ..+.+.|. ++|++.+..+. | .-+..|.-+...+..
T Consensus 612 D~~~vd~-~~~sls~S------------PngD~LAT~Hv-----d~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 612 DGLLVDS-PCTSLSFS------------PNGDFLATVHV-----DQNGIYLWSNKSLFKSV 654 (910)
T ss_pred eeEecCC-cceeeEEC------------CCCCEEEEEEe-----cCceEEEEEchhHheec
Confidence 8776443 33444444 34455444333 5 357788644444333
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=265.45 Aligned_cols=210 Identities=17% Similarity=0.230 Sum_probs=185.3
Q ss_pred ccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000473 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1471)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~sp 580 (1471)
...++.+|.++|....+.|+.. .|+++++|+++++|. ..+..+.-.++||..+|+++.|+|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r----fLlScSED~svRLWs---------------l~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR----FLLSCSEDSSVRLWS---------------LDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred eeEEeecCCCceeeeeeccccc----ceeeccCCcceeeee---------------cccceeEEEecCCCcceeeEEecC
Confidence 3445789999999988555554 699999999999944 345567788899999999999999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~ 660 (1471)
- |.+++|||.|++.++|....-.+++.|.+|-+.|.|+.|+|+ .+++++||.|++||+||+.+|.
T Consensus 504 ~---------GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 504 R---------GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred C---------ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCCc
Confidence 6 899999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceE
Q 000473 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1471)
Q Consensus 661 ~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v 740 (1471)
.++.|.||.++|.+++|+|+|+||++|+.| |.|.+||+.+|.++..+.||++.+..+.|+.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed--------~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~----------- 629 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDED--------GLIKIWDLANGSLVKQLKGHTGTIYSLSFSR----------- 629 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccC--------CcEEEEEcCCCcchhhhhcccCceeEEEEec-----------
Confidence 999999999999999999999999999999 9999999999999999999999888898883
Q ss_pred EcCCccccccceeeccCCceEeecccccc
Q 000473 741 LNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 741 ~~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
.|+..+++. .|.++|.|++....
T Consensus 630 -dg~vLasgg-----~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 630 -DGNVLASGG-----ADNSVRLWDLTKVI 652 (707)
T ss_pred -CCCEEEecC-----CCCeEEEEEchhhc
Confidence 223333333 39999999985433
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=237.50 Aligned_cols=151 Identities=21% Similarity=0.312 Sum_probs=133.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc------cCcCCCEEEEEECC
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK------GWSFNEVLVSGSMD 600 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~------~~~~~~~L~SGs~D 600 (1471)
.+++++.|.++++|. ..++.+...+.+|.-+|.|++|.|....++ +...++++++||.|
T Consensus 249 i~As~s~dqtl~vW~---------------~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWV---------------VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEecCCCceEEEEE---------------eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 467778888999833 445677788999999999999988753222 11235799999999
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000473 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1471)
Q Consensus 601 gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spd 680 (1471)
++|++||+.+|.++.++.+|...|..++|+|. |++|+|+.+|+++++||+++++|...++.|+..|+++.|+.+
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 681 RGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 681 g~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
..|+++|+-| .++++|.-
T Consensus 388 ~p~VvTGsVd--------qt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVD--------QTVKVWEC 405 (406)
T ss_pred CceEEecccc--------ceeeeeec
Confidence 9999999999 99999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=233.11 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=142.2
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
.+|.+.|.++.+.+... .|++++.|++++| |. .....+...|.+|+..|..+.|+|+....
T Consensus 356 ~GH~g~V~alk~n~tg~----LLaS~SdD~Tlki--Ws-------------~~~~~~~~~l~~Hskei~t~~wsp~g~v~ 416 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGS----LLASCSDDGTLKI--WS-------------MGQSNSVHDLQAHSKEIYTIKWSPTGPVT 416 (524)
T ss_pred ecccCceEEEEECCCCc----eEEEecCCCeeEe--ee-------------cCCCcchhhhhhhccceeeEeecCCCCcc
Confidence 45667777777444443 7999999999999 33 23345677889999999999999974333
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~ 665 (1471)
.....+..+++++.|++|++||+..|.++++|..|+.+|.+|+|+|+ |.++++|+.||.|.+|+.++++.++.+
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~------g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN------GRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC------CcEEEecCCCCeeEeccccchheeEee
Confidence 23445779999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 666 ~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
.+. +.|..++|+.+|++|..+-.| +.+.+-|++
T Consensus 491 ~~~-~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldlr 523 (524)
T KOG0273|consen 491 QGT-GGIFELCWNAAGDKLGACASD--------GSVCVLDLR 523 (524)
T ss_pred cCC-CeEEEEEEcCCCCEEEEEecC--------CCceEEEec
Confidence 764 459999999999999887777 999998875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=231.33 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=144.9
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEE
Q 000473 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1471)
Q Consensus 528 lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWD 607 (1471)
+++.+.||.|+|+..+ ...++.++.||++.|.++.|.|. +.+|+|+|.|+|+++|.
T Consensus 332 F~ts~td~~i~V~kv~---------------~~~P~~t~~GH~g~V~alk~n~t---------g~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVG---------------EDRPVKTFIGHHGEVNALKWNPT---------GSLLASCSDDGTLKIWS 387 (524)
T ss_pred EeecCCCceEEEEEec---------------CCCcceeeecccCceEEEEECCC---------CceEEEecCCCeeEeee
Confidence 5566678889986544 23678899999999999999997 89999999999999999
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCC--CC-CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000473 608 LGSGNLITVMHHHVAPVRQIILSPPQTE--HP-WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1471)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~fspd~~~--~~-~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L 684 (1471)
.....+.+.|.+|...|..+.|+|..+. .| .+..+++++.|++|++||+..+.+++.|..|..+|++++|+|+|+|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 9999999999999999999999998533 33 35589999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 685 ~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~ 720 (1471)
++|+.| |.|.+|++++|++.+.+.+...
T Consensus 468 AsGs~d--------g~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 468 ASGSLD--------GCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EecCCC--------CeeEeccccchheeEeecCCCe
Confidence 999999 9999999999999999988764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=217.70 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=129.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++|+.|+..++ ||+.++.++++|.||...|+++.|+|+ +.-+++||.|++.++|
T Consensus 201 tFvSg~cD~~akl---------------WD~R~~~c~qtF~ghesDINsv~ffP~---------G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 201 TFVSGGCDKSAKL---------------WDVRSGQCVQTFEGHESDINSVRFFPS---------GDAFATGSDDATCRLY 256 (343)
T ss_pred eEEecccccceee---------------eeccCcceeEeecccccccceEEEccC---------CCeeeecCCCceeEEE
Confidence 5788888998888 456778899999999999999999997 8999999999999999
Q ss_pred ECCCCceEEEEecc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000473 607 DLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H--~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L 684 (1471)
|++..+.+..|... ..+|++++|+-. |+++.+|..|.++.+||.-.++.+..+.||..+|.++..+|||--+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 99999988888642 358999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEE
Q 000473 685 ACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 685 ~sgs~D~sg~~D~~gtV~VWD 705 (1471)
++|+.| .+++||.
T Consensus 331 ~TgSWD--------s~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWD--------STLRIWA 343 (343)
T ss_pred Eecchh--------HheeecC
Confidence 999988 8999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=210.95 Aligned_cols=161 Identities=17% Similarity=0.324 Sum_probs=136.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
-|++|..+|.|+| ||+ ....+.+.+ ..-.-.|.++.+.|| +..++.+..-|+..+
T Consensus 138 eLis~dqsg~irv--WDl-------------~~~~c~~~liPe~~~~i~sl~v~~d---------gsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 138 ELISGDQSGNIRV--WDL-------------GENSCTHELIPEDDTSIQSLTVMPD---------GSMLAAANNKGNCYV 193 (311)
T ss_pred eEEeecCCCcEEE--EEc-------------cCCccccccCCCCCcceeeEEEcCC---------CcEEEEecCCccEEE
Confidence 4777778888888 442 112222222 223357889999998 899999999999999
Q ss_pred EECCCCc------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEc
Q 000473 606 WDLGSGN------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 606 WDl~tg~------~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~s 678 (1471)
|++-++. ++++|+.|.+-+..+.++|+ +++|+++|.|++|+||+.++. +....+.+|...++..+||
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 9997643 66889999999999999999 899999999999999999988 7778899999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~ 725 (1471)
.||.||++|+.| +.+++||+..|+.++...||....++.
T Consensus 268 ~dg~YlvTassd--------~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 268 ADGEYLVTASSD--------HTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred cCccEEEecCCC--------CceeecccccCceeeecCCcccccEEE
Confidence 999999999998 999999999999999999998766654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=251.52 Aligned_cols=224 Identities=23% Similarity=0.321 Sum_probs=188.9
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccC-----------CCCCCccccCCcceE
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERH-----------NSPGASLKVNSHVSR 563 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~-----l~~~-----------d~~~~~~d~~s~~~~ 563 (1471)
-+.+++.--...++|..+..+.. .+|+|+.|..|++|.+.. +... |-..+.-|..+....
T Consensus 369 ic~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 44555555556788887555555 899999999999976651 1111 001122344445566
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000473 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1471)
Q Consensus 564 ~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~ 643 (1471)
+++.||+++|....|+|+ .++|+|+|.|++||+|++.+..++-.+++|..||+.+.|+|. |.+||
T Consensus 445 ~~L~GH~GPVyg~sFsPd---------~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFa 509 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPD---------RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFA 509 (707)
T ss_pred EEeecCCCceeeeeeccc---------ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEE
Confidence 779999999999999998 899999999999999999999999999999999999999998 99999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCce
Q 000473 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1471)
Q Consensus 644 S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~ 723 (1471)
|+|.|++-++|......+++.|.||.+.|.|+.|+|+..|+++|+.| .+||+||+.+|..+|.+.||.+.|+
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD--------~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD--------RTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC--------ceEEEEEcCCCcEEEEecCCCCceE
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred eeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 724 ~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
.+.|++ +|.+.+++. +|+.|+.|++.+
T Consensus 582 al~~Sp------------~Gr~LaSg~-----ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 582 ALAFSP------------CGRYLASGD-----EDGLIKIWDLAN 608 (707)
T ss_pred EEEEcC------------CCceEeecc-----cCCcEEEEEcCC
Confidence 998883 344544443 499999999844
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=223.06 Aligned_cols=522 Identities=14% Similarity=0.151 Sum_probs=313.6
Q ss_pred CCceEEEEEEcCCCC---eEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccc
Q 000473 15 PSHRVTATSALTQPP---TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1471)
Q Consensus 15 p~h~Vtava~SpDg~---~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1471)
+..+|+|+.+.|+.+ ++++|+.||+|++|.+.. .....+..+.||...+.|+.-
T Consensus 53 H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~---~~~~~i~~~~g~~~~~~cv~a-------------------- 109 (764)
T KOG1063|consen 53 HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD---EYLIKIYTIQGHCKECVCVVA-------------------- 109 (764)
T ss_pred CccceEEEEEcccccccceEEEccCCCcEEEEEEee---hheEEEEeecCcceeEEEEEe--------------------
Confidence 456799999999876 899999999999999983 334556677888988888861
Q ss_pred ccccccccCCCCEEEE-EeCCCeEEEEEcCCCe--EEEeeeCCCCCCCCcEEEEcC-CCCeEEEEcceecccCCcccccc
Q 000473 92 SNVMGKSSLDNGALIS-ACTDGVLCVWSRSSGH--CRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHS 167 (1471)
Q Consensus 92 ~~~~~~~s~d~~~LaS-as~DG~I~VWdv~~G~--ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~~~id~~~~~~~h~ 167 (1471)
...+.+ .+.|+++.+||....+ |.+........-.|..+.+.+ ++.-++++|..
T Consensus 110 ----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs------------ 167 (764)
T KOG1063|consen 110 ----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS------------ 167 (764)
T ss_pred ----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc------------
Confidence 111222 3789999999996555 333322211112344444555 33456778875
Q ss_pred cccccccccccccCCCCCCCCCceEEEEeCcce--EEEEEeecCccccCCeEEEEEeeecCCCCceeEEEE--eCCCcEE
Q 000473 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGL--TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV--DSVGRLQ 243 (1471)
Q Consensus 168 ~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~--~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llva--s~dG~V~ 243 (1471)
+..|.++--.+. ..+..+.. +.|||..++|.. +.+ ++++++ +.|..||
T Consensus 168 ---------------------~~~v~~~s~~~d~f~~v~el~G---H~DWIrsl~f~~--~~~--~~~~laS~SQD~yIR 219 (764)
T KOG1063|consen 168 ---------------------KFVVDLYSSSADSFARVAELEG---HTDWIRSLAFAR--LGG--DDLLLASSSQDRYIR 219 (764)
T ss_pred ---------------------ceEEEEeccCCcceeEEEEeec---cchhhhhhhhhc--cCC--CcEEEEecCCceEEE
Confidence 233434333322 22333333 579999999873 222 234444 9999999
Q ss_pred EEECCCCCCccc---ccCCCcccCC--Cc----cc----ceeccCCcccCceEEEEecCCcEEEEE-eCCeEEEEEcCCC
Q 000473 244 LVPISKESHLDR---EEGNGLCKSS--SQ----LD----MAILQNGVVEGGHLVSVATCGNIIALV-LKDHCIFRLLGSG 309 (1471)
Q Consensus 244 vW~l~~~~~~~~---~~~~~l~~~e--~~----i~----~v~~~~~~~~~~~~vs~s~~g~~l~~~-~~~~~~~~l~d~~ 309 (1471)
+|.+.-....+. +....++.+. .. +. .=....+|..-+.++-..|.+..|++. .++..++|-.+..
T Consensus 220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN 299 (764)
T ss_pred EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc
Confidence 999875521110 0000111111 00 10 001123566778888888888555554 4455677544444
Q ss_pred cceeeeeeecceeEe-ecCCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCee
Q 000473 310 STIGEICFVDNLFCL-EGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHF 388 (1471)
Q Consensus 310 ~~ige~~~~~~~l~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~ 388 (1471)
+-+ +. ...++ +.+.....+.++.+...+ +-++-|+..|..++|+ . .+ ...|
T Consensus 300 tGi----Wv-~~vRlGe~gg~a~GF~g~lw~~n~----------------~~ii~~g~~Gg~hlWk-t-~d-----~~~w 351 (764)
T KOG1063|consen 300 TGI----WV-DVVRLGEVGGSAGGFWGGLWSPNS----------------NVIIAHGRTGGFHLWK-T-KD-----KTFW 351 (764)
T ss_pred cce----EE-EEEEeecccccccceeeEEEcCCC----------------CEEEEecccCcEEEEe-c-cC-----ccce
Confidence 311 22 11222 222112235566665332 2456677788888887 1 11 1223
Q ss_pred -eecCccCCCCceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccc
Q 000473 389 -EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFL 467 (1471)
Q Consensus 389 -~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~ 467 (1471)
..|.+.+.-++.-.+.+.+.|.||.++.. +.+++++.-- ++ ...
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----------DQTTRlFa~w------g~----------q~~-------- 396 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----------DQTTRLFARW------GR----------QQE-------- 396 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEecc-----------ccceeeeccc------cc----------ccc--------
Confidence 22233333344456677777777777652 2234444211 00 000
Q ss_pred cCCCCcccceeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc---
Q 000473 468 DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL--- 544 (1471)
Q Consensus 468 ~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~--- 544 (1471)
|.- ....+-|+-.++|+.++.... ++++|.+..-++++....
T Consensus 397 ----------------------wHE---------iaRPQiHGyDl~c~~~vn~~~----~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 397 ----------------------WHE---------IARPQIHGYDLTCLSFVNEDL----QFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ----------------------eee---------ecccccccccceeeehccCCc----eeeecccceeeeeecCcHHHH
Confidence 111 111234555566665544321 456666555566643210
Q ss_pred -----ccc-----CC-----------------------CCCCc------------------cccC-------CcceEEEE
Q 000473 545 -----FER-----HN-----------------------SPGAS------------------LKVN-------SHVSRQYF 566 (1471)
Q Consensus 545 -----l~~-----~d-----------------------~~~~~------------------~d~~-------s~~~~~~l 566 (1471)
+.+ .+ ..+.. +..+ --..++.|
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 000 00 00000 0000 00123567
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCC-----cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCE
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-----SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 567 ~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dg-----tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~ 641 (1471)
+||...|+|++.+|+ +++++|+.... .|++|+..+......+.+|.-.|+.++|+|| +++
T Consensus 522 YGHGyEv~~l~~s~~---------gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd------g~~ 586 (764)
T KOG1063|consen 522 YGHGYEVYALAISPT---------GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD------GRY 586 (764)
T ss_pred ccCceeEEEEEecCC---------CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC------CcE
Confidence 899999999999997 89999987553 6899999999988999999999999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCcE----EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEE--
Q 000473 642 FLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG--ARER-- 713 (1471)
Q Consensus 642 l~S~s~DgsV~lWdl~t~~~----l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg--~~~~-- 713 (1471)
|+++|.|+++.||....... ......|..-|++..|+|++.+++|++.| .+|+||..... +.+.
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD--------K~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD--------KKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC--------ceEEEEeccCchhhhhhhh
Confidence 99999999999998854321 12256799999999999999999999999 99999998876 3332
Q ss_pred EEeCCCCCceeeeeeec
Q 000473 714 VLRGTASHSMFDHFCKG 730 (1471)
Q Consensus 714 ~l~gH~~~v~~~~~~~~ 730 (1471)
....+...|+.+.+++-
T Consensus 659 a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred chhccCCceeeEEeecc
Confidence 23457778888888853
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=214.31 Aligned_cols=140 Identities=20% Similarity=0.336 Sum_probs=120.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEE
Q 000473 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1471)
Q Consensus 528 lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWD 607 (1471)
+++|.-|+.|++ |+ ...+....++.||.+.|+.+..+|+ +.++.|-++|.++++||
T Consensus 189 v~sggIdn~ikv--Wd-------------~r~~d~~~~lsGh~DtIt~lsls~~---------gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 189 VISGGIDNDIKV--WD-------------LRKNDGLYTLSGHADTITGLSLSRY---------GSFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeccccCceee--ec-------------cccCcceEEeecccCceeeEEeccC---------CCccccccccceEEEEE
Confidence 556777889998 44 3344667899999999999999997 89999999999999999
Q ss_pred CCC----CceEEEEeccCC----CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000473 608 LGS----GNLITVMHHHVA----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 608 l~t----g~~l~~~~~H~~----~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~sp 679 (1471)
++. .+++..|.+|.- -.....|+|+ +..+-.|+.|+.|.+||....+.+..++||.+.|.++.|+|
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 973 346888887643 3456788998 88999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 680 dg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
...+|.+++.| .+|++=+
T Consensus 319 ~e~iils~~sd--------k~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSD--------KTIYLGE 336 (338)
T ss_pred CCcEEEEeccC--------ceeEeec
Confidence 99999999988 8888733
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=239.67 Aligned_cols=231 Identities=20% Similarity=0.231 Sum_probs=196.0
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.++..++.+.+|+.... .+...+.-...+|.+..++.... .+++|+.|+.|+|++++
T Consensus 28 ~la~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRkn----Wiv~GsDD~~IrVfnyn-------------- 85 (794)
T KOG0276|consen 28 ILAALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKN----WIVTGSDDMQIRVFNYN-------------- 85 (794)
T ss_pred EEEeeecCeeEEEecccc----eeeeeeeecccchhhheeeeccc----eEEEecCCceEEEEecc--------------
Confidence 344556788999998764 34455665667788877666555 79999999999997766
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t-g~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
++..+..|..|.+.+.|++.||. ..+++|+|.|-+|++||-+. ..+.++|.+|...|.+++|+|..
T Consensus 86 -t~ekV~~FeAH~DyIR~iavHPt---------~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD--- 152 (794)
T KOG0276|consen 86 -TGEKVKTFEAHSDYIRSIAVHPT---------LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD--- 152 (794)
T ss_pred -cceeeEEeeccccceeeeeecCC---------CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC---
Confidence 45678999999999999999997 78999999999999999875 46789999999999999999984
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC--CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spd--g~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~ 714 (1471)
.+.|+|+|-|++|++|++....+..++.||...|++|.+-+. ..||++|+.| .+|+|||.+|.+|+++
T Consensus 153 --~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD--------~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 153 --PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD--------LTIKVWDYQTKSCVQT 222 (794)
T ss_pred --ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC--------ceEEEeecchHHHHHH
Confidence 679999999999999999999999999999999999999664 4699999999 9999999999999999
Q ss_pred EeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 715 l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
+.||...|-.+.|.|+... +.+.++|||+|+|+..++..
T Consensus 223 LeGHt~Nvs~v~fhp~lpi-----------------iisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPI-----------------IISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred hhcccccceEEEecCCCcE-----------------EEEecCCccEEEecCcceeh
Confidence 9999999988888865431 22445699999999766554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=213.01 Aligned_cols=277 Identities=17% Similarity=0.163 Sum_probs=206.7
Q ss_pred eecccccCccccccccC-CCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 478 SDLTFCQDTVPRSEHVD-SRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~-~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
+...+.+.++-+|++.. ....|.....+.+|...|+.+.+.++.. +.++|+.||++++ ||
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----~alS~swD~~lrl---------------WD 91 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----FALSASWDGTLRL---------------WD 91 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----eEEeccccceEEE---------------EE
Confidence 34445556666777543 3445666778899999999999888887 6999999999999 44
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc--CCCEEEEEECCCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQT 634 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H--~~~V~~l~fspd~~ 634 (1471)
..++++.+.|.||+..|.+++|++| ++.++|||.|.+|++|++. |.+..++..+ .+-|.++.|+|++
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~d---------n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~- 160 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTD---------NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE- 160 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCC---------CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC-
Confidence 6677899999999999999999998 8999999999999999986 5566666554 6889999999983
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000473 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1471)
Q Consensus 635 ~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~ 714 (1471)
..-+|+++|.|++|++||+++.+...++.||.+.++.+++||||...++|+.| |.+.+||++.++.+..
T Consensus 161 ---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--------g~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 161 ---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--------GEAMLWDLNEGKNLYS 229 (315)
T ss_pred ---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC--------ceEEEEEccCCceeEe
Confidence 24589999999999999999999999999999999999999999999999998 9999999999999777
Q ss_pred EeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccccccccccccCCCCCccccccCCCCCCC
Q 000473 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPS 794 (1471)
Q Consensus 715 l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 794 (1471)
+. |...|-...|.| ....+....+..||+|++..... ++.-+.+..
T Consensus 230 l~-a~~~v~sl~fsp------------------nrywL~~at~~sIkIwdl~~~~~--------------v~~l~~d~~- 275 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSP------------------NRYWLCAATATSIKIWDLESKAV--------------VEELKLDGI- 275 (315)
T ss_pred cc-CCCeEeeEEecC------------------CceeEeeccCCceEEEeccchhh--------------hhhcccccc-
Confidence 65 444444444553 11222333466799999732110 110011100
Q ss_pred CCCcccccccccccccCCCCCcceEEEechhhccccc
Q 000473 795 LNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1471)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~l~fd~e~l~~~~ 831 (1471)
.|........-+-+.|+..|++.+.=+-++.|...
T Consensus 276 --g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 276 --GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred --ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 00000001123345688899999888887776544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=230.86 Aligned_cols=221 Identities=23% Similarity=0.271 Sum_probs=189.4
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
++.....++++++||...- .+...+.+|.+.|.|+. |....+++|+.|.+|+||+
T Consensus 209 kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLq------yd~rviisGSSDsTvrvWD--------------- 263 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQ------YDERVIVSGSSDSTVRVWD--------------- 263 (499)
T ss_pred hhhcccccCceEEeccccH----HHHHhhhcCCCcEEeee------ccceEEEecCCCceEEEEe---------------
Confidence 4667778999999997653 66778899999999976 5555799999999999944
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc---eEEEEeccCCCEEEEEECCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQ 633 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~---~l~~~~~H~~~V~~l~fspd~ 633 (1471)
+++++++.++-+|...|..+.|+ +.+++|+|.|.+|.+||+.+.. +.+++.+|...|..+.|+.
T Consensus 264 v~tge~l~tlihHceaVLhlrf~-----------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS-----------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe-----------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence 55788999999999999999997 5799999999999999998765 3467889999999999964
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 634 ~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
++++|++.|.+|++|++.++++++++.||...|-|+.+. |+++++|+.| .+|++||++.|.+++
T Consensus 331 ------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD--------ntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 331 ------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD--------NTIRLWDIECGACLR 394 (499)
T ss_pred ------ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC--------ceEEEEeccccHHHH
Confidence 499999999999999999999999999999999998885 7889888888 999999999999999
Q ss_pred EEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 714 ~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
.+.||..-+-++.|.++ -+.+|.+ ||++|+|+++.-++
T Consensus 395 vLeGHEeLvRciRFd~k--------rIVSGaY-----------DGkikvWdl~aald 432 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDNK--------RIVSGAY-----------DGKIKVWDLQAALD 432 (499)
T ss_pred HHhchHHhhhheeecCc--------eeeeccc-----------cceEEEEecccccC
Confidence 99999998888888742 1233333 99999999865443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=210.51 Aligned_cols=141 Identities=26% Similarity=0.388 Sum_probs=124.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++++.||.+.+| + ..+++....+..|...|.++.|+|+ ++.+++++.|+.|++|
T Consensus 149 ~l~~~~~~~~i~i~--d-------------~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 149 FVASSSQDGTIKLW--D-------------LRTGKCVATLTGHTGEVNSVAFSPD---------GEKLLSSSSDGTIKLW 204 (289)
T ss_pred EEEEEcCCCcEEEE--E-------------ccccccceeEecCccccceEEECCC---------cCEEEEecCCCcEEEE
Confidence 35556668888883 3 3344566778889999999999997 7788899899999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~s 686 (1471)
|+.+++.+..+..|...|.++.|+|+ +..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++
T Consensus 205 d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ECCCCceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 99999999999899999999999998 788998888999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEE
Q 000473 687 LCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 687 gs~D~sg~~D~~gtV~VWD 705 (1471)
++.| |.|++||
T Consensus 279 ~~~d--------~~i~iw~ 289 (289)
T cd00200 279 GSAD--------GTIRIWD 289 (289)
T ss_pred ecCC--------CeEEecC
Confidence 9998 9999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=209.57 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=128.2
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
.++..|-+++.+|+-+.+||||.|-.-.||++.+ ++ ....+.||+.+|+|+.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~---ge--~~~eltgHKDSVt~~~----------------------- 113 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST---GE--FAGELTGHKDSVTCCS----------------------- 113 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccC---Cc--ceeEecCCCCceEEEE-----------------------
Confidence 4566799999999999999999999999999985 43 5667889999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCcccccccccccc
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~ 173 (1471)
|+.|+.+||||.-+|.|.||.+.+|.......-+ .....=...+|..+++..|..
T Consensus 114 ----FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---~~dieWl~WHp~a~illAG~~------------------ 168 (399)
T KOG0296|consen 114 ----FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---VEDIEWLKWHPRAHILLAGST------------------ 168 (399)
T ss_pred ----EccCceEEEecCCCccEEEEEcccCceEEEeecc---cCceEEEEecccccEEEeecC------------------
Confidence 7899999999999999999999999866554322 111122245578888888886
Q ss_pred cccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCC
Q 000473 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1471)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~ 250 (1471)
+|.+++|...+....+.+.. +.++ +++-.|. |+|++ ++++..||+|++|++.+.
T Consensus 169 ---------------DGsvWmw~ip~~~~~kv~~G-h~~~--ct~G~f~---pdGKr--~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 169 ---------------DGSVWMWQIPSQALCKVMSG-HNSP--CTCGEFI---PDGKR--ILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred ---------------CCcEEEEECCCcceeeEecC-CCCC--ccccccc---CCCce--EEEEecCceEEEEecCCC
Confidence 49999999998766655544 5555 7888888 45654 888888999999998755
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=211.51 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=179.3
Q ss_pred cccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000473 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1471)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd 581 (1471)
..++.+|.+.|++++.... .|+.++.++.|.++.+|... .-|...|.+++.|.||...|..+..++|
T Consensus 8 ~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~----------~dd~~~G~~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLT----------SDDIKYGVPVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEec----------cCccccCceeeeeeccceEecceEEccC
Confidence 3457899999999886665 34689999999999995543 1256678899999999999999999998
Q ss_pred CCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE
Q 000473 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1471)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~ 661 (1471)
+++.+|+|.|+++++||+.+|+..+.|.+|+..|.+++|+|| ...++||+.|++|++|+.. +.|
T Consensus 75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~-g~c 138 (315)
T KOG0279|consen 75 ---------GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTL-GVC 138 (315)
T ss_pred ---------CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeec-ccE
Confidence 899999999999999999999999999999999999999999 8899999999999999987 455
Q ss_pred EEEecCC--CCCcEEEEEcCC--CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeecccccccc
Q 000473 662 ERMFPGH--PNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSIS 737 (1471)
Q Consensus 662 l~~~~gh--~~~V~~v~~spd--g~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~s 737 (1471)
..++..+ ...|.|+.|+|+ ..+|++++.| ++|++||+++.++...+.||++-+..+.+.| .
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D--------ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-------D 203 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWD--------KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-------D 203 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC--------ceEEEEccCCcchhhccccccccEEEEEECC-------C
Confidence 5555444 789999999998 6899999988 9999999999999999999999888876663 2
Q ss_pred ceEEcCCccccccceeeccCCceEeecccc
Q 000473 738 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 738 g~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
|+ .-.++ .+|+.+..|+|..
T Consensus 204 Gs-----lcasG-----gkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 204 GS-----LCASG-----GKDGEAMLWDLNE 223 (315)
T ss_pred CC-----EEecC-----CCCceEEEEEccC
Confidence 22 22222 2488999999843
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=217.47 Aligned_cols=213 Identities=17% Similarity=0.165 Sum_probs=186.8
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+++.+++-.+++|+.... -++.....+|.-.|.++.+.+... .+++++.|.+|+. |+.
T Consensus 165 l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~gd----~ilS~srD~tik~---------------We~ 222 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLGD----HILSCSRDNTIKA---------------WEC 222 (406)
T ss_pred EEecCCccchhheeHHHH---HHHHHHhcCcccceeeEEEEecCC----eeeecccccceeE---------------Eec
Confidence 444444445999998753 246667789999999999777765 7999999999998 446
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC--
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-- 635 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~-- 635 (1471)
+++.++.+|.+|..-|.-++.+.| +.+++|+|.|.++++|-+.++++...++.|.-+|.+++|.|....
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~D---------Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQD---------GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS 293 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCC---------eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc
Confidence 678999999999999999999887 899999999999999999999999999999999999999987422
Q ss_pred ----CC---CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 636 ----HP---WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 636 ----~~---~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.+ .++++.+++.|++|++||+.++.|+.++.||...|..++|+|.|+||++..+| ++++|||+++
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD--------ktlrvwdl~~ 365 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD--------KTLRVWDLKN 365 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC--------CcEEEEEecc
Confidence 11 24699999999999999999999999999999999999999999999998888 9999999999
Q ss_pred CeEEEEEeCCCCCceeeeeee
Q 000473 709 GARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 709 g~~~~~l~gH~~~v~~~~~~~ 729 (1471)
+++..++..|..-+...+|.+
T Consensus 366 ~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 366 LQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred ceeeeccCCCcceeEEEecCC
Confidence 999999999998888887774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=238.25 Aligned_cols=141 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
.+++|+.||.|++|+.. +. .+...+.+|...|+++.|. + +.+|++|+.|++|++
T Consensus 632 ~latgs~dg~I~iwD~~---------------~~~~~~~~~~~h~~~V~~v~f~-~---------~~~lvs~s~D~~iki 686 (793)
T PLN00181 632 SLAFGSADHKVYYYDLR---------------NPKLPLCTMIGHSKTVSYVRFV-D---------SSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEEeCCCeEEEEECC---------------CCCccceEecCCCCCEEEEEEe-C---------CCEEEEEECCCEEEE
Confidence 47889999999994322 22 2456778999999999997 3 688999999999999
Q ss_pred EECCC------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-------------c
Q 000473 606 WDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-------------P 666 (1471)
Q Consensus 606 WDl~t------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~-------------~ 666 (1471)
||+.. +++++.+.+|...+..+.|+|+ +++|++|+.|+.|++|+.....++..+ .
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 99974 3578899999999999999998 899999999999999998765443222 2
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 667 gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
.|...|.+++|+|++.+|++|+.| |+|+|||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~d--------G~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANST--------GNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCC--------CcEEEEec
Confidence 345679999999999999999998 99999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=234.05 Aligned_cols=232 Identities=18% Similarity=0.262 Sum_probs=195.3
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+..+..++++++|+...... .+...+.+|...|+.+++.++.. .+++|+.|++|+| |+ .
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiri--wd-------------~ 232 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRI--WD-------------L 232 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCc----EEEEecCCceEEE--ee-------------c
Confidence 66677788999999855432 34555688999999998555555 7999999999999 44 3
Q ss_pred -CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC
Q 000473 558 -NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 558 -~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
+.+..++++.||...|++++|+|+ +++++||+.|++|++||+++++++..+.+|.++|.+++|+++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~---------g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d---- 299 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPD---------GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD---- 299 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCC---------CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC----
Confidence 345788999999999999999998 799999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCC--cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 637 PWSDCFLSVGEDFSVALASLETLR--VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~--~l~~~~gh~~~--V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
++.+++++.|+.|++||+.++. ++..+.++... ++.++|+|++.|+++++.| +.+++||+..+...
T Consensus 300 --~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d--------~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 300 --GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD--------RTLKLWDLRSGKSV 369 (456)
T ss_pred --CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC--------CeEEEEEccCCcce
Confidence 9999999999999999999999 67888888776 8999999999999999999 99999999999999
Q ss_pred EEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 713 ~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
+.+.+|...+.+. |+... ......++..+.|+.+..|++..
T Consensus 370 ~~~~~~~~~~~~~-~~~~~-------------~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 370 GTYTGHSNLVRCI-FSPTL-------------STGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eeecccCCcceeE-ecccc-------------cCCCCeEEEEeCCceEEEEeCCc
Confidence 9999999764222 33110 11223355666799999999753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=221.25 Aligned_cols=191 Identities=18% Similarity=0.173 Sum_probs=171.5
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~s 579 (1471)
.....|..|...|.|++++|... .+++++.|-.|++|+|+. .-.+.++|.||+..|.+++|.
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P----~vLtsSDDm~iKlW~we~--------------~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLP----YVLTSSDDMTIKLWDWEN--------------EWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred eeeEEeeccccceeeeeecCCCC----eEEecCCccEEEEeeccC--------------ceeeeeEEcCcceEEEEEEec
Confidence 44567899999999999888777 699999999999988872 225789999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000473 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1471)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~ 659 (1471)
|. +.+.++|+|-|+||++|.+.+..+..++.+|...|.++.|-|. .+..+++||++|.+|++||.++.
T Consensus 150 Pk--------D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~----gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 150 PK--------DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTG----GDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CC--------CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccC----CCcceEEecCCCceEEEeecchH
Confidence 97 4789999999999999999999999999999999999999885 11349999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 660 ~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
.|++++.||...|..+.|+|.-..+++|++| |+|+||+-.|.+++.++.--..++.++...
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED--------GTvriWhs~Ty~lE~tLn~gleRvW~I~~~ 278 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSED--------GTVRIWNSKTYKLEKTLNYGLERVWCIAAH 278 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCC--------ccEEEecCcceehhhhhhcCCceEEEEeec
Confidence 9999999999999999999999999999999 999999999999998888777777777544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-22 Score=222.07 Aligned_cols=227 Identities=15% Similarity=0.076 Sum_probs=190.5
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
++.+.+.++-+.+|+...- .....++.|...|+++.+.++.. .+++|..+|.|++ |+. +
T Consensus 110 RLltgs~SGEFtLWNg~~f----nFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKy--Wqp-----------n 168 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSF----NFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKY--WQP-----------N 168 (464)
T ss_pred eeEeecccccEEEecCcee----eHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEe--ccc-----------c
Confidence 4777778888889986321 12233588999999999777776 7999999999999 551 1
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC
Q 000473 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
...++.+.+|. ..|.+++|+|. ...++|+|.|++|+|||....+...++.+|.-.|.++.|+|.
T Consensus 169 ---mnnVk~~~ahh~eaIRdlafSpn---------DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--- 233 (464)
T KOG0284|consen 169 ---MNNVKIIQAHHAEAIRDLAFSPN---------DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--- 233 (464)
T ss_pred ---hhhhHHhhHhhhhhhheeccCCC---------CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---
Confidence 13345556665 89999999997 789999999999999999988888899999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
...++++|.|..|++||.++++|+.++.+|...|..+.|.|++++|++++.| ..++++|+++.+.++++
T Consensus 234 ---kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 234 ---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRTMKELFTY 302 (464)
T ss_pred ---cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhHhHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 716 ~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
+||...++.+.+.|-. .+.. .+...|+.+..|.+.
T Consensus 303 r~Hkkdv~~~~WhP~~-----~~lf-----------tsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLN-----ESLF-----------TSGGSDGSVVHWVVG 337 (464)
T ss_pred hcchhhheeecccccc-----ccce-----------eeccCCCceEEEecc
Confidence 9999999998777521 1222 222338888888775
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=209.32 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
.++..|--+.||++|++|||++.|.+.++|++.. ....+...++.||..+|..+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~--d~~~kl~~tlvgh~~~V~yi~----------------------- 276 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY--DVHFKLKKTLVGHSQPVSYIM----------------------- 276 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec--CcceeeeeeeecccCceEEEE-----------------------
Confidence 4556799999999999999999999999999985 455778899999999999998
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~ 126 (1471)
+|||..||++++.|-.+.+||+.+|.++.
T Consensus 277 ----wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 277 ----WSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred ----ECCCCCeEEecCchHheeeccCCcchhhh
Confidence 79999999999999999999999998775
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=218.07 Aligned_cols=220 Identities=17% Similarity=0.202 Sum_probs=185.1
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+...++++++++||..+. .+..++.+|...|..+. |+...+++.+.|.+|.||+.+ . .
T Consensus 250 iisGSSDsTvrvWDv~tg----e~l~tlihHceaVLhlr------f~ng~mvtcSkDrsiaVWdm~--s----------p 307 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTG----EPLNTLIHHCEAVLHLR------FSNGYMVTCSKDRSIAVWDMA--S----------P 307 (499)
T ss_pred EEecCCCceEEEEeccCC----chhhHHhhhcceeEEEE------EeCCEEEEecCCceeEEEecc--C----------c
Confidence 556678899999999885 45677888999998876 767789999999999994433 1 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
....+.+.|.||..+|+.+.|+ .++++|+|.|.+|++|++.++++++++.+|...|-|+.+.
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd-----------~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr------- 369 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFD-----------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR------- 369 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccc-----------cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-------
Confidence 1225567789999999999986 5799999999999999999999999999999999999874
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-------
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA------- 710 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~------- 710 (1471)
++.++||+.|.+|++||+..|.|+++++||+.-|.++.|. .+.+++|..| |+|+|||+.++.
T Consensus 370 -~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD--------GkikvWdl~aaldpra~~~ 438 (499)
T KOG0281|consen 370 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD--------GKIKVWDLQAALDPRAPAS 438 (499)
T ss_pred -CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc--------ceEEEEecccccCCccccc
Confidence 6799999999999999999999999999999999999995 6789888888 999999998864
Q ss_pred --EEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 711 --RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 711 --~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
++.++..|+++|...+|.. . .+++++-|.+|.+|+.-+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQFD~---f----------------qIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQFDE---F----------------QIISSSHDDTILIWDFLN 478 (499)
T ss_pred chHHHhhhhccceeEEEeecc---e----------------EEEeccCCCeEEEEEcCC
Confidence 4567778888888887762 1 234555689999999644
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=197.99 Aligned_cols=228 Identities=18% Similarity=0.215 Sum_probs=185.2
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+++.+.+-+++.|+... |.|..+++.....|+++.+.++.. .|+.|+ .-.|++++.+
T Consensus 12 iLvsA~YDhTIRfWqa~t----G~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~------------- 69 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT----GICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLN------------- 69 (311)
T ss_pred EEEeccCcceeeeeehhc----CeEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEcc-------------
Confidence 366778889999999876 577888888888999999777776 465554 5688884433
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
..+..++.++.+|+..|+.+.|+.+ ++++.|||.||+++|||++...+-+.| .|..+|+++..+|+
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~d---------grWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpn---- 135 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCD---------GRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPN---- 135 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeec---------CeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCC----
Confidence 1223578999999999999999987 999999999999999999986665555 56799999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------cEEEEecC
Q 000473 637 PWSDCFLSVGEDFSVALASLETL-------------------------------------------------RVERMFPG 667 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~-------------------------------------------------~~l~~~~g 667 (1471)
+.-|+++..+|.|++||+.+. .++..|+.
T Consensus 136 --QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 136 --QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred --cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 677888888888888888642 34556778
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeeeccccccccceEEcCCcc
Q 000473 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 746 (1471)
Q Consensus 668 h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~ 746 (1471)
|.+.+..+.+|||++||++++.| .+++||+.++. +++..+.||+.-+.-..|+. +|.
T Consensus 214 h~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~------------dg~-- 271 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSD--------KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA------------DGE-- 271 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCC--------ceEEEEecCCceeeEEEeecCCceEEeeeecc------------Ccc--
Confidence 88999999999999999999999 99999999998 88999999998888877771 222
Q ss_pred ccccceeeccCCceEeecccc
Q 000473 747 VSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 747 ~s~~l~~~~~D~tir~w~l~~ 767 (1471)
-+++.+.|++.|.|++..
T Consensus 272 ---YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 272 ---YLVTASSDHTARLWDLSA 289 (311)
T ss_pred ---EEEecCCCCceeeccccc
Confidence 245666699999998743
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=210.58 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=171.9
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~s 579 (1471)
.+...+.+|-+.|.|+++-+.+. .+++|+.|++|.| ||+.+++...++.||...|..++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikI---------------wDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKI---------------WDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred eehhhhhhccceEEEEeeCCCce----eEEecCCCceeEE---------------EEcccCeEEEeecchhheeeeeeec
Confidence 44556789999999999666655 7999999999999 4577889999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000473 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1471)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~ 659 (1471)
+- ..++++++.|+.|+.||+...+.++.+.+|-..|.++..+|. -+.+++++.|.++++||+++.
T Consensus 203 ~r---------HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 203 KR---------HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred cc---------CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeeccc
Confidence 86 689999999999999999999999999999999999999998 789999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 660 ~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
..+..+.||..+|..|.+.|.+..+++|+.| ++|++||++.|+...++..|...|.+....
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D--------~tvrlWDl~agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHD--------STVRLWDLRAGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCC--------ceEEEeeeccCceeEeeecccceeeEEecC
Confidence 9999999999999999999999999999999 999999999999999999998777775444
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=211.66 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=192.8
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+.+.+.++++||+.. |++..++.+|-..|..+++..-.. ++.++++|+.|+- | |+
T Consensus 166 f~tgs~DrtikIwDlat----g~LkltltGhi~~vr~vavS~rHp----YlFs~gedk~VKC--w-------------DL 222 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRHP----YLFSAGEDKQVKC--W-------------DL 222 (460)
T ss_pred EEecCCCceeEEEEccc----CeEEEeecchhheeeeeeecccCc----eEEEecCCCeeEE--E-------------ec
Confidence 56667789999999987 578888999999999988555444 6999999999998 3 34
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
+..+.++.+.||-..|.||+.+|. -.+|+||+.|.++|+||+++...++++.+|..+|.++.+.|-
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPT---------ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~----- 288 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPT---------LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT----- 288 (460)
T ss_pred hhhhhHHHhccccceeEEEecccc---------ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-----
Confidence 556788899999999999999997 799999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
...++|||.|++|++||++.|+....+..|...|.+++.+|....++++|.| .|+-|++..|..++.+.|
T Consensus 289 -dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d---------nik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 289 -DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD---------NIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc---------cceeccCCccchhhcccc
Confidence 6689999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred CCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 718 H~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
|.+-+...... ..|.+..|.. .+.+..|+-+
T Consensus 359 h~~iintl~~n-------sD~v~~~G~d-----------ng~~~fwdwk 389 (460)
T KOG0285|consen 359 HNAIINTLSVN-------SDGVLVSGGD-----------NGSIMFWDWK 389 (460)
T ss_pred ccceeeeeeec-------cCceEEEcCC-----------ceEEEEEecC
Confidence 99766555222 1344444443 6677788753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=217.93 Aligned_cols=340 Identities=16% Similarity=0.175 Sum_probs=243.3
Q ss_pred CceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccccc
Q 000473 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1471)
Q Consensus 16 ~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1471)
+.+|-.++|+|..+.+.|+=..|.|.+||..- ...+..+.+|.+||..+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~------------------------- 58 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVD------------------------- 58 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceee-------------------------
Confidence 47899999999999999999999999999873 456777889999999998
Q ss_pred ccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCcccccccccccccc
Q 000473 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1471)
Q Consensus 96 ~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~ 175 (1471)
|.|.++++|||++|-.|+||+..+.+|+.+...| .+....+.+.++-+|++.+..+
T Consensus 59 --FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH--lDYVRt~~FHheyPWIlSASDD-------------------- 114 (1202)
T KOG0292|consen 59 --FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH--LDYVRTVFFHHEYPWILSASDD-------------------- 114 (1202)
T ss_pred --ecCCCCeEEecCCccEEEEEecccceehhhhccc--cceeEEeeccCCCceEEEccCC--------------------
Confidence 6888999999999999999999999999765433 1223333344567799888776
Q ss_pred cccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCccc
Q 000473 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1471)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~ 255 (1471)
-+|+||+.++.+++.++.. +.+ +|-|..|.|. + +.++.|+-|.+|||||+..-+.
T Consensus 115 --------------QTIrIWNwqsr~~iavltG-HnH--YVMcAqFhpt---E--DlIVSaSLDQTVRVWDisGLRk--- 169 (1202)
T KOG0292|consen 115 --------------QTIRIWNWQSRKCIAVLTG-HNH--YVMCAQFHPT---E--DLIVSASLDQTVRVWDISGLRK--- 169 (1202)
T ss_pred --------------CeEEEEeccCCceEEEEec-Cce--EEEeeccCCc---c--ceEEEecccceEEEEeecchhc---
Confidence 7999999999999999886 333 2667677642 2 4477779999999999986520
Q ss_pred ccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcceeeeeeecceeEeecCCCCceeee
Q 000473 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIG 335 (1471)
Q Consensus 256 ~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~~~ 335 (1471)
.+. ..+ .+ .+ ++ . +
T Consensus 170 ------------------k~~--~pg-~~-------------e~--~~------~------------------------~ 183 (1202)
T KOG0292|consen 170 ------------------KNK--APG-SL-------------ED--QM------R------------------------G 183 (1202)
T ss_pred ------------------cCC--CCC-Cc-------------hh--hh------h------------------------c
Confidence 110 000 00 00 00 0 0
Q ss_pred eEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEEEeecceeeEEe
Q 000473 336 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 415 (1471)
Q Consensus 336 g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v 415 (1471)
.. . .++-|+. ++
T Consensus 184 ~~-~--------------------------------------~~dLfg~------~D----------------------- 195 (1202)
T KOG0292|consen 184 QQ-G--------------------------------------NSDLFGQ------TD----------------------- 195 (1202)
T ss_pred cc-c--------------------------------------chhhcCC------cC-----------------------
Confidence 00 0 0000000 00
Q ss_pred eeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccccccccCC
Q 000473 416 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 495 (1471)
Q Consensus 416 ~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~ 495 (1471)
.++ |.+
T Consensus 196 --------------aVV----------------K~V-------------------------------------------- 201 (1202)
T KOG0292|consen 196 --------------AVV----------------KHV-------------------------------------------- 201 (1202)
T ss_pred --------------eee----------------eee--------------------------------------------
Confidence 001 112
Q ss_pred CCCCCccccccccCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccE
Q 000473 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAV 573 (1471)
Q Consensus 496 ~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V 573 (1471)
+.||...|+..+ |+|. .+++|+.|..|++|+|+ ..+.|.++ +..||.+.|
T Consensus 202 ---------LEGHDRGVNwaA------fhpTlpliVSG~DDRqVKlWrmn-------etKaWEvD------tcrgH~nnV 253 (1202)
T KOG0292|consen 202 ---------LEGHDRGVNWAA------FHPTLPLIVSGADDRQVKLWRMN-------ETKAWEVD------TCRGHYNNV 253 (1202)
T ss_pred ---------ecccccccceEE------ecCCcceEEecCCcceeeEEEec-------cccceeeh------hhhcccCCc
Confidence 234666677766 6664 89999999999998887 23346654 457999999
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000473 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1471)
Q Consensus 574 ~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~l 653 (1471)
.|+.|||. .++++|.|.|++|+|||+...+.+++|+...+.-+.++.+|. .+.|+.| .|+-+.+
T Consensus 254 ssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~------lNLfAAg-HDsGm~V 317 (1202)
T KOG0292|consen 254 SSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE------LNLFAAG-HDSGMIV 317 (1202)
T ss_pred ceEEecCc---------cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC------cceeeee-cCCceEE
Confidence 99999997 789999999999999999999999999988889999999998 7777655 5777777
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 654 Wdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
+-++..++. .+.+.++ .+.+- | ..|+-+|+.|.
T Consensus 318 FkleRErpa------------~~v~~n~-LfYvk--d--------~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 318 FKLERERPA------------YAVNGNG-LFYVK--D--------RFIRSYDLRTQ 350 (1202)
T ss_pred EEEcccCce------------EEEcCCE-EEEEc--c--------ceEEeeecccc
Confidence 877643332 2233222 22222 4 78888888874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=204.09 Aligned_cols=274 Identities=19% Similarity=0.254 Sum_probs=207.9
Q ss_pred eeEEEEccccCCCCCcceeEeccCCce--EeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccc
Q 000473 431 YISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1471)
Q Consensus 431 ~v~vwsl~~~~~~~~~~~k~l~~g~~~--~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h 508 (1471)
..++|+..++. .+ .+.+.++.+ ..|.+.. ...+ .+.+++.+.++++|....+...-.+...-.||
T Consensus 126 ~~riWd~~Gk~---~~--~~~Ght~~ik~v~~v~~n----~~~~----~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 126 TSRIWDLKGKS---IK--TIVGHTGPIKSVAWVIKN----SSSC----LFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred eeEEEecCCce---EE--EEecCCcceeeeEEEecC----Cccc----eEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 47899865542 11 133444444 6776654 1122 47888899999999998876655555555799
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCCC-----CCCccccCCcceEEEEecCCccEEEEEE
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHNS-----PGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~-----l~~~d~-----~~~~~d~~s~~~~~~l~gH~~~V~~la~ 578 (1471)
...|-++...++.. ++++|+.|..+.||+... ++.... ..+.....+..++-++.||+++|.++.|
T Consensus 193 k~~V~sVsv~~sgt----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGT----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred ccceeEEEecCCCC----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 99999998888777 899999999999965211 111100 0011123345678899999999999999
Q ss_pred ecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000473 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 579 spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t 658 (1471)
++ ...+.|+|.|.+|+.||+.++.+..++.+. .++.++.++|. .+++++|+.|..++|||.++
T Consensus 269 ~d----------~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~------~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 269 SD----------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL------SKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cC----------CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccc------cceeeecCCCCceeecCCCC
Confidence 86 588999999999999999999998887654 57899999998 89999999999999999987
Q ss_pred Cc---EEEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeeeecccc
Q 000473 659 LR---VERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISM 733 (1471)
Q Consensus 659 ~~---~l~~~~gh~~~V~~v~~spdg~~L-~sgs~D~sg~~D~~gtV~VWDi~tg~-~~~~l~gH~~~v~~~~~~~~~~~ 733 (1471)
+. ..++|.||.+.|.++.|+|...|+ ++|+.| +++++||+++-. .+..+.+|...+..+.+..
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D--------~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---- 399 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD--------NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---- 399 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecC--------CeEEEEEeccCCCcceeeccCCceEEEEeccC----
Confidence 53 457899999999999999987755 556666 999999999876 8999999999999987773
Q ss_pred ccccceEEcCCccccccceeeccCCceEeec
Q 000473 734 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 734 ~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
++.+.+|.. |.++|++.
T Consensus 400 ---~~~IvSGGa-----------D~~l~i~~ 416 (423)
T KOG0313|consen 400 ---GGLIVSGGA-----------DNKLRIFK 416 (423)
T ss_pred ---CceEEeccC-----------cceEEEec
Confidence 233444443 88888754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-18 Score=208.58 Aligned_cols=471 Identities=13% Similarity=0.138 Sum_probs=289.9
Q ss_pred EEEEEEcCCC--CeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccc
Q 000473 19 VTATSALTQP--PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1471)
Q Consensus 19 Vtava~SpDg--~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~ 96 (1471)
||++. +|+- .-|+.|+.+|.+.+||+++ .+.+..+.+|...||++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt-----~K~v~~f~~~~s~IT~ie-------------------------- 209 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT-----GKVVYTFQEFFSRITAIE-------------------------- 209 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEecc-----CcEEEEecccccceeEec--------------------------
Confidence 66553 4542 4467899999999999996 457788999999999997
Q ss_pred cccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccccccccc
Q 000473 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1471)
Q Consensus 97 ~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~ 176 (1471)
-+|-=..+|-|..||+|.+.|+..++.+...+.+ | |..+.+.+=+...-++++|+.
T Consensus 210 -qsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~-g~VtslSFrtDG~p~las~~~--------------------- 265 (910)
T KOG1539|consen 210 -QSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-W-GRVTSLSFRTDGNPLLASGRS--------------------- 265 (910)
T ss_pred -cCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-c-cceeEEEeccCCCeeEEeccC---------------------
Confidence 3455677999999999999999999999888775 2 333444443334456777765
Q ss_pred ccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEE-EeCCCcEEEEECCCCCCccc
Q 000473 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLM-VDSVGRLQLVPISKESHLDR 255 (1471)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llv-as~dG~V~vW~l~~~~~~~~ 255 (1471)
+|.+.+||...-++...+...+ -+.+....|.+.. -+++ ++.|+.+++|-.+.+. +
T Consensus 266 ------------~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~e------pVl~ta~~DnSlk~~vfD~~d---g 322 (910)
T KOG1539|consen 266 ------------NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGE------PVLVTAGADNSLKVWVFDSGD---G 322 (910)
T ss_pred ------------CceEEEEEcCCCeeeeeeeccc--cCCcccceecCCC------ceEeeccCCCceeEEEeeCCC---C
Confidence 4889999998877776666433 2336666666332 2454 4999999999998652 1
Q ss_pred ccCCCcccCCCcccceeccCCcccCceEEEEe-cCCcEEEEEeCCeEEEEEcCCCc--ceeeeeeecceeEeecCCCC--
Q 000473 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVA-TCGNIIALVLKDHCIFRLLGSGS--TIGEICFVDNLFCLEGGSTN-- 330 (1471)
Q Consensus 256 ~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s-~~g~~l~~~~~~~~~~~l~d~~~--~ige~~~~~~~l~~~~~~~~-- 330 (1471)
. ++ .+ +...+|++.-..|.|- .+|..+.++..++ .+|.+.... .-++.... +... ...+.+
T Consensus 323 ~--pR------~L---R~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr-t~r~fs~~~e~~~~~l~~~-~~~~-~~kk~~~~ 388 (910)
T KOG1539|consen 323 V--PR------LL---RSRGGHSAPPSCIRFYGSQGHFILSAKQDR-TLRSFSVISESQSQELGQL-HNKK-RAKKVNVF 388 (910)
T ss_pred c--ch------he---eeccCCCCCchheeeeccCcEEEEecccCc-chhhhhhhHHHHhHhhccc-cccc-cccccccc
Confidence 1 11 22 3355566666677766 4578888877776 344443321 00111000 0000 000000
Q ss_pred ------ceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCCceeeEE
Q 000473 331 ------SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIH 404 (1471)
Q Consensus 331 ------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~ 404 (1471)
.+.+..+..+. +... .. ++.+...-.+..++.|+ +.+...+...+ +..+..+++
T Consensus 389 ~~~~~k~p~i~~fa~~~--~RE~--~W------~Nv~~~h~~~~~~~tW~--~~n~~~G~~~L---~~~~~~~~~----- 448 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFEN--AREK--EW------DNVITAHKGKRSAYTWN--FRNKTSGRHVL---DPKRFKKDD----- 448 (910)
T ss_pred chhhhcCCcceeeeccc--chhh--hh------cceeEEecCcceEEEEe--ccCcccccEEe---cCccccccC-----
Confidence 00000000000 0000 00 00111111111222222 22211111000 000000000
Q ss_pred EeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeeccccc
Q 000473 405 FIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQ 484 (1471)
Q Consensus 405 f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~ 484 (1471)
....+ +. .+.|++| ..+..+.
T Consensus 449 -----~~~~a-----------------v~-vs~CGNF------------------------------------~~IG~S~ 469 (910)
T KOG1539|consen 449 -----INATA-----------------VC-VSFCGNF------------------------------------VFIGYSK 469 (910)
T ss_pred -----cceEE-----------------EE-EeccCce------------------------------------EEEeccC
Confidence 00000 00 0112221 1122233
Q ss_pred CccccccccCCCCCCCccccc---cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000473 485 DTVPRSEHVDSRQAGDGRDDF---VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1471)
Q Consensus 485 ~~v~~Wd~~~~~~~g~~~~~~---~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1471)
+.+..++.....+. ..+ ..|...|+.+++-.-+. .+++++.+|.+..|++. ...
T Consensus 470 G~Id~fNmQSGi~r----~sf~~~~ah~~~V~gla~D~~n~----~~vsa~~~Gilkfw~f~---------------~k~ 526 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHR----KSFGDSPAHKGEVTGLAVDGTNR----LLVSAGADGILKFWDFK---------------KKV 526 (910)
T ss_pred CeEEEEEcccCeee----cccccCccccCceeEEEecCCCc----eEEEccCcceEEEEecC---------------Ccc
Confidence 45555554443332 223 47889999998766665 79999999999995443 222
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCE
Q 000473 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 562 ~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~ 641 (1471)
....+. -...++++.+|.. ...++.+..|..|++.|..+.+.++.|.+|++.|+++.|+|| |++
T Consensus 527 l~~~l~-l~~~~~~iv~hr~---------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------grW 590 (910)
T KOG1539|consen 527 LKKSLR-LGSSITGIVYHRV---------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------GRW 590 (910)
T ss_pred eeeeec-cCCCcceeeeeeh---------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC------CcE
Confidence 333332 1235778888875 688999999999999999999999999999999999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 642 l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+++++.|++|++||+.++.++-.+. -..+++.+.|+|+|+||+|...| ..-||+|--++
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd-------~~gIylWsNks 649 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVD-------QNGIYLWSNKS 649 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEec-------CceEEEEEchh
Confidence 9999999999999999999988775 45678999999999999999988 25699997554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=196.76 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=196.3
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
.+..++.++++|+... |.++.++.+|...|...+..+++. .+++|+.|..+.+ ||+.
T Consensus 33 ltcGsdrtvrLWNp~r----g~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~v---------------wDV~ 89 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLR----GALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQV---------------WDVN 89 (307)
T ss_pred EEcCCCceEEeecccc----cceeeeecCCCceeeecccccccc----ccccCCCCceEEE---------------EEcc
Confidence 4555778999998654 688899999999999888777776 8999999999998 5688
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC--CceEEEEeccCCCEEEEEECCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t--g~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
+|+..+.|.||.+.|+.++|..+ ...++|||.|.++++||-++ .++++.+......|.++.+..
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNee---------sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~----- 155 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEE---------SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE----- 155 (307)
T ss_pred cCeeeeecccccceeeEEEecCc---------ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-----
Confidence 99999999999999999999986 78999999999999999875 568889988889999999854
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
+.++.|+.||+++.||++.|+...-+-|| +|+++.|+++++..+.++.| +++++-|-.||++++.+.
T Consensus 156 ---heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 156 ---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYK 222 (307)
T ss_pred ---cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhc
Confidence 58999999999999999999877666554 69999999999999999999 999999999999999999
Q ss_pred CCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccccccccc
Q 000473 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1471)
Q Consensus 717 gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~~~~~ 776 (1471)
||.........|- +. ....++..++||.+-.|+|.+-.+..+.+.
T Consensus 223 Ghkn~eykldc~l----~q-----------sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 223 GHKNMEYKLDCCL----NQ-----------SDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred ccccceeeeeeee----cc-----------cceeEEeccCCceEEEEEeccceeeeeecc
Confidence 9999988886661 11 112345566799999999865544444433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=225.17 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=170.5
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc--eEEEEecCCccEEEEEEecCCCCcc
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV--SRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~--~~~~l~gH~~~V~~la~spd~~~~~ 586 (1471)
...|++..+.++.. .+++++.|+.+++|... ..+ ..+.+.+|...|.+++|+|+
T Consensus 159 ~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~---------------~~~~~~~~~l~~h~~~v~~~~fs~d----- 214 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGR----ALAAASSDGLIRIWKLE---------------GIKSNLLRELSGHTRGVSDVAFSPD----- 214 (456)
T ss_pred cCceEEEEEcCCCC----eEEEccCCCcEEEeecc---------------cccchhhccccccccceeeeEECCC-----
Confidence 56788877444444 79999999999995442 112 45666899999999999998
Q ss_pred cCcCCCEEEEEECCCcEEEEEC-CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 587 ~~~~~~~L~SGs~DgtI~lWDl-~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~ 665 (1471)
++++++|+.|++|++||+ ..+.+++++.+|...|++++|+|+ ++.++||+.|++|++||+++++++..+
T Consensus 215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred ----CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCCeEEEee
Confidence 889999999999999999 566899999999999999999999 899999999999999999999999999
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe--EEEEEeCCCCC--ceeeeeeeccccccccceEE
Q 000473 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGISMNSISGSVL 741 (1471)
Q Consensus 666 ~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~--~~~~l~gH~~~--v~~~~~~~~~~~~~~sg~v~ 741 (1471)
.+|.+.|++++|++++.+|++++.| +.|+|||+.+++ +...+.++... +..+.|++
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp------------ 344 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP------------ 344 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCceeeeecccCCCCCCceeEEEECC------------
Confidence 9999999999999999999999888 999999999999 67888888876 55666663
Q ss_pred cCCccccccceeeccCCceEeeccccc
Q 000473 742 NGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1471)
Q Consensus 742 ~g~~~~s~~l~~~~~D~tir~w~l~~~ 768 (1471)
+|.. ++....|++++.|++...
T Consensus 345 ~~~~-----ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 345 NGKY-----LLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCcE-----EEEecCCCeEEEEEccCC
Confidence 1222 334445889999998643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=225.93 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=190.7
Q ss_pred eeecccccCccccccccCCCCCCCcccc-ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDD-FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~-~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
.+...+.++++++|+..+. ..... +.+|.+.|.++.+.+... .+++|+.|.+++| |
T Consensus 220 ~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~----~lvsgS~D~t~rv---------------W 276 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGD----KLVSGSTDKTERV---------------W 276 (537)
T ss_pred eEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCC----EEEEEecCCcEEe---------------E
Confidence 4566677888999998774 44555 899999999998776444 7999999999999 4
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
|..++.+..++.||.+.|.|+... +.++++||.|.+|++|++.++.+++.+.+|.++|.++.+.
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~-----------~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID-----------PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----- 340 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc-----------CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----
Confidence 466889999999999999999875 4678999999999999999999999999999999999986
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~ 714 (1471)
+..+++|+.|++|++||+.++++++.+.||..+|+++.+.+. .++++|+.| ++|++||++++ +++.+
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D--------~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD--------TTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec--------cceEeecCCchhhhhhh
Confidence 349999999999999999999999999999999999988765 889999999 99999999999 99999
Q ss_pred EeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 715 l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
+.+|.+-+..+.+- ++. ++....|+++++|+....+.
T Consensus 409 l~~h~~~v~~l~~~--------------~~~-----Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLR--------------DNF-----LVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred hcCCcccccccccc--------------cce-----eEeccccccEEEeecccCce
Confidence 99999877444221 122 33444599999998765543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=198.28 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=175.7
Q ss_pred cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
.+.+|.+.|....+.|+.. .+++|+.|..|.+|+-. ..-+...+++||.++|..+.|.+|
T Consensus 42 ~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~--------------gdceN~~~lkgHsgAVM~l~~~~d-- 101 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVY--------------GDCENFWVLKGHSGAVMELHGMRD-- 101 (338)
T ss_pred hcCCCcceEEEEEECCCCC----eEeecCCcceEEEEecc--------------ccccceeeeccccceeEeeeeccC--
Confidence 3578999999998555544 79999999999995421 112456778899999999999997
Q ss_pred CcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000473 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1471)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~ 663 (1471)
+..++|+|.|.+|+.||+++|++++++++|.+-|.++. |. ++...+++|++.|++++|||+++..+++
T Consensus 102 -------~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~---rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 102 -------GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS---RRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred -------CCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc---ccCCeEEEecCCCceEEEEeecccchhh
Confidence 89999999999999999999999999999999999987 43 1225688999999999999999999888
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcC
Q 000473 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1471)
Q Consensus 664 ~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g 743 (1471)
+++ ...+++++.|.-++..+++|+-| +.|++||++.+....+++||...++.+... ..|
T Consensus 170 t~~-~kyqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls------------~~g 228 (338)
T KOG0265|consen 170 TFE-NKYQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLS------------RYG 228 (338)
T ss_pred ccc-cceeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEec------------cCC
Confidence 875 34569999999999999999999 999999999999999999999999887444 345
Q ss_pred CccccccceeeccCCceEeecccccc
Q 000473 744 NTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 744 ~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
+...+..+ |.++|+|+++.+-
T Consensus 229 s~llsnsM-----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 229 SFLLSNSM-----DNTVRVWDVRPFA 249 (338)
T ss_pred Cccccccc-----cceEEEEEecccC
Confidence 66666666 9999999986554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-20 Score=219.88 Aligned_cols=233 Identities=20% Similarity=0.187 Sum_probs=194.5
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
.++..++.+++||..= +.+...|.+|.++|..+.+.+... .+|+|+.|-.|+||++.
T Consensus 25 LtslHsG~IQlWDYRM----~tli~rFdeHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk--------------- 81 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYK--------------- 81 (1202)
T ss_pred EEeecCceeeeehhhh----hhHHhhhhccCCccceeeecCCCC----eEEecCCccEEEEEecc---------------
Confidence 3455678999999754 367788999999999998444444 89999999999995554
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+.++..+|.||-+.|..+.||+. -.+++|+|.|.||++|+..+++++..+.||...|.|..|+|.
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhe---------yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------ 146 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHE---------YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------ 146 (1202)
T ss_pred cceehhhhccccceeEEeeccCC---------CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc------
Confidence 56889999999999999999997 689999999999999999999999999999999999999997
Q ss_pred CCEEEEEeCCCcEEEEECCCC---------------------------c--EEEEecCCCCCcEEEEEcCCCCEEEEEEc
Q 000473 639 SDCFLSVGEDFSVALASLETL---------------------------R--VERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~---------------------------~--~l~~~~gh~~~V~~v~~spdg~~L~sgs~ 689 (1471)
.+.++|+|-|.+||+||+... . ..+.+.||...|+-++|+|.-..|++|+.
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 789999999999999998531 1 12456799999999999999999999999
Q ss_pred CCCCCCCCCCEEEEEECCCCe--EEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 690 DHSRTSDAVDVLFIWDVKTGA--RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 690 D~sg~~D~~gtV~VWDi~tg~--~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
| ..|++|.+..-+ .+.+.+||...|.++-|.+.. ..+++.++|+++|+|++..
T Consensus 227 D--------RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-----------------~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 227 D--------RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-----------------DLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred c--------ceeeEEEeccccceeehhhhcccCCcceEEecCcc-----------------ceeEecCCCccEEEEeccc
Confidence 8 999999986543 356789999999998787531 2355667799999999865
Q ss_pred ccccccc
Q 000473 768 DERGVAF 774 (1471)
Q Consensus 768 ~~~~~~~ 774 (1471)
...-..+
T Consensus 282 Rt~v~tf 288 (1202)
T KOG0292|consen 282 RTSVQTF 288 (1202)
T ss_pred ccceeee
Confidence 4433333
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-17 Score=185.79 Aligned_cols=485 Identities=13% Similarity=0.101 Sum_probs=286.8
Q ss_pred CCCceEEEEEEcCCCCeEEEEeCCC--------cEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccc
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDG--------SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1471)
Q Consensus 14 ~p~h~Vtava~SpDg~~LaTGs~DG--------~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~ 85 (1471)
.|+..|-|++++||.-.+++|-..| .|++||-.+ ...+..+-+-...|+|++| .-
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-----L~TL~V~g~f~~GV~~vaF--sk---------- 164 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-----LSTLHVIGFFDRGVTCVAF--SK---------- 164 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-----ceeeeeeccccccceeeee--cc----------
Confidence 5667899999999988888885444 599999663 3445555566678999996 10
Q ss_pred ccccccccccccccCCCCEEEE--EeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEE-EcCCCCeEE-EEcceecccCC
Q 000473 86 WKAENSSNVMGKSSLDNGALIS--ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVIC-TLPSNPRYV-CIGCCFIDTNQ 161 (1471)
Q Consensus 86 ~~~~~~~~~~~~~s~d~~~LaS--as~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~-~~s~~~~ll-~~G~~~id~~~ 161 (1471)
...+.+|.. -+.+--|.|||+..++.....+-. ......+ +.|.+..++ .+|.
T Consensus 165 -------------~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~Gk------- 221 (626)
T KOG2106|consen 165 -------------INGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITCGK------- 221 (626)
T ss_pred -------------cCCCceEEEecCCCccccchhhchhhhccCcceec---cceEEEEEeccCCCcEEEEeCC-------
Confidence 112233332 355667999999977644332211 1112233 445555444 4454
Q ss_pred cccccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEe--ecCccccCCeEEEEEeeecCCCCceeEEEEeCC
Q 000473 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTV--FHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSV 239 (1471)
Q Consensus 162 ~~~~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl--~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~d 239 (1471)
+.+..|+..++.+..+. +.+... ..|.+++|.+ + ++++.|+++
T Consensus 222 ----------------------------~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e---n---gdviTgDS~ 266 (626)
T KOG2106|consen 222 ----------------------------GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE---N---GDVITGDSG 266 (626)
T ss_pred ----------------------------ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC---C---CCEEeecCC
Confidence 56778888777665543 333333 4588888873 3 459999999
Q ss_pred CcEEEEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ceeeeeee
Q 000473 240 GRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFV 318 (1471)
Q Consensus 240 G~V~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~-~ige~~~~ 318 (1471)
|.|.||+..... +. +++ . +|++++..+...-+|.++. +.+++- +-+||..- .+.++..|
T Consensus 267 G~i~Iw~~~~~~---------~~---k~~-----~-aH~ggv~~L~~lr~GtllS-GgKDRk-i~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 267 GNILIWSKGTNR---------IS---KQV-----H-AHDGGVFSLCMLRDGTLLS-GGKDRK-IILWDDNYRKLRETELP 326 (626)
T ss_pred ceEEEEeCCCce---------EE---eEe-----e-ecCCceEEEEEecCccEee-cCccce-EEeccccccccccccCc
Confidence 999999986541 11 122 2 4788888888777888776 666653 33566321 22222222
Q ss_pred cceeEeecCCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecCccCCCC
Q 000473 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSG 398 (1471)
Q Consensus 319 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~ 398 (1471)
+.. ..+-...-.. ..+.|++....+
T Consensus 327 e~~----------G~iRtv~e~~-----------------~di~vGTtrN~i---------------------------- 351 (626)
T KOG2106|consen 327 EQF----------GPIRTVAEGK-----------------GDILVGTTRNFI---------------------------- 351 (626)
T ss_pred hhc----------CCeeEEecCC-----------------CcEEEeeccceE----------------------------
Confidence 110 0000000000 012222111000
Q ss_pred ceeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCccccee
Q 000473 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1471)
Q Consensus 399 ~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l 478 (1471)
|++..+. ++. .+.+|.....|-....+..+ .+
T Consensus 352 --------------------------------------L~Gt~~~-~f~--~~v~gh~delwgla~hps~~-------q~ 383 (626)
T KOG2106|consen 352 --------------------------------------LQGTLEN-GFT--LTVQGHGDELWGLATHPSKN-------QL 383 (626)
T ss_pred --------------------------------------EEeeecC-Cce--EEEEecccceeeEEcCCChh-------he
Confidence 0010000 000 11111111234333211111 36
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC-EEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~-~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
.+...++.+++|+ ..++ .-+ ..-.....|.. |+|. .++.|+..|.-.|.+ .
T Consensus 384 ~T~gqdk~v~lW~--~~k~----~wt-~~~~d~~~~~~------fhpsg~va~Gt~~G~w~V~d---------------~ 435 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKL----EWT-KIIEDPAECAD------FHPSGVVAVGTATGRWFVLD---------------T 435 (626)
T ss_pred eeccCcceEEEcc--CCce----eEE-EEecCceeEee------ccCcceEEEeeccceEEEEe---------------c
Confidence 6777889999999 2211 101 11123445544 7776 689999999888732 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc-eEEEE-eccCCCEEEEEECCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVM-HHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~-~l~~~-~~H~~~V~~l~fspd~~~ 635 (1471)
++...+..-.. +.++++++|+|+ +.+|+.|+.|+.|.++-+.... ...+. +.|..+|+.+.|++|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~---------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--- 502 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPD---------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD--- 502 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCC---------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC---
Confidence 33333333333 789999999998 9999999999999999987543 33222 235589999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEe----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLR--------------VERMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t~~--------------~l~~~----~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~ 697 (1471)
++++.+.+.|-.|..|....-+ |..-| ..|...|..++-+.+++.+++|...
T Consensus 503 ---s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~------- 572 (626)
T KOG2106|consen 503 ---SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDF------- 572 (626)
T ss_pred ---CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccC-------
Confidence 9999999999999999443221 11111 1233455666666667777766665
Q ss_pred CCEEEEEECCC---CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 698 VDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 698 ~gtV~VWDi~t---g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
|+|+++...- ...-+.+.||++++..+.|...+.. +...-.|.++.+|.+
T Consensus 573 -g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~-----------------li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 573 -GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH-----------------LISTGKDTSIMQWRL 625 (626)
T ss_pred -ceEEEEccccCCCcccceeeccccceeEEEEEeeCCce-----------------EEecCCCceEEEEEe
Confidence 9999998753 3456788999999999988733221 222234888899975
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=195.38 Aligned_cols=188 Identities=14% Similarity=0.170 Sum_probs=150.8
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
++..+.+..+.++|...+- .+.+++.+|...||++.+..... ..+.++++.|..|.....+. .
T Consensus 519 LASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gl--n~~MiscGADksimFr~~qk------------~ 581 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGL--NRKMISCGADKSIMFRVNQK------------A 581 (1080)
T ss_pred hhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCC--ceEEEeccCchhhheehhcc------------c
Confidence 5566777889999986652 46788899999999998655442 01677777888776422220 0
Q ss_pred CCcceEEEEecC-----CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec---cCCCEEEEEE
Q 000473 558 NSHVSRQYFLGH-----TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIIL 629 (1471)
Q Consensus 558 ~s~~~~~~l~gH-----~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~---H~~~V~~l~f 629 (1471)
.++ ..|..| ...++.+++.|. .+++++++.|..|++||+.+|+..+.|++ |.|....+..
T Consensus 582 ~~g---~~f~r~t~t~~ktTlYDm~Vdp~---------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l 649 (1080)
T KOG1408|consen 582 SSG---RLFPRHTQTLSKTTLYDMAVDPT---------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL 649 (1080)
T ss_pred cCc---eeccccccccccceEEEeeeCCC---------cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE
Confidence 011 112222 235788899886 78999999999999999999999999986 6678888999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.|. |.++++.+.|+++.++|.-+|+|+..+.||...|+.+.|.+|-++|++.+.| |.|.||.+..
T Consensus 650 DPS------giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 650 DPS------GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--------GCIFVWKLPL 714 (1080)
T ss_pred CCC------ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC--------ceEEEEECch
Confidence 998 9999999999999999999999999999999999999999999999999888 9999999854
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=210.91 Aligned_cols=217 Identities=15% Similarity=0.200 Sum_probs=176.0
Q ss_pred cccCccccccccCCCCCCCccccccccC-ccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 482 ~~~~~v~~Wd~~~~~~~g~~~~~~~~h~-~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
...+.+|.|+..- +..+.+.+|. ..|++++ |+|+ .+++++.||+|+||++.
T Consensus 157 D~gG~iKyWqpnm-----nnVk~~~ahh~eaIRdla------fSpnDskF~t~SdDg~ikiWdf~--------------- 210 (464)
T KOG0284|consen 157 DKGGMIKYWQPNM-----NNVKIIQAHHAEAIRDLA------FSPNDSKFLTCSDDGTIKIWDFR--------------- 210 (464)
T ss_pred CCCceEEecccch-----hhhHHhhHhhhhhhheec------cCCCCceeEEecCCCeEEEEecc---------------
Confidence 3457899998643 2344455555 8899988 6665 89999999999994332
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
-.+..+.|.||.-.|.|++|||. ..+++|||.|..|++||.++|+++.++.+|...|.++.|+|+
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~---------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n------ 275 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPT---------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN------ 275 (464)
T ss_pred CCchhheeccCCCCcceeccCCc---------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC------
Confidence 23456778999999999999997 789999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE-EEe
Q 000473 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARER-VLR 716 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~-~l~ 716 (1471)
+++|+|+|.|.+++++|+++.+.++.+++|...|+++.|+|-. .+|.+||.| |.|..|.+..-+.+. .-.
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D--------gsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD--------GSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC--------CceEEEeccccccccCCCc
Confidence 8999999999999999999999999999999999999999964 567777777 999999998444443 345
Q ss_pred CCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 717 gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
+|...+....+.| +. .... +-+.|.++|.|.
T Consensus 348 AHd~~iwsl~~hP------lG------hil~-----tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 348 AHDGEIWSLAYHP------LG------HILA-----TGSNDRTVRFWT 378 (464)
T ss_pred ccccceeeeeccc------cc------eeEe-----ecCCCcceeeec
Confidence 7877787776663 11 1111 223389999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=207.60 Aligned_cols=162 Identities=20% Similarity=0.250 Sum_probs=131.9
Q ss_pred CCCceEEEEEEcC-CCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccc
Q 000473 14 PPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1471)
Q Consensus 14 ~p~h~Vtava~Sp-Dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~ 92 (1471)
.++--|+++.|.| .+.+|++|+.|+.|+|||+-. ....+.++.||+.+|.+++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~---------------------- 265 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDAS---------------------- 265 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEec----Ccceehhhhcchhhhhhhh----------------------
Confidence 3446699999999 899999999999999999983 3567788999999999998
Q ss_pred cccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccccc
Q 000473 93 NVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE 172 (1471)
Q Consensus 93 ~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~ 172 (1471)
++.++..|.|+|-|+.|++||+++|+|+.+..+. ..|..+.+.+.+..++.+|..
T Consensus 266 -----~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~s----------------- 320 (503)
T KOG0282|consen 266 -----FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGS----------------- 320 (503)
T ss_pred -----ccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecC-----------------
Confidence 6788888999999999999999999999988774 344455555555577777776
Q ss_pred ccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCC
Q 000473 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1471)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~ 250 (1471)
++.|+-||..++++++..-. ++ +.|..+.|.+ +++ ..+.++.|+.+++|+...+
T Consensus 321 ----------------d~ki~~wDiRs~kvvqeYd~-hL--g~i~~i~F~~---~g~--rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 321 ----------------DKKIRQWDIRSGKVVQEYDR-HL--GAILDITFVD---EGR--RFISSSDDKSVRIWENRIP 374 (503)
T ss_pred ----------------CCcEEEEeccchHHHHHHHh-hh--hheeeeEEcc---CCc--eEeeeccCccEEEEEcCCC
Confidence 48999999999998877665 43 3488888883 444 3677799999999998765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=212.09 Aligned_cols=217 Identities=16% Similarity=0.230 Sum_probs=163.1
Q ss_pred ccccCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 505 FVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is-~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
+.+|.+.|+++.+.+ +. +.+++|+.||+|++|+... .+ .......++..+.+|...|.+++|+|+
T Consensus 71 l~GH~~~V~~v~fsP~d~----~~LaSgS~DgtIkIWdi~~--~~------~~~~~~~~l~~L~gH~~~V~~l~f~P~-- 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDP----QKLFTASEDGTIMGWGIPE--EG------LTQNISDPIVHLQGHTKKVGIVSFHPS-- 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCC----CEEEEEeCCCEEEEEecCC--Cc------cccccCcceEEecCCCCcEEEEEeCcC--
Confidence 678999999998444 22 2799999999999954431 00 000112456789999999999999996
Q ss_pred CcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000473 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1471)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~ 663 (1471)
.+.+|++|+.|++|++||+.+++.+..+.+|...|.++.|+|+ +..|++++.|++|++||+++++.+.
T Consensus 137 ------~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 137 ------AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ------CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEEE
Confidence 1579999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCC-cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeeeeccccccccceEE
Q 000473 664 MFPGHPNY-PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVL 741 (1471)
Q Consensus 664 ~~~gh~~~-V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~-~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~ 741 (1471)
.+.+|.+. +..+.|.+++..+++++.+ ++.| +.|++||+++.. .+.....+....+...+.+
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~D--r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d------------ 268 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQ--RQIMLWDTRKMASPYSTVDLDQSSALFIPFFD------------ 268 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecC--CCCC--CeEEEEeCCCCCCceeEeccCCCCceEEEEEc------------
Confidence 99999875 4578899998888877643 2233 899999998754 4444444443333322221
Q ss_pred cCCccccccceeec-cCCceEeecccc
Q 000473 742 NGNTSVSSLLLPIH-EDGTFRQSQIQN 767 (1471)
Q Consensus 742 ~g~~~~s~~l~~~~-~D~tir~w~l~~ 767 (1471)
.+.. .++... .|+++|.|++.+
T Consensus 269 ---~d~~-~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 269 ---EDTN-LLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ---CCCC-EEEEEEeCCCeEEEEEeeC
Confidence 0111 122222 489999999854
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=198.76 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=185.2
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+.++++++++++|+.. |.....+.+|.+.|.++..+..+. ....+++++.|.++++|.|+. +.
T Consensus 117 ~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~-------~~--- 180 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNV-------GE--- 180 (423)
T ss_pred eEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecC-------ch---
Confidence 36788899999999975 577788899999999765544332 011599999999999988762 11
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC-------------------------CC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-------------------------SG 611 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~-------------------------tg 611 (1471)
..-+..+.-.||...|-++...++ +..++|||.|.++++|+.. ++
T Consensus 181 -~~~~~~~~~~GHk~~V~sVsv~~s---------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 181 -NKVKALKVCRGHKRSVDSVSVDSS---------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred -hhhhHHhHhcccccceeEEEecCC---------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 011223334599999999999887 8999999999999999932 12
Q ss_pred ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000473 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1471)
Q Consensus 612 ~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~ 691 (1471)
.++-.+.+|+.+|.++.|++. ..++|++.|++|+.||+.++++...+.+. ...+++..+|..++|++||.|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~-------~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssd- 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA-------TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSD- 321 (423)
T ss_pred CceEEecccccceeeEEEcCC-------CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCC-
Confidence 366788999999999999885 58899999999999999999998887654 458999999999999999999
Q ss_pred CCCCCCCCEEEEEECCCCe---EEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 692 SRTSDAVDVLFIWDVKTGA---RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 692 sg~~D~~gtV~VWDi~tg~---~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
..+++||.+++. ..+.+.||++-|-.+.+||....+-+ +.+-|+++|.|+++
T Consensus 322 -------r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~----------------S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 322 -------RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLV----------------SGSYDNTVKLWDVR 376 (423)
T ss_pred -------CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEE----------------EEecCCeEEEEEec
Confidence 999999999863 35789999998888888876544433 23339999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=216.00 Aligned_cols=222 Identities=20% Similarity=0.326 Sum_probs=188.3
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
++...+.+.++++||... |++..++.+|...|.++. ..+..++.|+.|.+|+| |+
T Consensus 263 ~lvsgS~D~t~rvWd~~s----g~C~~~l~gh~stv~~~~------~~~~~~~sgs~D~tVkV---------------W~ 317 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCST----GECTHSLQGHTSSVRCLT------IDPFLLVSGSRDNTVKV---------------WD 317 (537)
T ss_pred EEEEEecCCcEEeEecCC----CcEEEEecCCCceEEEEE------ccCceEeeccCCceEEE---------------Ee
Confidence 466777899999999655 688999999999999976 34447888999999999 34
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
+++++.++.+.||.++|.|+.++ +.++++|+.|++|++||+.++++++++.+|.+.|.++.+.+.
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~-----------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~---- 382 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD-----------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE---- 382 (537)
T ss_pred ccCcceEEEeccccccEEEEEec-----------CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----
Confidence 55788999999999999999986 689999999999999999999999999999999999988662
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 637 PWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
..+++|+.|++|++||+++. +|+..+.+|..-|..+.+ .+++|++++.| ++|++||..++++++++
T Consensus 383 ---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD--------~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 383 ---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSAD--------GTIKLWDAEEGECLRTL 449 (537)
T ss_pred ---ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccc--------ccEEEeecccCceeeee
Confidence 48999999999999999999 999999999998866655 47899999998 99999999999999999
Q ss_pred eC-CCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 716 RG-TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 716 ~g-H~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
.+ |...+....+. ...++....|++++.|+++....
T Consensus 450 ~~~~~~~v~~l~~~-------------------~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 450 EGRHVGGVSALALG-------------------KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccCCcccEEEeecC-------------------cceEEEEecCCeeEEEecccCch
Confidence 99 55656554221 22345566799999999865443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-18 Score=208.55 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=169.4
Q ss_pred ccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000473 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1471)
Q Consensus 483 ~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1471)
..+.+++|+.... .....+.+|...|.++.+.+.. ++.+++|+.||+|+||+.. .+. ... .....+
T Consensus 52 ~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~--t~~----~~~-~~i~~p 117 (568)
T PTZ00420 52 LIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIP--HND----ESV-KEIKDP 117 (568)
T ss_pred ceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECC--CCC----ccc-cccccc
Confidence 4567888887653 2345678999999999844421 1389999999999995433 110 000 000134
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
...+.+|.+.|.+++|+|+ ...+|++|+.|++|++||+.+++.+..+. |...|.++.|+|+ |..|
T Consensus 118 ~~~L~gH~~~V~sVaf~P~--------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~lL 182 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPM--------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNLL 182 (568)
T ss_pred eEEeecCCCcEEEEEECCC--------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCEE
Confidence 5678999999999999997 13467899999999999999999887775 5678999999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEE-----EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEe
Q 000473 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAK-----VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLR 716 (1471)
Q Consensus 643 ~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~-----v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~ 716 (1471)
++++.|+.|+|||+++++.+..+.+|.+.+.. ..|++++.+|++++.| +.+ +++|+|||+++ ++++..+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~--~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNN--MREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCC--ccEEEEEECCCCCCceEEEE
Confidence 99999999999999999999999999876533 3456899999998877 111 25899999995 66666655
Q ss_pred CCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 717 gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
.+.+...+.-+.+ ..+|. .++....|+++|.|++.
T Consensus 259 ld~~~~~L~p~~D-----~~tg~----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 259 IDNASAPLIPHYD-----ESTGL----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ecCCccceEEeee-----CCCCC----------EEEEEECCCeEEEEEcc
Confidence 4443222221211 11121 23344469999999873
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=197.12 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=191.7
Q ss_pred CCCCcccceeecccccCccccccccCCCCCCC----ccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc
Q 000473 469 ENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGD----GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1471)
Q Consensus 469 ~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~----~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~ 544 (1471)
.+||. .+.+.+-++.+.+|+..+.+-... ....|.-+...|.|+.+..+.. .+++|+.||.|+||
T Consensus 222 SPDgq---yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE----MlAsGsqDGkIKvW---- 290 (508)
T KOG0275|consen 222 SPDGQ---YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE----MLASGSQDGKIKVW---- 290 (508)
T ss_pred CCCCc---eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH----HhhccCcCCcEEEE----
Confidence 45663 467778889999999998776543 2334556778999988655554 89999999999993
Q ss_pred cccCCCCCCccccCCcceEEEEe-cCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCC
Q 000473 545 FERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623 (1471)
Q Consensus 545 l~~~d~~~~~~d~~s~~~~~~l~-gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~ 623 (1471)
.+.+|.+++.|. .|+..|+|+.|+.| +..++|+|.|.++++--+.+|+++..|++|...
T Consensus 291 -----------ri~tG~ClRrFdrAHtkGvt~l~FSrD---------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 291 -----------RIETGQCLRRFDRAHTKGVTCLSFSRD---------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred -----------EEecchHHHHhhhhhccCeeEEEEccC---------cchhhcccccceEEEeccccchhHHHhcCcccc
Confidence 356788888886 89999999999997 789999999999999999999999999999999
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-----------------------------------
Q 000473 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----------------------------------- 668 (1471)
Q Consensus 624 V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh----------------------------------- 668 (1471)
|+...|.++ |+.+++++.||+|++|+.++.+|+.+|...
T Consensus 351 vn~a~ft~d------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 351 VNEATFTDD------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceEEcCC------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999999 999999999999999999987666555311
Q ss_pred ------------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccc
Q 000473 669 ------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1471)
Q Consensus 669 ------------~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~ 736 (1471)
.+...+.+.+|.|.++.+.++| +.+|.+.+.+|.+++++.-|...++...-.|..
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED--------~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq----- 491 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGED--------GVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ----- 491 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccC--------cEEEEEEeecCceeeeeecccccccccccCccc-----
Confidence 1122345779999999999999 999999999999999999999999987555421
Q ss_pred cceEEcCCccccccceeeccCCceEeec
Q 000473 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 737 sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
+.+-+-++|+.++.|.
T Consensus 492 ------------NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 492 ------------NLLASYSEDGLLKLWK 507 (508)
T ss_pred ------------chhhhhcccchhhhcC
Confidence 2233456799888884
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=180.02 Aligned_cols=206 Identities=17% Similarity=0.234 Sum_probs=171.8
Q ss_pred cccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEE
Q 000473 502 RDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLA 577 (1471)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~la 577 (1471)
.+.+.+|.+++..++ ++|. .|++++.|..|+| |.+-. .++-.+...+ .+|+..|.+++
T Consensus 7 ~~~~~gh~~r~W~~a------whp~~g~ilAscg~Dk~vri--w~~~~----------~~s~~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVA------WHPGKGVILASCGTDKAVRI--WSTSS----------GDSWTCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred EEeecCCCCcEEEEE------eccCCceEEEeecCCceEEE--EecCC----------CCcEEEEEeccccchheeeeee
Confidence 355688999999988 5555 6999999999999 44210 1122344444 57999999999
Q ss_pred EecCCCCcccCcCCCEEEEEECCCcEEEEECCCC--ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000473 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1471)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg--~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWd 655 (1471)
|+|. +++|++||.|.++.+|.-..+ +++.++.+|...|.+++|+++ |++||+++.|++|-+|.
T Consensus 69 wsp~---------g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 69 WSPH---------GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIWE 133 (312)
T ss_pred ecCC---------CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEEE
Confidence 9997 899999999999999986644 588999999999999999999 99999999999999999
Q ss_pred CCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCeEEEEEeCCCCCceeeeeee
Q 000473 656 LET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 656 l~t---~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~---tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
+.. .+|...+.+|...|..+.|+|....|++++.| .+|++|+-. .-++.+++.||...|....|.+
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 974 46788999999999999999999999999998 999999876 3478999999999888887773
Q ss_pred ccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
.| ..++.++.|+++++|.+
T Consensus 206 ------------~G-----~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 206 ------------IG-----SRLVSCSDDGTVSIWRL 224 (312)
T ss_pred ------------CC-----ceEEEecCCcceEeeee
Confidence 12 23556777999999975
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=203.71 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=184.5
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
...+-++.+++|++... +.+..++.+|...|..+++..+.. .+.+++.|+.+++ ||++
T Consensus 231 LS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~----~fLS~sfD~~lKl---------------wDtE 288 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGT----SFLSASFDRFLKL---------------WDTE 288 (503)
T ss_pred EecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCC----eeeeeecceeeee---------------eccc
Confidence 34456678999999873 578999999999999988666665 8999999999998 5688
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+|++...+.- ...++|+.|+|+ +.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~pd--------~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------ 353 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFHPD--------NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------ 353 (503)
T ss_pred cceEEEEEec-CCCceeeecCCC--------CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------
Confidence 8988877642 235789999998 2589999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE----------------------------------------------EEEecCCC--C
Q 000473 639 SDCFLSVGEDFSVALASLETLRV----------------------------------------------ERMFPGHP--N 670 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~~~----------------------------------------------l~~~~gh~--~ 670 (1471)
+..|++.++|+++++|+.+..-. ...|.||. +
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 99999999999999999875311 11233553 3
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCcccccc
Q 000473 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~ 750 (1471)
.-..+.|||||++|++|..| |.+++||.+|-+++..+.+|...++.+.+.|... .-
T Consensus 434 ys~~v~fSpDG~~l~SGdsd--------G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~-----Sk----------- 489 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSD--------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP-----SK----------- 489 (503)
T ss_pred ceeeEEEcCCCCeEEeecCC--------ccEEEeechhhhhhhccccCCcceEEEEecCCCc-----ce-----------
Confidence 55778999999999999888 9999999999999999999988888888886322 12
Q ss_pred ceeeccCCceEeec
Q 000473 751 LLPIHEDGTFRQSQ 764 (1471)
Q Consensus 751 l~~~~~D~tir~w~ 764 (1471)
+.++.-||.|+.|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 22333388899885
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-20 Score=199.14 Aligned_cols=166 Identities=24% Similarity=0.380 Sum_probs=143.9
Q ss_pred cccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc-ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE
Q 000473 522 FYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1471)
Q Consensus 522 ~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~-d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs 598 (1471)
.|+|+ ++++|+-||-|.||++. .++.. |.+ -+....|.-|.++|.|+.|+.| ...+++|+
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~-------~GKlrKDLk-YQAqd~fMMmd~aVlci~FSRD---------sEMlAsGs 282 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYT-------TGKLRKDLK-YQAQDNFMMMDDAVLCISFSRD---------SEMLASGS 282 (508)
T ss_pred eeCCCCceEeeccccceeeeehhc-------cchhhhhhh-hhhhcceeecccceEEEeeccc---------HHHhhccC
Confidence 36776 89999999999995553 12111 111 0112235568899999999997 79999999
Q ss_pred CCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000473 599 MDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 599 ~DgtI~lWDl~tg~~l~~~~-~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~ 677 (1471)
.||.|++|.+.+|.|+++|. .|+..|+++.|+.| +..++|++-|.+|++--+++|+++..|.||.+.|+.+.|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 99999999999999999998 89999999999999 788999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 678 spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
.+||.++++++.| |+|+||+.+|++|+.++..-
T Consensus 357 t~dG~~iisaSsD--------gtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 357 TDDGHHIISASSD--------GTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred cCCCCeEEEecCC--------ccEEEecCcchhhhhhccCC
Confidence 9999999999999 99999999999999888743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=172.39 Aligned_cols=144 Identities=20% Similarity=0.302 Sum_probs=123.7
Q ss_pred EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC
Q 000473 532 FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1471)
Q Consensus 532 s~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg 611 (1471)
...|.|.|..|. +.++++.++.|.....|+.|+|+ |++|++|+.|-.+.+||+..-
T Consensus 166 ~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f~p~---------GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 166 NGLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEFDPD---------GRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred cCCceEEEEecc---------------ccccccccccCCcceEEEEECCC---------CceEeeccccceeeccChhHh
Confidence 345888886665 34678899999999999999998 999999999999999999988
Q ss_pred ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000473 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1471)
Q Consensus 612 ~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~ 691 (1471)
-|++.|.-+.-+|..+.|+.+ |++||++|+|+.|-|=++++|..+..++ +.++...|+|+|...+|+-+|.|-
T Consensus 222 iC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred hhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 899999999999999999999 9999999999999999999999999887 788899999999999999999982
Q ss_pred CC-CCCCCCEEEEEEC
Q 000473 692 SR-TSDAVDVLFIWDV 706 (1471)
Q Consensus 692 sg-~~D~~gtV~VWDi 706 (1471)
.+ ++...|+|+++-+
T Consensus 295 ~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 295 DGDSNREAGTVKIFGL 310 (313)
T ss_pred CCccccccceeEEecC
Confidence 22 0111156666643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=205.64 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=125.1
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc--------eEEEEeccCCCEEEEEECC
Q 000473 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILSP 631 (1471)
Q Consensus 560 ~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~--------~l~~~~~H~~~V~~l~fsp 631 (1471)
..++..+.+|.+.|.+++|+|+ .+.+|+||+.|++|++||+.++. ++..+.+|...|.+++|+|
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~--------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPC--------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCC--------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3567889999999999999996 26899999999999999998642 3457889999999999999
Q ss_pred CCCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 632 PQTEHPWSD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 632 d~~~~~~~~-~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
+ +. .+++++.|++|+|||+++++.+..+. |...|.+++|+|+|.+|+++|.| ++|+|||+++++
T Consensus 136 ~------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 M------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQE 200 (568)
T ss_pred C------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCc
Confidence 8 55 56899999999999999998877775 66789999999999999999998 999999999999
Q ss_pred EEEEEeCCCCCcee
Q 000473 711 RERVLRGTASHSMF 724 (1471)
Q Consensus 711 ~~~~l~gH~~~v~~ 724 (1471)
.+.++.+|.+.+..
T Consensus 201 ~i~tl~gH~g~~~s 214 (568)
T PTZ00420 201 IASSFHIHDGGKNT 214 (568)
T ss_pred EEEEEecccCCcee
Confidence 99999999876543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=205.73 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=140.9
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 565 ~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-------~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
.+.||++.|++++|+|. ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~--------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~---- 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF--------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA---- 137 (493)
T ss_pred eEeCCCCCEEEEEEcCC--------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----
Confidence 47899999999999993 1789999999999999999765 3577899999999999999972
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
++.|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.| ++|+|||+++++.+..+.+
T Consensus 138 -~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~~ 208 (493)
T PTZ00421 138 -MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVEA 208 (493)
T ss_pred -CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEec
Confidence 4699999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCce-eeeeeeccccccccceEEcCCccccccceeeccCCceEeecccccc
Q 000473 718 TASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 718 H~~~v~-~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
|.+... ...|++. .+.++.... .-..|+++++|++++..
T Consensus 209 H~~~~~~~~~w~~~------~~~ivt~G~-------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 209 HASAKSQRCLWAKR------KDLIITLGC-------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCCcceEEEEcCC------CCeEEEEec-------CCCCCCeEEEEeCCCCC
Confidence 986433 2334421 112211111 11348899999986544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=183.43 Aligned_cols=223 Identities=22% Similarity=0.259 Sum_probs=182.0
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
.+...++.+.+|+.... +....+..|...+.++.+.+... .++++..||.+.+ |+ ..
T Consensus 67 ~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~--~~-------------~~ 123 (289)
T cd00200 67 ASGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGR----ILSSSSRDKTIKV--WD-------------VE 123 (289)
T ss_pred EEEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCC----EEEEecCCCeEEE--EE-------------CC
Confidence 33444677888888764 23445667778898888555533 5666767999999 33 33
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+++....+.+|.+.|.++.|+|+ +.++++++.|+.|++||+.+++.+..+..|...|.++.|+|+
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------ 188 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPD---------GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------ 188 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCc---------CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------
Confidence 45667778899999999999996 789999988999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
++.+++++.|+.|++||+++++.+..+..|...+.+++|+|++.++++++.| |.|++||+.+++....+.+|
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED--------GTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC--------CcEEEEEcCCceeEEEcccc
Confidence 8889999999999999999999999998899999999999998888887767 99999999999999999999
Q ss_pred CCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
...+..+.+.+. ...++....|+.+++|+
T Consensus 261 ~~~i~~~~~~~~-----------------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPD-----------------GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCC-----------------CCEEEEecCCCeEEecC
Confidence 887777766631 11234455688898884
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=182.48 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=156.7
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 526 ~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
+.+++++.||++++ |++ .....+++.++.|...|.++.|.+. .++.++++|.|++|++
T Consensus 74 ~~~~~a~GDGSLrl--~d~------------~~~s~Pi~~~kEH~~EV~Svdwn~~--------~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 74 NQVIAASGDGSLRL--FDL------------TMPSKPIHKFKEHKREVYSVDWNTV--------RRRIFLTSSWDGTIKL 131 (311)
T ss_pred ceEEEEecCceEEE--ecc------------CCCCcchhHHHhhhhheEEeccccc--------cceeEEeeccCCceEe
Confidence 37889999999999 542 1123578899999999999999886 3778888899999999
Q ss_pred EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEE
Q 000473 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYI 684 (1471)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~sp-dg~~L 684 (1471)
||...++-+.+|.+|...|.+.+|+|.. +++|+++|.|++.++||++.......++.|...+.++.|+. +...|
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999999999999999999999999985 88999999999999999987555556999999999999986 45677
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEee
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1471)
Q Consensus 685 ~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w 763 (1471)
+||+.| +.||+||++. ..++.++.||.-.|-.+.|.|.-. +...+.+ =|-|+|+|
T Consensus 207 ~Tg~vd--------~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~-----------~lLaSas-----YDmT~riw 262 (311)
T KOG0277|consen 207 ATGGVD--------NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA-----------SLLASAS-----YDMTVRIW 262 (311)
T ss_pred EecCCC--------ceEEEEehhhccccceeecCCceEEEEEecCcchh-----------hHhhhcc-----ccceEEec
Confidence 888777 9999999987 457889999998777776665211 2222333 39999999
Q ss_pred ccc
Q 000473 764 QIQ 766 (1471)
Q Consensus 764 ~l~ 766 (1471)
+..
T Consensus 263 ~~~ 265 (311)
T KOG0277|consen 263 DPE 265 (311)
T ss_pred ccc
Confidence 863
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=176.19 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=165.3
Q ss_pred eecccccCccccccccCCCCCCCccccc-cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~-~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
+++.+.+..+++|++..... -.+...+ .+|...|.+++..|... .|++|+.|.++.| |..-
T Consensus 30 lAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~----~La~aSFD~t~~I--w~k~----------- 91 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGR----YLASASFDATVVI--WKKE----------- 91 (312)
T ss_pred EEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCc----EEEEeeccceEEE--eecC-----------
Confidence 56667788999999874211 1222222 57889999999665555 7999999999999 5411
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg---~~l~~~~~H~~~V~~l~fspd~ 633 (1471)
-...+++.+|.||.+.|.|++|+++ |.+|+++|.|++|-+|.+..+ ++...++.|+..|..+.|+|.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~s---------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt- 161 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSAS---------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT- 161 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCC---------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence 1234778999999999999999997 999999999999999999754 477899999999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 634 TEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 634 ~~~~~~~~l~S~s~DgsV~lWdl~---t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
..+|+|+|.|.+|++|.-. ...+++++.+|...|++++|+|.|..|++++.| ++|+||-..+.
T Consensus 162 -----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD--------~tv~Iw~~~~~- 227 (312)
T KOG0645|consen 162 -----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD--------GTVSIWRLYTD- 227 (312)
T ss_pred -----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC--------cceEeeeeccC-
Confidence 7799999999999999876 457899999999999999999999999999998 99999986532
Q ss_pred EEEEEe-CCCCCceeeeee
Q 000473 711 RERVLR-GTASHSMFDHFC 728 (1471)
Q Consensus 711 ~~~~l~-gH~~~v~~~~~~ 728 (1471)
+. -|+..+..+.++
T Consensus 228 ----~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 228 ----LSGMHSRALYDVPWD 242 (312)
T ss_pred ----cchhcccceEeeeec
Confidence 22 244455545444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-18 Score=181.51 Aligned_cols=209 Identities=17% Similarity=0.139 Sum_probs=166.5
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+...++++++||+..+ ...+..+++|...|.++.+..... ..+++++.||+|++ |+ .
T Consensus 76 ~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKL--W~-------------~ 134 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKL--WD-------------P 134 (311)
T ss_pred EEEEecCceEEEeccCCC---CcchhHHHhhhhheEEeccccccc---eeEEeeccCCceEe--ec-------------C
Confidence 445556778999995433 346778899999999987444333 26888899999999 43 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
..++.++++.||...|...+|+|.. +++++++|.|++.++||++.......+..|...|.++.|+.-+
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~--------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~---- 202 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHI--------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN---- 202 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCC--------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----
Confidence 3457789999999999999999973 8999999999999999998644444489999999999998763
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEE
Q 000473 638 WSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGA-RERV 714 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~-~l~~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg~-~~~~ 714 (1471)
.+.++||+.|+.|+.||++..+ ++..+.||.-.|.+|+|||... .|++++.| -+++|||.+.+. ++.+
T Consensus 203 -~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD--------mT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 203 -HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD--------MTVRIWDPERQDSAIET 273 (311)
T ss_pred -CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc--------ceEEecccccchhhhhh
Confidence 6799999999999999998765 5788899999999999999754 66777777 899999998554 5566
Q ss_pred EeCCCCCceeeeee
Q 000473 715 LRGTASHSMFDHFC 728 (1471)
Q Consensus 715 l~gH~~~v~~~~~~ 728 (1471)
..-|+.-+..+++.
T Consensus 274 ~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWS 287 (311)
T ss_pred hhccceEEeccccc
Confidence 66777655555444
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=183.05 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=174.5
Q ss_pred ccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000473 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1471)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~sp 580 (1471)
...+|..|...|.++...|... .+++|+.|..-.+ |+..++.....+.||++.|+|+.|+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~Afl---------------W~~~~ge~~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFL---------------WDISTGEFAGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc----eEEecCCCceEEE---------------EEccCCcceeEecCCCCceEEEEEcc
Confidence 3456899999999999776554 7999999998888 34556677888999999999999999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~ 660 (1471)
+ +.+|+||+++|.|+||+..+|.....+..-...+..+.|+|. ++.|+.|+.||++-+|.+.++.
T Consensus 117 d---------gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 117 D---------GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred C---------ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc------ccEEEeecCCCcEEEEECCCcc
Confidence 7 899999999999999999999999888877788999999997 9999999999999999999988
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceE
Q 000473 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1471)
Q Consensus 661 ~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v 740 (1471)
..+.+.||..++++=.|.|+|+.++++..| |+|++||.+||+++..+.+.... +.+.+..+..+..+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--------gti~~Wn~ktg~p~~~~~~~e~~-----~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDD--------GTIIVWNPKTGQPLHKITQAEGL-----ELPCISLNLAGSTL 248 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecC--------ceEEEEecCCCceeEEecccccC-----cCCcccccccccee
Confidence 889999999999999999999999999998 99999999999999998854421 12223344455556
Q ss_pred EcCCccccccceee
Q 000473 741 LNGNTSVSSLLLPI 754 (1471)
Q Consensus 741 ~~g~~~~s~~l~~~ 754 (1471)
..|+..+...++..
T Consensus 249 ~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 249 TKGNSEGVACGVNN 262 (399)
T ss_pred EeccCCccEEEEcc
Confidence 66666665555443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=208.22 Aligned_cols=192 Identities=20% Similarity=0.181 Sum_probs=158.7
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.++++..++++++||.... +....+.+|...|+++.+.+.. ++.+++|+.||.|++|+
T Consensus 547 ~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~---~~~L~Sgs~Dg~v~iWd--------------- 604 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSAD---PTLLASGSDDGSVKLWS--------------- 604 (793)
T ss_pred EEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCC---CCEEEEEcCCCEEEEEE---------------
Confidence 4677788999999998753 4556678999999999854321 12799999999999933
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~-~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
+.++.....+..| ..|.++.|+++ ++.+|++|+.|++|++||+.+++ .+..+.+|...|.++.|. +
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~--------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~--- 671 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSE--------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D--- 671 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCC--------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---
Confidence 3445666677655 67999999764 28999999999999999998766 567888999999999996 4
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 636 HPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t------~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
+..+++++.|++|++||++. .++++.+.+|...+..++|+|++.+|++|+.| ++|++|+...+
T Consensus 672 ---~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--------~~v~iw~~~~~ 740 (793)
T PLN00181 672 ---SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--------NEVFVYHKAFP 740 (793)
T ss_pred ---CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--------CEEEEEECCCC
Confidence 67999999999999999974 36788999999999999999999999999999 99999998776
Q ss_pred eEEEE
Q 000473 710 ARERV 714 (1471)
Q Consensus 710 ~~~~~ 714 (1471)
..+..
T Consensus 741 ~~~~s 745 (793)
T PLN00181 741 MPVLS 745 (793)
T ss_pred CceEE
Confidence 55543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=198.61 Aligned_cols=227 Identities=17% Similarity=0.207 Sum_probs=177.5
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEE-EEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS-SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts-~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
+...+.++++++|+-...... ....+.+|.+-|.. .+|.+... .+++.|+.|+.|.++.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l--~~~~~~~~~g~i~~~i~y~e~~~---~~l~~g~~D~~i~v~~--------------- 87 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYL--ETHAFEGPKGFIANSICYAESDK---GRLVVGGMDTTIIVFK--------------- 87 (745)
T ss_pred EeecCCCCceeeeeccCcccc--cceecccCcceeeccceeccccC---cceEeecccceEEEEe---------------
Confidence 344556788999987554332 12335556666665 55443221 1699999999999833
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
.....+..+|+||...|.|+....+ +. ++|||+|.|+++|-. +++...+.+|..+|++++.-|+
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~---------~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e---- 151 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGED---------GT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE---- 151 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCc---------Cc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC----
Confidence 3345788999999999999987654 44 999999999999975 6777889999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
+ .++|||.|++|++|.- ++++++|.||.+.|+.+++-++..+ ++++.| |.|+.|++ +|+++.++.
T Consensus 152 --~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsND--------g~Ir~w~~-~ge~l~~~~ 216 (745)
T KOG0301|consen 152 --N-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSND--------GSIRLWDL-DGEVLLEMH 216 (745)
T ss_pred --C-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCC--------ceEEEEec-cCceeeeee
Confidence 4 8999999999999975 8899999999999999999987665 466777 99999999 899999999
Q ss_pred CCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccccc
Q 000473 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772 (1471)
Q Consensus 717 gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~ 772 (1471)
||++.+..+... .....++++.+|+++|+|+.....+-+
T Consensus 217 ghtn~vYsis~~-----------------~~~~~Ivs~gEDrtlriW~~~e~~q~I 255 (745)
T KOG0301|consen 217 GHTNFVYSISMA-----------------LSDGLIVSTGEDRTLRIWKKDECVQVI 255 (745)
T ss_pred ccceEEEEEEec-----------------CCCCeEEEecCCceEEEeecCceEEEE
Confidence 999988776422 123456788899999999876444433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-18 Score=205.43 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=184.1
Q ss_pred CccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000473 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1471)
Q Consensus 485 ~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1471)
...++|++.. +..|...|.+........ .+++|+.|-.+-+ |. +....++.
T Consensus 14 t~Lr~~~~~~----------~~~hsaav~~lk~~~s~r----~~~~Gg~~~k~~L--~~-------------i~kp~~i~ 64 (825)
T KOG0267|consen 14 TKLRVWDTRE----------FVAHSAAVGCLKIRKSSR----SLVTGGEDEKVNL--WA-------------IGKPNAIT 64 (825)
T ss_pred eccccccchh----------hhhhhhhhceeeeeccce----eeccCCCceeecc--cc-------------ccCCchhh
Confidence 3445676543 567778888876655555 5888888776666 33 22223344
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000473 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1471)
Q Consensus 565 ~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S 644 (1471)
.|.+|..+|.||.|++. +.+|+.|+.||+|++||+..++.++++.+|...+.+|.|+|- +.++++
T Consensus 65 S~~~hespIeSl~f~~~---------E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~ 129 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTS---------ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFAS 129 (825)
T ss_pred eeeccCCcceeeecCcc---------hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEecc
Confidence 58999999999999986 789999999999999999999999999999999999999998 889999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000473 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1471)
Q Consensus 645 ~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~ 724 (1471)
|+.|..+++||.+...|.+.+.+|...|..+.|+|+|+++++|++| .+++|||...|+....+.+|...+..
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed--------~tvki~d~~agk~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED--------NTVKIWDLTAGKLSKEFKSHEGKVQS 201 (825)
T ss_pred ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc--------ceeeeecccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999998
Q ss_pred eeeeeccccccccceEEcCCccccccceeeccCCceEeecccccccccccc
Q 000473 725 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFS 775 (1471)
Q Consensus 725 ~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~~~~ 775 (1471)
..|.+.... +-+-+.|.++|+|+++.|+-..+..
T Consensus 202 le~hp~e~L-----------------la~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 202 LEFHPLEVL-----------------LAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred cccCchhhh-----------------hccCCCCceeeeeccceeEEeeccC
Confidence 887753211 1123349999999999887655443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=178.80 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=142.6
Q ss_pred ccccCccccccccCCCCC-CCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000473 481 TFCQDTVPRSEHVDSRQA-GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1471)
Q Consensus 481 s~~~~~v~~Wd~~~~~~~-g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1471)
....+.+-++++..+-.. ...+-.+ -+...|+...+ ..|.+.+|+.|++||.|++|... .++ ..-..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~W---dPFD~~rLAVa~ddg~i~lWr~~--a~g------l~e~~ 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHW---DPFDDERLAVATDDGQINLWRLT--ANG------LPENE 666 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeeccc---CCCChHHeeecccCceEEEEEec--cCC------CCccc
Confidence 334566777776553211 0111111 12234444331 12444599999999999995543 221 11122
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000473 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 560 ~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
..+...+.+|...|+++.|||- -.++|++++.|.+|++||+.+++....|.+|++.|..++|+|+ |
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPL--------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------G 732 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPL--------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD------G 732 (1012)
T ss_pred CCcceeeecccceEEEEEecch--------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC------C
Confidence 3567789999999999999996 2689999999999999999999999999999999999999999 9
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEecCCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 640 DCFLSVGEDFSVALASLETLRV-ERMFPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~~~-l~~~~gh~~-~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+.+++++.||+|++|..++++. ++.-.|..+ .--.|.|--||+++++.+.| ..+...|.+||.++
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd----k~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD----KSSERQVQMYDAQT 799 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc----ccchhhhhhhhhhh
Confidence 9999999999999999987653 443333222 33578899999999999988 22236799999875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=182.86 Aligned_cols=243 Identities=19% Similarity=0.203 Sum_probs=179.5
Q ss_pred EeeccccccccCCCCcccceeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcE
Q 000473 458 VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEI 537 (1471)
Q Consensus 458 ~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I 537 (1471)
.+|+..+ .++|. ++++.+.+.++-+|++....+ -.+..++.+|...|..+++.|+.. ++++++.|..+
T Consensus 226 EVWfl~F----S~nGk---yLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~ 293 (519)
T KOG0293|consen 226 EVWFLQF----SHNGK---YLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVL 293 (519)
T ss_pred cEEEEEE----cCCCe---eEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCC----eEEecCchHhe
Confidence 4676665 55673 578888899999999988766 466788899999999999555444 45544445555
Q ss_pred EEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEE
Q 000473 538 EVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616 (1471)
Q Consensus 538 ~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~ 616 (1471)
.+ ||+.+|.....+ .+|...+.+++|.|| +..+++|+.|+++..||++ |+.+..
T Consensus 294 ~l---------------wDv~tgd~~~~y~~~~~~S~~sc~W~pD---------g~~~V~Gs~dr~i~~wdlD-gn~~~~ 348 (519)
T KOG0293|consen 294 SL---------------WDVDTGDLRHLYPSGLGFSVSSCAWCPD---------GFRFVTGSPDRTIIMWDLD-GNILGN 348 (519)
T ss_pred ee---------------ccCCcchhhhhcccCcCCCcceeEEccC---------CceeEecCCCCcEEEecCC-cchhhc
Confidence 55 556777665554 345689999999998 8999999999999999986 222211
Q ss_pred Eec------------------------------------------cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000473 617 MHH------------------------------------------HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1471)
Q Consensus 617 ~~~------------------------------------------H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lW 654 (1471)
+++ -..+|+++..+.+ +++++.-=.+..+.+|
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d------~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD------GKLALVNLQDQEIHLW 422 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC------CcEEEEEcccCeeEEe
Confidence 111 1235666666666 7777777778888999
Q ss_pred ECCCCcEEEEecCCCC--CcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeecc
Q 000473 655 SLETLRVERMFPGHPN--YPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1471)
Q Consensus 655 dl~t~~~l~~~~gh~~--~V~~v~~sp-dg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~ 731 (1471)
|++..+.++.+.||.. .+-.-+|-. +..++++|++| +.||||+..+|.++.++.||...|.++.+.|..
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED--------~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED--------SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC--------ceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 9998888899999976 455567754 44799999998 999999999999999999999888888766532
Q ss_pred ccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
. ..+-+.+.|+|||+|....
T Consensus 495 p----------------~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 P----------------EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred H----------------HHhhccCCCCeEEEecCCc
Confidence 2 1122334599999998643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-17 Score=193.76 Aligned_cols=229 Identities=17% Similarity=0.163 Sum_probs=186.5
Q ss_pred eeecccccCccccccccCCCCCCCccccccc-cCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~-h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
.+++...++.+++||....+. ...+.+ |...|.+++ +....+.+|+.||.|.+++...
T Consensus 231 ~LavG~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~la------W~~~~lssGsr~~~I~~~dvR~----------- 289 (484)
T KOG0305|consen 231 HLAVGTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLA------WNSSVLSSGSRDGKILNHDVRI----------- 289 (484)
T ss_pred EEEEeecCCeEEEEehhhccc----cccccCCcCceeEEEe------ccCceEEEecCCCcEEEEEEec-----------
Confidence 477788889999999877644 334455 889999987 5556899999999999944331
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
. .....++.+|...|..+.|++| +.+++||+.|+.+.|||....+++..+..|.+.|.+++|+|-.
T Consensus 290 --~-~~~~~~~~~H~qeVCgLkws~d---------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-- 355 (484)
T KOG0305|consen 290 --S-QHVVSTLQGHRQEVCGLKWSPD---------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-- 355 (484)
T ss_pred --c-hhhhhhhhcccceeeeeEECCC---------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc--
Confidence 0 0112248899999999999998 8999999999999999998889999999999999999999974
Q ss_pred CCCCCEEEEEe--CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 636 HPWSDCFLSVG--EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 636 ~~~~~~l~S~s--~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
...||+|+ .|+.|++||..+++.+..... ...|..+.|++..+-|+++. |+++ +.|.||+..+..++.
T Consensus 356 ---~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sth----G~s~--n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 356 ---SGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTH----GYSE--NQITLWKYPSMKLVA 425 (484)
T ss_pred ---cCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEec----CCCC--CcEEEEeccccceee
Confidence 66899875 699999999999999888754 45699999999998887753 4455 799999999999999
Q ss_pred EEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 714 ~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
.+.||..+|+.....| +|.+. +..+.|.|+|.|++..
T Consensus 426 ~l~gH~~RVl~la~SP------------dg~~i-----~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSP------------DGETI-----VTGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcceeEEEEECC------------CCCEE-----EEecccCcEEeccccC
Confidence 9999999988875553 23333 3444599999999854
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=197.85 Aligned_cols=214 Identities=19% Similarity=0.126 Sum_probs=165.0
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCC--------------------C-----------
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHN--------------------S----------- 550 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~-----l~~~d--------------------~----------- 550 (1471)
.|.+.|.++.+..+.. +||+|++||.|+||.... +..++ .
T Consensus 265 ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 8999999999666665 799999999999964321 00000 0
Q ss_pred -----CC-Cccc---cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccC
Q 000473 551 -----PG-ASLK---VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV 621 (1471)
Q Consensus 551 -----~~-~~~d---~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~ 621 (1471)
+. ...+ .-..++.+.|.||++.|..|.|+- +++|+|+|+|.|||||++...+|+.+| .|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hn 409 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF-SHN 409 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE-ecC
Confidence 00 0000 012246677899999999999996 699999999999999999999999999 699
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEE
Q 000473 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1471)
Q Consensus 622 ~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV 701 (1471)
..|+||+|+|.. .++|+||+-|+.||||++...+.+.-...+ .-|++++|.|||++.++|+.+ |.+
T Consensus 410 dfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~--------G~C 475 (712)
T KOG0283|consen 410 DFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN--------GYC 475 (712)
T ss_pred CeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec--------cEE
Confidence 999999999974 789999999999999999988877665544 679999999999999999999 999
Q ss_pred EEEECCCCeEEEEE--eCC------CCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 702 FIWDVKTGARERVL--RGT------ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 702 ~VWDi~tg~~~~~l--~gH------~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
++|+.+.-++.... .-| ..+|+..+|++... . .++-.+.|.+||++++
T Consensus 476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~---------------~-~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP---------------D-EVLVTSNDSRIRIYDG 531 (712)
T ss_pred EEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC---------------C-eEEEecCCCceEEEec
Confidence 99999876655333 222 12677777774211 1 3344556999999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=200.33 Aligned_cols=231 Identities=16% Similarity=0.168 Sum_probs=181.8
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+++.+..+.+.+||+...-. ....+.|..|...++++.+.+ +.|+.|++|+.||.|++ || .
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~---tep~iliSGSQDg~vK~--~D-------------l 163 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHS---TEPNILISGSQDGTVKC--WD-------------L 163 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeecc---CCccEEEecCCCceEEE--Ee-------------e
Confidence 66777888999999877421 245567899999999988655 55679999999999999 33 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
.....+.++.+....|..+.|+|. .+..++++...|.+++||++.. ++...|.+|.|+|.++.|+|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~--------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn---- 231 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPG--------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN---- 231 (839)
T ss_pred ecccccccccccchhhhceeeccC--------CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC----
Confidence 445667888889999999999996 3789999999999999999865 456788999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g-h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~ 714 (1471)
+.+|||||.|++|+|||..+.+.-....- -..+|.+|+|.|+..+.+..|.- -.|..|+|||++.. -+-++
T Consensus 232 --r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm-----v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM-----VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred --CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc-----cccceEEEEeecccccccee
Confidence 89999999999999999987654332222 34579999999998877655543 12378999999764 35688
Q ss_pred EeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEe
Q 000473 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1471)
Q Consensus 715 l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~ 762 (1471)
+..|+..+..+.+- ......++.++.|+++.+
T Consensus 305 ~~eH~~~vt~i~W~----------------~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWD----------------SGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeccCccccceecc----------------CCCceeeEeecCccHHHH
Confidence 88999777776444 233456778888988765
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=192.44 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=172.0
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.....+.++-+|...+..| .+++.+|...|.|+....+. .+++|+.|.+.+||.-
T Consensus 74 l~~g~~D~~i~v~~~~~~~P----~~~LkgH~snVC~ls~~~~~-----~~iSgSWD~TakvW~~--------------- 129 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEP----LYTLKGHKSNVCSLSIGEDG-----TLISGSWDSTAKVWRI--------------- 129 (745)
T ss_pred eEeecccceEEEEecCCCCc----hhhhhccccceeeeecCCcC-----ceEecccccceEEecc---------------
Confidence 33444555666777777654 56789999999997644444 4899999999999432
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
+++...+.||+..|++++.-|+ +.++|||.|.+|++|.- ++++.+|.+|+.-|+.+++-|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e----------~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~----- 190 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPE----------NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD----- 190 (745)
T ss_pred --hhhhcccCCcchheeeeeecCC----------CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-----
Confidence 2556669999999999999885 58999999999999985 7889999999999999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
..|+|++.||.|++|++ +|+++..+.||...|.++...++++.++++++| ++++||+.. ++.++++-
T Consensus 191 --~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED--------rtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 191 --SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED--------RTLRIWKKD--ECVQVITL 257 (745)
T ss_pred --CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC--------ceEEEeecC--ceEEEEec
Confidence 47899999999999999 799999999999999999988888999999999 999999976 88888876
Q ss_pred CCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 718 H~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
..-.+..+ -| ..+|.+..|. +||.+|+|...
T Consensus 258 PttsiWsa-~~------L~NgDIvvg~-----------SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 PTTSIWSA-KV------LLNGDIVVGG-----------SDGRVRVFTVD 288 (745)
T ss_pred CccceEEE-EE------eeCCCEEEec-----------cCceEEEEEec
Confidence 55445554 22 1234444443 48888887653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=196.59 Aligned_cols=239 Identities=15% Similarity=0.137 Sum_probs=186.3
Q ss_pred cccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC----CCCCCccccCCcceEEEEecCCccEEEEE
Q 000473 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH----NSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1471)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~----d~~~~~~d~~s~~~~~~l~gH~~~V~~la 577 (1471)
......|.+.|+|+.+.++.. ++++|++|..|.||.... .+. -..+...+++.-+.+..|.||.+.|..+.
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred heeeccccCceeEEEECCCCC----eEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 345578999999988444444 899999999999976653 111 11234456677788999999999999999
Q ss_pred EecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000473 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~ 657 (1471)
|+|+ +.+|+|+|.|++|.+||..+.+++.++.+|.+.|..+.|.|- |++|||-+.|++|++|.+.
T Consensus 137 Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 137 WSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred cCCC---------ccEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEEEEcc
Confidence 9998 899999999999999999999999999999999999999998 9999999999999999988
Q ss_pred CCcEEEEecCCCC------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeecc
Q 000473 658 TLRVERMFPGHPN------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1471)
Q Consensus 658 t~~~l~~~~gh~~------~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~ 731 (1471)
+..+.+.+.++-. ....+.|||||.||++.-.- .+. ..++.|.+-.+.+....+-||.+.+..+.|.|.+
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~-n~~---~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV-NGG---KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc-cCC---cceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 8777777765433 56899999999999987552 322 2589999999999999999999999999999854
Q ss_pred ccc-cccceEEcCCccccccceeeccCCceEeecc
Q 000473 732 SMN-SISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 732 ~~~-~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
-.. .-.|...-.+ ---.-+-.-++|+++.+|.-
T Consensus 278 fe~~~~ng~~~~~~-~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 278 FERNNKNGTSTQPN-CYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred hccccccCCccCCC-cceEEEEEecCCccEEEEec
Confidence 221 1122211110 00012223456999999973
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=188.90 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=186.1
Q ss_pred cCeeEEEEccccCCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccc
Q 000473 429 RPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1471)
Q Consensus 429 ~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h 508 (1471)
+..++.|+.....+.. .+ ..+..=....+|+...++.- +|. .+...+++.+|++|+..... .-+..++..|
T Consensus 46 Dg~i~~W~~~~d~~~~-s~-~~~asme~HsDWVNDiiL~~--~~~---tlIS~SsDtTVK~W~~~~~~--~~c~stir~H 116 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEP-ST-PYIASMEHHSDWVNDIILCG--NGK---TLISASSDTTVKVWNAHKDN--TFCMSTIRTH 116 (735)
T ss_pred CceEEEeccccccCCc-cc-chhhhhhhhHhHHhhHHhhc--CCC---ceEEecCCceEEEeecccCc--chhHhhhhcc
Confidence 3458899743322110 01 12222223478987764422 331 36778889999999986643 2577888999
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe-cCCccEEEEEEecCCCCccc
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~-gH~~~V~~la~spd~~~~~~ 587 (1471)
...|.|++++....+ .+|+|+-|+.|.+|+.+..... ..+. .+ ......+. ||...|++++..+.
T Consensus 117 ~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~-l~~s-~n---~~t~~sl~sG~k~siYSLA~N~t------ 182 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTAT-LVAS-FN---NVTVNSLGSGPKDSIYSLAMNQT------ 182 (735)
T ss_pred cchheeeeecccCce---eEEecCCCccEEEEEccCcchh-hhhh-cc---ccccccCCCCCccceeeeecCCc------
Confidence 999999998544432 8999999999999666522110 0000 11 12233343 99999999999886
Q ss_pred CcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000473 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1471)
Q Consensus 588 ~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g 667 (1471)
+..+++|+..+.+++||.++++.+..+.+|+.-|..+..++| |..++|+|.|++|+|||+...+|+.++..
T Consensus 183 ---~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 183 ---GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred ---ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccccceeeeEEe
Confidence 789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 668 h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
|...|+++..+|+=.++.+|+.| |.|+.=|+++.
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd--------~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRD--------GNIYRTDLRNP 287 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCC--------CcEEecccCCc
Confidence 99999999999999999999998 99999999985
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=182.13 Aligned_cols=240 Identities=17% Similarity=0.127 Sum_probs=176.4
Q ss_pred ecccccCccccccccCCCCCC------CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAG------DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g------~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~ 552 (1471)
++.+..+.+.+||........ .....+.+|.+.=..+.... +.+-.+++|+.|+.|.+|+.+ ...
T Consensus 141 At~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~---~~~g~Lls~~~d~~i~lwdi~--~~~---- 211 (422)
T KOG0264|consen 141 ATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR---QQEGTLLSGSDDHTICLWDIN--AES---- 211 (422)
T ss_pred EecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc---ccceeEeeccCCCcEEEEecc--ccc----
Confidence 344455667777765533221 12235677777544433111 222389999999999995443 111
Q ss_pred CccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC--CCceEEEEeccCCCEEEEEEC
Q 000473 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILS 630 (1471)
Q Consensus 553 ~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~--tg~~l~~~~~H~~~V~~l~fs 630 (1471)
-+.....+...+.+|...|..++|++.+ ..++++.+.|+.+.|||++ +.++.+...+|.++|.+++|+
T Consensus 212 --~~~~~~~p~~~~~~h~~~VeDV~~h~~h--------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 212 --KEDKVVDPKTIFSGHEDVVEDVAWHPLH--------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred --cCCccccceEEeecCCcceehhhccccc--------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 0111234567889999999999999974 7899999999999999999 566678888999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 631 PPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 631 pd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
|-. +..|||||.|++|+|||+++. ++++.+.+|...|.+|.|+|+.. .|++++.| +.+.|||+..
T Consensus 282 p~~-----~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D--------~rl~vWDls~ 348 (422)
T KOG0264|consen 282 PFN-----EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD--------RRLNVWDLSR 348 (422)
T ss_pred CCC-----CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC--------CcEEEEeccc
Confidence 985 779999999999999999985 46899999999999999999865 66777777 9999999864
Q ss_pred C--------------eEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 709 G--------------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 709 g--------------~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
- +++-.-.||++.|.-..++|... =.+.++++|+.+.+|+..
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP----------------W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP----------------WTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCC----------------eEEEEecCCceEEEeecc
Confidence 1 12355568988877776774221 124466779999999863
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=180.94 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=105.2
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc----CCCEEEEEECCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH----VAPVRQIILSPP 632 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H----~~~V~~l~fspd 632 (1471)
..+..+.+....|. .|++|..+++ +..+.+.+.|.++.+.|+++.+..+.|..- ...++.+.|+|+
T Consensus 329 ~Rs~~~~~sv~~gg-~vtSl~ls~~---------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 329 IRSADKTRSVPLGG-RVTSLDLSMD---------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccCCceeeEeecCc-ceeeEeeccC---------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 33444555555554 8999999987 788888899999999999999988887642 234889999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCC--cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 633 ~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~--V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+.++++||.||+|.||++.++++...+...... |+++.|+|.|.+|++++.+ +.+.+|.
T Consensus 399 ------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~--------~~v~lW~ 459 (459)
T KOG0288|consen 399 ------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ--------KAVTLWT 459 (459)
T ss_pred ------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC--------cceEecC
Confidence 999999999999999999999999888765554 9999999999999999888 9999993
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-14 Score=171.79 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=166.4
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEE-EecccccCCCCCCccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVI-QFDLFERHNSPGASLK 556 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~-~~~~l~~~d~~~~~~d 556 (1471)
+...+..|-.++|...++..- .....+.||.+.|+.+...+... .+++.+.|.+-+++ +|. ..+.|.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w-~~~~~iSGH~~~V~dv~W~psGe----flLsvs~DQTTRlFa~wg-------~q~~wH 398 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFW-TQEPVISGHVDGVKDVDWDPSGE----FLLSVSLDQTTRLFARWG-------RQQEWH 398 (764)
T ss_pred EEEecccCcEEEEeccCccce-eeccccccccccceeeeecCCCC----EEEEeccccceeeecccc-------ccccee
Confidence 445566778889984432211 22234589999999998555554 69999999999984 231 000111
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC--------------------------
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------------------------- 610 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t-------------------------- 610 (1471)
.+..-+-|....+|+++-+. ...++||.....+|+++...
T Consensus 399 -----EiaRPQiHGyDl~c~~~vn~---------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 399 -----EIARPQIHGYDLTCLSFVNE---------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred -----eecccccccccceeeehccC---------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 11112347778999999873 57889999999999998640
Q ss_pred -----------------Cc---------------------------------eEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 611 -----------------GN---------------------------------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 611 -----------------g~---------------------------------~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
|. .++++.||.-.|.+++.+|+ ++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gn 538 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GN 538 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CC
Confidence 00 11245689999999999999 99
Q ss_pred EEEEEeCC-----CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-E--
Q 000473 641 CFLSVGED-----FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-E-- 712 (1471)
Q Consensus 641 ~l~S~s~D-----gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~-~-- 712 (1471)
.++|++.. ..|+||+..+...++.+.+|.-.|+.++|+|||+||++.|.| .++.+|....... .
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--------Rt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--------RTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC--------ceEEeeeeecccchhhh
Confidence 99999864 458999999999999999999999999999999999999999 9999998754322 2
Q ss_pred -EEEeCCCCCceeeeeeeccccccccceEEcCCcccccc-ceeeccCCceEeeccccc
Q 000473 713 -RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL-LLPIHEDGTFRQSQIQND 768 (1471)
Q Consensus 713 -~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~-l~~~~~D~tir~w~l~~~ 768 (1471)
..++.|+--+....+. .... +++.++|.++++|.....
T Consensus 611 fa~~k~HtRIIWdcsW~------------------pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWS------------------PDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hccccccceEEEEcccC------------------cccceeEEecCCceEEEEeccCc
Confidence 2355666333333333 2222 778999999999987543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=160.48 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=110.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
.|++|-+||.|.+|+ ..++ +.+..-..|+..|+.+.+++| ..++++||.|.+-++
T Consensus 161 ~ii~Ghe~G~is~~d---------------a~~g~~~v~s~~~h~~~Ind~q~s~d---------~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYD---------------ARTGKELVDSDEEHSSKINDLQFSRD---------RTYFITGSKDTTAKL 216 (327)
T ss_pred EEEEecCCCcEEEEE---------------cccCceeeechhhhccccccccccCC---------cceEEecccCcccee
Confidence 588999999999933 3343 445555779999999999998 899999999999999
Q ss_pred EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEEEECCCC------------cEEEEecCCCCCc
Q 000473 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLETL------------RVERMFPGHPNYP 672 (1471)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D-gsV~lWdl~t~------------~~l~~~~gh~~~V 672 (1471)
||..+-+.+.++.. ..||++.+++|.. ...++-|+.| .-|.--+-+.| +.+....||-++|
T Consensus 217 ~D~~tl~v~Kty~t-e~PvN~aaisP~~-----d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTT-ERPVNTAAISPLL-----DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI 290 (327)
T ss_pred eeccceeeEEEeee-cccccceeccccc-----ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence 99999999988865 4689999999972 3344444444 12222222333 3455678999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 673 ~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
++|+|+|+|+-.++|++| |.||+.-.+
T Consensus 291 NsvAfhPdGksYsSGGED--------G~VR~h~Fd 317 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGED--------GYVRLHHFD 317 (327)
T ss_pred ceeEECCCCcccccCCCC--------ceEEEEEec
Confidence 999999999999999998 999997554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=184.54 Aligned_cols=207 Identities=21% Similarity=0.203 Sum_probs=165.4
Q ss_pred cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
++..-...|.+..+-++.. .+++|.+.|.|+|++ ..+...++.+++|+.+|..+.|+|.
T Consensus 63 ~~srFk~~v~s~~fR~DG~----LlaaGD~sG~V~vfD---------------~k~r~iLR~~~ah~apv~~~~f~~~-- 121 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGR----LLAAGDESGHVKVFD---------------MKSRVILRQLYAHQAPVHVTKFSPQ-- 121 (487)
T ss_pred hHHhhccceeEEEeecCCe----EEEccCCcCcEEEec---------------cccHHHHHHHhhccCceeEEEeccc--
Confidence 3445557788888777776 789999999999943 2233456778999999999999996
Q ss_pred CcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEE
Q 000473 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVE 662 (1471)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l 662 (1471)
++..|++|++|+.+++||+.+......+.+|+..|.+.+|+|.+ ++.++|||.||+|++||++.. ..+
T Consensus 122 ------d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 122 ------DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred ------CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCcee
Confidence 48899999999999999999988767899999999999999985 679999999999999999987 555
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE-EEEeCCCCCceeeeeeeccccccccceEE
Q 000473 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE-RVLRGTASHSMFDHFCKGISMNSISGSVL 741 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~-~~l~gH~~~v~~~~~~~~~~~~~~sg~v~ 741 (1471)
.++ .|..+|..|.+-|.|..+++++.+ .|+|||+-+|..+ ..+..|...|++..+..
T Consensus 191 ~el-nhg~pVe~vl~lpsgs~iasAgGn---------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s------------ 248 (487)
T KOG0310|consen 191 VEL-NHGCPVESVLALPSGSLIASAGGN---------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS------------ 248 (487)
T ss_pred EEe-cCCCceeeEEEcCCCCEEEEcCCC---------eEEEEEecCCceehhhhhcccceEEEEEeec------------
Confidence 565 499999999999999999998874 8999999966554 44445998999886651
Q ss_pred cCCccccccceeeccCCceEeecccccc
Q 000473 742 NGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 742 ~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
++.-..++.+ |+.+++++.-+++
T Consensus 249 ~~~rLlS~sL-----D~~VKVfd~t~~K 271 (487)
T KOG0310|consen 249 DSTRLLSGSL-----DRHVKVFDTTNYK 271 (487)
T ss_pred CCceEeeccc-----ccceEEEEccceE
Confidence 1122233333 9999998865444
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=179.04 Aligned_cols=234 Identities=19% Similarity=0.187 Sum_probs=178.2
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+++...+..|++|++...+. ....++.+..+.|+++.+-+++. .++.++.|+..++ |+
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~--~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~---------------Wn 247 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKS--ELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRL---------------WN 247 (459)
T ss_pred hhhhcchhhhhhhhhcccchh--hhhhhhhccCCCcceeeecCCCc----eEEeecCCCceee---------------ee
Confidence 466777888999999887652 46677788888999998666665 6888999999999 34
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCC-Cccc-----------------------Cc------CCCEEEEEECCCcEEEE
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVG-TAKG-----------------------WS------FNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~-~~~~-----------------------~~------~~~~L~SGs~DgtI~lW 606 (1471)
+.+.+...+|.||++.|+++.|...+. .-++ .+ ....++||-.|++|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEE
Confidence 556678889999999999999866431 0000 00 13344566666666666
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCC
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRG 682 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh----~~~V~~v~~spdg~ 682 (1471)
|++++.+......+. .|+++..+++ +..+++.+.|.++.+.|+++....+.+... ....+.+.|||++.
T Consensus 328 D~Rs~~~~~sv~~gg-~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGG-RVTSLDLSMD------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eccCCceeeEeecCc-ceeeEeeccC------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 666666666666655 8999999999 889999999999999999999888777532 22489999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC--ceeeeeeeccccccccceEEcCCccccccceeeccCCce
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~--v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ti 760 (1471)
|+++|+.| |.|+||++.+|+++..+....+. ++++.|++ .| ..++.+.++..+
T Consensus 401 YvaAGS~d--------gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~------------sG-----~~Llsadk~~~v 455 (459)
T KOG0288|consen 401 YVAAGSAD--------GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP------------SG-----SGLLSADKQKAV 455 (459)
T ss_pred eeeeccCC--------CcEEEEEccCceEEEEeccCCCCcceEEEEEcC------------CC-----chhhcccCCcce
Confidence 99999999 99999999999999999887765 77777773 11 124455667777
Q ss_pred Eee
Q 000473 761 RQS 763 (1471)
Q Consensus 761 r~w 763 (1471)
..|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 777
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=175.13 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=177.9
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~s 579 (1471)
++...+.+|...|..++.-+... .+.+++.|.+-+| |.++++.++.++.||.+.|+|++||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~i---------------Ws~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP----ICGTASADHTARI---------------WSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred eehhhhcccccceeeehhhcCCc----ceeecccccceeE---------------EeeccccceeeecccccceeeEEec
Confidence 44556788999998876554443 6778888888888 4577899999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEECCCcEEEEECC------C------------------------------C----ceEEEEec
Q 000473 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------S------------------------------G----NLITVMHH 619 (1471)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~------t------------------------------g----~~l~~~~~ 619 (1471)
+. +.+++++|.|++..+|... . + -++..|.+
T Consensus 200 ~s---------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 200 NS---------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred cc---------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 86 8999999999999999721 0 0 14567899
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000473 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1471)
Q Consensus 620 H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~g 699 (1471)
|.+.|.+..|... |+.+++++.|.+-.+||++++++++.+.||....+.++-+|..+++++.+.| .
T Consensus 271 H~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD--------t 336 (481)
T KOG0300|consen 271 HRAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD--------T 336 (481)
T ss_pred cccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC--------c
Confidence 9999999999887 8999999999999999999999999999999999999999999999999999 8
Q ss_pred EEEEEECCCC-eEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccccc
Q 000473 700 VLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772 (1471)
Q Consensus 700 tV~VWDi~tg-~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~ 772 (1471)
+.++||++.. +-+.++.||+..|+.+.|... . .+++-+.|.++++|+|+|.....
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-------------d-----~vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-------------D-----RVVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecC-------------C-----ceeecCCCceEEEeeeccccCcc
Confidence 9999999843 457889999999999877731 1 12333459999999998876544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=195.32 Aligned_cols=195 Identities=19% Similarity=0.221 Sum_probs=157.0
Q ss_pred CCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEE
Q 000473 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1471)
Q Consensus 525 P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~ 604 (1471)
-+.|++++.+|.|.+|+.... ...+....|..|+..|+++.||+.+ ..+|+|||.||+|+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~------------~rnk~l~~f~EH~Rs~~~ldfh~te--------p~iliSGSQDg~vK 159 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS------------IRNKLLTVFNEHERSANKLDFHSTE--------PNILISGSQDGTVK 159 (839)
T ss_pred hhhheeecCCCcEEEEecCcc------------ccchhhhHhhhhccceeeeeeccCC--------ccEEEecCCCceEE
Confidence 347999999999999544310 1134556789999999999999863 78999999999999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCE
Q 000473 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGY 683 (1471)
Q Consensus 605 lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t-~~~l~~~~gh~~~V~~v~~spdg~~ 683 (1471)
+||++..+-..++.+....|+.|.|+|.. ++.|+++.+.|.+++||++. .++..++..|.++|.++.|+|++.+
T Consensus 160 ~~DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 160 CWDLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREW 234 (839)
T ss_pred EEeeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCce
Confidence 99999999999999999999999999985 88999999999999999975 4678889999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEe
Q 000473 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1471)
Q Consensus 684 L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH-~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~ 762 (1471)
||||+.| +.|+|||+.+++.-....-+ .+.+..+.|-|+...+..+ .. ..-|..|++
T Consensus 235 lATGGRD--------K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt-----------cs---mv~dtsV~V 292 (839)
T KOG0269|consen 235 LATGGRD--------KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT-----------CS---MVVDTSVHV 292 (839)
T ss_pred eeecCCC--------ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh-----------hh---ccccceEEE
Confidence 9999999 99999999876543333333 3466677788765433221 11 122778999
Q ss_pred eccc
Q 000473 763 SQIQ 766 (1471)
Q Consensus 763 w~l~ 766 (1471)
|+++
T Consensus 293 WDvr 296 (839)
T KOG0269|consen 293 WDVR 296 (839)
T ss_pred Eeec
Confidence 9964
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-16 Score=170.38 Aligned_cols=212 Identities=19% Similarity=0.203 Sum_probs=160.5
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
..+..|...++++++.. ..+++|+.|-+|+|++.. ....+..+..|.+.|+++.|.+..
T Consensus 37 F~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~---------------k~~qlg~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMR---------------KRKQLGILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccceeEEEecc------eeEeccCCCCcEEEEecc---------------chhhhcceeccccceEEEEecCCc
Confidence 34678999999988432 269999999999994433 345567788999999999998762
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
...+|+||+.||.|.+|+...++++..+++|.+.|+.++++|. ++..++++.|+.+++||+-+|+.-
T Consensus 96 -------S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 96 -------SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred -------chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCccc
Confidence 1349999999999999999999999999999999999999998 999999999999999999887643
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCC---------------------------------CCCCCCCCEEEEEECCCC
Q 000473 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDH---------------------------------SRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~~L~sgs~D~---------------------------------sg~~D~~gtV~VWDi~tg 709 (1471)
..+.- ....+.|.|+|.|.+++.+..+. .|..| +.|.+||...+
T Consensus 163 ~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--~~i~~~D~ds~ 239 (362)
T KOG0294|consen 163 FVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN--EWISLKDTDSD 239 (362)
T ss_pred eeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC--ceEEEeccCCC
Confidence 33321 11122355555555444433321 22222 89999999999
Q ss_pred eEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 710 ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 710 ~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
.+...+.+|.++|-.+.+-. +. ....++++++||.|++|++.
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~----~~-----------~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYT----NP-----------EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ccceeeecchhheeeeEEEe----cC-----------CceEEEEeccCceEEEEEcc
Confidence 99999999999988874331 00 01346788889999999974
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=181.34 Aligned_cols=221 Identities=16% Similarity=0.191 Sum_probs=173.4
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~ 586 (1471)
.|.+.|+...++|... +.+++++.+|.+.|+++..... ..-......+-.+|.||++.-+.|+|++.
T Consensus 122 ~h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s-----~~~~~~~~~Pdl~L~gH~~eg~glsWn~~----- 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPS-----KPKASGECRPDLRLKGHEKEGYGLSWNRQ----- 188 (422)
T ss_pred cCCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCC-----cccccccCCCceEEEeecccccccccccc-----
Confidence 4788899888777665 4788889999999966652111 00001123455689999998888999886
Q ss_pred cCcCCCEEEEEECCCcEEEEECCCCc-------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC--
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGSGN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-- 657 (1471)
Q Consensus 587 ~~~~~~~L~SGs~DgtI~lWDl~tg~-------~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~-- 657 (1471)
..-.|++|+.|++|++||+.... ....|.+|...|..++|+|-+ .+.|++++.|+.+.|||++
T Consensus 189 ---~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 189 ---QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----EDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ---cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----hhhheeecCCCeEEEEEcCCC
Confidence 36799999999999999997533 457889999999999999985 6799999999999999999
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeeecccccc
Q 000473 658 TLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNS 735 (1471)
Q Consensus 658 t~~~l~~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~v~~~~~~~~~~~~~ 735 (1471)
+.++.+...+|.++|.|++|+|-+. .||+|+.| ++|++||+++- +++.++.+|...|..+.|.|....
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D--------~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-- 330 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD--------KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-- 330 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccCC--------CcEEEeechhcccCceeccCCCcceEEEEeCCCCCc--
Confidence 5667788889999999999999665 55777777 99999999984 578999999999999999964321
Q ss_pred ccceEEcCCccccccceeeccCCceEeeccccccccc
Q 000473 736 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772 (1471)
Q Consensus 736 ~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~ 772 (1471)
. +-+...|+++.+|++.......
T Consensus 331 ---v-----------LASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 331 ---V-----------LASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ---e-----------eEecccCCcEEEEecccccccc
Confidence 1 1233359999999997655443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-12 Score=156.52 Aligned_cols=503 Identities=11% Similarity=0.042 Sum_probs=272.2
Q ss_pred ceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccc-cceeEeeeccccccccCccccccccccccccc
Q 000473 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHS-APIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1471)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~-~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1471)
..|+|+|++.+...||.+=.||.|.+|++.. + --....+.||. ..|.+|+|
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~--w~~~~vi~g~~drsIE~L~W------------------------ 77 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--N--WFLEPVIHGPEDRSIESLAW------------------------ 77 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC--C--ceeeEEEecCCCCceeeEEE------------------------
Confidence 3499999999999999999999999999984 2 22334455655 68999985
Q ss_pred ccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCcccccccccccccc
Q 000473 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1471)
Q Consensus 96 ~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~ 175 (1471)
. ++.+|.|.+.+|+|+-||+.+++.+...... |.+.--.+..+.+..+++||+
T Consensus 78 ---~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~---gg~IWsiai~p~~~~l~Igcd-------------------- 130 (691)
T KOG2048|consen 78 ---A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN---GGAIWSIAINPENTILAIGCD-------------------- 130 (691)
T ss_pred ---c-cCCeEEeecCCceEEEEecccCceeEEecCC---CcceeEEEeCCccceEEeecC--------------------
Confidence 2 4667999999999999999999988776554 444434456677788899986
Q ss_pred cccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCcc-
Q 000473 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLD- 254 (1471)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~- 254 (1471)
++.+..++...+++.+.-.-.+. .+.+-++++. +++. .++.|+.||.|++||..++....
T Consensus 131 -------------dGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~---~~~~--~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 131 -------------DGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWN---PTGT--KIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred -------------CceEEEEecCCceEEEEeecccc-cceEEEEEec---CCcc--EEEecccCceEEEEEcCCCceEEE
Confidence 35566666666666543322122 2235566655 2333 37778999999999998773110
Q ss_pred -cccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc--ceeeee-eecceeEeecCCCC
Q 000473 255 -REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS--TIGEIC-FVDNLFCLEGGSTN 330 (1471)
Q Consensus 255 -~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~--~ige~~-~~~~~l~~~~~~~~ 330 (1471)
...-.++.+.+. .-+.+|.+-.+ .+|+++++.+ .+++||... .+..+. .-.+++|.....++
T Consensus 192 ~~~~~d~l~k~~~------------~iVWSv~~Lrd-~tI~sgDS~G-~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 192 ITMQLDRLSKREP------------TIVWSVLFLRD-STIASGDSAG-TVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred eeecccccccCCc------------eEEEEEEEeec-CcEEEecCCc-eEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 000111111110 01234444433 4455565554 344576654 222221 11133333322211
Q ss_pred ceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeecCCCCCcccCeeeecC--ccCCCCceeeEEEeec
Q 000473 331 SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPA--VSYPSGVKFSIHFIQM 408 (1471)
Q Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~--v~~~~~~~~~i~f~~~ 408 (1471)
.++...+.++.++.|+....... |.+.. -.+.++.|....+..
T Consensus 258 ----------------------------d~vfsaGvd~~ii~~~~~~~~~~------wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 258 ----------------------------DRVFSAGVDPKIIQYSLTTNKSE------WVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred ----------------------------CeEEEccCCCceEEEEecCCccc------eeeeccccCCcccceeeeeecc-
Confidence 25556666777776766543221 21111 011222222111111
Q ss_pred ceeeEEeeeeeccccccccccCeeEEEEcccc--CCCCCcceeEeccCCceEeeccccccccCCCCcccceeecccccCc
Q 000473 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQK--HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDT 486 (1471)
Q Consensus 409 ~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~--~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~ 486 (1471)
.+++.. .+..+. .+..+....+.. .+....-+++...... ++...-....
T Consensus 303 --~l~sgG-----~d~~l~-i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~--------------------~L~~~w~~h~ 354 (691)
T KOG2048|consen 303 --ALISGG-----RDFTLA-ICSSREFKNMDHRQKNLFPASDRVSVAPEN--------------------RLLVLWKAHG 354 (691)
T ss_pred --eEEecc-----eeeEEE-EccccccCchhhhccccccccceeecCccc--------------------eEEEEecccc
Confidence 111100 000000 000000000000 0000000011111100 1111112334
Q ss_pred cccccccCCCCCC-----CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000473 487 VPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1471)
Q Consensus 487 v~~Wd~~~~~~~g-----~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1471)
+.+|.+....+.| .+.+........++|.+..|+.. .++.+.- .+.+|+..+- . + ++. -+
T Consensus 355 v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~----~Ia~st~-~~~~iy~L~~---~--~----~vk-~~ 419 (691)
T KOG2048|consen 355 VDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN----LIAISTV-SRTKIYRLQP---D--P----NVK-VI 419 (691)
T ss_pred ccceeccCcccccccChhhheeeecCCccceeeeccCCCCC----EEEEeec-cceEEEEecc---C--c----cee-EE
Confidence 4555554442222 22222223345577766555554 5666543 3455544431 0 0 000 00
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE-CCCcEEEEECCCCc--eEEEEe--ccCCCEEEEEECCCCCCC
Q 000473 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGN--LITVMH--HHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 562 ~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs-~DgtI~lWDl~tg~--~l~~~~--~H~~~V~~l~fspd~~~~ 636 (1471)
.+.....-.-.+..+.|.-| +..++-.+ .++.+.+.++.++. .+..+. ....+|..+..+|+
T Consensus 420 ~v~~~~~~~~~a~~i~ftid---------~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd---- 486 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTID---------KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD---- 486 (691)
T ss_pred EeccchhhhccceeeEEEec---------CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----
Confidence 11111112234566777766 45555444 77888888887654 232222 34578999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~sp-dg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
|++||..+.++.|.+|++++++.......-...|++++|+| +.+.|+.+..| +.|+=+|++.
T Consensus 487 --G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~--------nQv~efdi~~ 549 (691)
T KOG2048|consen 487 --GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN--------NQVFEFDIEA 549 (691)
T ss_pred --CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC--------CeEEEEecch
Confidence 99999999999999999999887655545568899999994 56788888887 9999999954
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=164.20 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=158.1
Q ss_pred cccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000473 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1471)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd 581 (1471)
...+..|.+.|.++.|.-+.. +.++++.|.+|++ |+...+.+++++.||...|..++.+.|
T Consensus 10 ~~~l~~~qgaV~avryN~dGn----Y~ltcGsdrtvrL---------------WNp~rg~liktYsghG~EVlD~~~s~D 70 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGN----YCLTCGSDRTVRL---------------WNPLRGALIKTYSGHGHEVLDAALSSD 70 (307)
T ss_pred ceeecccccceEEEEEccCCC----EEEEcCCCceEEe---------------ecccccceeeeecCCCceeeecccccc
Confidence 344667889999998777776 5778888999998 446667899999999999999998876
Q ss_pred CCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC--
Q 000473 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-- 659 (1471)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-- 659 (1471)
+..+++|+.|..|.+||+.+|+.+++|.+|.+.|..+.|+.+ ...++||+-|.++++||.++.
T Consensus 71 ---------nskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee------sSVv~SgsfD~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 71 ---------NSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE------SSVVASGSFDSSVRLWDCRSRSF 135 (307)
T ss_pred ---------ccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc------ceEEEeccccceeEEEEcccCCC
Confidence 789999999999999999999999999999999999999988 789999999999999999764
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeee
Q 000473 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 660 ~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
++++.+......|.+|... +..|++|+.| |++|.||++.|++---+.||. +.++.|.+
T Consensus 136 ePiQildea~D~V~Si~v~--~heIvaGS~D--------GtvRtydiR~G~l~sDy~g~p--it~vs~s~ 193 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVA--EHEIVAGSVD--------GTVRTYDIRKGTLSSDYFGHP--ITSVSFSK 193 (307)
T ss_pred CccchhhhhcCceeEEEec--ccEEEeeccC--------CcEEEEEeecceeehhhcCCc--ceeEEecC
Confidence 6788888888889999886 5578999998 999999999999988888874 66665663
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=187.11 Aligned_cols=234 Identities=13% Similarity=0.146 Sum_probs=185.2
Q ss_pred eecccccCccccccccCCCC--CCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~--~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
+.+.+.++.++.|+...... .......+..|...|+.+....... .+++++.|-+|++|+..
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~------------ 103 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAH------------ 103 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecc------------
Confidence 55566778888888755332 1234667888999888776555554 79999999999994433
Q ss_pred ccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEECCCcEEEEECCCC--ceEEEE--------e-ccCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVM--------H-HHVAP 623 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~-spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg--~~l~~~--------~-~H~~~ 623 (1471)
....-+..++..|++.|.|+++ .++ ..+++|||-|+.|.+||+++| ++++++ . ++..+
T Consensus 104 -~~~~~c~stir~H~DYVkcla~~ak~---------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 104 -KDNTFCMSTIRTHKDYVKCLAYIAKN---------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -cCcchhHhhhhcccchheeeeecccC---------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 1111456778899999999999 544 789999999999999999988 333333 2 78889
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000473 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1471)
Q Consensus 624 V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~V 703 (1471)
|.+++.++. |..|++|+..+.+++||.++++.+..+.||..-|.++..++||..+++++.| |+|++
T Consensus 174 iYSLA~N~t------~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD--------gtIrl 239 (735)
T KOG0308|consen 174 IYSLAMNQT------GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD--------GTIRL 239 (735)
T ss_pred eeeeecCCc------ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC--------ceEEe
Confidence 999999998 8899999999999999999999999999999999999999999999999998 99999
Q ss_pred EECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccc
Q 000473 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1471)
Q Consensus 704 WDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~ 768 (1471)
||+...+++.++..|...|...+..+. -..++.-.+|+.+..=+|+++
T Consensus 240 WdLgqQrCl~T~~vH~e~VWaL~~~~s-----------------f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGVWALQSSPS-----------------FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceeeeEEeccCceEEEeeCCC-----------------cceEEecCCCCcEEecccCCc
Confidence 999999999999999988877633211 112334455777777666654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=159.40 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=70.1
Q ss_pred CCCCCceEEEEEEcCC-CCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccc
Q 000473 12 GTPPSHRVTATSALTQ-PPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1471)
Q Consensus 12 ~~~p~h~Vtava~SpD-g~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~ 90 (1471)
+.||...|++++|||. ...++.||.||+|++|++.. .+...++ ....|.++|.+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--~g~~~~k-a~~~~~~PvL~v~-------------------- 79 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN--SGQLVPK-AQQSHDGPVLDVC-------------------- 79 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEec--CCcccch-hhhccCCCeEEEE--------------------
Confidence 4688999999999994 45666899999999999984 2334443 3467999999998
Q ss_pred cccccccccCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 000473 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1471)
Q Consensus 91 ~~~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~ 126 (1471)
++.|+..+++|+.|+++++||+.+|+...
T Consensus 80 -------WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 80 -------WSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred -------EccCCceEEeeccCCceEEEEccCCCeee
Confidence 67788889999999999999999996553
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-17 Score=192.53 Aligned_cols=185 Identities=20% Similarity=0.230 Sum_probs=166.7
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
..+.+|...|.|+.+..... .++.|..+|+|++ | |++..+.+++|.||...+..|.|+|-
T Consensus 64 ~S~~~hespIeSl~f~~~E~----LlaagsasgtiK~--w-------------DleeAk~vrtLtgh~~~~~sv~f~P~- 123 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSER----LLAAGSASGTIKV--W-------------DLEEAKIVRTLTGHLLNITSVDFHPY- 123 (825)
T ss_pred heeeccCCcceeeecCcchh----hhcccccCCceee--e-------------ehhhhhhhhhhhccccCcceeeeccc-
Confidence 34789999999988444443 7999999999999 4 45566778899999999999999995
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
+.+.++|+.|+.+++||++...|.+.+.+|...|..+.|+|+ |.+++++++|.++++||+..|+..
T Consensus 124 --------~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 124 --------GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred --------eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeecccccccc
Confidence 888999999999999999988899999999999999999999 999999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeee
Q 000473 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
..|.+|...+..+.|+|.+-.+++|+.| ++|++||++|.+.+....+....+.+..|.+
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~d--------~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAPGSSD--------RTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccccccccccCchhhhhccCCCC--------ceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 9999999999999999999999998888 9999999999999888887777777776764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=169.94 Aligned_cols=223 Identities=17% Similarity=0.249 Sum_probs=167.9
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCC--CCccccCC-cceEEEEecCCccEEEE
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP--GASLKVNS-HVSRQYFLGHTGAVLCL 576 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~--~~~~d~~s-~~~~~~l~gH~~~V~~l 576 (1471)
.+...+..|...+.+.++.++.. .+++|+.|.+|+|.+...+.....+ ...-+.+. ...+++|..|.+.|++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 44455678888888888555554 7999999999999654321111000 00111222 36789999999999999
Q ss_pred EEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000473 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1471)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~--~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lW 654 (1471)
.|||. ...|+||+.|++|+++|+......+.|+ ....+|.++.|+|. |.+++.|.+-.+++||
T Consensus 179 ~FHPr---------e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 179 DFHPR---------ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLY 243 (430)
T ss_pred eecch---------hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEE
Confidence 99997 8999999999999999997543322222 34568999999998 9999999999999999
Q ss_pred ECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCCceee-eeee
Q 000473 655 SLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFD-HFCK 729 (1471)
Q Consensus 655 dl~t~~~l~~~---~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~-gH~~~v~~~-~~~~ 729 (1471)
|+++.+|.... .+|.+.|++|.+++.+++-++|+.| |.|++||--+++|++++. .|.+..++. .|.+
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 99999987654 3688999999999999999999999 999999999999998874 677655553 3441
Q ss_pred ccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
+|.+. ++...|.+++.|.+.
T Consensus 316 ------------n~kyi-----LsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 316 ------------NGKYI-----LSSGKDSTVKLWEIS 335 (430)
T ss_pred ------------CCeEE-----eecCCcceeeeeeec
Confidence 22332 333348889999873
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=159.55 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=169.3
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
+++|+.+++.+.|..+.. .|.+++.|.+..||.- ..|+.+-++.||++.|+|++..-+
T Consensus 6 l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~s---------------~nGerlGty~GHtGavW~~Did~~--- 63 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWYS---------------LNGERLGTYDGHTGAVWCCDIDWD--- 63 (327)
T ss_pred cccCccccceEEecCCCc----EEEEecCCCCceEEEe---------------cCCceeeeecCCCceEEEEEecCC---
Confidence 578999999999776665 8999999999999432 246788999999999999999876
Q ss_pred cccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-----CCcEEEEECC--
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-- 657 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~-----DgsV~lWdl~-- 657 (1471)
..++++|+.|.++++||+.+|+.+..++. ..+|..+.|+++ |++++...+ -+.|.++|++
T Consensus 64 ------s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 64 ------SKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ------cceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccCC
Confidence 79999999999999999999999998864 458999999998 776665543 3678999998
Q ss_pred -----CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeeecc
Q 000473 658 -----TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 731 (1471)
Q Consensus 658 -----t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~v~~~~~~~~~ 731 (1471)
..++...++.+.+.++.+.|.|-+++|++|..| |.|.+||+++| +.+....-|.+.+.-+++.+..
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~--------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~ 202 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED--------GSISIYDARTGKELVDSDEEHSSKINDLQFSRDR 202 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC--------CcEEEEEcccCceeeechhhhccccccccccCCc
Confidence 456788889999999999999999999999999 99999999998 4567778888877777666432
Q ss_pred ccccccceEEcCCccccccceeeccCCceEeecccccc
Q 000473 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
. .+++.+.|.+.+.|+...++
T Consensus 203 T-----------------~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 203 T-----------------YFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred c-----------------eEEecccCccceeeecccee
Confidence 2 23455668888888865443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-12 Score=147.35 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=108.1
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000473 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1471)
Q Consensus 564 ~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~ 643 (1471)
....||.+..+.++.||+ .+.+++++.|+.+++|+ ..+++.+.. -..++.++.|+|. | .++
T Consensus 362 ~~v~gh~delwgla~hps---------~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps------g-~va 422 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPS---------KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS------G-VVA 422 (626)
T ss_pred EEEEecccceeeEEcCCC---------hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc------c-eEE
Confidence 455799999999999997 78999999999999999 445544332 3468899999998 7 999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC-CC
Q 000473 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTA-SH 721 (1471)
Q Consensus 644 S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~-~~ 721 (1471)
.|...|...+.|.++...+..-.. ..++++|+|+|+|.+|++|+.| +.||||-+.. |.....+.-|+ +.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k~~gs~ 493 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGKCSGSP 493 (626)
T ss_pred EeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeeeecCce
Confidence 999999999999998655544443 7889999999999999999999 9999999864 55544443333 44
Q ss_pred ceeeeee
Q 000473 722 SMFDHFC 728 (1471)
Q Consensus 722 v~~~~~~ 728 (1471)
++-.+|.
T Consensus 494 ithLDwS 500 (626)
T KOG2106|consen 494 ITHLDWS 500 (626)
T ss_pred eEEeeec
Confidence 4445555
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=163.26 Aligned_cols=210 Identities=13% Similarity=0.211 Sum_probs=165.4
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEE----ecccccC-----
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQ----FDLFERH----- 548 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~----~~~l~~~----- 548 (1471)
+.+.+.+-+.++|.++. |.|...+.+|.+.|+++.+.+... .+++|+.|++-.||. |..-...
T Consensus 163 ~gtASADhTA~iWs~Es----g~CL~~Y~GH~GSVNsikfh~s~~----L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 163 CGTASADHTARIWSLES----GACLATYTGHTGSVNSIKFHNSGL----LLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred eeecccccceeEEeecc----ccceeeecccccceeeEEeccccc----eEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 44566778899999987 467788899999999999544443 789999999999975 3221100
Q ss_pred ---------CCCCCccc--c-CC----cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc
Q 000473 549 ---------NSPGASLK--V-NS----HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1471)
Q Consensus 549 ---------d~~~~~~d--~-~s----~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~ 612 (1471)
|.+.+.-+ . .. ..++..|.||.+.|.+..|-.. ++.++++|+|.+..+||+++|+
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g---------g~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG---------GQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC---------cceeeeeeccccceeeeeccCc
Confidence 11111001 0 01 1356678999999999999764 8999999999999999999999
Q ss_pred eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000473 613 LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1471)
Q Consensus 613 ~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~ 691 (1471)
.++.+.+|....+.+.-+|. .+++++.+.|.+.++||.+.. ..+..|.||...|+++.|.-+. .+++|+.|
T Consensus 306 ~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDD- 377 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDD- 377 (481)
T ss_pred eeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCC-
Confidence 99999999999998888887 899999999999999999853 4578899999999999998765 46788887
Q ss_pred CCCCCCCCEEEEEECCCCe-EEEEEeCCC
Q 000473 692 SRTSDAVDVLFIWDVKTGA-RERVLRGTA 719 (1471)
Q Consensus 692 sg~~D~~gtV~VWDi~tg~-~~~~l~gH~ 719 (1471)
.+|+|||+++.+ .+.++.-.+
T Consensus 378 -------rTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 378 -------RTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred -------ceEEEeeeccccCcceeeecCC
Confidence 999999998754 566666443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=162.54 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=157.3
Q ss_pred CCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEECCCcE
Q 000473 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDCSI 603 (1471)
Q Consensus 525 P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~-spd~~~~~~~~~~~~L~SGs~DgtI 603 (1471)
-.+|++++.|++|+|+.-. . +. ..+.+.+|.||.++|+.++| ||. +|.+|+|++.||.|
T Consensus 23 gkrlATcsSD~tVkIf~v~--~---------n~-~s~ll~~L~Gh~GPVwqv~wahPk--------~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVR--N---------NG-QSKLLAELTGHSGPVWKVAWAHPK--------FGTILASCSYDGKV 82 (299)
T ss_pred cceeeeecCCccEEEEEEc--C---------CC-CceeeeEecCCCCCeeEEeecccc--------cCcEeeEeecCceE
Confidence 3489999999999994332 0 11 12678899999999999999 665 59999999999999
Q ss_pred EEEECCCCc--eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEEEc
Q 000473 604 RIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 604 ~lWDl~tg~--~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~---~~l~~~~gh~~~V~~v~~s 678 (1471)
.+|.-..|+ ..+.+..|...|++++|.|.+ -|-.|++++.||.|.|.+.++. ...+....|...|++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~waphe----ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHE----YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccc----cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 999988775 346677899999999999973 2668999999999999998754 2234556799999999999
Q ss_pred CC---C-----------CEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEEEEeCCCCCceeeeeeeccccccccceEEc
Q 000473 679 CP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSVLN 742 (1471)
Q Consensus 679 pd---g-----------~~L~sgs~D~sg~~D~~gtV~VWDi~tg--~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~ 742 (1471)
|. | +.|++|+.| ..|+||+..++ .++++|.+|..-|--+.+||.+.
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcD--------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g---------- 220 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCD--------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG---------- 220 (299)
T ss_pred CcCCCccccccCcccccceeeccCCc--------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccC----------
Confidence 87 4 569999998 99999999876 46788999999888888886432
Q ss_pred CCccccccceeeccCCceEeecc
Q 000473 743 GNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 743 g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
.....+.++++|+++-+|..
T Consensus 221 ---l~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 221 ---LPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred ---CCceeeEEecCCCcEEEEEe
Confidence 22344567778999999974
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=162.04 Aligned_cols=220 Identities=19% Similarity=0.251 Sum_probs=174.7
Q ss_pred cccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000473 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1471)
Q Consensus 480 ~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1471)
..+.+=+.++|+... |....+|. |.-.|.++++..+.. .|++|+.+.-++|++.+. .
T Consensus 76 saaadftakvw~a~t----gdelhsf~-hkhivk~~af~~ds~----~lltgg~ekllrvfdln~--------------p 132 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVT----GDELHSFE-HKHIVKAVAFSQDSN----YLLTGGQEKLLRVFDLNR--------------P 132 (334)
T ss_pred hhcccchhhhhhhhh----hhhhhhhh-hhheeeeEEecccch----hhhccchHHHhhhhhccC--------------C
Confidence 334556789999876 34555543 667788888666665 799999999999954441 1
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000473 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 560 ~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
..+...+.||++.|..+.|... .+.++|.+.|++||+||.++|..++++.- ..+|+++.++++ |
T Consensus 133 ~App~E~~ghtg~Ir~v~wc~e---------D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~d------G 196 (334)
T KOG0278|consen 133 KAPPKEISGHTGGIRTVLWCHE---------DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQD------G 196 (334)
T ss_pred CCCchhhcCCCCcceeEEEecc---------CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccC------C
Confidence 1334567899999999999775 67888889999999999999999988854 457999999998 6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE-eCC
Q 000473 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGT 718 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l-~gH 718 (1471)
++ ++.+.-++|++||..+...+..+.. +..|.+...+|+..++++|+.| ..++.||..||+.+..+ .||
T Consensus 197 ~i-lTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged--------~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 197 RI-LTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGED--------FKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred CE-EEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcc--------eEEEEEeccCCceeeecccCC
Confidence 64 5666788999999999998888764 3458899999999999999999 99999999999998886 999
Q ss_pred CCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
-+.|-++.|.|. |..-.++ ++||++|+|+.
T Consensus 267 ~gpVhcVrFSPd------------GE~yAsG-----SEDGTirlWQt 296 (334)
T KOG0278|consen 267 FGPVHCVRFSPD------------GELYASG-----SEDGTIRLWQT 296 (334)
T ss_pred CCceEEEEECCC------------Cceeecc-----CCCceEEEEEe
Confidence 999999999952 2222222 34999999974
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=169.44 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=157.6
Q ss_pred CccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000473 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1471)
Q Consensus 485 ~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1471)
..+-++|... .+....+.||...|+++.+.+... .+++++.|-.|+||... ......
T Consensus 241 ~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~---------------~~s~~~ 297 (506)
T KOG0289|consen 241 KTAVLFDKPS----NQILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVP---------------LSSEPT 297 (506)
T ss_pred CceEEEecch----hhhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccc---------------cccCcc
Confidence 3444444333 467788999999999998444443 78999999999994322 122345
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc--CCCEEEEEECCCCCCCCCCCEE
Q 000473 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 565 ~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H--~~~V~~l~fspd~~~~~~~~~l 642 (1471)
....|.++|+.+..||. +.+|++++.|++..+-|+.+|..+...... .-.+++.+|+|| |..|
T Consensus 298 ~~~~h~~~V~~ls~h~t---------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gLif 362 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPT---------GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GLIF 362 (506)
T ss_pred ccccccccceeeeeccC---------CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ceEE
Confidence 56789999999999997 899999999999999999999988776553 235899999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000473 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 643 ~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~ 719 (1471)
.+|..|+.|++||+.++..+..|++|.++|..++|+.+|=||++++.| +.|++||++.-+..+++.-..
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhcccceeeccc
Confidence 999999999999999999999999999999999999999999999999 899999998877666665444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=169.47 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=168.7
Q ss_pred cEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcC
Q 000473 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1471)
Q Consensus 511 ~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~ 590 (1471)
.++++..++... .+.+|+.|....+++ ..+++.+.+|.||+..|+.+.++++
T Consensus 221 gi~ald~~~s~~----~ilTGG~d~~av~~d---------------~~s~q~l~~~~Gh~kki~~v~~~~~--------- 272 (506)
T KOG0289|consen 221 GITALDIIPSSS----KILTGGEDKTAVLFD---------------KPSNQILATLKGHTKKITSVKFHKD--------- 272 (506)
T ss_pred CeeEEeecCCCC----cceecCCCCceEEEe---------------cchhhhhhhccCcceEEEEEEeccc---------
Confidence 466655555423 689999998888833 4456778899999999999999997
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC-
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP- 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~- 669 (1471)
...+++++.|..|++|.............|.++|+.+..+|. |.+|++++.|++..+.|+++++++.......
T Consensus 273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred hhheeecCCcceEEeeccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeeccc
Confidence 788999999999999999888888888899999999999998 9999999999999999999999987765322
Q ss_pred -CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCcccc
Q 000473 670 -NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVS 748 (1471)
Q Consensus 670 -~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s 748 (1471)
-.+++.+|+|||..+.+|..| |.|+|||+.++.....+.||++.|..+.|.. +|-+
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d--------~~vkiwdlks~~~~a~Fpght~~vk~i~FsE------------NGY~--- 403 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPD--------GVVKIWDLKSQTNVAKFPGHTGPVKAISFSE------------NGYW--- 403 (506)
T ss_pred cceeEEeeEcCCceEEeccCCC--------ceEEEEEcCCccccccCCCCCCceeEEEecc------------CceE---
Confidence 357999999999999999998 9999999999999999999999999998882 2223
Q ss_pred ccceeeccCCceEeecccccc
Q 000473 749 SLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 749 ~~l~~~~~D~tir~w~l~~~~ 769 (1471)
+...+.|+.++.|+|++.+
T Consensus 404 --Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 404 --LATAADDGSVKLWDLRKLK 422 (506)
T ss_pred --EEEEecCCeEEEEEehhhc
Confidence 2344457779999997655
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=168.95 Aligned_cols=168 Identities=24% Similarity=0.296 Sum_probs=132.9
Q ss_pred CccccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEE
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~l 576 (1471)
....++.+|...=.++. |+|. .+++|-.-+.|++ |..-. ..|.++ .+.|.+|+..|-.|
T Consensus 202 ~Pl~t~~ghk~EGy~Ld------WSp~~~g~LlsGDc~~~I~l--w~~~~------g~W~vd----~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLD------WSPIKTGRLLSGDCVKGIHL--WEPST------GSWKVD----QRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeee------cccccccccccCccccceEe--eeecc------Cceeec----Cccccccccchhhh
Confidence 45566778877766666 5663 5777766677777 44211 135543 24467899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000473 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1471)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg---~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~l 653 (1471)
+|+|.+ ...|+|||.|++|+|||++.+ .++.+ +.|.+.|..|.|+.+ -.+|++|+.||+++|
T Consensus 264 qWSptE--------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~------~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 264 QWSPTE--------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR------EPLLASGGDDGTLSI 328 (440)
T ss_pred ccCCcc--------CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC------cceeeecCCCceEEE
Confidence 999973 789999999999999999988 34444 889999999999987 459999999999999
Q ss_pred EECCC---CcEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 654 ASLET---LRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 654 Wdl~t---~~~l~~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
||++. ++++..|..|..+|++|.|+|... .|++++.| ..|.+||+..
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv 379 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV 379 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence 99975 678899999999999999999754 66677777 8999999853
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=185.23 Aligned_cols=190 Identities=23% Similarity=0.286 Sum_probs=158.8
Q ss_pred CccEEEEEeeccccccCCEEEEEE--cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs--~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~ 586 (1471)
...|.++.+.++.. ++++|+ .||.++||+-+.+.. ....++..-.+.+.+...|.+.|+|+.|+||
T Consensus 13 ~~~IfSIdv~pdg~----~~aTgGq~~d~~~~iW~~~~vl~---~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d----- 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV----KFATGGQVLDGGIVIWSQDPVLD---EKEEKNENLPKHLCTMDDHDGSVNCVRFSPD----- 80 (942)
T ss_pred CeeEEEEEecCCce----eEecCCccccccceeeccccccc---hhhhhhcccchhheeeccccCceeEEEECCC-----
Confidence 44577777555555 899999 899999966543221 1112333224556778899999999999998
Q ss_pred cCcCCCEEEEEECCCcEEEEECCC------------------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 587 ~~~~~~~L~SGs~DgtI~lWDl~t------------------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D 648 (1471)
+++|++||+|+.|.+|+... ++....+.+|.+.|..+.|+|+ +.+++|++.|
T Consensus 81 ----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS~s~D 150 (942)
T KOG0973|consen 81 ----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVSVSLD 150 (942)
T ss_pred ----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEEeccc
Confidence 99999999999999999772 2367789999999999999999 9999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 649 gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
++|.+||.++.+++..+.+|.+.|..+.|+|-|+||++-+.| ++|+||++.+...++.++++-.++..-.+.
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD--------rtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD--------RTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC--------ceEEEEEcccceeeEeeccchhhCCCccee
Confidence 999999999999999999999999999999999999999999 999999988888999999998777664443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=167.96 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=177.8
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
......+.+.+|.+.. |.+...+.+|-..|||+.+..+.. .+++|+.||.|.+|....+...+.. .
T Consensus 97 ~ag~i~g~lYlWelss----G~LL~v~~aHYQ~ITcL~fs~dgs----~iiTgskDg~V~vW~l~~lv~a~~~------~ 162 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSS----GILLNVLSAHYQSITCLKFSDDGS----HIITGSKDGAVLVWLLTDLVSADND------H 162 (476)
T ss_pred EeecccCcEEEEEecc----ccHHHHHHhhccceeEEEEeCCCc----EEEecCCCccEEEEEEEeecccccC------C
Confidence 3344667788898776 577888899999999999777776 7999999999999776555543221 1
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+.++.+.|.+|+-+|+.+...+. + ...+++|.|.|.++++||+..|.++.++. ...++.++++.|.
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~G-----g--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------ 228 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSG-----G--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------ 228 (476)
T ss_pred CccceeeeccCcceeEEEEecCC-----C--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------
Confidence 45788999999999999998764 1 25799999999999999999999988774 4568999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCC----------------cEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCE
Q 000473 639 SDCFLSVGEDFSVALASLETL----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~----------------~~l~~~~gh~~--~V~~v~~spdg~~L~sgs~D~sg~~D~~gt 700 (1471)
...+..|+.||.|.+.++... ..+..+.||.+ .|+|++.+-||..|++|+.| |.
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~ 300 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GK 300 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CC
Confidence 789999999999998887432 35667889988 99999999999999999999 99
Q ss_pred EEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 701 LFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 701 V~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
|.|||+.+.+++|++..-.+.|...++.
T Consensus 301 VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 301 VCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred EEEEecchHHHHHHHhhhccccceeEee
Confidence 9999999999999998767777777654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-14 Score=155.25 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=153.5
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEc--CCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF--SGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~--DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
+.+++.+.+++++|..+.+. ..++..+.-.+....+.. +++.++.++. |.+|+...
T Consensus 29 litss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth----~~~~~i~sStk~d~tIryLs-------------- 86 (311)
T KOG1446|consen 29 LITSSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTH----HSNTVIHSSTKEDDTIRYLS-------------- 86 (311)
T ss_pred EEEecCCCeEEEEEcCCCce----eeEeecccccccEEEEec----CCceEEEccCCCCCceEEEE--------------
Confidence 45566777899999887544 233333323333333332 2336777776 77888732
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc---------------
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--------------- 620 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H--------------- 620 (1471)
+.+.+.++.|.||...|+.|..+|. ++.++|+|.|++|++||++..++...+..-
T Consensus 87 -l~dNkylRYF~GH~~~V~sL~~sP~---------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 87 -LHDNKYLRYFPGHKKRVNSLSVSPK---------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred -eecCceEEEcCCCCceEEEEEecCC---------CCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence 3456899999999999999999997 799999999999999999965544332211
Q ss_pred ------------------------------CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 621 ------------------------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 621 ------------------------------~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
....+.+.|+|+ |++++-....+.+.+.|--+|..+..+.++..
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d------GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD------GKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC------CCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 233456667776 77777777777777777777787788877765
Q ss_pred Cc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCCceeeeeeec
Q 000473 671 YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG-TASHSMFDHFCKG 730 (1471)
Q Consensus 671 ~V---~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g-H~~~v~~~~~~~~ 730 (1471)
.- ....|+||++++++|+.| |+|++|++++|..+..+.| +...+.+++|.|.
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~d--------g~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDD--------GTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCC--------CcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 32 678999999999999988 9999999999999999999 6888888877753
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=162.63 Aligned_cols=177 Identities=16% Similarity=0.266 Sum_probs=147.8
Q ss_pred CccccccccCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la 577 (1471)
..+.++-.|...|+++. |+|. .|++|+.|++|+++++.. ..-.+..++| .-...|.++.
T Consensus 163 PvIRTlYDH~devn~l~------FHPre~ILiS~srD~tvKlFDfsK------------~saKrA~K~~-qd~~~vrsiS 223 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLD------FHPRETILISGSRDNTVKLFDFSK------------TSAKRAFKVF-QDTEPVRSIS 223 (430)
T ss_pred ceEeehhhccCccccee------ecchhheEEeccCCCeEEEEeccc------------HHHHHHHHHh-hccceeeeEe
Confidence 35567788999999988 6665 899999999999966541 0001122222 2356799999
Q ss_pred EecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEE---EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000473 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV---MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1471)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~---~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lW 654 (1471)
|||. |.+|+.|....+++++|+++-++... -.+|++.|+++.+++. +...++++.||.|+||
T Consensus 224 fHPs---------GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 224 FHPS---------GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLW 288 (430)
T ss_pred ecCC---------CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEee
Confidence 9996 99999999999999999999887643 2469999999999998 9999999999999999
Q ss_pred ECCCCcEEEEec-CCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 655 SLETLRVERMFP-GHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 655 dl~t~~~l~~~~-gh~~-~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
|--+++|++++. .|.+ .|.+..|..+++|+++.+.| ..|++|++.||+++.++.|.
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D--------S~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD--------STVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc--------ceeeeeeecCCceEEEEecC
Confidence 999999998885 4544 78999999999999999999 99999999999999999876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=147.06 Aligned_cols=216 Identities=18% Similarity=0.174 Sum_probs=168.9
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc----cccC-------C------------------------
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL----FERH-------N------------------------ 549 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~----l~~~-------d------------------------ 549 (1471)
-+.|.+.|.|.++.++.. .+++|+.|.+|++.+++. +.+. |
T Consensus 85 ~khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred ccccCccEEEEEecCccC----eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 367889999998666665 899999999999976631 0000 0
Q ss_pred --CCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec--c-----
Q 000473 550 --SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H----- 620 (1471)
Q Consensus 550 --~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~--H----- 620 (1471)
.....-|...++..+.+.||++-|.++- += ++-.++||+.|.+|++||++-..++.++.. |
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilaly-sw---------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALY-SW---------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEE-Ee---------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 0001224556777888899999998874 21 278999999999999999998888876643 2
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCE
Q 000473 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1471)
Q Consensus 621 ~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gt 700 (1471)
...|.++++.|. |+.+++|-.|.+..+||++.+++++.|..|...|.+|.|+|...||++++.| ..
T Consensus 231 ssavaav~vdps------grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd--------~~ 296 (350)
T KOG0641|consen 231 SSAVAAVAVDPS------GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD--------MK 296 (350)
T ss_pred cceeEEEEECCC------cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc--------ce
Confidence 257999999998 9999999999999999999999999999999999999999999999999998 89
Q ss_pred EEEEECCCC----eEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 701 LFIWDVKTG----ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 701 V~VWDi~tg----~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
|++-|++.- -.+.+...|...++...+.+.. -++++.+.|.+.-.|-+
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-----------------~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-----------------FSFISSSADKTATLWAL 348 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCcc-----------------ceeeeccCcceEEEecc
Confidence 999998631 2356667898888888777421 12345566889989865
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-15 Score=167.68 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=150.0
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCcccc------CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC
Q 000473 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKV------NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1471)
Q Consensus 526 ~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~------~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~ 599 (1471)
++++.|+.|-.|.||+.+.....-....+-.. ..++.-..-.||++.|..|+|... ..+.|+|||.
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~--------~~nVLaSgsa 264 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN--------FRNVLASGSA 264 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc--------cceeEEecCC
Confidence 47999999999999766532211000000000 011111123479999999998765 4789999999
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000473 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 600 DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~sp 679 (1471)
|.+|++||+.+|++..++..|++.|.++.|+|.. ...+++|+.|++|+|.|.+........-...+.|..++|.|
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDP 339 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecC
Confidence 9999999999999999999999999999999986 78999999999999999985332221122346799999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCC
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1471)
Q Consensus 680 dg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ 758 (1471)
.....+..+.| ||+||-+|++. |+++.++..|.+.+-.+.+.. ...+.+.+.+.|+
T Consensus 340 ~se~~f~~~td-------dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~----------------~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 340 HSENSFFVSTD-------DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI----------------QTPGLLSTASTDK 396 (463)
T ss_pred CCceeEEEecC-------CceEEeeecCCCCCceeEEEeccCCcceEEecC----------------CCCcceeeccccc
Confidence 87655444444 29999999997 599999999998777764431 1233344556699
Q ss_pred ceEeeccc
Q 000473 759 TFRQSQIQ 766 (1471)
Q Consensus 759 tir~w~l~ 766 (1471)
.++.|++.
T Consensus 397 ~Vklw~~~ 404 (463)
T KOG0270|consen 397 VVKLWKFD 404 (463)
T ss_pred eEEEEeec
Confidence 99999874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-12 Score=149.86 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=79.2
Q ss_pred ccCCCCEEEEEeCCCeEEEEEcCCCeEEEe-eeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccccccccc
Q 000473 98 SSLDNGALISACTDGVLCVWSRSSGHCRRR-RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1471)
Q Consensus 98 ~s~d~~~LaSas~DG~I~VWdv~~G~ci~~-~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~ 176 (1471)
++.+...||-+-+||.|.+|++..+=+.+. +..| ......-....+.+||+.+|..
T Consensus 33 ~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~RLFS~g~s--------------------- 89 (691)
T KOG2048|consen 33 YSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGRLFSSGLS--------------------- 89 (691)
T ss_pred EeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCeEEeecCC---------------------
Confidence 466666799999999999999998755543 3332 1222333345588999999887
Q ss_pred ccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCC
Q 000473 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1471)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~ 250 (1471)
+.|.-||+.+++.+..... ..+.|..+++.|. + ..+.++..||.+...++..+
T Consensus 90 -------------g~i~EwDl~~lk~~~~~d~---~gg~IWsiai~p~---~--~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 90 -------------GSITEWDLHTLKQKYNIDS---NGGAIWSIAINPE---N--TILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred -------------ceEEEEecccCceeEEecC---CCcceeEEEeCCc---c--ceEEeecCCceEEEEecCCc
Confidence 9999999999999988765 3455999998743 2 44777778997766666554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=163.31 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=146.8
Q ss_pred eecccccCccccccccCCCCCCCccccc--cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF--VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~--~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
+.+++.++++++|++.+.+...+....- .+.+..++++++.++.. .++.|+.||+|.+|+.. .|
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~----~iAagc~DGSIQ~W~~~----------~~ 349 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK----LIAAGCLDGSIQIWDKG----------SR 349 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc----hhhhcccCCceeeeecC----------Cc
Confidence 4556677788888888876543332222 23345566666333333 79999999999994432 12
Q ss_pred ccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-ceEEEEecc--CCCEEEEEEC
Q 000473 556 KVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHH--VAPVRQIILS 630 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~--~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-~~l~~~~~H--~~~V~~l~fs 630 (1471)
-+. ..+..-..|.. .|+|+.|++| +++|+|-|.|.++++||++.. +++.++.+- .-+-+.++|+
T Consensus 350 ~v~--p~~~vk~AH~~g~~Itsi~FS~d---------g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 350 TVR--PVMKVKDAHLPGQDITSISFSYD---------GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ccc--cceEeeeccCCCCceeEEEeccc---------cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 221 33444567887 8999999998 999999999999999999864 456555442 2345678999
Q ss_pred CCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000473 631 PPQTEHPWSDCFLSVGE------DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1471)
Q Consensus 631 pd~~~~~~~~~l~S~s~------DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW 704 (1471)
|+ .+++++|.. -+++.++|-.+...++.+.-....|..+.|+|-=+.|++|+.| |+++||
T Consensus 419 Pd------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd--------G~~~vy 484 (641)
T KOG0772|consen 419 PD------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD--------GTAHVY 484 (641)
T ss_pred CC------ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC--------CceEEE
Confidence 99 889998854 4789999999999998887778889999999999999999998 999987
Q ss_pred ECCC----CeEEEEEeCCC
Q 000473 705 DVKT----GARERVLRGTA 719 (1471)
Q Consensus 705 Di~t----g~~~~~l~gH~ 719 (1471)
==.+ |.++.+...|.
T Consensus 485 Ydp~~S~RGak~cv~k~~r 503 (641)
T KOG0772|consen 485 YDPNESIRGAKLCVVKPPR 503 (641)
T ss_pred ECccccccchhheeecCcc
Confidence 4332 44445555444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=157.14 Aligned_cols=185 Identities=19% Similarity=0.215 Sum_probs=152.2
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
+.+|...|.+++...+.. ++++|+.|+++.||+.+.+ ........+||++.|-.++|+|.+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~-------------r~~~~~~~~gh~~svdql~w~~~~-- 76 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERD-------------RFRKELVYRGHTDSVDQLCWDPKH-- 76 (313)
T ss_pred hhhhhhcceEEEEcccCc----eeeecccCCceEEEEecch-------------hhhhhhcccCCCcchhhheeCCCC--
Confidence 567888899998777777 8999999999999655411 112223457999999999999873
Q ss_pred cccCcCCCEEEEEECCCcEEEEECCCCceEE-------------------------------------------------
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT------------------------------------------------- 615 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~------------------------------------------------- 615 (1471)
...+++++.|.+|++||++++++..
T Consensus 77 ------~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ 150 (313)
T KOG1407|consen 77 ------PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV 150 (313)
T ss_pred ------CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee
Confidence 7899999999999999998665332
Q ss_pred ---------------------------------EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 616 ---------------------------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 616 ---------------------------------~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
.++.|.....|+.|+|+ |++||+|+.|..|-|||++..-|+
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------GRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC------CceEeeccccceeeccChhHhhhh
Confidence 24456667778888888 999999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeee
Q 000473 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
+.+..+.-+|..+.|+.||++|++|++| ..|-|=+++||..+..+. +.+....+.+.|
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSED--------h~IDIA~vetGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASED--------HFIDIAEVETGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCcc--------ceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence 9999999999999999999999999999 899999999999888775 334444555554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=161.49 Aligned_cols=201 Identities=17% Similarity=0.217 Sum_probs=158.1
Q ss_pred EEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
..++-++.|.+.||........ ..++..-.....+++.++.+|.+.=+.|+|+|-. ...|+||..-+.|++
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~--------~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK--------TGRLLSGDCVKGIHL 238 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc--------ccccccCccccceEe
Confidence 5677788999999654321111 1111111113347889999999999999999951 456899999999999
Q ss_pred EECCCCceE---EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEEEcC
Q 000473 606 WDLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 606 WDl~tg~~l---~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~---~~l~~~~gh~~~V~~v~~sp 679 (1471)
|...+|... ..|.+|+..|..|.|+|.+ ...|+|||.||+|+|||++.+ .++.. ..|.+.|+.|.|+.
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR 312 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence 999987754 4677899999999999986 779999999999999999988 45444 78999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC---CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeecc
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHE 756 (1471)
Q Consensus 680 dg~~L~sgs~D~sg~~D~~gtV~VWDi~t---g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~ 756 (1471)
...+|++|+.| |+++|||+++ ++++..+.-|.++++++.|.|... +. +....+
T Consensus 313 ~~~lLasG~Dd--------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~-----s~-----------iaasg~ 368 (440)
T KOG0302|consen 313 REPLLASGGDD--------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED-----SV-----------IAASGE 368 (440)
T ss_pred CcceeeecCCC--------ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----ce-----------EEeccC
Confidence 99999999988 9999999986 678899999999999999985311 11 223345
Q ss_pred CCceEeecc
Q 000473 757 DGTFRQSQI 765 (1471)
Q Consensus 757 D~tir~w~l 765 (1471)
|.++-+|+|
T Consensus 369 D~QitiWDl 377 (440)
T KOG0302|consen 369 DNQITIWDL 377 (440)
T ss_pred CCcEEEEEe
Confidence 999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=163.33 Aligned_cols=223 Identities=15% Similarity=0.160 Sum_probs=173.0
Q ss_pred cccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000473 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1471)
Q Consensus 482 ~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1471)
.....+.+|.+..... ..+. ..-++.|.|+.-.++.. .++.|...|.|.+ |.+.+|.
T Consensus 58 ~~rp~l~vw~i~k~~~---~~q~-~v~Pg~v~al~s~n~G~----~l~ag~i~g~lYl---------------WelssG~ 114 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQ---VVQY-IVLPGPVHALASSNLGY----FLLAGTISGNLYL---------------WELSSGI 114 (476)
T ss_pred ccCccccccccCchhh---hhhh-cccccceeeeecCCCce----EEEeecccCcEEE---------------EEecccc
Confidence 3344678888765432 1111 12356788877555554 5777779999999 3456788
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC---------CCceEEEEeccCCCEEEEEECCC
Q 000473 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPP 632 (1471)
Q Consensus 562 ~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~---------tg~~l~~~~~H~~~V~~l~fspd 632 (1471)
.+..+.+|-..|+|+.|+-| +.+|+|||.||.|.+|++. +-++++.|..|+-+|+.+...+.
T Consensus 115 LL~v~~aHYQ~ITcL~fs~d---------gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDD---------GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred HHHHHHhhccceeEEEEeCC---------CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCC
Confidence 88889999999999999987 8999999999999999874 34678999999999999998775
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC----
Q 000473 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT---- 708 (1471)
Q Consensus 633 ~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t---- 708 (1471)
. ....++|+|.|+++++||+..+..+..+. ....+.+++.+|.++.+.+|..+ |.|.+-++.+
T Consensus 186 g----~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~--------G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 186 G----TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE--------GKIFQNLLFKLSGQ 252 (476)
T ss_pred C----ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc--------ceEEeeehhcCCcc
Confidence 2 14589999999999999999999888775 45679999999999999999999 9999988753
Q ss_pred ------------CeEEEEEeCCCC--CceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 709 ------------GARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 709 ------------g~~~~~l~gH~~--~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
+..++.+.||.. .+++...| .+|+...++ .+||++++|++.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais------------~DgtlLlSG-----d~dg~VcvWdi~ 307 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAIS------------TDGTLLLSG-----DEDGKVCVWDIY 307 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEe------------cCccEEEee-----CCCCCEEEEecc
Confidence 235678889988 77777655 233333333 349999999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=145.54 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=156.0
Q ss_pred cCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCC
Q 000473 508 KEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
....|.+++ |+|. ..+.|+...+.+|..+.-+... +++..-..... ...+.-+.|.+.|.|.+|+|+
T Consensus 31 dsqairav~------fhp~g~lyavgsnskt~ric~yp~l~~~-r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--- 100 (350)
T KOG0641|consen 31 DSQAIRAVA------FHPAGGLYAVGSNSKTFRICAYPALIDL-RHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--- 100 (350)
T ss_pred chhheeeEE------ecCCCceEEeccCCceEEEEccccccCc-ccccccccCCCeEEeeeccccCccEEEEEecCc---
Confidence 456788877 6665 7889999999999877543321 01110011111 112233568999999999998
Q ss_pred cccCcCCCEEEEEECCCcEEEEECCCCce-----EEEEeccCCCEEEEEECCCCCC------------------------
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNL-----ITVMHHHVAPVRQIILSPPQTE------------------------ 635 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~tg~~-----l~~~~~H~~~V~~l~fspd~~~------------------------ 635 (1471)
+++|++|+.|++|++.-++...+ -..|.-|.+.|..++|-.+...
T Consensus 101 ------geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 101 ------GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred ------cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 89999999999999976653221 1345567777777776443110
Q ss_pred ---------------CC-CCCEEEEEeCCCcEEEEECCCCcEEEEecC--C-----CCCcEEEEEcCCCCEEEEEEcCCC
Q 000473 636 ---------------HP-WSDCFLSVGEDFSVALASLETLRVERMFPG--H-----PNYPAKVVWDCPRGYIACLCRDHS 692 (1471)
Q Consensus 636 ---------------~~-~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g--h-----~~~V~~v~~spdg~~L~sgs~D~s 692 (1471)
.. .+-.|++|+.|.+|++||++-..+++++.. | .+.|.+|+..|.|++|++|-.|
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-- 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-- 252 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC--
Confidence 01 145799999999999999999999887642 2 2478999999999999999998
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 693 RTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 693 g~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
.+..+||++.|+.++.+..|++.+-++.|.|.. ..+++++-|..||.=+|
T Consensus 253 ------ssc~lydirg~r~iq~f~phsadir~vrfsp~a-----------------~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 253 ------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-----------------HYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ------CceEEEEeeCCceeeeeCCCccceeEEEeCCCc-----------------eEEEEecccceEEEeec
Confidence 899999999999999999999999999998632 12334444777877655
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-14 Score=154.51 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=148.3
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
++..+.+.+++++|...... ...+..|.+.|+++.+..+.. -+.|++|++||.|.+|+ +
T Consensus 56 ~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S--~shLlS~sdDG~i~iw~---------------~ 114 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLS--KSHLLSGSDDGHIIIWR---------------V 114 (362)
T ss_pred EeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcc--hhheeeecCCCcEEEEE---------------c
Confidence 45566788999999877644 344567899999987443331 11599999999999933 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC--
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-- 635 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~-- 635 (1471)
.+.....++++|.+.|+.+++||. +++.+|-+.|+.+++||+-+|+.-....--. .-+.|.|+|....
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS---------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPS---------GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCC---------CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 444678899999999999999996 8999999999999999998876433222111 0111334433110
Q ss_pred -------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE--cCCCC
Q 000473 636 -------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRG 682 (1471)
Q Consensus 636 -------------------------------~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~--spdg~ 682 (1471)
-..+..+++|++|+.|++||..+..+...+.+|..+|..+.+ .|++.
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 113568999999999999999999999999999999999985 67889
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
||++++.| |.|+|||++..
T Consensus 265 ~lvTaSSD--------G~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSD--------GFIKVWDIDME 283 (362)
T ss_pred EEEEeccC--------ceEEEEEcccc
Confidence 99999999 99999999876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=164.76 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=156.4
Q ss_pred ccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 481 s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
.-.+|.++++| .+.+ .....+.+|..+|..+. |+|. .+++|+.|+.+++|+ .
T Consensus 86 GD~sG~V~vfD-~k~r---~iLR~~~ah~apv~~~~------f~~~d~t~l~s~sDd~v~k~~d---------------~ 140 (487)
T KOG0310|consen 86 GDESGHVKVFD-MKSR---VILRQLYAHQAPVHVTK------FSPQDNTMLVSGSDDKVVKYWD---------------L 140 (487)
T ss_pred cCCcCcEEEec-cccH---HHHHHHhhccCceeEEE------ecccCCeEEEecCCCceEEEEE---------------c
Confidence 33457888888 4431 23455688988888876 5554 788888888888833 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
.+......+.||++.|.|.+|+|. .+..++|||.||+|++||+++. ..+..+ .|..+|..+.+-|.
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~--------~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps---- 207 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPA--------NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS---- 207 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccC--------CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC----
Confidence 344445578999999999999996 3779999999999999999987 555555 69999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 637 PWSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~-~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
|..|++++. ..|++||+.+|. .+..+..|...|+|+++..++..|++|+-| +.|+|||+.+.+.+..+
T Consensus 208 --gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 208 --GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVHSW 276 (487)
T ss_pred --CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEEee
Confidence 889999874 589999999655 455555599999999999999999999999 99999998888888777
Q ss_pred eCCCCCceeeeee
Q 000473 716 RGTASHSMFDHFC 728 (1471)
Q Consensus 716 ~gH~~~v~~~~~~ 728 (1471)
.-. +.++.+...
T Consensus 277 ~~~-~pvLsiavs 288 (487)
T KOG0310|consen 277 KYP-GPVLSIAVS 288 (487)
T ss_pred ecc-cceeeEEec
Confidence 643 466665444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-14 Score=172.25 Aligned_cols=209 Identities=13% Similarity=0.150 Sum_probs=160.8
Q ss_pred CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000473 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1471)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~s 579 (1471)
.....+.||.+.|..+.+...+ .|++++.|.++++ | .+....++.+| .|.+.|+|++|+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRL--W-------------h~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRL--W-------------HPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred cchhhhhccchhheecccccCC-----eeEeccccccEEe--e-------------cCCCcceeeEE-ecCCeeEEEEec
Confidence 4456678999999887755444 5999999999998 4 35555777766 499999999999
Q ss_pred cCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000473 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1471)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~ 659 (1471)
|- +.++++||+-|+.||||++...+...-...+ .-|++++|.|+ |+..+.|+-+|.+++|+....
T Consensus 419 Pv--------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 419 PV--------DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cc--------CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC
Confidence 96 4899999999999999999876655444444 78999999999 999999999999999999988
Q ss_pred cEEEEecC--C------CCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCc--eeeeee
Q 000473 660 RVERMFPG--H------PNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS--MFDHFC 728 (1471)
Q Consensus 660 ~~l~~~~g--h------~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v--~~~~~~ 728 (1471)
+....+.- | ...|+.+.|.|... .+++.+.| ..|||+|.++..++..+.|+...- +.+.|.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD--------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND--------SRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC--------CceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 77655431 1 12799999987654 46677777 899999999999999999876422 223333
Q ss_pred eccccccccceEEcCCccccccceeeccCCceEeecccccc
Q 000473 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 729 ~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~ 769 (1471)
.+|. .++..++|.-+.+|++..+.
T Consensus 556 ------------~Dgk-----~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 556 ------------SDGK-----HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ------------cCCC-----EEEEeecCceEEEEeCCCCc
Confidence 1222 34455579999999975444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=162.36 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=144.4
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
.+|...+.++++.++.. ++++|..|..|.| |+.++.+.++.+.||.+.|.+++|-..
T Consensus 199 ~~h~keil~~avS~Dgk----ylatgg~d~~v~I---------------w~~~t~ehv~~~~ghr~~V~~L~fr~g---- 255 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGK----YLATGGRDRHVQI---------------WDCDTLEHVKVFKGHRGAVSSLAFRKG---- 255 (479)
T ss_pred ccccceeEEEEEcCCCc----EEEecCCCceEEE---------------ecCcccchhhcccccccceeeeeeecC----
Confidence 37889999999888888 6999999999998 445677888899999999999999764
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~ 665 (1471)
...|.+++.|++|++|+++....+.++.+|...|.+|..... ++++..|+.|+++++|++. -+....|
T Consensus 256 -----t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 256 -----TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred -----ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEecc-ccceeee
Confidence 678999999999999999998889999999999999988776 6777777799999999995 3444678
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 666 ~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
.+|.+.+.|++|-.+ ..+++|+.| |.|.+|++.+.+++.+..
T Consensus 324 rg~~~sidcv~~In~-~HfvsGSdn--------G~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIND-EHFVSGSDN--------GSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eCCCCCeeeEEEecc-cceeeccCC--------ceEEEeeecccCceeEee
Confidence 899999999999765 467789988 999999999988887654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-14 Score=161.67 Aligned_cols=215 Identities=18% Similarity=0.203 Sum_probs=153.6
Q ss_pred cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
.+.+|...|+++.+-+... ++++|+.|-+|+.|+++-+. ...+ ..+.++ ..-+..|+++.|++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMd---as~~-----~fr~l~--P~E~h~i~sl~ys~T-- 225 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMD---ASMR-----SFRQLQ--PCETHQINSLQYSVT-- 225 (641)
T ss_pred eccCCceEEEEeeecCCCc----eeeeccccceEEEEeccccc---ccch-----hhhccC--cccccccceeeecCC--
Confidence 3578889999988555554 99999999999996665221 1111 111122 223446899999997
Q ss_pred CcccCcCCCEEEEEECCCcEEEEECCCCceEE-------------EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000473 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1471)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~-------------~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dgs 650 (1471)
+..|+..+.....+|+|-. |..+. .-++|...+++..|+|.. .+.|+|++.|++
T Consensus 226 -------g~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 226 -------GDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCSYDGT 292 (641)
T ss_pred -------CCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEecCCCc
Confidence 6666666667789999954 33322 235799999999999985 679999999999
Q ss_pred EEEEECCCCc-EEEEec-----CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe---EEEEEeCCCC-
Q 000473 651 VALASLETLR-VERMFP-----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA---RERVLRGTAS- 720 (1471)
Q Consensus 651 V~lWdl~t~~-~l~~~~-----gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~---~~~~l~gH~~- 720 (1471)
+|+||+...+ .+..+. +..-+++.++|+|||+.|++||.| |+|.+||..... ...+-..|..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D--------GSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD--------GSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC--------CceeeeecCCcccccceEeeeccCCC
Confidence 9999997644 333332 233478999999999999999999 999999975432 1233456765
Q ss_pred -CceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccccc
Q 000473 721 -HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772 (1471)
Q Consensus 721 -~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~ 772 (1471)
.+.++.|. .+|+...+... |+++|+|+|+++.+..
T Consensus 365 ~~Itsi~FS------------~dg~~LlSRg~-----D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 365 QDITSISFS------------YDGNYLLSRGF-----DDTLKVWDLRQFKKPL 400 (641)
T ss_pred CceeEEEec------------cccchhhhccC-----CCceeeeeccccccch
Confidence 67777776 33455444444 9999999999887654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=168.92 Aligned_cols=200 Identities=20% Similarity=0.196 Sum_probs=162.9
Q ss_pred ccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000473 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1471)
Q Consensus 483 ~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1471)
....+.+|+.....- .....-+...|+++.+..+.. .|++|..+|.+.| | |..+.+.
T Consensus 195 lg~~vylW~~~s~~v----~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~i--w-------------D~~~~k~ 251 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSV----TELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQI--W-------------DVKEQKK 251 (484)
T ss_pred ecceEEEEecCCCce----EEeEecCCCceEEEEECCCCC----EEEEeecCCeEEE--E-------------ehhhccc
Confidence 344577888766431 122222367899998777666 7999999999999 3 3445566
Q ss_pred EEEEec-CCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEE-EeccCCCEEEEEECCCCCCCCCCC
Q 000473 563 RQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 563 ~~~l~g-H~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~-~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
.+.+.+ |...|-|++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++ +.
T Consensus 252 ~~~~~~~h~~rvg~laW~-----------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~ 314 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN-----------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GN 314 (484)
T ss_pred cccccCCcCceeEEEecc-----------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CC
Confidence 777888 99999999997 57899999999999999998876655 8899999999999999 99
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000473 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 641 ~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~ 719 (1471)
+++||+.|+.+.|||.....+...+..|.+.|.+++|+|-. ..||+|+.- . |++|++||..+|++++.+...
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----~--D~~i~fwn~~~g~~i~~vdtg- 387 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----A--DRCIKFWNTNTGARIDSVDTG- 387 (484)
T ss_pred eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC----c--ccEEEEEEcCCCcEecccccC-
Confidence 99999999999999998889999999999999999999964 577776532 3 499999999999999887643
Q ss_pred CCceeeeeee
Q 000473 720 SHSMFDHFCK 729 (1471)
Q Consensus 720 ~~v~~~~~~~ 729 (1471)
++|..+.|.+
T Consensus 388 sQVcsL~Wsk 397 (484)
T KOG0305|consen 388 SQVCSLIWSK 397 (484)
T ss_pred CceeeEEEcC
Confidence 3666666764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-13 Score=145.59 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=92.3
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC-------CceEEEE----eccCCCEEEEEE
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------GNLITVM----HHHVAPVRQIIL 629 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t-------g~~l~~~----~~H~~~V~~l~f 629 (1471)
..+..|+||...|..++|+++ ...++|.|.||++++||++- .+.+.++ ..-++.-..+.+
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred hhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe
Confidence 345678999999999999997 79999999999999999862 1223222 222333448999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~-gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+|+ |+.|+. +.-.+++++..++|+..-.+. .|...|.++.|+++|+|++++++ ..++|.-
T Consensus 340 sP~------g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd---------r~vrv~~ 400 (420)
T KOG2096|consen 340 SPS------GDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD---------RYVRVIR 400 (420)
T ss_pred CCC------CcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc---------eeeeeec
Confidence 998 776654 445689999999988776664 58889999999999999988654 5777754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=154.76 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=166.4
Q ss_pred ccccCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
-.+|..+|-.++|.+- .|+ .|++++.||.=.+. +-++|.-+.+|.||.++|+......+
T Consensus 10 c~ghtrpvvdl~~s~i---tp~g~flisa~kd~~pmlr---------------~g~tgdwigtfeghkgavw~~~l~~n- 70 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPI---TPDGYFLISASKDGKPMLR---------------NGDTGDWIGTFEGHKGAVWSATLNKN- 70 (334)
T ss_pred EcCCCcceeEEeccCC---CCCceEEEEeccCCCchhc---------------cCCCCCcEEeeeccCcceeeeecCch-
Confidence 4678888888774331 122 79999999876541 23456778999999999999888765
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc-E
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-V 661 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~-~ 661 (1471)
....+|++.|.+.++||.-+|..++.| .|..-|.+++|+.| .+.|++|+.++.+|++|++..+ +
T Consensus 71 --------a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~d------s~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 71 --------ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQD------SNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred --------hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEeccc------chhhhccchHHHhhhhhccCCCCC
Confidence 678899999999999999999999999 57788999999999 8999999999999999998654 5
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEE
Q 000473 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVL 741 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~ 741 (1471)
...+.+|.+.|..+.|...++.+++...| ++||+||.+||..++++.-.. +|......
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd--------~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs------------- 193 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADD--------KTVRLWDHRTGTEVQSLEFNS-PVTSLEVS------------- 193 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccC--------CceEEEEeccCcEEEEEecCC-CCcceeec-------------
Confidence 67889999999999999988889888777 999999999999999887543 44444333
Q ss_pred cCCccccccceeeccCCceEeeccccccc
Q 000473 742 NGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 742 ~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
-.+.+++++-.++++.|+.++|+.
T Consensus 194 -----~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 194 -----QDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred -----cCCCEEEEecCceeEEeccccccc
Confidence 234566777788899999887764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-11 Score=139.05 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=95.0
Q ss_pred EEEEEEecCCCCcccCcCCCEE-EEEECCCcEEEEECCCCceEEEEeccCC-------CEEEEEECCCCCCCCCCCEE-E
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLITVMHHHVA-------PVRQIILSPPQTEHPWSDCF-L 643 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L-~SGs~DgtI~lWDl~tg~~l~~~~~H~~-------~V~~l~fspd~~~~~~~~~l-~ 643 (1471)
..+++|+|+ +++| +++..|+.|++||+.+++.+..+..+.. ....++|+|+ ++.+ +
T Consensus 159 ~~~~~~s~d---------g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTAD---------GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD------GKTAFV 223 (300)
T ss_pred ccEEEECCC---------CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC------CCEEEE
Confidence 456889987 6666 5666799999999999988777653321 1346889998 7764 4
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEc-CCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR-DHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 644 S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~-D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
+.+.++.+.+||+++++.+..+. +...+.+++|+|+|++|++++. + |+|+|||++++++++.+...
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~--------~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVS--------NDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCC--------CeEEEEECCCCcEEEEEEcc
Confidence 45667789999999998876653 4457899999999999988754 5 89999999999998888754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=144.51 Aligned_cols=209 Identities=14% Similarity=0.174 Sum_probs=157.2
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
+..-...|+++.+..+.. .+++.++|.++++ ++ ..+++..+++..++..|..+.|.+.
T Consensus 10 f~~~~~~i~sl~fs~~G~----~litss~dDsl~L--Yd-------------~~~g~~~~ti~skkyG~~~~~Fth~--- 67 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL----LLITSSEDDSLRL--YD-------------SLSGKQVKTINSKKYGVDLACFTHH--- 67 (311)
T ss_pred cccCCCceeEEEecCCCC----EEEEecCCCeEEE--EE-------------cCCCceeeEeecccccccEEEEecC---
Confidence 444457889988555554 7888899999999 33 4467888888888888888888654
Q ss_pred cccCcCCCEEEEEEC--CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 585 AKGWSFNEVLVSGSM--DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~--DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
...++-++. |.+||.-++.+.+.++.|.||...|.+|..+|- ++.|+|++.|++|++||++..+|.
T Consensus 68 ------~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~------~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 68 ------SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK------DDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred ------CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC------CCeEEecccCCeEEeeEecCCCCc
Confidence 455555555 999999999999999999999999999999998 899999999999999999854322
Q ss_pred EEec---------------------------------------------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000473 663 RMFP---------------------------------------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1471)
Q Consensus 663 ~~~~---------------------------------------------gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~ 697 (1471)
..+. +-....+.+.|+|||++|+.+...
T Consensus 136 g~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------- 208 (311)
T KOG1446|consen 136 GLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------- 208 (311)
T ss_pred eEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-------
Confidence 2111 112346789999999999998887
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCCc-eeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 698 VDVLFIWDVKTGARERVLRGTASHS-MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 698 ~gtV~VWDi~tg~~~~~l~gH~~~v-~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
+.+++-|.-+|....++.+|...- +...+| .. +++.+ ++..+.||++.+|+++.-++
T Consensus 209 -s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~----ft------Pds~F-----vl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 209 -SFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT----FT------PDSKF-----VLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred -CcEEEEEccCCcEeeeEeeccCCCCcceeEE----EC------CCCcE-----EEEecCCCcEEEEEcCCCcE
Confidence 899999999999999999987544 222222 00 11222 23334489999999854443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=156.90 Aligned_cols=240 Identities=14% Similarity=0.127 Sum_probs=182.6
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----------cc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----------FE 546 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~-----------l~ 546 (1471)
+++.+.+|-+++|+..+. .+..++..|.+.|.-+.+.. ..+++.+.|.+|+.|..+. +.
T Consensus 82 ~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~ 151 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYL 151 (433)
T ss_pred hhccccCceEEEEehhhh----hhhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeecccccc
Confidence 456677889999998874 56778999999999887444 3588889999999975321 00
Q ss_pred cCC------------CCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE
Q 000473 547 RHN------------SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI 614 (1471)
Q Consensus 547 ~~d------------~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l 614 (1471)
+.| ....+||..-..+++.+.--.+.+.++.|+|.. ...|++|+.|++|.++|++++.++
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE--------TsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE--------TSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc--------chheeeeccCCceEEEecccCCcc
Confidence 101 112478887777888888778889999999972 678999999999999999999988
Q ss_pred EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCC
Q 000473 615 TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR 693 (1471)
Q Consensus 615 ~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg 693 (1471)
+.... +-.-..|+|+|+ +-.|+++++|..+..+|++.. +++..+.+|.+.|.+|.|+|.|+-+++|+.|
T Consensus 224 ~KVi~-~mRTN~IswnPe------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD--- 293 (433)
T KOG0268|consen 224 KKVIL-TMRTNTICWNPE------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD--- 293 (433)
T ss_pred ceeee-eccccceecCcc------ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc---
Confidence 66532 223467899996 889999999999999999875 5678889999999999999999999999998
Q ss_pred CCCCCCEEEEEECCCCeEEEEEeC-CCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 694 TSDAVDVLFIWDVKTGARERVLRG-TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 694 ~~D~~gtV~VWDi~tg~~~~~l~g-H~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
.+|+||.+..|+---++.. --.+|+++.|. ..+-.|++|+ .|+.+|.|..+.
T Consensus 294 -----ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S------~Dskyi~SGS-----------dd~nvRlWka~A 346 (433)
T KOG0268|consen 294 -----KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS------MDSKYIISGS-----------DDGNVRLWKAKA 346 (433)
T ss_pred -----ceEEEeecCCCcchhhhhHhhhheeeEEEEe------ccccEEEecC-----------CCcceeeeecch
Confidence 9999999988765433321 12356666665 1222333333 389999998643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=156.84 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=111.7
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC
Q 000473 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1471)
Q Consensus 523 f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D 600 (1471)
|+|. .++.++. ..|+|+++. ....+..+......|..+++||. |..|+.|+.|
T Consensus 574 FHPs~p~lfVaTq-~~vRiYdL~---------------kqelvKkL~tg~kwiS~msihp~---------GDnli~gs~d 628 (733)
T KOG0650|consen 574 FHPSKPYLFVATQ-RSVRIYDLS---------------KQELVKKLLTGSKWISSMSIHPN---------GDNLILGSYD 628 (733)
T ss_pred ecCCCceEEEEec-cceEEEehh---------------HHHHHHHHhcCCeeeeeeeecCC---------CCeEEEecCC
Confidence 5554 4555554 578884332 12334444444556889999996 8999999999
Q ss_pred CcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC------CC---cEEEEecCCCC
Q 000473 601 CSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE------TL---RVERMFPGHPN 670 (1471)
Q Consensus 601 gtI~lWDl~tg-~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~------t~---~~l~~~~gh~~ 670 (1471)
+.++++|+.-. ++.+++..|...|++|+|++. -.+||||+.|+++.|+.-. .. -++..+.||..
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 99999999744 567888899999999999998 7899999999999988532 11 24577889976
Q ss_pred C----cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000473 671 Y----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1471)
Q Consensus 671 ~----V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW 704 (1471)
. |..+.|+|...+|++++.| |+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd--------~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGAD--------GTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCC--------ceEEee
Confidence 5 8999999999999999999 999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-14 Score=159.04 Aligned_cols=201 Identities=16% Similarity=0.242 Sum_probs=155.2
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
+.+|...|.|++-.+.. +..+++|+.||.|++ | |.....+..+|..|.|.|..|.+.
T Consensus 62 L~gHrdGV~~lakhp~~---ls~~aSGs~DG~Vki--W-------------nlsqR~~~~~f~AH~G~V~Gi~v~----- 118 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKI--W-------------NLSQRECIRTFKAHEGLVRGICVT----- 118 (433)
T ss_pred ccccccccchhhcCcch---hhhhhccccCceEEE--E-------------ehhhhhhhheeecccCceeeEEec-----
Confidence 57899999998733322 126899999999999 3 344557788999999999999986
Q ss_pred cccCcCCCEEEEEECCCcEEEEECCC---------------------------C-----------ceEEEEeccCCCEEE
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGS---------------------------G-----------NLITVMHHHVAPVRQ 626 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~t---------------------------g-----------~~l~~~~~H~~~V~~ 626 (1471)
...+++++.|.+|+.|-+.- | .++..|.--...|.+
T Consensus 119 ------~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 119 ------QTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred ------ccceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeE
Confidence 35688888999988887431 1 133334444556788
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 627 l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
+.|+|.+ -..|++++.|++|.|||++++.+++...- ...-+.|+|+|.+-.+++|.+| ..+|.+|+
T Consensus 193 vkfNpvE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED--------~nlY~~Dm 258 (433)
T KOG0268|consen 193 VKFNPVE-----TSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED--------HNLYTYDM 258 (433)
T ss_pred EecCCCc-----chheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccc--------ccceehhh
Confidence 8888885 56899999999999999999998876542 3346789999977777888888 89999999
Q ss_pred CC-CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 707 KT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 707 ~t-g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
+. .+.+.+..+|.+.|+.++|.| +|..-++++. |.+||++..
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfsp------------tG~Efvsgsy-----DksIRIf~~ 301 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFSP------------TGQEFVSGSY-----DKSIRIFPV 301 (433)
T ss_pred hhhcccchhhcccceeEEEeccCC------------Ccchhccccc-----cceEEEeec
Confidence 87 457889999999999998883 4556566666 999998765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-12 Score=139.50 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=74.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCc---------cEEEEEEecCCCCcccCcCCCEEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG---------AVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~---------~V~~la~spd~~~~~~~~~~~~L~SG 597 (1471)
..++++-||.+.|-.++.- -........|+.|.. +|++++|||- -+.|+||
T Consensus 191 Gy~~sSieGRVavE~~d~s-----------~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~---------~~tfaTg 250 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDS-----------EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI---------HGTFATG 250 (323)
T ss_pred ceEEEeecceEEEEccCCc-----------hHHhhhceeEEeeecccCCceEEEEeceeEeccc---------cceEEec
Confidence 5778888898888555521 011122345566632 6999999996 5789999
Q ss_pred ECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000473 598 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1471)
Q Consensus 598 s~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~ 647 (1471)
+.||.|.+||+.+.+.+..|......|.+++|+.+ |.+||.++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d------G~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD------GSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEeccC------CCeEEEEec
Confidence 99999999999999999999888888999999999 899998864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=156.75 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=123.4
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCCC
Q 000473 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 564 ~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-------~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
-.+.||+++|..++|.|. +.+.|+|||.|.+|.||++..+ +++..+.+|...|--++|+|..
T Consensus 75 P~v~GHt~~vLDi~w~Pf--------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA--- 143 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPF--------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA--- 143 (472)
T ss_pred CCccCccccccccccCcc--------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc---
Confidence 346799999999999997 3789999999999999999643 3567889999999999999984
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
.+.|+|++.|.+|.+||+.+|+.+..+. |..-|+++.|+-||.+|+++|.| ..|||||.++|+.+.+-.
T Consensus 144 --~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 144 --PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred --hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeecc
Confidence 6799999999999999999999988877 99999999999999999999999 999999999999999988
Q ss_pred CCCC
Q 000473 717 GTAS 720 (1471)
Q Consensus 717 gH~~ 720 (1471)
+|.+
T Consensus 213 ~heG 216 (472)
T KOG0303|consen 213 AHEG 216 (472)
T ss_pred cccC
Confidence 8875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=159.93 Aligned_cols=186 Identities=18% Similarity=0.225 Sum_probs=151.6
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+.+++.+.++..+.......-+ .+.+-.-.++.+++..+.. .++.|+.|-.|++.+.+
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~----iL~Rftlp~r~~~v~g~g~----~iaagsdD~~vK~~~~~------------- 126 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT----ILARFTLPIRDLAVSGSGK----MIAAGSDDTAVKLLNLD------------- 126 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc----eeeeeeccceEEEEecCCc----EEEeecCceeEEEEecc-------------
Confidence 57788888999988877654422 2233345677777666655 79999999999995543
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc--------CCCEEEEE
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--------VAPVRQII 628 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H--------~~~V~~l~ 628 (1471)
+.....++.||.++|.+|.|+|. +++|++.+.||.|++||+.++.+.+++.+- ...+..++
T Consensus 127 --D~s~~~~lrgh~apVl~l~~~p~---------~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 127 --DSSQEKVLRGHDAPVLQLSYDPK---------GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred --ccchheeecccCCceeeeeEcCC---------CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 23456789999999999999997 899999999999999999999877666531 45678899
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 629 fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g--h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
|+|+ +..|+..+.|++|++|+..++.....+.. +...+..+.|+|.|.|||++..| |.|.|||.
T Consensus 196 W~Pk------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~--------g~I~vWnv 261 (933)
T KOG1274|consen 196 WHPK------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD--------GQILVWNV 261 (933)
T ss_pred ecCC------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC--------CcEEEEec
Confidence 9999 88899999999999999999988776653 34458999999999999999999 99999999
Q ss_pred CC
Q 000473 707 KT 708 (1471)
Q Consensus 707 ~t 708 (1471)
++
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 97
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=144.55 Aligned_cols=205 Identities=18% Similarity=0.227 Sum_probs=147.5
Q ss_pred CccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 509 EKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
...|.+++ |+|. .+++|+.||+|++|..+. .+ . ..+ +....|.++|.+++|+.|
T Consensus 27 ~DsIS~l~------FSP~~~~~~~A~SWD~tVR~wevq~------~g----~--~~~-ka~~~~~~PvL~v~Wsdd---- 83 (347)
T KOG0647|consen 27 EDSISALA------FSPQADNLLAAGSWDGTVRIWEVQN------SG----Q--LVP-KAQQSHDGPVLDVCWSDD---- 83 (347)
T ss_pred ccchheeE------eccccCceEEecccCCceEEEEEec------CC----c--ccc-hhhhccCCCeEEEEEccC----
Confidence 46677777 5552 677999999999965541 00 0 011 345679999999999987
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~ 665 (1471)
+..+++|+.|+.+++||+.+++ ...+..|.++|..+.|-+... -.||+|||.|+++++||.+...++.++
T Consensus 84 -----gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 84 -----GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred -----CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC----cceeEecccccceeecccCCCCeeeee
Confidence 8999999999999999999995 567789999999999987621 359999999999999999875444332
Q ss_pred c-------------------------------------CCCC----CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000473 666 P-------------------------------------GHPN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1471)
Q Consensus 666 ~-------------------------------------gh~~----~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW 704 (1471)
. .+.+ .+++|+...|.+..+.|+-. |.+-|-
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE--------Grv~iq 225 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE--------GRVAIQ 225 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec--------ceEEEE
Confidence 2 1111 35778888887777888888 899998
Q ss_pred ECCCC--eEEEEEeCCCCCce--e-eeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 705 DVKTG--ARERVLRGTASHSM--F-DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 705 Di~tg--~~~~~l~gH~~~v~--~-~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
.+..+ +.--+++-|+.... . +-..+++.++.+.|. ++++..||++..|+-
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-----------lvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-----------LVTAGSDGTFSFWDK 280 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----------EEEecCCceEEEecc
Confidence 88876 33345666663221 1 222344445554444 466777999999984
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=144.89 Aligned_cols=229 Identities=18% Similarity=0.183 Sum_probs=156.7
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce---EEEEecCCccEEEEEEecCC
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS---RQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~---~~~l~gH~~~V~~la~spd~ 582 (1471)
..|.+.|+++.+-.... .++++|+.||.|.||+.+.... . -...-+...++ .+.-.+|...|..+.|-|-
T Consensus 40 r~HgGsvNsL~id~teg---rymlSGgadgsi~v~Dl~n~t~--~-e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~- 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEG---RYMLSGGADGSIAVFDLQNATD--Y-EASGLIAKHKCIVAKQHENGHKYAISSAIWYPI- 112 (397)
T ss_pred ccCCCccceeeeccccc---eEEeecCCCccEEEEEeccccc--h-hhccceeheeeeccccCCccceeeeeeeEEeee-
Confidence 45788888876433322 2799999999999965542110 0 00000001111 1223579999999999886
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-EEEEEeCCCcEEEEECCCCcE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRV 661 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~-~l~S~s~DgsV~lWdl~t~~~ 661 (1471)
+...+.|+|-|.+++|||..|-+..-.|+ ..+.|.+-+++|-.. .+ ++++|..|-.|+|-|+.+|.+
T Consensus 113 -------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 113 -------DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred -------cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh----cceEEEEecCCCcEEEEeccCCcc
Confidence 36789999999999999999988877775 356788888888631 23 566677788999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCc-eeeeeeeccccccccc
Q 000473 662 ERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHS-MFDHFCKGISMNSISG 738 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg~~L-~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~v-~~~~~~~~~~~~~~sg 738 (1471)
-+.+.||.+.|.+|.|+|...++ ++|+.| |.|++||++.. -+.+++.-|...- ..+...+. -...+.|
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD--------g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a-h~gkvng 251 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSAD--------GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA-HYGKVNG 251 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCC--------ceEEEEEeecccceeEEeecccCccCcccccccc-ccceeee
Confidence 99999999999999999988865 667777 99999999875 6788888887411 11111100 0001122
Q ss_pred eEEcCCccccccceeeccCCceEeecc
Q 000473 739 SVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 739 ~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
.. + ++....+..+..|.++|.|+.
T Consensus 252 la--~-tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 252 LA--W-TSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ee--e-cccchhhhhccCccceEEeec
Confidence 21 1 222233456666999999986
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-10 Score=134.72 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=70.6
Q ss_pred EEEEEecCCCCcccCcCCCE-EEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE-eCCCcE
Q 000473 574 LCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSV 651 (1471)
Q Consensus 574 ~~la~spd~~~~~~~~~~~~-L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~-s~DgsV 651 (1471)
..++|+|+ +++ +++.+.++.+.+||+.+++.+..+. +...+.++.|+|+ ++.|+++ +.++.|
T Consensus 210 ~~i~~s~d---------g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~i 273 (300)
T TIGR03866 210 VGIKLTKD---------GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD------EKYLLTTNGVSNDV 273 (300)
T ss_pred cceEECCC---------CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC------CCEEEEEcCCCCeE
Confidence 45788887 565 4555567789999999988776553 4457999999999 8888776 569999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000473 652 ALASLETLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 652 ~lWdl~t~~~l~~~~gh~~~V~~v~~sp 679 (1471)
++||+++++++..+... ..++.++++|
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999988754 5568888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=140.81 Aligned_cols=207 Identities=13% Similarity=0.168 Sum_probs=151.6
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCC
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGT 584 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~-spd~~~ 584 (1471)
.+|..-|.++.+.... .++++++.|++++||+.+. +..+-.+....+.|.+.|..+.| ||.
T Consensus 10 s~h~DlihdVs~D~~G----RRmAtCSsDq~vkI~d~~~-----------~s~~W~~Ts~Wrah~~Si~rV~WAhPE--- 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG----RRMATCSSDQTVKIWDSTS-----------DSGTWSCTSSWRAHDGSIWRVVWAHPE--- 71 (361)
T ss_pred cCCcceeeeeeecccC----ceeeeccCCCcEEEEeccC-----------CCCceEEeeeEEecCCcEEEEEecCcc---
Confidence 4677778887633222 2999999999999955431 11222445567889999999999 555
Q ss_pred cccCcCCCEEEEEECCCcEEEEECC---------CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~---------tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWd 655 (1471)
+|+.+++++.|+++.||.-. ......++....+.|+.+.|.|.+ .|-.+++++.||++|||+
T Consensus 72 -----fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h----lGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 72 -----FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH----LGLKLAAASADGILRIYE 142 (361)
T ss_pred -----ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh----cceEEEEeccCcEEEEEe
Confidence 59999999999999999862 123456777888999999999973 266888999999999986
Q ss_pred CCCC-------------------------------------------------------------------cEEEEecCC
Q 000473 656 LETL-------------------------------------------------------------------RVERMFPGH 668 (1471)
Q Consensus 656 l~t~-------------------------------------------------------------------~~l~~~~gh 668 (1471)
.-+. ..+..+.+|
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 4320 122345588
Q ss_pred CCCcEEEEEcCCC----CEEEEEEcCCCCCCCCCCEEEEEECCCC--------------------eEEEEEeCCCCCcee
Q 000473 669 PNYPAKVVWDCPR----GYIACLCRDHSRTSDAVDVLFIWDVKTG--------------------ARERVLRGTASHSMF 724 (1471)
Q Consensus 669 ~~~V~~v~~spdg----~~L~sgs~D~sg~~D~~gtV~VWDi~tg--------------------~~~~~l~gH~~~v~~ 724 (1471)
..+|+.++|.|+- ..|+++|.| | |+||.++.. +.+..+.+|.++|..
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kD--------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKD--------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecC--------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 8999999999973 478999998 8 999999731 245667899999998
Q ss_pred eeeeeccccccccceEEcCCccccccceeeccCCceEeecc
Q 000473 725 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 725 ~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l 765 (1471)
+.|. .+|++ ..+. ..||++|.|+.
T Consensus 294 v~wN-------mtGti-----LsSt-----GdDG~VRLWka 317 (361)
T KOG2445|consen 294 VRWN-------MTGTI-----LSST-----GDDGCVRLWKA 317 (361)
T ss_pred EEEe-------eeeeE-----Eeec-----CCCceeeehhh
Confidence 8766 24443 3333 34999999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=144.65 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=149.3
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC----EEEEEEcCCcEEEEEecccccCCCCCC
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~----~lv~Gs~DG~I~V~~~~~l~~~d~~~~ 553 (1471)
++..+.++.+-+|...+.+- ........|...|+++. |.|+ .|+||+.||+|.|..++.- .
T Consensus 73 LAScsYDgkVIiWke~~g~w--~k~~e~~~h~~SVNsV~------wapheygl~LacasSDG~vsvl~~~~~-------g 137 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRW--TKAYEHAAHSASVNSVA------WAPHEYGLLLACASSDGKVSVLTYDSS-------G 137 (299)
T ss_pred eeEeecCceEEEEecCCCch--hhhhhhhhhcccceeec------ccccccceEEEEeeCCCcEEEEEEcCC-------C
Confidence 66677888889998887532 33455678999999987 6665 7999999999999777621 1
Q ss_pred ccccCCcceEEEEecCCccEEEEEEecCCCCccc-------CcCCCEEEEEECCCcEEEEECCCCc--eEEEEeccCCCE
Q 000473 554 SLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG-------WSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHVAPV 624 (1471)
Q Consensus 554 ~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~-------~~~~~~L~SGs~DgtI~lWDl~tg~--~l~~~~~H~~~V 624 (1471)
.|+. .+....|.-.|+++.|.|.. .+| ...-+.|+||+.|..|++|+...++ +-++|.+|.+-|
T Consensus 138 ~w~t-----~ki~~aH~~GvnsVswapa~--~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 138 GWTT-----SKIVFAHEIGVNSVSWAPAS--APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred Cccc-----hhhhhccccccceeeecCcC--CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 2332 23456899999999999862 111 0112679999999999999998764 446799999999
Q ss_pred EEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cE--EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEE
Q 000473 625 RQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1471)
Q Consensus 625 ~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~--l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV 701 (1471)
+.++|.|..... ..+++|++.||+|.||..+.. +. ...+......++.+.||+.|+.|++++.| +.|
T Consensus 211 RDVAwaP~~gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd--------Nkv 280 (299)
T KOG1332|consen 211 RDVAWAPSVGLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD--------NKV 280 (299)
T ss_pred hhhhhccccCCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC--------cEE
Confidence 999999974221 248999999999999987521 11 12333456789999999999999999988 999
Q ss_pred EEEECC
Q 000473 702 FIWDVK 707 (1471)
Q Consensus 702 ~VWDi~ 707 (1471)
++|.-.
T Consensus 281 tlwke~ 286 (299)
T KOG1332|consen 281 TLWKEN 286 (299)
T ss_pred EEEEeC
Confidence 999743
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=158.23 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=118.0
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--EecCCccEEEEEEec
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAHR 580 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~gH~~~V~~la~sp 580 (1471)
..+..|...|..+..++... .||+++.|.+|+. | |++....... +.||++.|.+++|+|
T Consensus 94 k~~~aH~nAifDl~wapge~----~lVsasGDsT~r~--W-------------dvk~s~l~G~~~~~GH~~SvkS~cf~~ 154 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRP--W-------------DVKTSRLVGGRLNLGHTGSVKSECFMP 154 (720)
T ss_pred cccccccceeEeeccCCCce----eEEEccCCceeee--e-------------eeccceeecceeecccccccchhhhcc
Confidence 44578889998888666554 8999999999998 3 3444455544 899999999999999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCc---------------------------eEEEEeccCCCEEE---EEEC
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IILS 630 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~---------------------------~l~~~~~H~~~V~~---l~fs 630 (1471)
+ +...|++|+.||.|.|||++-.. .++....|...|.+ +.+.
T Consensus 155 ~--------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 155 T--------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred C--------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 7 37899999999999999986211 12233345444554 4444
Q ss_pred CCCCCCCCCCEEEEEeC-CCcEEEEECCCCcEE--------EEecCC---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000473 631 PPQTEHPWSDCFLSVGE-DFSVALASLETLRVE--------RMFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1471)
Q Consensus 631 pd~~~~~~~~~l~S~s~-DgsV~lWdl~t~~~l--------~~~~gh---~~~V~~v~~spdg~~L~sgs~D~sg~~D~~ 698 (1471)
-| ...|+|+|. |+.|+|||++...+. ..++.| .-.+.++..+..|.+|++.|.|
T Consensus 227 kD------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD-------- 292 (720)
T KOG0321|consen 227 KD------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD-------- 292 (720)
T ss_pred ec------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC--------
Confidence 55 578998887 999999999875432 222333 2246677777778888888888
Q ss_pred CEEEEEECCC
Q 000473 699 DVLFIWDVKT 708 (1471)
Q Consensus 699 gtV~VWDi~t 708 (1471)
++||.||+.+
T Consensus 293 ~sIy~ynm~s 302 (720)
T KOG0321|consen 293 NSIYFYNMRS 302 (720)
T ss_pred CcEEEEeccc
Confidence 6666666643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-12 Score=138.95 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=152.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccccc
Q 000473 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1471)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~ 98 (1471)
-+|+.|++-|.+||.|+.||.|.+||+.+ ..+-.+|.+|.-+|++|+ +
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl~---------------------------W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----FRIARMLSAHVRPITSLC---------------------------W 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----cchhhhhhccccceeEEE---------------------------e
Confidence 68999999999999999999999999986 345578899999999999 6
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCC--eEEEEcc----eecccCCccccccc----
Q 000473 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGC----CFIDTNQLSDHHSF---- 168 (1471)
Q Consensus 99 s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~--~ll~~G~----~~id~~~~~~~h~~---- 168 (1471)
|+|+..|+|+|.|..+.+||+.+|.|+.+..++ +|.--+.+.|.. ..+++-. ..++... ..|+.
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d 147 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKD 147 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEcc----CccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCC
Confidence 778888999999999999999999999887764 333333333222 2222111 1111111 11222
Q ss_pred -----cccccc-ccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcE
Q 000473 169 -----ESVEGD-LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRL 242 (1471)
Q Consensus 169 -----~~i~~~-~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V 242 (1471)
+..-.+ ..-..+++...+..+|.+.++|..|++++..+.-.. +..|..+-|+- .+ ..+++-++|..|
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~---~g--~~liiNtsDRvI 220 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSR---KG--RFLIINTSDRVI 220 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEec---cC--cEEEEecCCceE
Confidence 111111 112234556678889999999999998887654311 23477777662 11 234444999999
Q ss_pred EEEECCCCCCcccccCCCcccCC-CcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCC
Q 000473 243 QLVPISKESHLDREEGNGLCKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSG 309 (1471)
Q Consensus 243 ~vW~l~~~~~~~~~~~~~l~~~e-~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~ 309 (1471)
|++++..-... +..++. +.+ |-.++|+..+. ..+.|+.+|.++..++...--+-+|+..
T Consensus 221 R~ye~~di~~~-~r~~e~--e~~~K~qDvVNk~~W-----k~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 221 RTYEISDIDDE-GRDGEV--EPEHKLQDVVNKLQW-----KKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred EEEehhhhccc-CccCCc--ChhHHHHHHHhhhhh-----hheeecCCccEEEeccccceeEEEEecC
Confidence 99998743110 011111 111 33445555554 6788888898887766544333345543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=151.56 Aligned_cols=215 Identities=16% Similarity=0.204 Sum_probs=165.9
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc----C-CcceEEEE-ecCCccEEEE
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV----N-SHVSRQYF-LGHTGAVLCL 576 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~----~-s~~~~~~l-~gH~~~V~~l 576 (1471)
.....|.-.++++++.++.. +.+.++.||+|.- |+.+.+-+... .|.. . .+.+.+.- .+|...+.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~----~~fsask~g~i~k--w~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK----RVFSASKDGTILK--WDVLTGKKDRY-IIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEeecccc----ceeecCCCcceee--eehhcCccccc-ccccchhhhhccCCCCcccccccceeEEE
Confidence 44578889999998666665 6899999997766 65433321000 1111 0 11111111 4899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000473 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1471)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl 656 (1471)
++++| +++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|... .+.+.+++.|++|++|++
T Consensus 209 avS~D---------gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 209 AVSSD---------GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWSI 273 (479)
T ss_pred EEcCC---------CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEeh
Confidence 99998 899999999999999999999999999999999999999876 678999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccc
Q 000473 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1471)
Q Consensus 657 ~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~ 736 (1471)
+....+.++-||.+.|..+.-..-++.+-+|+.| +++++|++.. +.--.+.||.+.+-++.|.++
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD--------rT~rlwKi~e-esqlifrg~~~sidcv~~In~------ 338 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD--------RTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND------ 338 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEecccc--------ceeEEEeccc-cceeeeeCCCCCeeeEEEecc------
Confidence 9999999999999999999988888888888898 9999999943 333466788766666655532
Q ss_pred cceEEcCCccccccceeeccCCceEeeccc
Q 000473 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 737 sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
.++++-+.||.|-.|.+.
T Consensus 339 ------------~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 339 ------------EHFVSGSDNGSIALWSLL 356 (479)
T ss_pred ------------cceeeccCCceEEEeeec
Confidence 233344458999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=141.85 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=145.3
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+++.++.+++++...... .. ...|..++.++++..+. .+++|+.||.|+.++..
T Consensus 28 LLvssWDgslrlYdv~~~~l----~~-~~~~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln-------------- 83 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSL----KL-KFKHGAPLLDCAFADES-----TIVTGGLDGQVRRYDLN-------------- 83 (323)
T ss_pred EEEEeccCcEEEEeccchhh----hh-heecCCceeeeeccCCc-----eEEEeccCceEEEEEec--------------
Confidence 55666778888888766422 22 23467788887744433 69999999999995544
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
++ ....+..|..+|.|+.+.+. ...+++||+|++|++||.+.......+. ....|.++...
T Consensus 84 -~~-~~~~igth~~~i~ci~~~~~---------~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~------- 144 (323)
T KOG1036|consen 84 -TG-NEDQIGTHDEGIRCIEYSYE---------VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS------- 144 (323)
T ss_pred -CC-cceeeccCCCceEEEEeecc---------CCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-------
Confidence 22 23456679999999999986 7889999999999999998654444443 33467777654
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---------------cEEE---------------------------------EecCCC
Q 000473 638 WSDCFLSVGEDFSVALASLETL---------------RVER---------------------------------MFPGHP 669 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~---------------~~l~---------------------------------~~~gh~ 669 (1471)
++.|+.|+.|..|.+||+++. ++++ .|..|.
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 447777777888888887653 1222 222332
Q ss_pred C---------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 670 N---------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 670 ~---------~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
. +|++++|+|-.++|+||+.| |.|.+||+.+.+.+..+.+-...+-...|+
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD--------G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSD--------GIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCC--------ceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 1 68999999999999999999 999999999999999988875555555566
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=143.65 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=140.3
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~ 584 (1471)
+.+|.+.|..+.+.+ |+-+.+++|++|.+|.||... .++ ...+. -+++..|.||..+|.-++|||.
T Consensus 77 v~GHt~~vLDi~w~P---fnD~vIASgSeD~~v~vW~IP--e~~----l~~~l--tepvv~L~gH~rrVg~V~wHPt--- 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP---FNDCVIASGSEDTKVMVWQIP--ENG----LTRDL--TEPVVELYGHQRRVGLVQWHPT--- 142 (472)
T ss_pred ccCccccccccccCc---cCCceeecCCCCceEEEEECC--Ccc----cccCc--ccceEEEeecceeEEEEeeccc---
Confidence 578999888876433 222389999999999995432 111 00111 2678899999999999999996
Q ss_pred cccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1471)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~ 664 (1471)
-.+.|+|++.|.+|.+||+.+|+.+-++. |...|+++.|+.+ |..+++.+.|+.|||||.++++.+..
T Consensus 143 -----A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 143 -----APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred -----chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEeee
Confidence 27899999999999999999999888887 9999999999999 99999999999999999999999998
Q ss_pred ecCCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 665 FPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 665 ~~gh~~-~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
-.+|.+ ....+.|-.++.++-||-. .-++ ..+-+||..+-
T Consensus 211 ~~~heG~k~~Raifl~~g~i~tTGfs---r~se--Rq~aLwdp~nl 251 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGKIFTTGFS---RMSE--RQIALWDPNNL 251 (472)
T ss_pred cccccCCCcceeEEeccCceeeeccc---cccc--cceeccCcccc
Confidence 888876 5677889889985544432 3444 89999997653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=139.52 Aligned_cols=168 Identities=19% Similarity=0.289 Sum_probs=129.1
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
.+|.-.|++....| +....+.+++.|.+++| || ..+.+....|+ -.+.|.+-+++|.-
T Consensus 98 ~~Hky~iss~~WyP---~DtGmFtssSFDhtlKV--WD-------------tnTlQ~a~~F~-me~~VYshamSp~a--- 155 (397)
T KOG4283|consen 98 NGHKYAISSAIWYP---IDTGMFTSSSFDHTLKV--WD-------------TNTLQEAVDFK-MEGKVYSHAMSPMA--- 155 (397)
T ss_pred ccceeeeeeeEEee---ecCceeecccccceEEE--ee-------------cccceeeEEee-cCceeehhhcChhh---
Confidence 45666677654322 11127889999999999 33 33333333343 34568888888861
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEE
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~ 664 (1471)
....++++|..|-.|++-|+.+|.+-+++.+|.+.|.++.|+|.. .-.|++|+.||.|++||++.- .|.+.
T Consensus 156 ---~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgsaDg~irlWDiRrasgcf~~ 227 (397)
T KOG4283|consen 156 ---MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS-----EWVLATGSADGAIRLWDIRRASGCFRV 227 (397)
T ss_pred ---hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc-----eeEEEecCCCceEEEEEeecccceeEE
Confidence 114588899999999999999999999999999999999999983 337889999999999999864 34444
Q ss_pred e--------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 665 F--------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 665 ~--------------~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
+ ..|.+.|..++|+.++.++++.+.| ..+++|++.+|+-
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd--------~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD--------DRIRVWNMESGRN 280 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccCc--------cceEEeecccCcc
Confidence 3 3566778999999999999999998 8999999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-12 Score=153.75 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=175.5
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+..+++.++.|+..+... .-.++..+...|.+++..+. .+++|+.+++|.++.++.
T Consensus 28 i~tcgsdg~ir~~~~~sd~e---~P~ti~~~g~~v~~ia~~s~------~f~~~s~~~tv~~y~fps------------- 85 (933)
T KOG1274|consen 28 ICTCGSDGDIRKWKTNSDEE---EPETIDISGELVSSIACYSN------HFLTGSEQNTVLRYKFPS------------- 85 (933)
T ss_pred EEEecCCCceEEeecCCccc---CCchhhccCceeEEEeeccc------ceEEeeccceEEEeeCCC-------------
Confidence 45566778889998766511 11122236677777663333 589999999999976652
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
+.....|..-+-++.+++|+.+ |.+++.||.|-.|++-++.+......+.+|.++|.+|.|+|.
T Consensus 86 --~~~~~iL~Rftlp~r~~~v~g~---------g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~----- 149 (933)
T KOG1274|consen 86 --GEEDTILARFTLPIRDLAVSGS---------GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK----- 149 (933)
T ss_pred --CCccceeeeeeccceEEEEecC---------CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-----
Confidence 2222233334567899999876 899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCC--------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGH--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh--------~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
+++||+.+.||.|++||++++.+..++.+- ...+..++|+|++..+++-+.| +.|++|+..++
T Consensus 150 -~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~~w 220 (933)
T KOG1274|consen 150 -GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRKGW 220 (933)
T ss_pred -CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccCCc
Confidence 999999999999999999999887766532 2346789999998888888888 99999999999
Q ss_pred eEEEEEeCCCC--CceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccc
Q 000473 710 ARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1471)
Q Consensus 710 ~~~~~l~gH~~--~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~ 770 (1471)
+....+.+-.. .....+|. ++|.+.+++.+ |+.|.+|+.+..++
T Consensus 221 e~~f~Lr~~~~ss~~~~~~ws------------PnG~YiAAs~~-----~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWS------------PNGKYIAASTL-----DGQILVWNVDTHER 266 (933)
T ss_pred eeheeecccccccceEEEEEc------------CCCcEEeeecc-----CCcEEEEecccchh
Confidence 99888876332 23334444 34566666666 99999999986555
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=154.23 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=157.3
Q ss_pred cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
++..|...++++.+.+... -++++++||.|.+|+++. ...-....-+++.+|.+|.++|.|+++.++
T Consensus 289 tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk-------~~~s~~~~~epi~tfraH~gPVl~v~v~~n-- 355 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQK-------AKKSAEKDVEPILTFRAHEGPVLCVVVPSN-- 355 (577)
T ss_pred eeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhcc-------cCCccccceeeeEEEecccCceEEEEecCC--
Confidence 3455666677766333222 799999999999955531 111122334788999999999999999987
Q ss_pred CcccCcCCCEEEEEECCCcEEEEECCC----------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000473 584 TAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1471)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtI~lWDl~t----------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~l 653 (1471)
++++.||+.||+|+.|++.. ..+...+.||++.|+.+++++. .+.|++++.||+|++
T Consensus 356 -------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 356 -------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDGTVRL 422 (577)
T ss_pred -------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCceEEe
Confidence 89999999999999996541 1245788999999999999998 678999999999999
Q ss_pred EECCCCcE--------------------------------------------EEEecC-----C--CCCcEEEEEcCCCC
Q 000473 654 ASLETLRV--------------------------------------------ERMFPG-----H--PNYPAKVVWDCPRG 682 (1471)
Q Consensus 654 Wdl~t~~~--------------------------------------------l~~~~g-----h--~~~V~~v~~spdg~ 682 (1471)
|+.....+ +..+.. . ...+..|.++|...
T Consensus 423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 98754322 011100 0 12467789999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEe
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~ 762 (1471)
+.+++..| +.|+++|..+|.++..+..|...+..+.+.+ +|-. +...+.|++++.
T Consensus 503 ~~~~~hed--------~~Ir~~dn~~~~~l~s~~a~~~svtslai~~------------ng~~-----l~s~s~d~sv~l 557 (577)
T KOG0642|consen 503 ITFTAHED--------RSIRFFDNKTGKILHSMVAHKDSVTSLAIDP------------NGPY-----LMSGSHDGSVRL 557 (577)
T ss_pred eeEecccC--------CceecccccccccchheeeccceecceeecC------------CCce-----EEeecCCceeeh
Confidence 99999998 9999999999999999999988777775442 1122 223344999999
Q ss_pred ecc
Q 000473 763 SQI 765 (1471)
Q Consensus 763 w~l 765 (1471)
|++
T Consensus 558 ~kl 560 (577)
T KOG0642|consen 558 WKL 560 (577)
T ss_pred hhc
Confidence 986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=147.94 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=161.3
Q ss_pred cccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000473 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1471)
Q Consensus 482 ~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1471)
...+.|++||+.. ..+...+++|...|+++.|.-... .|++++..|.|.|... .++.
T Consensus 98 G~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~De----yiAsvs~gGdiiih~~---------------~t~~ 154 (673)
T KOG4378|consen 98 GQSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTDE----YIASVSDGGDIIIHGT---------------KTKQ 154 (673)
T ss_pred CcCceeeehhhHH----HHHhhhccCCcceeEEEEecCCcc----eeEEeccCCcEEEEec---------------ccCc
Confidence 3557899999874 244566789999999998765555 7999999999998432 2333
Q ss_pred eEEEEecC-CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEE-eccCCCEEEEEECCCCCCCCCC
Q 000473 562 SRQYFLGH-TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 562 ~~~~l~gH-~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~-~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
....|..- ...|.-|.|+|. ...+|.+++.+|.|.+||+....+++.+ ..|..|...|+|+|.+ .
T Consensus 155 ~tt~f~~~sgqsvRll~ys~s--------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----e 221 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPS--------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----E 221 (673)
T ss_pred cccceecCCCCeEEEeecccc--------cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-----c
Confidence 33344332 345567889985 2568889999999999999877766544 5799999999999985 6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCC
Q 000473 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGT 718 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH 718 (1471)
.+|+++|.|+.|.+||....+....+. ...+...|+|.++|-+|+.|... |.|+.||++. ..++.++..|
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCC--------ceEEEEecccCCCCceEeeec
Confidence 699999999999999999776655443 35578999999999999999888 9999999985 6789999999
Q ss_pred CCCceeeeeee
Q 000473 719 ASHSMFDHFCK 729 (1471)
Q Consensus 719 ~~~v~~~~~~~ 729 (1471)
.+.|+++.|-+
T Consensus 293 ~~sVt~vafq~ 303 (673)
T KOG4378|consen 293 DASVTRVAFQP 303 (673)
T ss_pred ccceeEEEeee
Confidence 99999988774
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-12 Score=137.95 Aligned_cols=170 Identities=19% Similarity=0.324 Sum_probs=130.6
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC
Q 000473 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1471)
Q Consensus 523 f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D 600 (1471)
|++. .++.|+.||.+.||+++ +...-+.|.+|..+|+|++|++| |+.|+|+|.|
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~---------------T~~iar~lsaH~~pi~sl~WS~d---------gr~LltsS~D 86 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFD---------------TFRIARMLSAHVRPITSLCWSRD---------GRKLLTSSRD 86 (405)
T ss_pred eccCcceeeeeccCCcEEEEEcc---------------ccchhhhhhccccceeEEEecCC---------CCEeeeecCC
Confidence 5543 89999999999995554 23445778999999999999998 8999999999
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCC-----------------------------------------CCCCCC
Q 000473 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQ-----------------------------------------TEHPWS 639 (1471)
Q Consensus 601 gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~-----------------------------------------~~~~~~ 639 (1471)
..|++||+..|.+++.+. ...+|+...|+|.. ...+.|
T Consensus 87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 999999999999888774 34566666666531 125678
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCC-CC-----------------------------------------------
Q 000473 640 DCFLSVGEDFSVALASLETLRVERMFPGHP-NY----------------------------------------------- 671 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~-~~----------------------------------------------- 671 (1471)
+++.+|...|.+.++|..+.+++..+.--. ..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 899999999999999988776655443111 11
Q ss_pred ------cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000473 672 ------PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1471)
Q Consensus 672 ------V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~ 724 (1471)
-.+++|+.+|.|+..|+.- ...+|||.-..|.+++.|.|..+....
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred HHhhhhhhheeecCCccEEEecccc-------ceeEEEEecCCcceeeeecCCchhhee
Confidence 1346778888888776643 268999999999999999999866555
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=148.47 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=158.0
Q ss_pred CCCCcccceeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC
Q 000473 469 ENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH 548 (1471)
Q Consensus 469 ~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~ 548 (1471)
-+||. .+.+..+-+++.+||+..+.+..+.. +........+++..++.. ..++++.||.|.| ||
T Consensus 474 ~pdgr---tLivGGeastlsiWDLAapTprikae--ltssapaCyALa~spDak----vcFsccsdGnI~v--wD----- 537 (705)
T KOG0639|consen 474 LPDGR---TLIVGGEASTLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDAK----VCFSCCSDGNIAV--WD----- 537 (705)
T ss_pred cCCCc---eEEeccccceeeeeeccCCCcchhhh--cCCcchhhhhhhcCCccc----eeeeeccCCcEEE--EE-----
Confidence 34562 46777788999999998877743221 111112223333233332 5677789999999 33
Q ss_pred CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEE
Q 000473 549 NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII 628 (1471)
Q Consensus 549 d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~ 628 (1471)
+.....++.|.||++.+.|+.+++| |..|-||+-|.+||.||+++++.+... .....|.++-
T Consensus 538 --------Lhnq~~VrqfqGhtDGascIdis~d---------GtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg 599 (705)
T KOG0639|consen 538 --------LHNQTLVRQFQGHTDGASCIDISKD---------GTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLG 599 (705)
T ss_pred --------cccceeeecccCCCCCceeEEecCC---------CceeecCCCccceeehhhhhhhhhhhh-hhhhhheecc
Confidence 3445778999999999999999997 899999999999999999988765332 2346799999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 629 fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
++|. +++++.|-+.+.|.|.... +...+++.-|.+.|.+++|.+-|+++++.+.| +-+..|.+.-
T Consensus 600 ~cP~------~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkD--------nlLnawrtPy 664 (705)
T KOG0639|consen 600 YCPT------GDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD--------NLLNAWRTPY 664 (705)
T ss_pred cCCC------ccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCch--------hhhhhccCcc
Confidence 9998 8999999999999998865 44457778899999999999999999999999 8999999988
Q ss_pred CeEEEEEeCCCCCceee
Q 000473 709 GARERVLRGTASHSMFD 725 (1471)
Q Consensus 709 g~~~~~l~gH~~~v~~~ 725 (1471)
|..+-.... .+.|++.
T Consensus 665 GasiFqskE-~SsVlsC 680 (705)
T KOG0639|consen 665 GASIFQSKE-SSSVLSC 680 (705)
T ss_pred ccceeeccc-cCcceee
Confidence 887766543 3345554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=144.88 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=133.0
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
.+|...|-++...... -+.|++|+.|.+|++ ||+.++++..++..|.+.|.++.|+|.
T Consensus 240 ~gHTdavl~Ls~n~~~---~nVLaSgsaD~TV~l---------------WD~~~g~p~~s~~~~~k~Vq~l~wh~~---- 297 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNF---RNVLASGSADKTVKL---------------WDVDTGKPKSSITHHGKKVQTLEWHPY---- 297 (463)
T ss_pred ccchHHHHHHHhcccc---ceeEEecCCCceEEE---------------EEcCCCCcceehhhcCCceeEEEecCC----
Confidence 4677666665433222 248999999999999 456788999999999999999999996
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEE
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~ 664 (1471)
...+|++||.|++|.+.|.+........-...+.|..++|.|.. ...++++..||+|+-+|+|.. +++.+
T Consensus 298 ----~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 298 ----EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred ----CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----ceeEEEecCCceEEeeecCCCCCceeE
Confidence 38999999999999999998533332222345679999999974 568888999999999999875 89999
Q ss_pred ecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 665 FPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 665 ~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+..|.++|.++++++.-. +|++++.| ++|++|++..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d--------~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTD--------KVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCcceeecccc--------ceEEEEeecC
Confidence 999999999999988654 67777777 9999999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-11 Score=136.09 Aligned_cols=141 Identities=15% Similarity=0.228 Sum_probs=106.3
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccE--EEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAV--LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 528 lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V--~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
|+..+.+|.|.+ |+ +....+++.+.. .+.| ++++.+++ +.+|++||..|.|.|
T Consensus 359 l~~~~~~GeV~v--~n-------------l~~~~~~~rf~D-~G~v~gts~~~S~n---------g~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 359 LLASGGTGEVYV--WN-------------LRQNSCLHRFVD-DGSVHGTSLCISLN---------GSYLATGSDSGIVNI 413 (514)
T ss_pred EEEEcCCceEEE--Ee-------------cCCcceEEEEee-cCccceeeeeecCC---------CceEEeccCcceEEE
Confidence 444556777777 33 333355555542 2233 45566665 789999999999999
Q ss_pred EECCC------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEecCCC---CCcEE
Q 000473 606 WDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLETLRVERMFPGHP---NYPAK 674 (1471)
Q Consensus 606 WDl~t------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s--~DgsV~lWdl~t~~~l~~~~gh~---~~V~~ 674 (1471)
||.++ .+++..+..-+..|+++.|+|+ ++.+|-+| .+..+||..+.+......++... +.|+|
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 99753 4567777777888999999999 78766555 57899999998877777776443 46899
Q ss_pred EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 675 v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
++|+|.+.||++|..+ |.|.+|.+.
T Consensus 488 ~aFSP~sG~lAvGNe~--------grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEA--------GRVHLFKLH 512 (514)
T ss_pred EEecCCCceEEeecCC--------CceeeEeec
Confidence 9999999999999998 999999864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=149.75 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=156.6
Q ss_pred ecccccCccccccccCCCCCCCccc-cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRD-DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~-~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
..+...+-|++||+..+.......+ ........+.++.+.++.+ .|++|++-.++.| ||+-.
T Consensus 434 VyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr----tLivGGeastlsi--WDLAa----------- 496 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR----TLIVGGEASTLSI--WDLAA----------- 496 (705)
T ss_pred eEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc----eEEeccccceeee--eeccC-----------
Confidence 4455668899999976532211110 0112345677777666665 8999999889999 44211
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
.+......+..-.-...+|+.+|| .++.+++..||.|.|||+.....++.|.+|+..+.||.++++
T Consensus 497 pTprikaeltssapaCyALa~spD---------akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d----- 562 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPD---------AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD----- 562 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCc---------cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC-----
Confidence 112222233333445778899998 899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
|..|-||+-|.+||.||+++++.+.... ..+.|.++...|++.+|++|-++ +.|.|-.. ++..-..+.-
T Consensus 563 -GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyqlhl 631 (705)
T KOG0639|consen 563 -GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQLHL 631 (705)
T ss_pred -CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc--------CcEEEEec-CCccceeecc
Confidence 9999999999999999999998765532 45679999999999999999988 77766654 3444566778
Q ss_pred CCCCceeeeee
Q 000473 718 TASHSMFDHFC 728 (1471)
Q Consensus 718 H~~~v~~~~~~ 728 (1471)
|.+.|+.+.|.
T Consensus 632 heScVLSlKFa 642 (705)
T KOG0639|consen 632 HESCVLSLKFA 642 (705)
T ss_pred cccEEEEEEec
Confidence 88888888777
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=162.73 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=154.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.|+.|.+||.|.+|+-+-+.. -.....+.++..|++.|..|.|++. .+++|+||+.||.|.||
T Consensus 82 lIaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~~--------q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNPF--------QGNLLASGADDGEILIW 144 (1049)
T ss_pred eeeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeecccc--------CCceeeccCCCCcEEEe
Confidence 588889999999954331100 1122456677889999999999997 26799999999999999
Q ss_pred ECCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCC
Q 000473 607 DLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRG 682 (1471)
Q Consensus 607 Dl~tg~~l~~~~--~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~--~V~~v~~spdg~ 682 (1471)
|+..-+.-..+- .-...|.+++|+... .+.|++++.++.+.|||++..+.+..+..|.. .+..++|+|++.
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 998754333331 235679999998764 78999999999999999999888887776655 467899999875
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCce
Q 000473 683 -YIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1471)
Q Consensus 683 -~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ti 760 (1471)
.|++++.| |..-.|.+||++. -..++++++|...++.+.+|+. ....++++.+|+++
T Consensus 220 Tql~~As~d-----d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~----------------D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 220 TQLLVASGD-----DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ----------------DPRLLLSSGKDNRI 278 (1049)
T ss_pred eeeeeecCC-----CCCceeEeecccccCCchhhhcccccceeeeccCCC----------------CchhhhcccCCCCe
Confidence 56666666 6668999999985 4678999999999999989943 23456778889999
Q ss_pred Eeecccc
Q 000473 761 RQSQIQN 767 (1471)
Q Consensus 761 r~w~l~~ 767 (1471)
..|+.++
T Consensus 279 i~wN~~t 285 (1049)
T KOG0307|consen 279 ICWNPNT 285 (1049)
T ss_pred eEecCCC
Confidence 9998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=147.18 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=161.8
Q ss_pred eeecccccCccccccccCCCCCC----CccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g----~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~ 552 (1471)
.+.+.+.++++++|++....+.. ..+.+|.+|.+.|-|+.+.+... .+.+|+.||+|+.|+.. .++|. -
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~w~~p--~n~dp-~ 380 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRCWNLP--PNQDP-D 380 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce----EEEeeccCceeeeeccC--CCCCc-c
Confidence 46677788999999995433322 45678899999999999877776 79999999999995433 22211 0
Q ss_pred CccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe---ccC--------
Q 000473 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHV-------- 621 (1471)
Q Consensus 553 ~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~---~H~-------- 621 (1471)
...|. .....+|.||++.|+.+++|+. ...|+++|.|||++.|+.....+ .+|. .|.
T Consensus 381 ds~dp--~vl~~~l~Ghtdavw~l~~s~~---------~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 381 DSYDP--SVLSGTLLGHTDAVWLLALSST---------KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred cccCc--chhccceeccccceeeeeeccc---------ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 01111 1345678999999999999986 67899999999999999864443 1110 000
Q ss_pred -----------------------------------------CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000473 622 -----------------------------------------APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1471)
Q Consensus 622 -----------------------------------------~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~ 660 (1471)
..+..+..+ |......++..|+.|+++|..+++
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~------~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH------PTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec------CCCCeeEecccCCceecccccccc
Confidence 112233333 447889999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000473 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 661 ~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~ 720 (1471)
+++....|...++++++.|+|.+|++++.| +.|++|.+....++.....|..
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d--------~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHD--------GSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCC--------ceeehhhccchheeeccccccc
Confidence 999999999999999999999999999999 9999999998888888777764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=137.24 Aligned_cols=102 Identities=27% Similarity=0.376 Sum_probs=91.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+|.|+.-|.|+|.+ ..++++...+.||.+.|+.+.++|+ ..++++|+|.|.+||+|
T Consensus 107 ~la~~G~~GvIrVid---------------~~~~~~~~~~~ghG~sINeik~~p~--------~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVID---------------VVSGQCSKNYRGHGGSINEIKFHPD--------RPQLVLSASKDHSVRLW 163 (385)
T ss_pred eEEeecceeEEEEEe---------------cchhhhccceeccCccchhhhcCCC--------CCcEEEEecCCceEEEE
Confidence 467777889999943 4456788889999999999999998 37899999999999999
Q ss_pred ECCCCceEEEEe---ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000473 607 DLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 607 Dl~tg~~l~~~~---~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~ 657 (1471)
++++..++..|- +|.+.|.++.|+++ |..|+|+|.|+++++|++.
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecC
Confidence 999999998874 69999999999999 9999999999999999997
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=133.70 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=153.1
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-E-ecCCccEEEEEEec
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-F-LGHTGAVLCLAAHR 580 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l-~gH~~~V~~la~sp 580 (1471)
..+++|.+.|+++++.++.. .+++.+.|+.|++|+.+.+.. +..++++. + .+| -+.+.|.|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~----------~eHr~~R~nve~dh---pT~V~Fap 142 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFEN----------KEHRCIRQNVEYDH---PTRVVFAP 142 (420)
T ss_pred hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhh----------hhhhHhhccccCCC---ceEEEECC
Confidence 45789999999999888887 799999999999965542211 11122211 1 234 57789999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCC---ceEE---------EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLIT---------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg---~~l~---------~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D 648 (1471)
| -..++++.-...++++|-+... ..-+ .-+.|.-.|..+-..-. +.+++|++.|
T Consensus 143 D--------c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~------~k~imsas~d 208 (420)
T KOG2096|consen 143 D--------CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN------AKYIMSASLD 208 (420)
T ss_pred C--------cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC------ceEEEEecCC
Confidence 8 2567888888889999987532 2111 11235556666665555 7899999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCe-----EEEEEeCCCC
Q 000473 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGA-----RERVLRGTAS 720 (1471)
Q Consensus 649 gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~---tg~-----~~~~l~gH~~ 720 (1471)
..|.||+++ |+.+..+......-...+.||+|+|+++++.. --|+||++- .|+ .+..|.||++
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhheeccchh
Confidence 999999999 89888887766677888999999999998887 679999973 332 3567899999
Q ss_pred CceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccc
Q 000473 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 721 ~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~ 766 (1471)
.|....|.+. +..++++++||++|+|+..
T Consensus 280 aV~~~aFsn~-----------------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 280 AVLAAAFSNS-----------------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred heeeeeeCCC-----------------cceeEEEecCCcEEEeecc
Confidence 9998877731 3346788899999999863
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=160.98 Aligned_cols=217 Identities=15% Similarity=0.151 Sum_probs=163.9
Q ss_pred eecccccCccccccccCCCC--CCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~--~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
++....+|.+.+|+...-.. .-..+.....|.+.|..+.+.. |.++.+++|..||+|.||+...+... ..
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~---~q~nlLASGa~~geI~iWDlnn~~tP---~~-- 154 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP---FQGNLLASGADDGEILIWDLNKPETP---FT-- 154 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc---cCCceeeccCCCCcEEEeccCCcCCC---CC--
Confidence 45556677888888765211 1134455678999999976433 44468999999999999554422110 00
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCC--CEEEEEECCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQ 633 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~--~V~~l~fspd~ 633 (1471)
. + -..-.+.|.||+|... ..+.|+||+.+|.+.|||++..+.+-.+..|.+ .+..+.|+|+.
T Consensus 155 -~--~-----~~~~~~eI~~lsWNrk--------vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 155 -P--G-----SQAPPSEIKCLSWNRK--------VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred -C--C-----CCCCcccceEeccchh--------hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 0 0 0113467999999875 378999999999999999999988888877765 47789999995
Q ss_pred CCCCCCCEEEEEeCC---CcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 634 TEHPWSDCFLSVGED---FSVALASLET-LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 634 ~~~~~~~~l~S~s~D---gsV~lWdl~t-~~~l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
...+++++.| -.|.+||++. ..+++.+.+|...|.++.|.+.+ .+|++++.| +.|.+|+.+|
T Consensus 219 -----aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD--------~~ii~wN~~t 285 (1049)
T KOG0307|consen 219 -----ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD--------NRIICWNPNT 285 (1049)
T ss_pred -----ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC--------CCeeEecCCC
Confidence 4566666655 4799999985 45678889999999999999987 788888888 9999999999
Q ss_pred CeEEEEEeCCCCCceeeeeeecc
Q 000473 709 GARERVLRGTASHSMFDHFCKGI 731 (1471)
Q Consensus 709 g~~~~~l~gH~~~v~~~~~~~~~ 731 (1471)
|+.+..+.....-..-++||++.
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCC
Confidence 99999998877777778999753
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=125.44 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=133.3
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
..+++|.+.+..++ |+-+.|++|+ ||.|+-|.|.........-++|.... +.++=.-.--.|+++...|.
T Consensus 56 v~eqahdgpiy~~~------f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~--P~~~~~~evPeINam~ldP~- 125 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLA------FHDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKI--PMQVDAVEVPEINAMWLDPS- 125 (325)
T ss_pred eeccccCCCeeeee------eehhheeecc-CceEEEeeehhhhhhccchhhhhhcC--ccccCcccCCccceeEeccC-
Confidence 34588999999987 3333455544 69999999985544222233455432 22210111235788888886
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
.+-++.++.|+.+.-||+++|+..+++++|+..|.++.-... ...++||++||++|+||+++++++
T Consensus 126 --------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 126 --------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred --------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEecccccee
Confidence 455556668999999999999999999999999999987544 457899999999999999999999
Q ss_pred EEecCCCC----------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE--eCCCCCceee
Q 000473 663 RMFPGHPN----------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL--RGTASHSMFD 725 (1471)
Q Consensus 663 ~~~~gh~~----------~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l--~gH~~~v~~~ 725 (1471)
.++..... .|.++ .-+.++|++|+. -.+.+|.+++.++..++ .+|...+++.
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDFV 255 (325)
T ss_pred EEeccccChhhcCcccCceeEEE--eccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeeee
Confidence 88864322 23344 446779998876 48999999998776655 4555555544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=139.38 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=167.8
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
+.+..+..+++|......+--.......+ ..-.|+.+.+... .+++|+.+|.++| |+ .+
T Consensus 51 as~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~----y~~sgG~~~~Vki--wd-------------l~ 109 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSL----YEISGGQSGCVKI--WD-------------LR 109 (673)
T ss_pred eecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcce----eeeccCcCceeee--hh-------------hH
Confidence 44556677788887665332222222222 2334554444444 6899999999999 33 34
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc-CCCEEEEEECCCCCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H-~~~V~~l~fspd~~~~~ 637 (1471)
...+++.+++|+..|+++.|.-. ..+|++++..|.|.+..+.++..-..|..- ...|.-+.|+|..
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~---------DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk---- 176 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNT---------DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK---- 176 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCC---------cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc----
Confidence 44677889999999999999875 799999999999999999999888788655 4456688999973
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 638 WSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 638 ~~~~l~S~s~DgsV~lWdl~t~~~l~~~-~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
...|.+++.||.|.|||++...++..+ ..|..+...|+|+|... .|++-+.| ..|++||+...+...++
T Consensus 177 -r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 177 -RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDIRSQASTDRL 247 (673)
T ss_pred -ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc--------ceEEEeeccccccccee
Confidence 447888999999999999988877554 57999999999999755 66777777 99999999987776666
Q ss_pred eCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeeccccccccccccc
Q 000473 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1471)
Q Consensus 716 ~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~~~~~~~~~ 776 (1471)
.... +-..+.|.+ +|.+.+.+.. .|.+.+++++...+..+-++
T Consensus 248 ~y~~-Plstvaf~~------------~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 248 TYSH-PLSTVAFSE------------CGTYLCAGNS-----KGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred eecC-CcceeeecC------------CceEEEeecC-----CceEEEEecccCCCCceEee
Confidence 5432 223333441 2223222222 67788888876665554443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=127.52 Aligned_cols=214 Identities=14% Similarity=0.211 Sum_probs=149.6
Q ss_pred EeeccccccccCCCCcccceeecccccCccccccccCCC--CCC---CccccccccCccEEEEEeeccccccCC----EE
Q 000473 458 VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSR--QAG---DGRDDFVHKEKIVSSSMVISESFYAPY----AI 528 (1471)
Q Consensus 458 ~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~--~~g---~~~~~~~~h~~~Vts~~~is~~~f~P~----~l 528 (1471)
.+|.-+. -|. .+++.+.++++.+|+-.... ..+ ....++...+..|+.+. |.|. .+
T Consensus 65 V~WAhPE------fGq---vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~------FaP~hlGLkl 129 (361)
T KOG2445|consen 65 VVWAHPE------FGQ---VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVK------FAPKHLGLKL 129 (361)
T ss_pred EEecCcc------ccc---eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEE------ecchhcceEE
Confidence 5676654 342 37788889999999974221 111 12234455556677765 7776 79
Q ss_pred EEEEcCCcEEEEEecccccCCCCCCccccCCcc--eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC-----C
Q 000473 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV--SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----C 601 (1471)
Q Consensus 529 v~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~--~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D-----g 601 (1471)
++++.||.++|+... ... ....|.+.... ..-....|..+..|+.|+| ++-..++|+.|+.+ +
T Consensus 130 A~~~aDG~lRIYEA~--dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~------sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 130 AAASADGILRIYEAP--DPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP------SRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred EEeccCcEEEEEecC--Ccc--ccccchhhhhhhhccCCcccccCcceEEeecc------ccccCceEEEEcccCCcccc
Confidence 999999999996432 111 11123332110 0111224667788999987 34457889999877 5
Q ss_pred cEEEEECCCCc----eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC------------------
Q 000473 602 SIRIWDLGSGN----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL------------------ 659 (1471)
Q Consensus 602 tI~lWDl~tg~----~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~------------------ 659 (1471)
.+++|....+. .+..+.+|+.+|+.++|.|+. .+.-+.+++++.|| |+||.++..
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~--Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l 276 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI--GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL 276 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcceeeeecccc--CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc
Confidence 78888875432 345677999999999999983 34456899999999 999999731
Q ss_pred --cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 660 --RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 660 --~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
+.+..+.+|.+.|+.+.|.-.|..|++.+.| |.||+|...
T Consensus 277 ~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD--------G~VRLWkan 318 (361)
T KOG2445|consen 277 PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD--------GCVRLWKAN 318 (361)
T ss_pred ceEEeeeccCCCCceEEEEEeeeeeEEeecCCC--------ceeeehhhh
Confidence 2455678999999999999999999999988 999999753
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=130.31 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=111.5
Q ss_pred cCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000473 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1471)
Q Consensus 568 gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~ 647 (1471)
.|...-..++|.-+. . ....+++.|+.-|.|++.|+.++++...+.+|.+.|..+.+.|+. .++++|+|.
T Consensus 87 d~~Esfytcsw~yd~--~---~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~Sk 156 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDS--N---TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASK 156 (385)
T ss_pred CCCcceEEEEEEecC--C---CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecC
Confidence 366777888887762 1 126789999999999999999999999999999999999999985 689999999
Q ss_pred CCcEEEEECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 648 DFSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 648 DgsV~lWdl~t~~~l~~~---~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
|.+||+||+++..|+..| .||.+.|.++.|+++|.+|++++.| .++++|++...+
T Consensus 157 D~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD--------hslk~W~l~~~~ 214 (385)
T KOG1034|consen 157 DHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD--------HSLKLWRLNVKE 214 (385)
T ss_pred CceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc--------ceEEEEecChhH
Confidence 999999999999999887 4799999999999999999999999 999999998543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=125.89 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=90.2
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~ 586 (1471)
.|.+.|.++.|-+... +=+.|+.+..+.+++++ |+..+.+....+.-.+-.|..+.+-||
T Consensus 203 sh~qpvlsldyas~~~----rGisgga~dkl~~~Sl~-----------~s~gslq~~~e~~lknpGv~gvrIRpD----- 262 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCD----RGISGGADDKLVMYSLN-----------HSTGSLQIRKEITLKNPGVSGVRIRPD----- 262 (323)
T ss_pred hccCcceeeeechhhc----CCcCCCccccceeeeec-----------cccCcccccceEEecCCCccceEEccC-----
Confidence 4556666666443333 55667777777776554 222111111122222335788888887
Q ss_pred cCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1471)
Q Consensus 587 ~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl 656 (1471)
++.++|+++|+.|||+.-++.+++..++.|.+.|.+++|+|+ ...++.++.|..|.+|++
T Consensus 263 ----~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 ----GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred ----CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC------CchhhhccCCceEEeeec
Confidence 899999999999999999999999999999999999999999 789999999999999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=123.04 Aligned_cols=163 Identities=22% Similarity=0.357 Sum_probs=125.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++.|..+|+|.+.....+..+.. ..+....+....+|.++|+.++|+ ..+|++|+. |.|+=|
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~-----------d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFH-----------DDFLLSGGD-GLVYGW 86 (325)
T ss_pred EEEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeee-----------hhheeeccC-ceEEEe
Confidence 689999999999987765544311 111224455668999999999998 367888865 999988
Q ss_pred ECCCCc-------eE-EEEecc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000473 607 DLGSGN-------LI-TVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 607 Dl~tg~-------~l-~~~~~H-----~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
.-+... +. .....| ...|+++.+.|. .+.++.++.|+.+.-||+++|+..+++.||.++|-
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 654211 11 111122 246888999888 66777777999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~ 720 (1471)
+++-......+++|++| |++||||.+|++.+.++.....
T Consensus 161 ~vv~R~~~~qilsG~ED--------GtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAED--------GTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred eeeecccCcceeecCCC--------ccEEEEeccccceeEEeccccC
Confidence 99997777788899999 9999999999999988875543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=138.71 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=127.7
Q ss_pred ccccCccEEEEEeeccccccCC----EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000473 505 FVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~----~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~sp 580 (1471)
..-+..+|++++ |+|. .++.|...|.|-+|++++ .+ .+ ..-+..+.+|.++|.++.|+|
T Consensus 182 ~kv~~~Rit~l~------fHPt~~~~lva~GdK~G~VG~Wn~~~-~~-------~d---~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 182 AKVTDRRITSLA------FHPTENRKLVAVGDKGGQVGLWNFGT-QE-------KD---KDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred eEecccceEEEE------ecccCcceEEEEccCCCcEEEEecCC-CC-------Cc---cCceEEeccCCccccceEecC
Confidence 456778999998 6664 788899999999965531 11 11 133567889999999999999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCc---------------------------------------------eEE
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------------------------LIT 615 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~---------------------------------------------~l~ 615 (1471)
. +...+++.|.||+|++=|++.+. ...
T Consensus 245 ~--------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 245 A--------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred C--------ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence 7 36788999999999999886321 011
Q ss_pred EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000473 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1471)
Q Consensus 616 ~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~----l~~~~gh~~~V~~v~~spdg~~L~sgs~D~ 691 (1471)
.+.-|...|..++++|.. ..+++|+|.|++.+|||++.... +.....|...|.++.|||.+..|+|.|.|
T Consensus 317 ~~~lh~kKI~sv~~NP~~-----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D- 390 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVC-----PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD- 390 (498)
T ss_pred hhhhhhcccceeecCCCC-----chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC-
Confidence 123466789999999984 56999999999999999986432 23334699999999999999999999999
Q ss_pred CCCCCCCCEEEEEECC
Q 000473 692 SRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 692 sg~~D~~gtV~VWDi~ 707 (1471)
..|+|||..
T Consensus 391 -------~~IRv~dss 399 (498)
T KOG4328|consen 391 -------NEIRVFDSS 399 (498)
T ss_pred -------CceEEeecc
Confidence 999999973
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=133.78 Aligned_cols=212 Identities=19% Similarity=0.211 Sum_probs=151.7
Q ss_pred ccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEeccc-----ccC--C---
Q 000473 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLF-----ERH--N--- 549 (1471)
Q Consensus 483 ~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l-----~~~--d--- 549 (1471)
..|.|-+|+.....+...-...+..|.+.|+++. |+|. .+.+.+.||+|+..++... ... +
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~------F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~ 281 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK------FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIW 281 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceE------ecCCChhheeeeccCceeeeeeecchhhHHHhhcCcccee
Confidence 3466777887433332334455778999999988 5553 8999999999998765311 000 0
Q ss_pred -----------------CCC--CccccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC
Q 000473 550 -----------------SPG--ASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1471)
Q Consensus 550 -----------------~~~--~~~d~~s~~~-~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~ 609 (1471)
.-+ ..||..++.. ...+.-|...|+.++++|.+ ..+|+|+|.|+++++||++
T Consensus 282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~--------p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC--------PWFLATASLDQTAKIWDLR 353 (498)
T ss_pred eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC--------chheeecccCcceeeeehh
Confidence 011 2344443322 34456688899999999973 7899999999999999997
Q ss_pred CCc----eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC----CCcEEEEecCCCC------CcEEE
Q 000473 610 SGN----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----TLRVERMFPGHPN------YPAKV 675 (1471)
Q Consensus 610 tg~----~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~----t~~~l~~~~gh~~------~V~~v 675 (1471)
.-. ++-....|..+|.+..|+|. +..|+|.+.|..|+|||.. .-.+..++. |.. .+...
T Consensus 354 ~l~~K~sp~lst~~HrrsV~sAyFSPs------~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA 426 (498)
T KOG4328|consen 354 QLRGKASPFLSTLPHRRSVNSAYFSPS------GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKA 426 (498)
T ss_pred hhcCCCCcceecccccceeeeeEEcCC------CCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhh
Confidence 422 23334479999999999999 5669999999999999983 333334432 322 24567
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCce
Q 000473 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1471)
Q Consensus 676 ~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~ 723 (1471)
+|.|+..++++|-.- ..|-|+|-..|+.+..+.+.....+
T Consensus 427 ~W~P~~~li~vg~~~--------r~IDv~~~~~~q~v~el~~P~~~tI 466 (498)
T KOG4328|consen 427 AWDPDYNLIVVGRYP--------RPIDVFDGNGGQMVCELHDPESSTI 466 (498)
T ss_pred eeCCCccEEEEeccC--------cceeEEcCCCCEEeeeccCcccccc
Confidence 899999999999887 7899999999998888887765333
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-09 Score=128.83 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=140.6
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccccccCC
Q 000473 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1471)
Q Consensus 22 va~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d 101 (1471)
-.||+|+++|+.. .+.+|.++...+ ...+..|++|.++++.+.+ .| -.++
T Consensus 22 avfSnD~k~l~~~-~~~~V~VyS~~T-----g~~i~~l~~~~a~l~s~~~-~~-----------------------~~~~ 71 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC-TGNFVKVYSTAT-----GECITSLEDHTAPLTSVIV-LP-----------------------SSEN 71 (792)
T ss_pred cccccCCcEEEEe-eCCEEEEEecch-----HhhhhhcccccCccceeee-cC-----------------------CCcc
Confidence 4699999998755 467899999986 3455689999999999983 00 1223
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcE---------EE-----------EcC-----------------
Q 000473 102 NGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSV---------IC-----------TLP----------------- 144 (1471)
Q Consensus 102 ~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~---------i~-----------~~s----------------- 144 (1471)
..++.+++.||+|++||..+|.+++.........+-.. .. .++
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 47888999999999999999998877543211100000 00 000
Q ss_pred ------------------CCCeE--EE--Ecceec--ccCC-------cccccccccccccccccccCCCCCCCCCceEE
Q 000473 145 ------------------SNPRY--VC--IGCCFI--DTNQ-------LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLV 193 (1471)
Q Consensus 145 ------------------~~~~l--l~--~G~~~i--d~~~-------~~~~h~~~~i~~~~~~~d~~~~~~~~~~~~I~ 193 (1471)
+.+.+ ++ ++.+.+ ..++ ..+.|+|. +.-...++.+.+......+|+|.
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~-~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN-ITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc-ceeEEeccccceEEEeccCCcEE
Confidence 01111 00 000111 1100 11124443 33334455666666777788999
Q ss_pred EEeCcc---eEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCCcccccCCCcccCCCcccc
Q 000473 194 IVDTYG---LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDM 270 (1471)
Q Consensus 194 v~D~~t---~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~~~~~~~~~l~~~e~~i~~ 270 (1471)
+|-... ...-.++. +|+.+.|.++.|++++ .+++.|+..|.+.+|.+++++ +++
T Consensus 231 vw~d~~~~~~~~t~t~l--HWH~~~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~T~~--------------kqf-- 287 (792)
T KOG1963|consen 231 VWRDFGSSDDSETCTLL--HWHHDEVNSLSFSSDG-----AYLLSGGREGVLVLWQLETGK--------------KQF-- 287 (792)
T ss_pred EEeccccccccccceEE--EecccccceeEEecCC-----ceEeecccceEEEEEeecCCC--------------ccc--
Confidence 997655 22233444 5777889999999654 679999999999999999873 111
Q ss_pred eeccCCcccCceEEEEecCCcEEEEEeCCeEE
Q 000473 271 AILQNGVVEGGHLVSVATCGNIIALVLKDHCI 302 (1471)
Q Consensus 271 v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~ 302 (1471)
+.-..+.+..+.+|||+...+++..|.-+
T Consensus 288 ---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 288 ---LPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ---ccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 22133445778889999888888877644
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=139.32 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=115.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.|+.+-+||.|.+++-.. .....+ .........|.+.|..+.|-|. +..|++++.|.++++|
T Consensus 66 iLavadE~G~i~l~dt~~--------~~fr~e-e~~lk~~~aH~nAifDl~wapg---------e~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKS--------IVFRLE-ERQLKKPLAHKNAIFDLKWAPG---------ESLLVSASGDSTIRPW 127 (720)
T ss_pred eEEEecCCCceeeecchh--------hhcchh-hhhhcccccccceeEeeccCCC---------ceeEEEccCCceeeee
Confidence 789999999999943210 001111 1123445689999999999985 7899999999999999
Q ss_pred ECCCCceEEE--EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEE--------------
Q 000473 607 DLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-------VER-------------- 663 (1471)
Q Consensus 607 Dl~tg~~l~~--~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~-------~l~-------------- 663 (1471)
|+++.++... +.+|.+.|.+++|.|.+ ...||+|+.||.|.|||++... +.+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeccceeecceeecccccccchhhhccCC-----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 9999998866 99999999999999985 6799999999999999997432 000
Q ss_pred ------EecCCCCCcEE---EEEcCCCCEEEEEEc-CCCCCCCCCCEEEEEECCCCe
Q 000473 664 ------MFPGHPNYPAK---VVWDCPRGYIACLCR-DHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 664 ------~~~gh~~~V~~---v~~spdg~~L~sgs~-D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
.-..|...|.. +.+.-|+..|++++. | +.|+|||++...
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D--------~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD--------STIKVWDLRKNY 251 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCC--------cceEEEeecccc
Confidence 01122333444 556678889998887 5 999999998754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=140.61 Aligned_cols=148 Identities=18% Similarity=0.288 Sum_probs=123.1
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC
Q 000473 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS 610 (1471)
Q Consensus 531 Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t 610 (1471)
.+..|.|-|+..+ +++++.|-. .-..+ ....|+.++|.|- +.+.|+.++.||.|++|.+..
T Consensus 599 ~g~gG~iai~el~------~PGrLPDgv---~p~l~--Ngt~vtDl~WdPF--------D~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 599 AGSGGVIAIYELN------EPGRLPDGV---MPGLF--NGTLVTDLHWDPF--------DDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred cCCCceEEEEEcC------CCCCCCccc---ccccc--cCceeeecccCCC--------ChHHeeecccCceEEEEEecc
Confidence 4557888885544 355554431 11112 2346999999995 478999999999999999976
Q ss_pred Cc-------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCE
Q 000473 611 GN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY 683 (1471)
Q Consensus 611 g~-------~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~ 683 (1471)
+. +-..+..|...|+++.|+|-. .+.|++++.|.+|+|||+++++....+.||.+.|..++|+|+|+.
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc
Confidence 43 456788999999999999974 679999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 684 IACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 684 L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
+++-|.| |+|+||+.++++
T Consensus 735 ~AtVcKD--------g~~rVy~Prs~e 753 (1012)
T KOG1445|consen 735 IATVCKD--------GTLRVYEPRSRE 753 (1012)
T ss_pred eeeeecC--------ceEEEeCCCCCC
Confidence 9999999 999999998875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=133.24 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=129.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++|+.|..|++|... .+.+..+ ..+-..+..|..|+..|+++.|+|+ +++|+||+.+|.|.+|
T Consensus 28 ~laT~G~D~~iriW~v~--r~~~~~~----~~~V~y~s~Ls~H~~aVN~vRf~p~---------gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVN--RSEPGGG----DMKVEYLSSLSRHTRAVNVVRFSPD---------GELLASGGDGGEVFLW 92 (434)
T ss_pred ceecccCccceeeeeee--ecCCCCC----ceeEEEeecccCCcceeEEEEEcCC---------cCeeeecCCCceEEEE
Confidence 69999999999995543 2110000 0122456678899999999999998 8999999999999999
Q ss_pred ECC--------C--------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 607 DLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 607 Dl~--------t--------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
-.. + +....++.+|...|..++|+|+ ++.+++++.|.++++||+..|..+..+.+|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEEEEeccceeEeecccccc
Confidence 876 3 2234677889999999999999 89999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
.|.-++|.|..+|+++-+.| ...++.++...+.
T Consensus 167 yvqgvawDpl~qyv~s~s~d--------r~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSD--------RHPEGFSAKLKQV 199 (434)
T ss_pred ccceeecchhhhhhhhhccC--------cccceeeeeeeee
Confidence 99999999999999999988 6677777655443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=121.84 Aligned_cols=217 Identities=15% Similarity=0.190 Sum_probs=155.0
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
++.++.+.-|++||....+. ++....-.|-..+++.- ...|+|+ .|++|+ ...|+| +++ .++++-.
T Consensus 126 ~a~ssr~~PIh~wdaftG~l--raSy~~ydh~de~taAh---sL~Fs~DGeqlfaGy-krcirv--Fdt----~RpGr~c 193 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKL--RASYRAYDHQDEYTAAH---SLQFSPDGEQLFAGY-KRCIRV--FDT----SRPGRDC 193 (406)
T ss_pred eeeccccCceeeeecccccc--ccchhhhhhHHhhhhhe---eEEecCCCCeEeecc-cceEEE--eec----cCCCCCC
Confidence 56677778899999887654 22223334555555421 1237777 666665 578999 442 1233322
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
+..+-.. +--.|..+.+.|++|+|+ +...++.|+.-.++-++.-..+.++..+.+|.+.|+.+.|.++
T Consensus 194 ~vy~t~~-~~k~gq~giisc~a~sP~--------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed--- 261 (406)
T KOG2919|consen 194 PVYTTVT-KGKFGQKGIISCFAFSPM--------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED--- 261 (406)
T ss_pred cchhhhh-cccccccceeeeeeccCC--------CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC---
Confidence 2211000 001245778999999998 3678999999999999988889999999999999999999999
Q ss_pred CCCCCEEEEEeC-CCcEEEEECCC-CcEEEEecCCCC-CcEEEEE--cCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-C
Q 000473 636 HPWSDCFLSVGE-DFSVALASLET-LRVERMFPGHPN-YPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-G 709 (1471)
Q Consensus 636 ~~~~~~l~S~s~-DgsV~lWdl~t-~~~l~~~~gh~~-~V~~v~~--spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g 709 (1471)
|+.|.+|+. |-.|..||++. +.++..+.+|.. .-..|-| .|++++|++|+.| |.|++||+++ |
T Consensus 262 ---Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td--------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 262 ---GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD--------GSVRVWDLKDLG 330 (406)
T ss_pred ---cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC--------ccEEEEecCCCC
Confidence 899999875 78899999985 456777888876 4456666 6889999999998 9999999998 7
Q ss_pred eEEEEEeCCCCCceeeeeee
Q 000473 710 ARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 710 ~~~~~l~gH~~~v~~~~~~~ 729 (1471)
....++..|...+..+.+.|
T Consensus 331 n~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred CcccccccccccccceecCc
Confidence 76777766766555554443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-09 Score=124.39 Aligned_cols=198 Identities=24% Similarity=0.311 Sum_probs=155.0
Q ss_pred cCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcce
Q 000473 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1471)
Q Consensus 484 ~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~-DG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1471)
++.+++|+... .......+..|...|.++.+.+... .++.+.. |+.+++ |+ ...+..
T Consensus 133 d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~--~~-------------~~~~~~ 190 (466)
T COG2319 133 DGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKL--WD-------------LRTGKP 190 (466)
T ss_pred CccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCC----EEEecCCCCCceEE--EE-------------cCCCce
Confidence 55778888765 1233455678888999877555443 5777765 999998 33 333567
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCC-EEEEEECCCcEEEEECCCCceEE-EEeccCCCEEEEEECCCCCCCCCCC
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~-~L~SGs~DgtI~lWDl~tg~~l~-~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
...+.+|...|.+++|+|+ +. .+++++.|++|++||...+..+. .+.+|...+ ...|+|+ +.
T Consensus 191 ~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~ 254 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPD---------GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GS 254 (466)
T ss_pred EEeeccCCCceEEEEEcCC---------cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CC
Confidence 7888899999999999986 55 66666999999999999888888 788998875 4489998 77
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe--C
Q 000473 641 CFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--G 717 (1471)
Q Consensus 641 ~l~S~s~DgsV~lWdl~t~~~-l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~--g 717 (1471)
.+++++.|+.+++|+++.... +..+.+|...+.++.|.|++..+++++.| +.+.+||..++....... +
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--------GTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--------CcEEEEEcCCCceEEEeeecc
Confidence 888999999999999987665 55557888999999999999999987777 789999999988777776 7
Q ss_pred CCCCceeeee
Q 000473 718 TASHSMFDHF 727 (1471)
Q Consensus 718 H~~~v~~~~~ 727 (1471)
|...+....+
T Consensus 327 ~~~~~~~~~~ 336 (466)
T COG2319 327 HEGPVSSLSF 336 (466)
T ss_pred cCCceEEEEE
Confidence 7764444433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=130.46 Aligned_cols=138 Identities=19% Similarity=0.292 Sum_probs=119.5
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc---------eEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~---------~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
..+|..+.|+++ ....++||+.|..|++|-+..++ .+..+..|...|+.+.|+|+ |+
T Consensus 13 ~~pv~s~dfq~n--------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~------ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKN--------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD------GE 78 (434)
T ss_pred CCceEEEEeccC--------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC------cC
Confidence 357899999886 24599999999999999987432 34677889999999999999 99
Q ss_pred EEEEEeCCCcEEEEECC--------C--------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000473 641 CFLSVGEDFSVALASLE--------T--------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1471)
Q Consensus 641 ~l~S~s~DgsV~lWdl~--------t--------~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW 704 (1471)
.++||++++.|.+|-.. + ....+.+.+|...|..++|+|++.++++++.| .++++|
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d--------ns~~l~ 150 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD--------NSVRLW 150 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc--------ceEEEE
Confidence 99999999999999765 2 23456778999999999999999999999999 999999
Q ss_pred ECCCCeEEEEEeCCCCCceeeeeee
Q 000473 705 DVKTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 705 Di~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
|+..|+++..+.+|..-+-++.+.+
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred EeccceeEeeccccccccceeecch
Confidence 9999999999999998887775553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=119.73 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=138.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe--cCCcc---EEEEEEecCCCCcccCcCCCEEEEEECCC
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGA---VLCLAAHRMVGTAKGWSFNEVLVSGSMDC 601 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~--gH~~~---V~~la~spd~~~~~~~~~~~~L~SGs~Dg 601 (1471)
.+++.+.+.-|.+ ||.-+|+....+. .|.+. ..||+|+|| |..|+.| ...
T Consensus 125 l~a~ssr~~PIh~---------------wdaftG~lraSy~~ydh~de~taAhsL~Fs~D---------GeqlfaG-ykr 179 (406)
T KOG2919|consen 125 LFAVSSRDQPIHL---------------WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD---------GEQLFAG-YKR 179 (406)
T ss_pred eeeeccccCceee---------------eeccccccccchhhhhhHHhhhhheeEEecCC---------CCeEeec-ccc
Confidence 5666667777777 3444555555443 35443 468999998 8888877 567
Q ss_pred cEEEEEC-CCCceEEE-------EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000473 602 SIRIWDL-GSGNLITV-------MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 602 tI~lWDl-~tg~~l~~-------~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
+|+++|+ +.|.-... -.+..+-|.+++|+|.. ..+++.++.-..+-|+.-..++++..+.||.+.|+
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-----~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-----SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-----CcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 8999999 55542211 12346789999999984 66999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCC-CceeeeeeeccccccccceEEcCCccccccc
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTAS-HSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~~-~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1471)
.+.|.++|+.|++|..- +..|..||++. +..+-.|.+|.. ..-.+.|.- ...+..+.+|++
T Consensus 255 hL~~~edGn~lfsGaRk-------~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl----d~~~~~LasG~t------ 317 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARK-------DDKILCWDIRYSRDPVYALERHVGDTNQRILFDL----DPKGEILASGDT------ 317 (406)
T ss_pred eEEeccCcCeecccccC-------CCeEEEEeehhccchhhhhhhhccCccceEEEec----CCCCceeeccCC------
Confidence 99999999999999875 36999999985 566777777775 222333331 112222233333
Q ss_pred eeeccCCceEeecccccc
Q 000473 752 LPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 752 ~~~~~D~tir~w~l~~~~ 769 (1471)
||.|++|+++.+-
T Consensus 318 -----dG~V~vwdlk~~g 330 (406)
T KOG2919|consen 318 -----DGSVRVWDLKDLG 330 (406)
T ss_pred -----CccEEEEecCCCC
Confidence 8999999987644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-09 Score=122.56 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=147.6
Q ss_pred ccCccccccccCCCCCCCccccccccC-ccEEEEEeeccccccCCEEEE-EEcCCcEEEEEecccccCCCCCCccccCC-
Q 000473 483 CQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNS- 559 (1471)
Q Consensus 483 ~~~~v~~Wd~~~~~~~g~~~~~~~~h~-~~Vts~~~is~~~f~P~~lv~-Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s- 559 (1471)
.++.+.+|+..... .....+..+. ..+....+. ..... ..++. +..|+.+.+|+. ..
T Consensus 85 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~~~---------------~~~ 144 (466)
T COG2319 85 SDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALS-SPDGN-SILLASSSLDGTVKLWDL---------------STP 144 (466)
T ss_pred CCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEE-CCCcc-eEEeccCCCCccEEEEEe---------------cCC
Confidence 45667777766643 1122223322 244444331 11111 12333 344888888433 22
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC-CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000473 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 560 ~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~-DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
......+.+|...|.+++|+|+ +..+++++. |+.+++|++..+..+..+.+|...|.+++|+|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 209 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD---------GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD------ 209 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC---------CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC------
Confidence 4667788999999999999997 668888885 999999999998999999999999999999988
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEEE
Q 000473 639 SD-CFLSVGEDFSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVL 715 (1471)
Q Consensus 639 ~~-~l~S~s~DgsV~lWdl~t~~~l~-~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~-~~~l 715 (1471)
+. .+++++.|+.|++||...+..+. .+.+|...+ ...|+|++.++++++.| +.+++||++.... ...+
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD--------GTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC--------CcEEEeeecCCCcEEEEE
Confidence 66 66666999999999999888888 788998875 44899999899988888 9999999987664 5555
Q ss_pred eCCCCCceeeeee
Q 000473 716 RGTASHSMFDHFC 728 (1471)
Q Consensus 716 ~gH~~~v~~~~~~ 728 (1471)
.+|...+....+.
T Consensus 281 ~~~~~~v~~~~~~ 293 (466)
T COG2319 281 SGHSSSVLSVAFS 293 (466)
T ss_pred ecCCccEEEEEEC
Confidence 7786666665455
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=118.30 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=132.9
Q ss_pred ecccccCccccccccCCCCCCCcc--ccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGR--DDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~--~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~ 553 (1471)
.++..+..+.+|+........... ..-.++....++- .++|. .-+....|+++.. ||
T Consensus 138 lasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg------~WspHHdgnqv~tt~d~tl~~--~D---------- 199 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG------AWSPHHDGNQVATTSDSTLQF--WD---------- 199 (370)
T ss_pred eEEeccCceEEEEcccCcchheeecccccccccceeccc------ccCCCCccceEEEeCCCcEEE--EE----------
Confidence 445557888999987765421111 0112233344443 36663 3444456788887 33
Q ss_pred ccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC-CceEEEEeccCCCEEEEEECC
Q 000473 554 SLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 631 (1471)
Q Consensus 554 ~~d~~s~~~~~~l-~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t-g~~l~~~~~H~~~V~~l~fsp 631 (1471)
..+......+ ..|...|..+.|.|+. ..+|+||+.||.|++||.+. ..++..+.+|..-|+++.|+|
T Consensus 200 ---~RT~~~~~sI~dAHgq~vrdlDfNpnk--------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 200 ---LRTMKKNNSIEDAHGQRVRDLDFNPNK--------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred ---ccchhhhcchhhhhcceeeeccCCCCc--------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 3333333333 5688899999999972 67999999999999999974 557899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCC-----------------------------cEEEEecCCCCCcEEEEEcCCCC
Q 000473 632 PQTEHPWSDCFLSVGEDFSVALASLETL-----------------------------RVERMFPGHPNYPAKVVWDCPRG 682 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~DgsV~lWdl~t~-----------------------------~~l~~~~gh~~~V~~v~~spdg~ 682 (1471)
.. .++++|||.|..|.||....- ..+.++..|...|++++|+..+.
T Consensus 269 ~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 269 EH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred cc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 86 789999999999999965320 13446778999999999999888
Q ss_pred EEE-EEEcCCCCCCCCCCEEEEEECCC
Q 000473 683 YIA-CLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 683 ~L~-sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+++ +-+.| |.+.|=.+..
T Consensus 344 WiFASLSYD--------GRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYD--------GRVIISSVPR 362 (370)
T ss_pred eeEEEeccC--------ceEEeecCCh
Confidence 765 44555 8888866543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-11 Score=146.29 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=144.0
Q ss_pred cccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000473 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1471)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd 581 (1471)
+..+.+|...|.|..+-.... ++++|+.|..++||. .++..+...+.||.+.++.++.+..
T Consensus 183 ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS---------------~et~~~lAs~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWS---------------METARCLASCRGHSGDITDLAVSSN 243 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc----eEeecCccceeeeee---------------ccchhhhccCCCCccccchhccchh
Confidence 445679999999988666665 799999999999933 4566788889999999999999875
Q ss_pred CCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC--
Q 000473 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-- 659 (1471)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-- 659 (1471)
+.+++++|.|+.|++|-+.++.++..+.+|+|.|++++|+|- . +.+.||++++||.+-.
T Consensus 244 ---------n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~------~----sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 244 ---------NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR------A----SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred ---------hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc------c----cCCCCCceEecccccccc
Confidence 688999999999999999999999999999999999999997 2 7788999999998710
Q ss_pred ------------cEEEEec----------C------CCCCcEEEEEcCCCCEEEEEEcCCC---CCCCCCCEEEEEECCC
Q 000473 660 ------------RVERMFP----------G------HPNYPAKVVWDCPRGYIACLCRDHS---RTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 660 ------------~~l~~~~----------g------h~~~V~~v~~spdg~~L~sgs~D~s---g~~D~~gtV~VWDi~t 708 (1471)
..+..+. + ......+++|...+-.+++++.|.+ -+...+-.+.+|++.+
T Consensus 305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 1111100 0 0012334555555555555554411 1112226789999999
Q ss_pred CeEEEEEeCCCCCceeeeeee
Q 000473 709 GARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 709 g~~~~~l~gH~~~v~~~~~~~ 729 (1471)
|.+++.+.||...+....++|
T Consensus 385 g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 385 GQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred chhhhhhcccccceeeeeecC
Confidence 999999999999888887775
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-08 Score=127.28 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=111.9
Q ss_pred CCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccc
Q 000473 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1471)
Q Consensus 13 ~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~ 92 (1471)
.-++..++|+++||.++++|+|..||+|.+|.=... ..+-.....|.=|..+|++|+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~~~V~~L~---------------------- 258 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDDSETCTLLHWHHDEVNSLS---------------------- 258 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccc-ccccccceEEEecccccceeE----------------------
Confidence 344445799999999999999999999999975410 011223345667999999999
Q ss_pred cccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccccc
Q 000473 93 NVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE 172 (1471)
Q Consensus 93 ~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~ 172 (1471)
|+++|.+|.||+..|.+.+|.+.+++ ... | |+-|+|..-...++|+.+.+.-+.
T Consensus 259 -----fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf--L-PRLgs~I~~i~vS~ds~~~sl~~~----------------- 312 (792)
T KOG1963|consen 259 -----FSSDGAYLLSGGREGVLVLWQLETGK-KQF--L-PRLGSPILHIVVSPDSDLYSLVLE----------------- 312 (792)
T ss_pred -----EecCCceEeecccceEEEEEeecCCC-ccc--c-cccCCeeEEEEEcCCCCeEEEEec-----------------
Confidence 78999999999999999999999998 221 3 344777665566677766554432
Q ss_pred ccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccc--------cCCeEEEEEeeecCCCCceeEEEEeCCCcEEE
Q 000473 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS--------IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 244 (1471)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s--------~~~i~~~~~~~~~~d~~~~~llvas~dG~V~v 244 (1471)
+..|.+....++++..++.+-... -+-.+.+.+.| +-+.++.-+..|.|++
T Consensus 313 ----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-----r~~~~vln~~~g~vQ~ 371 (792)
T KOG1963|consen 313 ----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-----RTNSLVLNGHPGHVQF 371 (792)
T ss_pred ----------------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-----CCCceeecCCCceEEE
Confidence 145555555555554444320000 01123444442 1133555578899999
Q ss_pred EECCCC
Q 000473 245 VPISKE 250 (1471)
Q Consensus 245 W~l~~~ 250 (1471)
+|+-+.
T Consensus 372 ydl~td 377 (792)
T KOG1963|consen 372 YDLYTD 377 (792)
T ss_pred Eecccc
Confidence 999876
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=122.82 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=135.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++++..+|+|++++|. +++.+..+++|...++.+.|..+. ..+.+.||+.||+|++|
T Consensus 42 ~vav~lSngsv~lyd~~---------------tg~~l~~fk~~~~~~N~vrf~~~d-------s~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG---------------TGQLLEEFKGPPATTNGVRFISCD-------SPHGVISCSSDGTVRLW 99 (376)
T ss_pred eEEEEecCCeEEEEecc---------------chhhhheecCCCCcccceEEecCC-------CCCeeEEeccCCeEEEE
Confidence 58899999999996554 467788899999999999997541 27889999999999999
Q ss_pred ECCCCceE--EEEeccC-CCEEEEEECCCCCCCCCCCEEEEEe----CCCcEEEEECCCCcE-EEE-ecCCCCCcEEEEE
Q 000473 607 DLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVW 677 (1471)
Q Consensus 607 Dl~tg~~l--~~~~~H~-~~V~~l~fspd~~~~~~~~~l~S~s----~DgsV~lWdl~t~~~-l~~-~~gh~~~V~~v~~ 677 (1471)
|+++.... ..+.+|. .+..+++..-. ++.+++|. .|-.|.+||++..+. ++. ...|...|++++|
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 99976654 3444555 45666666544 67888874 478899999998776 443 4689999999999
Q ss_pred cCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCCeE----EEEEeCCCCCceeeeeeeccccccccceEEcCCccccccce
Q 000473 678 DCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGAR----ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1471)
Q Consensus 678 spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~----~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~ 752 (1471)
+|.. +.|++|+.| |-|.|+|++.-.. +.++. |.+.+-++.| ...+--.++
T Consensus 174 HP~~pnlLlSGSvD--------GLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw----------------~~~~ykrI~ 228 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVD--------GLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGW----------------LSKKYKRIM 228 (376)
T ss_pred cCCCCCeEEeeccc--------ceEEeeecCCCcchhhHHHhhc-ccceeeeeee----------------ecCCcceEE
Confidence 9976 477888888 9999999875422 12221 1111111111 111212466
Q ss_pred eeccCCceEeecccccc
Q 000473 753 PIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 753 ~~~~D~tir~w~l~~~~ 769 (1471)
.+..+.++..|+++.-.
T Consensus 229 clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 229 CLTHMETFAIYELEDGS 245 (376)
T ss_pred EEEccCceeEEEccCCC
Confidence 77778899999886533
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=118.11 Aligned_cols=212 Identities=19% Similarity=0.190 Sum_probs=153.9
Q ss_pred ccCccEEEEEeecccc-ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-----ecCCccEEEEEEec
Q 000473 507 HKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLCLAAHR 580 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~-f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-----~gH~~~V~~la~sp 580 (1471)
.|.-.++.++++++.. --|+.|++. +..+++|+...-. ... .+...| ..|..+++++.|..
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee---~~~--------~~~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEE---SRV--------ELQSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcC---Cce--------ehhhhhccCcccccCCccccccccc
Confidence 4777888888877763 445566653 4578885543100 000 111111 24567899999976
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCc---eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~---~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~ 657 (1471)
- +.+++.+.|-|-|..+||+++|. ....+-.|..+|..++|.... .+.|+|+|.||+||++|++
T Consensus 161 ~--------dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 161 V--------DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDLR 227 (364)
T ss_pred C--------CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEec
Confidence 4 37899999999999999999874 356778999999999999863 5699999999999999998
Q ss_pred CCcE---EEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeeccc
Q 000473 658 TLRV---ERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGIS 732 (1471)
Q Consensus 658 t~~~---l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~~~l~gH~~~v~~~~~~~~~~ 732 (1471)
..+- +..=+....+...++|++.+ +|+++-..| ...|.|-|++. ...+..|++|++.|..+.+.|.-
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d-------S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS- 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-------SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS- 299 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC-------CceEEEEEecCCCcceehhhcCcccccceEecCCC-
Confidence 7653 22223334578899998865 477776666 26899999987 56789999999999998888532
Q ss_pred cccccceEEcCCccccccceeeccCCceEeecccc
Q 000473 733 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 733 ~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~ 767 (1471)
++.+.++..|.....|+++.
T Consensus 300 ---------------~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 300 ---------------SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---------------CceeeecCCcceEEEEeccc
Confidence 23445666688899999854
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-08 Score=114.22 Aligned_cols=278 Identities=15% Similarity=0.092 Sum_probs=166.9
Q ss_pred CCCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccc
Q 000473 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1471)
Q Consensus 12 ~~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1471)
+.+-.|+|.-++|-|||..|+.++ +..+.++|.++ ....+.|.||+..|.|++
T Consensus 8 r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~nd-----G~llqtLKgHKDtVycVA--------------------- 60 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSD-----GTLLQPLKGHKDTVYCVA--------------------- 60 (1081)
T ss_pred hcccccchheeEECCCCceEEEec-CCEEEEEeCCC-----cccccccccccceEEEEE---------------------
Confidence 346678999999999998887664 45788999985 457788999999999999
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEEcC-CCeEEEeeeCCCCCCCCcEEEEcCCCC-eEEEEcc-----eecccCCccc
Q 000473 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNP-RYVCIGC-----CFIDTNQLSD 164 (1471)
Q Consensus 92 ~~~~~~~s~d~~~LaSas~DG~I~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~-~ll~~G~-----~~id~~~~~~ 164 (1471)
.+.||++++||+.|..+.||+-. .|.+. +.|+....+..|.|-. .+++|.- ...+.+....
T Consensus 61 ------ys~dGkrFASG~aDK~VI~W~~klEG~Lk------YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K 128 (1081)
T KOG1538|consen 61 ------YAKDGKRFASGSADKSVIIWTSKLEGILK------YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK 128 (1081)
T ss_pred ------EccCCceeccCCCceeEEEecccccceee------eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh
Confidence 56778889999999999999865 33222 2223333444444333 2222221 1112222222
Q ss_pred ccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEee-cCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEE
Q 000473 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVF-HGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1471)
Q Consensus 165 ~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~-s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~ 243 (1471)
..+--++-++.-.-|+.+...+-.+++|-+-+....+-+..-. .|.-+ +|..+++.|++..|..+-+.+++.+.++.
T Consensus 129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Ns--piwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNS--PIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCC--CceEEEecCCCCCCccceEEEEeccceeE
Confidence 2222334444444455555556667777776654433333222 23334 48999999876556534455569999999
Q ss_pred EEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ceeeeeeeccee
Q 000473 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFVDNLF 322 (1471)
Q Consensus 244 vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~~l~d~~~-~ige~~~~~~~l 322 (1471)
.+.+++.- . +.++.+ + =+...+++.++|.+++.++.+. ++.++.... .+|....
T Consensus 207 Fy~LsG~~-----I-----gk~r~L------~---FdP~CisYf~NGEy~LiGGsdk-~L~~fTR~GvrLGTvg~----- 261 (1081)
T KOG1538|consen 207 FYQLSGKQ-----I-----GKDRAL------N---FDPCCISYFTNGEYILLGGSDK-QLSLFTRDGVRLGTVGE----- 261 (1081)
T ss_pred EEEeccee-----e-----cccccC------C---CCchhheeccCCcEEEEccCCC-ceEEEeecCeEEeeccc-----
Confidence 99998651 0 111111 1 1125678889999999887776 333343322 2222210
Q ss_pred EeecCCCCceeeeeEeecchhhhhhcccccccccccceEEEEcCCCcEEEEEeec
Q 000473 323 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1471)
Q Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~vy~l~~ 377 (1471)
...|+=.....++ ...+.++..||..--|++.+
T Consensus 262 -------~D~WIWtV~~~PN---------------sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 262 -------QDSWIWTVQAKPN---------------SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -------cceeEEEEEEccC---------------CceEEEEEccCeeehhhhHH
Confidence 1233333333333 22778888899888888764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=125.36 Aligned_cols=191 Identities=15% Similarity=0.107 Sum_probs=131.8
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+..+.....|++||........ ....+-...||++. ...-.-+.++.|+.||.+++++-. .. .
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vTaLS---~~~~~gn~i~AGfaDGsvRvyD~R--~a--------~ 1242 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVTALS---ADLVHGNIIAAGFADGSVRVYDRR--MA--------P 1242 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEe---ecccCCCccceeec---ccccCCceEEEeecCCceEEeecc--cC--------C
Confidence 56666667888999987653321 11122334455532 111223489999999999994433 11 1
Q ss_pred cCCcceEEEEecCCcc--EEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE--EEEeccC--C-CEEEEEE
Q 000473 557 VNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHV--A-PVRQIIL 629 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~--V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l--~~~~~H~--~-~V~~l~f 629 (1471)
.+ ..+...+.|+.. |..+.+.+. | -..|+||+.||.|++||++..... .....|. | ..+++..
T Consensus 1243 ~d--s~v~~~R~h~~~~~Iv~~slq~~-----G---~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1243 PD--SLVCVYREHNDVEPIVHLSLQRQ-----G---LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred cc--ccceeecccCCcccceeEEeecC-----C---CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 11 346677889887 999988774 1 237999999999999999864222 2233333 4 5899999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh-------~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~ 702 (1471)
++. ...+|||+. +.|+||++. |+.+..+..+ .+.+.|++|+|..-.|++|..| .+|.
T Consensus 1313 H~h------apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D--------s~V~ 1376 (1387)
T KOG1517|consen 1313 HEH------APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD--------STVS 1376 (1387)
T ss_pred ccC------CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC--------ceEE
Confidence 888 789999998 999999987 4443333322 2357999999999999999887 8999
Q ss_pred EEECCCC
Q 000473 703 IWDVKTG 709 (1471)
Q Consensus 703 VWDi~tg 709 (1471)
||....+
T Consensus 1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred EeecCCc
Confidence 9987654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-10 Score=119.94 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=116.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++.|+++|.+.+|+..+ + +...+. .++.+.......|.++|.++.|.+- -..=++|+.+..+..|
T Consensus 167 lllaGyEsghvv~wd~S~--~-~~~~~~--~~~~kv~~~~ash~qpvlsldyas~---------~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLST--G-DKIIQL--PQSSKVESPNASHKQPVLSLDYASS---------CDRGISGGADDKLVMY 232 (323)
T ss_pred EEEEeccCCeEEEEEccC--C-ceeecc--ccccccccchhhccCcceeeeechh---------hcCCcCCCccccceee
Confidence 588999999999954331 1 100000 0111333445679999999999764 3445788888899999
Q ss_pred ECCC--CceE--EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000473 607 DLGS--GNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1471)
Q Consensus 607 Dl~t--g~~l--~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~ 682 (1471)
+++. +.+. ...+-....|..+.+.|| ++.++|+|.|+.||+|+.++++++..+.-|.+.|++++|+|+..
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9863 3322 222333456888889998 99999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
.++.++.| ++|.+|++
T Consensus 307 lmAaaskD--------~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKD--------ARISLWKL 322 (323)
T ss_pred hhhhccCC--------ceEEeeec
Confidence 99999999 99999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=119.40 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=149.5
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d 556 (1471)
.+++..+++.+++++... ++....+++++..++-+.++++. .|+.+.+++.||+|++|+...
T Consensus 42 ~vav~lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs------------ 103 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRS------------ 103 (376)
T ss_pred eEEEEecCCeEEEEeccc----hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeec------------
Confidence 366777888999998776 56777889999999999988876 577999999999999944331
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEE----CCCcEEEEECCCCce-EEE-EeccCCCEEEEEE
Q 000473 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSIRIWDLGSGNL-ITV-MHHHVAPVRQIIL 629 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~la~spd~~~~~~~~~~~~L~SGs----~DgtI~lWDl~tg~~-l~~-~~~H~~~V~~l~f 629 (1471)
.....+..+.+|. .+-.|++.... ++.++.|. .|-.|.+||++..+. +.. +..|...|++|.|
T Consensus 104 -~~e~a~~~~~~~~~~~f~~ld~nck---------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 104 -QAESARISWTQQSGTPFICLDLNCK---------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -chhhhheeccCCCCCcceEeeccCc---------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 1113344455665 45667765433 67777774 466899999997765 443 4579999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~---~l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+|.. .+.|+|||.||-|.|+|++... .+....-|...|-++.|..++ +.|.+-+.+ ++.++|+
T Consensus 174 HP~~-----pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~--------Etf~~~e 240 (376)
T KOG1188|consen 174 HPSD-----PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM--------ETFAIYE 240 (376)
T ss_pred cCCC-----CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc--------CceeEEE
Confidence 9985 7799999999999999997532 222223467789999998876 457787887 8999999
Q ss_pred CCCCeEEEEEe
Q 000473 706 VKTGARERVLR 716 (1471)
Q Consensus 706 i~tg~~~~~l~ 716 (1471)
++.|..+..+.
T Consensus 241 le~~~~~~~~~ 251 (376)
T KOG1188|consen 241 LEDGSEETWLE 251 (376)
T ss_pred ccCCChhhccc
Confidence 99988655444
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=125.11 Aligned_cols=138 Identities=15% Similarity=0.206 Sum_probs=115.7
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC--------------C--------------ceEEEEeccC
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--------------G--------------NLITVMHHHV 621 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t--------------g--------------~~l~~~~~H~ 621 (1471)
+..|+|+.|-|. +...++..-.+|.+.++|..- + .++..+.--.
T Consensus 219 ktsvT~ikWvpg--------~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 219 KSSVTCIKWVPG--------SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccceEEEEEEeC--------CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 367999999986 266777788899999997641 1 1222233335
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEE
Q 000473 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1471)
Q Consensus 622 ~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV 701 (1471)
+.|...+|+|| |++||+++.||.+||+|..+.+.+..+..--+...||+|+|||+||++|++| .-|
T Consensus 291 g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPD------GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLV 356 (636)
T ss_pred ccccceeEcCC------CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceE
Confidence 67889999999 9999999999999999999988877777666779999999999999999999 899
Q ss_pred EEEECCCCeEEEEEeCCCCCceeeeeee
Q 000473 702 FIWDVKTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 702 ~VWDi~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
.||.+..++.+..-.||.+-|..+.|.+
T Consensus 357 tVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999988875
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-09 Score=115.11 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=117.9
Q ss_pred cCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 508 KEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
+-+.|.|+. |.|+ .+++-. |..|.+|+.+ .+. ...-.+.. ..-.+|....++-+|+|.|
T Consensus 122 avg~i~cve------w~Pns~klasm~-dn~i~l~~l~--ess---~~vaev~s----s~s~e~~~~ftsg~WspHH--- 182 (370)
T KOG1007|consen 122 AVGKINCVE------WEPNSDKLASMD-DNNIVLWSLD--ESS---KIVAEVLS----SESAEMRHSFTSGAWSPHH--- 182 (370)
T ss_pred HhCceeeEE------EcCCCCeeEEec-cCceEEEEcc--cCc---chheeecc----cccccccceecccccCCCC---
Confidence 445888888 5555 555544 7788884443 110 00001100 0112466677888999864
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEE-eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEE
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVER 663 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~-~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t-~~~l~ 663 (1471)
+++.+++. .|+++..||+++.++...+ ..|...|..+.|+|+. ..+|+|+++|+.|++||.+. ..++.
T Consensus 183 ----dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 183 ----DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ----ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----eEEEEEcCCCccEEEEeccCCCcccc
Confidence 35655554 6899999999988766555 4688999999999994 66899999999999999975 55789
Q ss_pred EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 664 MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 664 ~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.+++|...|++|.|+|... +|++|+.| ..|.+|...+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SD--------s~V~Lsca~s 290 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSD--------SAVNLSCASS 290 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCC--------ceeEEEeccc
Confidence 9999999999999999755 55666666 8999998654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.9e-09 Score=114.25 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=122.6
Q ss_pred cCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCccc
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~ 587 (1471)
+...+|+... +...|+++.+.+-|-+..||+.. .+ .++.....|-.|...|..++|..+
T Consensus 149 ~~aPlTSFDW---ne~dp~~igtSSiDTTCTiWdie--~~----------~~~~vkTQLIAHDKEV~DIaf~~~------ 207 (364)
T KOG0290|consen 149 FCAPLTSFDW---NEVDPNLIGTSSIDTTCTIWDIE--TG----------VSGTVKTQLIAHDKEVYDIAFLKG------ 207 (364)
T ss_pred cCCccccccc---ccCCcceeEeecccCeEEEEEEe--ec----------cccceeeEEEecCcceeEEEeccC------
Confidence 3455666321 22356789999999999993332 00 122345567899999999999875
Q ss_pred CcCCCEEEEEECCCcEEEEECCCCceEEEEec--c-CCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEEEECCC-CcEE
Q 000473 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H-VAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLET-LRVE 662 (1471)
Q Consensus 588 ~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~--H-~~~V~~l~fspd~~~~~~~~~l~S~s~D-gsV~lWdl~t-~~~l 662 (1471)
..+.++|.|.||+||++|++..+.-..+.. . ..+...++|++.. -+++++...| ..|.+.|++. ..++
T Consensus 208 --s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 208 --SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred --ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecCCCcce
Confidence 268999999999999999987664333322 1 3567888888763 6688888766 5799999986 4578
Q ss_pred EEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 663 RMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
..+.+|.+.|+.++|.|... .|.+++.| ..+.+||+.+.
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD--------~qaliWDl~q~ 320 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDD--------CQALIWDLQQM 320 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCc--------ceEEEEecccc
Confidence 89999999999999999865 56666665 89999999753
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=123.34 Aligned_cols=258 Identities=14% Similarity=0.120 Sum_probs=169.6
Q ss_pred eeeEEEeecceeeEEeeeeeccccccccccCeeEEEEccccCCCCCcceeEeccC--C--ceEeeccccccccCCCCccc
Q 000473 400 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEG--F--SFVDWVNNSTFLDENEGSCT 475 (1471)
Q Consensus 400 ~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g--~--~~~~w~~~~~~~~~~dG~~i 475 (1471)
...+.|++.++.++.... ++ ..+.+|++....+............ + ....|..+. .+.
T Consensus 245 v~~~~f~p~~p~ll~gG~--y~--------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~------~~~-- 306 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGC--YN--------GQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE------HNT-- 306 (555)
T ss_pred eeEEEeccCCcceEEeec--cC--------ceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC------CCC--
Confidence 456778888877765432 22 2378898655443111100011111 1 125675532 111
Q ss_pred ceeecccccCccccccccCCCCCC--Ccccccc------ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEeccccc
Q 000473 476 GKSDLTFCQDTVPRSEHVDSRQAG--DGRDDFV------HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER 547 (1471)
Q Consensus 476 ~~l~~s~~~~~v~~Wd~~~~~~~g--~~~~~~~------~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~ 547 (1471)
.+...+.++.+..|++..-..+. .+..... .....++++.+.+ ..|+.++.|+++|.|....+.-+..
T Consensus 307 -~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 307 -EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred -ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCcEEEEEeccCCcc
Confidence 35666779999999876543322 1111111 1223466666444 3456899999999999844331111
Q ss_pred CCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC-CCceEEEEeccCCCEEE
Q 000473 548 HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQ 626 (1471)
Q Consensus 548 ~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~-tg~~l~~~~~H~~~V~~ 626 (1471)
+ ....-+.+..+..|.+.|+++.++|- ....++|++ |-+|++|... ...++..+..+...|++
T Consensus 383 ~-------~~~~~~~~~~~~~h~g~v~~v~~nPF--------~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 383 A-------PEVSYKGHSTFITHIGPVYAVSRNPF--------YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred c-------ccccccccccccccCcceEeeecCCC--------ccceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 0 00111335567789999999999996 255666666 9999999988 66788888889999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000473 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1471)
Q Consensus 627 l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t--~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW 704 (1471)
++|+|-+ ..+|+++..||.+-+||+.. .+++....-+....+.+.|++.|+.|++|... |++++|
T Consensus 447 vaWSptr-----pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~ 513 (555)
T KOG1587|consen 447 VAWSPTR-----PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHIL 513 (555)
T ss_pred eEEcCcC-----ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEE
Confidence 9999985 45999999999999999964 44555555556667889999999999999988 999999
Q ss_pred ECCC
Q 000473 705 DVKT 708 (1471)
Q Consensus 705 Di~t 708 (1471)
++..
T Consensus 514 ~l~~ 517 (555)
T KOG1587|consen 514 KLSE 517 (555)
T ss_pred EcCc
Confidence 9853
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=120.00 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=120.8
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCE
Q 000473 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 562 ~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~ 641 (1471)
+...+.||++.|.|+...|. +.+|++|+.||+|++|.+.||.|+.++.- .+.|.+|+|+|.. ..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~---------G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~-----~~~ 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS---------GEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLS-----DLC 456 (733)
T ss_pred eeeeEeccCCeEEEEEecCC---------cceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCC-----Cce
Confidence 44567999999999999985 99999999999999999999999988754 4589999999984 335
Q ss_pred EEEEeCCCcEEEEECCCC-------------------------------------cEEEEecCCCCCcEEEEEcCCCCEE
Q 000473 642 FLSVGEDFSVALASLETL-------------------------------------RVERMFPGHPNYPAKVVWDCPRGYI 684 (1471)
Q Consensus 642 l~S~s~DgsV~lWdl~t~-------------------------------------~~l~~~~gh~~~V~~v~~spdg~~L 684 (1471)
++.++.+..+.|.+..-| +-++....|...|..|.|+..|+||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 555555555555443211 1123344577889999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 685 ~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
++.+.+ +++..|.|.++..+....-+.--.+.+..+.|.+. .+.+-++.-..+|+++
T Consensus 537 atV~~~-----~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs------------------~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 537 ATVMPD-----SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS------------------KPYLFVATQRSVRIYD 593 (733)
T ss_pred EEeccC-----CCcceEEEEecccccccCchhhcCCceeEEEecCC------------------CceEEEEeccceEEEe
Confidence 998887 33478999998766554445445556677767742 1222333456788888
Q ss_pred cc
Q 000473 765 IQ 766 (1471)
Q Consensus 765 l~ 766 (1471)
|.
T Consensus 594 L~ 595 (733)
T KOG0650|consen 594 LS 595 (733)
T ss_pred hh
Confidence 73
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-10 Score=139.17 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=110.7
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
+.++.|.||.++|+|..|... +.++++|+.|..|+||...++.++....||.+.|+.++.+.+ ..
T Consensus 181 k~ikrLlgH~naVyca~fDrt---------g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------n~ 245 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT---------GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------NT 245 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc---------cceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------hh
Confidence 556678899999999999875 899999999999999999999999999999999999999987 67
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 641 ~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
.+++++.|..|++|-+.++.++..+.||.+.|++++|+|-. +.+.| |++++||.+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d--------gt~~~wd~r 300 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD--------GTCRIWDAR 300 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC--------CceEecccc
Confidence 89999999999999999999999999999999999999965 44555 999999987
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=126.85 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=109.9
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCE
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~-~H~~~V~~l~fspd~~~~~~~~~ 641 (1471)
.+.|.||++.|+||.|+.+ |.+|+|||.|-.+.|||....++++.+. +|++-|.++.|-|.. ....
T Consensus 43 E~eL~GH~GCVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t----nnri 109 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT----NNRI 109 (758)
T ss_pred hhhhccccceecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC----CCeE
Confidence 4678899999999999987 9999999999999999999888888774 799999999999973 1458
Q ss_pred EEEEeCCCcEEEEECCC----------CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 642 FLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 642 l~S~s~DgsV~lWdl~t----------~~~l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
++||+.|..|+|+|+.. ....+.+..|...|..++--|++ ..+.++++| |+|+-+|++.
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiRE 179 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIRE 179 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccC
Confidence 99999999999999984 23456677899999999999999 677888888 9999999986
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=121.85 Aligned_cols=190 Identities=21% Similarity=0.215 Sum_probs=137.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccccccccc
Q 000473 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1471)
Q Consensus 20 tava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s 99 (1471)
-+++|+.||..|+||+.||.+++|+... .........|.+.|.+|. |+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~---------------------------FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLD---------------------------FS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----chhhhhhHhhcCccccce---------------------------eC
Confidence 5799999999999999999999999753 445555668999999998 78
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCC-----eEEEEcc-------eecccCCc-----
Q 000473 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP-----RYVCIGC-------CFIDTNQL----- 162 (1471)
Q Consensus 100 ~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~-----~ll~~G~-------~~id~~~~----- 162 (1471)
||+++|+|-+.| ..+||++.+|.++.+..-... ..--.-|+|..++ ++++.-. +.+..|.-
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k-~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSK-DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCccc-chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 999999999999 899999999988876431100 1112233444333 3333211 11111111
Q ss_pred --ccccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCC
Q 000473 163 --SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVG 240 (1471)
Q Consensus 163 --~~~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG 240 (1471)
....-|++|-...++.|+++...+.+++.|.|++..+++.++-+...|.. .|+.+.|+|+ .+ .+...+.+.
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~--~VT~ltF~Pd---sr--~~~svSs~~ 346 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG--FVTGLTFSPD---SR--YLASVSSDN 346 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee--eeeeEEEcCC---cC--cccccccCC
Confidence 00122478888889999999999999999999999999999988865554 4999999954 33 344457788
Q ss_pred cEEEEECCCC
Q 000473 241 RLQLVPISKE 250 (1471)
Q Consensus 241 ~V~vW~l~~~ 250 (1471)
+..|..+.-+
T Consensus 347 ~~~v~~l~vd 356 (398)
T KOG0771|consen 347 EAAVTKLAVD 356 (398)
T ss_pred ceeEEEEeec
Confidence 8888887754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=118.35 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=116.1
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-CCC------CCccc------cCCcceEEEEecCCccEEEE
Q 000473 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSP------GASLK------VNSHVSRQYFLGHTGAVLCL 576 (1471)
Q Consensus 510 ~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~-d~~------~~~~d------~~s~~~~~~l~gH~~~V~~l 576 (1471)
..|+|+...+... ..++.+..+|...+++-....+. ..+ +..+. ..+..++..+.--.+.|+..
T Consensus 220 tsvT~ikWvpg~~---~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD---SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred cceEEEEEEeCCC---ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 5678877554332 37788889999998543211111 000 00000 11112333333335578889
Q ss_pred EEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000473 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1471)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl 656 (1471)
+|+|| +++|++-|.||.+||+|..+.+++..|+..-+...|++|+|| |++|++|++|--|.||.+
T Consensus 297 ~FS~D---------G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 297 AFSPD---------GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEcCC---------CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEEEe
Confidence 99997 999999999999999999999999999888899999999999 999999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcC
Q 000473 657 ETLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 657 ~t~~~l~~~~gh~~~V~~v~~sp 679 (1471)
..++.+..-+||.++|..|+|+|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999984
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-08 Score=107.17 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=95.3
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEE--EEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVL--VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 569 H~~~V~~la~spd~~~~~~~~~~~~L--~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s 646 (1471)
+.+.|.+++|+|+ ++.+ +.|..+..|.+||++ ++.+..+. ...+..+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~WsP~---------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAWSPN---------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEECcC---------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCC------CCEEEEEE
Confidence 3457999999997 5543 456678899999996 66666664 567889999999 99999987
Q ss_pred CC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 647 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 647 ~D---gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
.+ |.|.+||.++.+.+..+. |. .++.++|+|+|++++++...-. -..|..++||+. +|+++...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r--~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPR--LRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccc--eeccccEEEEEe-cCeEeEec
Confidence 54 669999999988887764 33 4789999999999999875211 111278999998 57766543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=126.38 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=122.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
++++|+.-|.|.+|.|. .+.+++ .+.||.+.+..+.++.| +.+++|.|+|.++|+|
T Consensus 147 ~i~~gsv~~~iivW~~~--------------~dn~p~-~l~GHeG~iF~i~~s~d---------g~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPH--------------EDNKPI-RLKGHEGSIFSIVTSLD---------GRYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEecc--------------ccCCcc-eecccCCceEEEEEccC---------CcEEEEEecCcceeee
Confidence 78999999999996654 112233 68999999999999987 8999999999999999
Q ss_pred ECCCCceEE-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC-CcEEEEEcCCCCEE
Q 000473 607 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 684 (1471)
Q Consensus 607 Dl~tg~~l~-~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~-~V~~v~~spdg~~L 684 (1471)
++++.+... +-.+|...|+++.|.|. .++|++.|-+.++|+.+ ++.+..+.+|.. .++.++..++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988765 66799999999999986 89999999999999765 555668888865 68999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 685 ~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
+|++.| +.+++||..+.-
T Consensus 274 vT~g~D--------s~lk~~~l~~r~ 291 (967)
T KOG0974|consen 274 VTGGND--------STLKLWDLNGRG 291 (967)
T ss_pred EeeccC--------cchhhhhhhccc
Confidence 999998 999999987643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.6e-08 Score=111.89 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=140.3
Q ss_pred ccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCccc
Q 000473 510 KIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 510 ~~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~ 587 (1471)
..|+++. |+|. .+++++.||.++++..+ -+....++.+.--.-++.+..|+|+
T Consensus 214 ~~I~sv~------FHp~~plllvaG~d~~lrifqvD-------------Gk~N~~lqS~~l~~fPi~~a~f~p~------ 268 (514)
T KOG2055|consen 214 GGITSVQ------FHPTAPLLLVAGLDGTLRIFQVD-------------GKVNPKLQSIHLEKFPIQKAEFAPN------ 268 (514)
T ss_pred CCceEEE------ecCCCceEEEecCCCcEEEEEec-------------CccChhheeeeeccCccceeeecCC------
Confidence 5688876 7776 78899999999996554 2223445555555678999999997
Q ss_pred CcCCC-EEEEEECCCcEEEEECCCCceE--EEEeccC-CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000473 588 WSFNE-VLVSGSMDCSIRIWDLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1471)
Q Consensus 588 ~~~~~-~L~SGs~DgtI~lWDl~tg~~l--~~~~~H~-~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~ 663 (1471)
|+ .+++++.-.....||+.+.+.. ..+.++. ..+....++|+ +++|+..|..|.|.|....+++.+.
T Consensus 269 ---G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd------~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 269 ---GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD------SNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred ---CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC------CCeEEEcccCceEEeehhhhhhhhh
Confidence 55 9999999999999999987743 3444443 45778889999 8999999999999999999999988
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 664 ~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
.+. -.+.|..++|+.|++.|++.|.+ |.|++||+++..+++.+.... .+-...+|
T Consensus 340 s~K-ieG~v~~~~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~rf~D~G-~v~gts~~ 394 (514)
T KOG2055|consen 340 SFK-IEGVVSDFTFSSDSKELLASGGT--------GEVYVWNLRQNSCLHRFVDDG-SVHGTSLC 394 (514)
T ss_pred eee-eccEEeeEEEecCCcEEEEEcCC--------ceEEEEecCCcceEEEEeecC-ccceeeee
Confidence 876 45669999999999999998888 999999999999999887654 34444466
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=115.26 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=124.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++|..||.+|||.|..+ ..+.....|.+.|.+|.|+|| +++|++-+.| ..+||
T Consensus 158 ~latgg~dg~lRv~~~Ps~---------------~t~l~e~~~~~eV~DL~FS~d---------gk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSM---------------LTILEEIAHHAEVKDLDFSPD---------GKFLASIGAD-SARVW 212 (398)
T ss_pred EeeeccccceEEEEecCcc---------------hhhhhhHhhcCccccceeCCC---------CcEEEEecCC-ceEEE
Confidence 8999999999999887622 334455679999999999998 8999999999 99999
Q ss_pred ECCCCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc------EEEEecCCCCCcEEEEEc
Q 000473 607 DLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------VERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 607 Dl~tg~~l~~~~~--H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~------~l~~~~gh~~~V~~v~~s 678 (1471)
|.++|..+..... .......+.|+-+..- +.-.+++....-+.|++|++...+ ..+....+ ..|.+++.+
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS 290 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVS 290 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEc
Confidence 9999976655542 2234556677766211 111234444455777777764322 11122223 359999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCCCceeeeeeec
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKG 730 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l-~gH~~~v~~~~~~~~ 730 (1471)
++|++++.|+.| |.|-|++..+-++++.. +.|..-|+.+.|+|+
T Consensus 291 ~dGkf~AlGT~d--------GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 291 DDGKFLALGTMD--------GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred CCCcEEEEeccC--------CcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 999999999999 99999999988877654 478888899999963
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-09 Score=122.12 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=129.2
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-EecCCccEEEEEEecC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRM 581 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l~gH~~~V~~la~spd 581 (1471)
+.+.+|.+-|+|+.+..+.. .|++|+.|-.+.| |+. -..+++.. -.||++.|.|+.|-|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~iv--Wd~-------------~~~KllhsI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE----LLASGSDDTRLIV--WDP-------------FEYKLLHSISTGHTANIFSVKFVPY 104 (758)
T ss_pred hhhccccceecceeecCCCC----EEeecCCcceEEe--ecc-------------hhcceeeeeecccccceeEEeeecc
Confidence 45789999999999887777 7999999999999 552 22344444 3799999999999986
Q ss_pred CCCcccCcCCCEEEEEECCCcEEEEECCC----------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000473 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1471)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtI~lWDl~t----------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV 651 (1471)
. +++.++||..|..|+++|+.. .+..+.+..|...|..++..|+. .+.|.++++||++
T Consensus 105 t-------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDGti 172 (758)
T KOG1310|consen 105 T-------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDGTI 172 (758)
T ss_pred C-------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCcce
Confidence 2 478999999999999999984 23456677899999999999983 4899999999999
Q ss_pred EEEECCCCc-------EEE---EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 652 ALASLETLR-------VER---MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 652 ~lWdl~t~~-------~l~---~~~gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
+-+|++... +.. .+....-...++..+|... +|++|+.| --.++||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd--------pfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD--------PFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC--------chhhhhhhh
Confidence 999998631 111 1111222457899999765 77888887 889999963
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=104.22 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=111.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe---cCCccEEEEEEecCCCCcccCcCCCEEE-EEE-CCC
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL---GHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGS-MDC 601 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~---gH~~~V~~la~spd~~~~~~~~~~~~L~-SGs-~Dg 601 (1471)
+++..-++ .|.|++.. +.+.++++. .|...+.++.+++. +.+++ -++ .-|
T Consensus 99 RLvV~Lee-~IyIydI~---------------~MklLhTI~t~~~n~~gl~AlS~n~~---------n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIK---------------DMKLLHTIETTPPNPKGLCALSPNNA---------NCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEEcc-cEEEEecc---------------cceeehhhhccCCCccceEeeccCCC---------CceEEecCCCCCc
Confidence 45555444 48885443 334444442 34445666655553 34444 233 357
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE-EEEECCCCcEEEEecCCCC--CcEEEEEc
Q 000473 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV-ALASLETLRVERMFPGHPN--YPAKVVWD 678 (1471)
Q Consensus 602 tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV-~lWdl~t~~~l~~~~gh~~--~V~~v~~s 678 (1471)
.|.+||+.+-+....+..|.+++-+++|+|+ |..+||+|+.|+| ||+++.+|+.+.+|+.... .|.+++|+
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 8999999999999999999999999999999 9999999999985 9999999999999976544 46899999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
|++.+|.+.+.. ++|+|+.++...
T Consensus 228 ~ds~~L~~sS~T--------eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 228 PDSQFLAASSNT--------ETVHIFKLEKVS 251 (391)
T ss_pred CCCCeEEEecCC--------CeEEEEEecccc
Confidence 999999988887 999999987644
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=117.97 Aligned_cols=202 Identities=16% Similarity=0.218 Sum_probs=144.9
Q ss_pred cEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000473 511 IVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1471)
Q Consensus 511 ~Vts~~~is~~~f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~ 588 (1471)
.|..+. |-|+ .|++++..|-+.. . |+.+|+.+..+.--.+.+..+.-.|.
T Consensus 211 ~v~rLe------FLPyHfLL~~~~~~G~L~Y---~------------DVS~GklVa~~~t~~G~~~vm~qNP~------- 262 (545)
T KOG1272|consen 211 RVARLE------FLPYHFLLVAASEAGFLKY---Q------------DVSTGKLVASIRTGAGRTDVMKQNPY------- 262 (545)
T ss_pred chhhhc------ccchhheeeecccCCceEE---E------------eechhhhhHHHHccCCccchhhcCCc-------
Confidence 455555 5554 7888888888774 2 56677777777777788888888886
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000473 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1471)
Q Consensus 589 ~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh 668 (1471)
+..+-.|...|+|.+|.....+++..+..|.++|.+|++.|. |++++|.|.|+.|+|||++....++++..
T Consensus 263 --NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 263 --NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred --cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeeccccccceeec-
Confidence 789999999999999999999999999999999999999999 99999999999999999998887777655
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE-CCC--CeEEEEEeCCC--CCceeeeeeeccccccccceEEcC
Q 000473 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGTA--SHSMFDHFCKGISMNSISGSVLNG 743 (1471)
Q Consensus 669 ~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD-i~t--g~~~~~l~gH~--~~v~~~~~~~~~~~~~~sg~v~~g 743 (1471)
..+...+++|-.| .|+.+-. ..|.||. .-. +.....+.-|. +.|..+.|||.-+.- |.=.
T Consensus 334 p~~a~~ls~Sqkg-lLA~~~G---------~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvL---GIGH-- 398 (545)
T KOG1272|consen 334 PHPASNLSLSQKG-LLALSYG---------DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVL---GIGH-- 398 (545)
T ss_pred CCCcccccccccc-ceeeecC---------CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHee---eccc--
Confidence 5567888898544 5555444 3799994 322 23333333443 366677899732211 1111
Q ss_pred CccccccceeeccCCceEeec
Q 000473 744 NTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 744 ~~~~s~~l~~~~~D~tir~w~ 764 (1471)
....++.++|-+-|-.+-.|.
T Consensus 399 ~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 399 AGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred cCCceeEeccCCCCCCcchhc
Confidence 122245556655555444443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=114.12 Aligned_cols=237 Identities=15% Similarity=0.096 Sum_probs=157.7
Q ss_pred CCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEE
Q 000473 497 QAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1471)
Q Consensus 497 ~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~l 576 (1471)
+.|.++..+..|...|..++..++.. ..+++|+.||+|++|+...+.+. ..+.++..++.--..++.++
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCC---ceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEE
Confidence 44667777888999888887666652 27999999999999655543331 12234445555456778888
Q ss_pred EEecCCCCcccCcCCCEEEEEECCCcEEEEECCC--Cc-----------------eE--EE-------------------
Q 000473 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GN-----------------LI--TV------------------- 616 (1471)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t--g~-----------------~l--~~------------------- 616 (1471)
...+. ++.++.|+.||.|++.+++. .+ .+ +-
T Consensus 1105 t~~~~---------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1105 TMCGN---------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred EeccC---------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 88775 78888889999999998864 10 00 00
Q ss_pred ---------------EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCC
Q 000473 617 ---------------MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCP 680 (1471)
Q Consensus 617 ---------------~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~-gh~~~V~~v~~spd 680 (1471)
..-..|.|++++.+|. ++.++.|..-|.+.+||++-+.++.... .+..+++.|..+|.
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 0112356778888777 8899999999999999999887776543 34467888877664
Q ss_pred C---CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeecc---ccccccceEEcCCccccccceee
Q 000473 681 R---GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLPI 754 (1471)
Q Consensus 681 g---~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~---~~~~~sg~v~~g~~~~s~~l~~~ 754 (1471)
. ...++++.. +.+.|.+|++++|.+-.++-.-.....+..+.|.. .+....| +.+|--....-+++.
T Consensus 1250 ~~~~S~~vs~~~~------~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~-~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSS------SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAG-ISCGVCEKNGFLLTG 1322 (1431)
T ss_pred CCCCceEEEeccc------CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccc-eeeecccCCceeeec
Confidence 3 466665552 23789999999998887776554444444444321 0111111 123334445556666
Q ss_pred ccCCceEeeccc
Q 000473 755 HEDGTFRQSQIQ 766 (1471)
Q Consensus 755 ~~D~tir~w~l~ 766 (1471)
..|..||.|+..
T Consensus 1323 gsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPT 1334 (1431)
T ss_pred CCccceeeccCC
Confidence 679999999963
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-08 Score=115.70 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=112.4
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~ 635 (1471)
|...|...++++||.+.|+|++|+.| |+.++||+.|..|.+|+-.-... ..+ .|+..|.|+.|+|-
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~d---------GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~--- 104 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKD---------GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPI--- 104 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccC---------CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCch---
Confidence 35567889999999999999999997 99999999999999998643222 222 59999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
.+.++|++-. ...+|+........ . .....+.+.+|..||.|++.|-.| |+|.+=+- +|+.--.+
T Consensus 105 ---~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~n--------GTIsiRNk-~gEek~~I 169 (1081)
T KOG1538|consen 105 ---THQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFN--------GTISIRNK-NGEEKVKI 169 (1081)
T ss_pred ---HHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccC--------ceEEeecC-CCCcceEE
Confidence 7888888743 46789876533221 1 123468899999999999999998 99999864 55543222
Q ss_pred ---eCCCCCceeeeeeec
Q 000473 716 ---RGTASHSMFDHFCKG 730 (1471)
Q Consensus 716 ---~gH~~~v~~~~~~~~ 730 (1471)
-|..+.+..+.||+.
T Consensus 170 ~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred eCCCCCCCCceEEEecCC
Confidence 357788999988864
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=110.49 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=119.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe--cCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~--gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~ 604 (1471)
.++.|...|.|.+ +. +..++....+. +|.+.|+++.++.+ -..|-|++.|+.+.
T Consensus 72 ~lvlgt~~g~v~~--ys-------------~~~g~it~~~st~~h~~~v~~~~~~~~---------~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 72 MLVLGTPQGSVLL--YS-------------VAGGEITAKLSTDKHYGNVNEILDAQR---------LGCIYSVGADLKVV 127 (541)
T ss_pred EEEeecCCccEEE--EE-------------ecCCeEEEEEecCCCCCcceeeecccc---------cCceEecCCceeEE
Confidence 6888999999888 33 23445555554 69999999998875 67899999999999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC----
Q 000473 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP---- 680 (1471)
Q Consensus 605 lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spd---- 680 (1471)
.|+...++.++.+.+....+.++.++|| +..+++++ +.|++||+++++.+..|.||.++|.++.|--+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKEKVIIRIWKEQKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEecccceeeeeeccCCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 9999999999999999999999999999 89999886 68999999999999999999999999999776
Q ss_pred -CCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 681 -g~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
|.|++++..- +.-+.+|-++.
T Consensus 200 ~G~~vLssa~~-------~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAA-------ERGITVWVVEK 221 (541)
T ss_pred ccceeeecccc-------ccceeEEEEEc
Confidence 6676654322 14577776543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=115.57 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=142.4
Q ss_pred eecccccCccccccccCCCC--CCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~--~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~ 555 (1471)
++....+|.|-+||+..... +.........|...++++..+.... +..+++++.||.|..|.-+++... ...-
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P---~e~~ 332 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLP---VEGL 332 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccc---hhhc
Confidence 56677889999999987655 3333344467888888887666443 235899999999999765544321 1000
Q ss_pred ccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE---EECCCCc-----eEEEEeccCCCEEE
Q 000473 556 KVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI---WDLGSGN-----LITVMHHHVAPVRQ 626 (1471)
Q Consensus 556 d~~s~~~-~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l---WDl~tg~-----~l~~~~~H~~~V~~ 626 (1471)
..++... ...+ .-...+++++|.+. +...++.|+.+|.|.- ++...+. .+..+..|.++|.+
T Consensus 333 ~~~~~~~~~~~~-~~~~~~t~~~F~~~--------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 333 LLESKKHKGQQS-SKAVGATSLKFEPT--------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred cccccccccccc-ccccceeeEeeccC--------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 0000000 0011 12346899999986 3788999999998876 4443332 23466778999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 627 l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~-t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+.++|=. -..|++++ |.+|+||+.. ...++..+..+...|++++|||...-++....+ +|.|.+||
T Consensus 404 v~~nPF~-----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-------~G~l~iWD 470 (555)
T KOG1587|consen 404 VSRNPFY-----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-------DGNLDIWD 470 (555)
T ss_pred eecCCCc-----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-------CCceehhh
Confidence 9999972 33566666 9999999988 778888888899999999999998755544432 39999999
Q ss_pred CCCCe
Q 000473 706 VKTGA 710 (1471)
Q Consensus 706 i~tg~ 710 (1471)
+....
T Consensus 471 Ll~~~ 475 (555)
T KOG1587|consen 471 LLQDD 475 (555)
T ss_pred hhccc
Confidence 97543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-07 Score=111.97 Aligned_cols=164 Identities=9% Similarity=0.096 Sum_probs=113.7
Q ss_pred ccCC--EEEEEE-cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEE-EEE
Q 000473 523 YAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGS 598 (1471)
Q Consensus 523 f~P~--~lv~Gs-~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~-SGs 598 (1471)
|+|+ .++++. .+|.+.||.++ ..++. ...+.+|...+....|+|| ++.|+ ++.
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d-------------~~~~~-~~~lt~~~~~~~~~~wSpD---------G~~i~f~s~ 311 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMG-------------ANGGT-PSQLTSGAGNNTEPSWSPD---------GQSILFTSD 311 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEE-------------CCCCC-eEeeccCCCCcCCEEECCC---------CCEEEEEEC
Confidence 6665 676654 68888886665 22333 3456677778889999998 66555 555
Q ss_pred CCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000473 599 MDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 599 ~DgtI~lWDl~tg-~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~ 677 (1471)
.++...+|++... .....+ .+.+ ....|+|+ |+.++.++.|+ +.+||+.+++.......+ ....+.|
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD------G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~ 379 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD------GKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSI 379 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC------CCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceE
Confidence 6888899887532 222333 4443 45678888 89998888776 455999988765443332 2456889
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCCCceeeeeee
Q 000473 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 678 spdg~~L~sgs~D~sg~~D~~gtV~VWDi--~tg~~~~~l~gH~~~v~~~~~~~ 729 (1471)
+|+|++|+.++.+ +.+++|++ .+|...+.+.+|.+.+....|+|
T Consensus 380 sPdG~~i~~~s~~--------g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 380 SPNGIMIIYSSTQ--------GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCCEEEEEEcC--------CCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 9999999999887 66777765 36888999998887665555553
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=117.22 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=116.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-EecCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~-~~~gh~ 669 (1471)
.-++++|+.-+.|.+|+..--+.-..+.+|.+.|.++.++-+ |.+++|+|+|.++|+|++++.+... ..-||.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCccccccc
Confidence 568999999999999999733333468899999999999999 9999999999999999999988876 677999
Q ss_pred CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccc
Q 000473 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 749 (1471)
Q Consensus 670 ~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~ 749 (1471)
.+|+.++|.|. ++++++.| .+.++|+. .++.+.++.+|..+-+---..+....
T Consensus 219 aRvw~~~~~~n--~i~t~ged--------ctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~---------------- 271 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGED--------CTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVI---------------- 271 (967)
T ss_pred ceeEEEEeccc--eeEEeccc--------eEEEEEec-ccceehhhhhhhhcceeEEEEcCCce----------------
Confidence 99999999998 89999999 99999975 45666699999875554322221111
Q ss_pred cceeeccCCceEeecccccc
Q 000473 750 LLLPIHEDGTFRQSQIQNDE 769 (1471)
Q Consensus 750 ~l~~~~~D~tir~w~l~~~~ 769 (1471)
..++-..|+++|.|++....
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEeeccCcchhhhhhhccc
Confidence 12333348999999876544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.8e-08 Score=112.93 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=112.4
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
.....|.+.+.|-...++.. .+++.++||.|++ |. .+|-...++.....+|.|++|.|+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGt----gLlt~GEDG~iKi--WS--------------rsGMLRStl~Q~~~~v~c~~W~p~- 156 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGA----GLLTAGEDGVIKI--WS--------------RSGMLRSTVVQNEESIRCARWAPN- 156 (737)
T ss_pred hhhhhhhhhhhhcccCCCCc----eeeeecCCceEEE--Ee--------------ccchHHHHHhhcCceeEEEEECCC-
Confidence 44678888888765333333 8999999999999 43 123333344445678999999998
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l 662 (1471)
++..+.+.+....|+ -+.....+-.++.|.|-|.++.|+|. .+.++|||+|-..++||-. |+.+
T Consensus 157 -------S~~vl~c~g~h~~IK--pL~~n~k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 157 -------SNSIVFCQGGHISIK--PLAANSKIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIWDAQ-GANL 220 (737)
T ss_pred -------CCceEEecCCeEEEe--ecccccceeEEeccCcEEEEeecCcc------ccceeecCCceeEEeeccc-Cccc
Confidence 267777766554444 45444556788999999999999998 8999999999999999976 6666
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000473 663 RMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 663 ~~~~gh~~~V~~v~~spdg~~L~sgs~D 690 (1471)
..-..|..+|++|+|.|+ ..++.++.+
T Consensus 221 f~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ccCChhccceeeeeeccc-cceeeeeee
Confidence 666778889999999998 455566664
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=103.61 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=127.6
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~ 588 (1471)
...|+|-++.++.. .++.+..+..+.|+.+. .. +--+..++|..|...|+++.|.|.
T Consensus 10 ~~pitchAwn~drt----~iAv~~~~~evhiy~~~-------~~-----~~w~~~htls~Hd~~vtgvdWap~------- 66 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT----QIAVSPNNHEVHIYSML-------GA-----DLWEPAHTLSEHDKIVTGVDWAPK------- 66 (361)
T ss_pred cCceeeeeecCCCc----eEEeccCCceEEEEEec-------CC-----CCceeceehhhhCcceeEEeecCC-------
Confidence 35788887555555 89999999999996654 11 112567889999999999999997
Q ss_pred cCCCEEEEEECCCcEEEEECCC---CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE---
Q 000473 589 SFNEVLVSGSMDCSIRIWDLGS---GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE--- 662 (1471)
Q Consensus 589 ~~~~~L~SGs~DgtI~lWDl~t---g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l--- 662 (1471)
.+.|++++.|..-.||.... .++.-.+.-|...++++.|+|. ++.|+.||.-+.|.||=++...--
T Consensus 67 --snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 67 --SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred --CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceehh
Confidence 78999999999999999833 3455667778899999999999 899999999999999987643221
Q ss_pred -EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 663 -RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 663 -~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
+.-..+.+.|.++.|+|++-+|++||.| +..||+..
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D--------~k~rVfSa 175 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTD--------GKCRVFSA 175 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccC--------cceeEEEE
Confidence 1223356678999999999999999999 99999874
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=106.34 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=107.4
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC------CCceEEEEec-cCCCEEEEEECCCCCC
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------SGNLITVMHH-HVAPVRQIILSPPQTE 635 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~------tg~~l~~~~~-H~~~V~~l~fspd~~~ 635 (1471)
.+-+.+|.+.|+++.|+.+ +++|+||+.|..+++|++. +.+++..+.. |...|.+++|...
T Consensus 49 qKD~~~H~GCiNAlqFS~N---------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--- 116 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN---------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--- 116 (609)
T ss_pred hhhhhhhccccceeeeccC---------CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---
Confidence 3456799999999999986 8999999999999999985 4567776654 4588999999887
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~g--h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
...+.+|+.|++|.+-|+++.+.+..+.- ..+.|+.+.-+|.++.|++.+.+ +.|.+||++..+
T Consensus 117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~--------~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA--------KLVSFIDNRDRQ 182 (609)
T ss_pred ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC--------ceEEEEeccCCC
Confidence 67899999999999999999998888752 23489999999999999999998 999999998654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=111.47 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=127.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++..+.||.+.+. . +.++..+....|.++|.|-.|+|| |.-|+|.+.||.|++|
T Consensus 77 ~~~i~s~DGkf~il--~--------------k~~rVE~sv~AH~~A~~~gRW~~d---------GtgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 77 TLLICSNDGRFVIL--N--------------KSARVERSISAHAAAISSGRWSPD---------GAGLLTAGEDGVIKIW 131 (737)
T ss_pred eEEEEcCCceEEEe--c--------------ccchhhhhhhhhhhhhhhcccCCC---------CceeeeecCCceEEEE
Confidence 47778899999982 2 234555677899999999999998 8999999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~s 686 (1471)
. ++|-+..++.....+|.|++|.|+. ...+.+.+. .+.+=.+.-...+.....|.+-|.++.|+|..+.+++
T Consensus 132 S-rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 132 S-RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred e-ccchHHHHHhhcCceeEEEEECCCC-----CceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 8 5676666777778899999999993 334444443 3444555555555667889999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeec
Q 000473 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 730 (1471)
Q Consensus 687 gs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~ 730 (1471)
|++| -..+|||-. |+.+-.-..|.-.++.+.|.|+
T Consensus 204 gGED--------~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 204 GGED--------FRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred cCCc--------eeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 9999 999999964 6666666777777888777754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=109.95 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=126.0
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+.-....+.+||.+.++........ .-....|+.+.++.+.. -..+++|+.||.|+| |+.... .|
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~-~~~~t~Vs~l~liNe~D--~aLlLtas~dGvIRI--wk~y~~------~~-- 1145 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNG-AFPDTRVSDLELINEQD--DALLLTASSDGVIRI--WKDYAD------KW-- 1145 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCC-CCCCCccceeeeecccc--hhheeeeccCceEEE--eccccc------cc--
Confidence 334444567888988776442211111 11235688877666543 127899999999999 542211 11
Q ss_pred CCcceEEEE---ecC----CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec-cCCCEEEEEE
Q 000473 558 NSHVSRQYF---LGH----TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-HVAPVRQIIL 629 (1471)
Q Consensus 558 ~s~~~~~~l---~gH----~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~-H~~~V~~l~f 629 (1471)
+..+.+..+ .++ .+.-.-+.|... ..+|+++|.-..|++||.......+.+.. -...|+++.-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~---------~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ---------SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhh---------CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 112222222 121 111123456554 33444444588999999998777765543 3445666654
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCC--cEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEE
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNY--PAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFI 703 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~---~l~~~~gh~~~--V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~V 703 (1471)
+-. .|+.++.|..||+|++||.+... .+.....|... |..+.+.+.|- .|++||.| |.|++
T Consensus 1217 ~~~-----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~--------G~I~~ 1283 (1387)
T KOG1517|consen 1217 DLV-----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD--------GDIQL 1283 (1387)
T ss_pred ccc-----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC--------CeEEE
Confidence 333 28999999999999999997543 46777888887 99999988665 49999999 99999
Q ss_pred EECCCC
Q 000473 704 WDVKTG 709 (1471)
Q Consensus 704 WDi~tg 709 (1471)
||++..
T Consensus 1284 ~DlR~~ 1289 (1387)
T KOG1517|consen 1284 LDLRMS 1289 (1387)
T ss_pred EecccC
Confidence 999874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.5e-08 Score=113.04 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=119.3
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000473 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 560 ~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
|..++.++.| ..|..|.|-|- --+|++++..|-++.-|+.+|+++..+..-.+.+..+.-+|- .
T Consensus 200 GtElHClk~~-~~v~rLeFLPy---------HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------N 263 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPY---------HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------N 263 (545)
T ss_pred CcEEeehhhc-Cchhhhcccch---------hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------c
Confidence 4556677666 46899999986 578899999999999999999999999888899999999997 6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
..+..|...|+|.+|+....+++..+..|.++|.+|++.++|.|++|.+.| ..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D--------r~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD--------RKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc--------cceeEeeeccccccceeec
Confidence 789999999999999999999998889999999999999999999999999 9999999998776666554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00018 Score=87.24 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=61.8
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE----ECCCcEEEEECCCCceEEEEeccC-CCEEEEEEC
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG----SMDCSIRIWDLGSGNLITVMHHHV-APVRQIILS 630 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SG----s~DgtI~lWDl~tg~~l~~~~~H~-~~V~~l~fs 630 (1471)
+..+.+.++.+....+. .-+..||+ ++++... ....+|.++|.++.+...++.... ..+..+.|+
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~---------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPD---------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT----------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCC---------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 34445667777766666 66777997 6666665 556899999999998877775433 358999999
Q ss_pred CCCCCCCCCC-EEEEEeCCC-cEEEEECCCCcEEEEec
Q 000473 631 PPQTEHPWSD-CFLSVGEDF-SVALASLETLRVERMFP 666 (1471)
Q Consensus 631 pd~~~~~~~~-~l~S~s~Dg-sV~lWdl~t~~~l~~~~ 666 (1471)
++ |. ..+|.-.++ .|.++|..+.+.+..++
T Consensus 325 ~d------G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 PD------GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TT------SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CC------CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99 66 444554444 89999999999998876
|
... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-06 Score=102.61 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=112.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~--~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh 668 (1471)
...++-|...|.|-++++..|+....+. .|.+.|.++.++-+ -.||.|++.|..+..|+..+++.++.+.+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccC
Confidence 4578889999999999999999888886 59999999998887 779999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 669 ~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
...+.+++.+||+..|++++ +.|++||+++++.+++++||.+.|-+..|.
T Consensus 144 ~~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 88999999999999999887 579999999999999999999999888777
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=96.79 Aligned_cols=192 Identities=12% Similarity=0.038 Sum_probs=143.1
Q ss_pred ecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000473 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1471)
Q Consensus 479 ~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1471)
+.+..+.-+.+++..+..+. ....++..|...|+.+...+... +|++++.|..-.| |....+ .
T Consensus 26 Av~~~~~evhiy~~~~~~~w-~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayV--w~~~~~----------~ 88 (361)
T KOG1523|consen 26 AVSPNNHEVHIYSMLGADLW-EPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYV--WTQPSG----------G 88 (361)
T ss_pred EeccCCceEEEEEecCCCCc-eeceehhhhCcceeEEeecCCCC----ceeEccCCCCccc--cccCCC----------C
Confidence 33444445555555554321 34567889999999987444433 8999999999999 553221 1
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE----EEEeccCCCEEEEEECCCCC
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI----TVMHHHVAPVRQIILSPPQT 634 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l----~~~~~H~~~V~~l~fspd~~ 634 (1471)
+-++...|..|+..++|+.|+|. ++.++.||.-..|.||-++..+-- +.-+.+...|.++.|+|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~---------enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-- 157 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPK---------ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-- 157 (361)
T ss_pred eeccceeEEEeccceeeEeecCc---------CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC--
Confidence 23456677889999999999997 899999999999999998754421 333456778999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEEC-----CC-------------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000473 635 EHPWSDCFLSVGEDFSVALASL-----ET-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1471)
Q Consensus 635 ~~~~~~~l~S~s~DgsV~lWdl-----~t-------------~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D 696 (1471)
.-+++.||.|+.+++++. ++ |..+.++....+.|..+.|+|.|..|+-.+.|
T Consensus 158 ----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------ 227 (361)
T KOG1523|consen 158 ----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------ 227 (361)
T ss_pred ----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC------
Confidence 789999999999999964 21 23344454566789999999999999999998
Q ss_pred CCCEEEEEECCCCe
Q 000473 697 AVDVLFIWDVKTGA 710 (1471)
Q Consensus 697 ~~gtV~VWDi~tg~ 710 (1471)
.+|.+=|.....
T Consensus 228 --s~v~~~da~~p~ 239 (361)
T KOG1523|consen 228 --STVSFVDAAGPS 239 (361)
T ss_pred --CceEEeecCCCc
Confidence 899999876553
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-07 Score=100.28 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=129.6
Q ss_pred ccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEe
Q 000473 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAH 579 (1471)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~la~s 579 (1471)
+.+.+.+|.+-|+++.+..... .|++|+.|-.+++|..+.+.- ..+.++++.... |...|.||+|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~~---------~k~~KPI~~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELMV---------RKTPKPIGVMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe----EEeecCCcceeeeechHHHHh---------hcCCCCceeccCccccceEEEEEc
Confidence 4455678999999988555544 699999999999955442211 133456655433 44789999998
Q ss_pred cCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000473 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~--H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~ 657 (1471)
.. +.++.||+.+++|.+-|+.+.+.+.++.. ..+.|..+..+|. .+.|++.+.|+.|.+||.+
T Consensus 115 ~~---------N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 115 LE---------NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred cC---------CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC------CceEEEEecCceEEEEecc
Confidence 75 78999999999999999999998888753 3468999999998 8999999999999999998
Q ss_pred CCc-EEEE-ec-CCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 658 TLR-VERM-FP-GHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 658 t~~-~l~~-~~-gh~~~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
... .+.. ++ ........+.|+|... +|++.+.. +-+-+||++..
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~--------~G~~~~D~R~~ 227 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSET--------GGPNVFDRRMQ 227 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEecccc--------CCCCceeeccc
Confidence 654 2211 11 1233467899999876 55666655 78999998754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-06 Score=106.97 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=117.2
Q ss_pred ccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-------ceEEEEeccCCCEEE
Q 000473 554 SLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQ 626 (1471)
Q Consensus 554 ~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-------~~l~~~~~H~~~V~~ 626 (1471)
.|+. .|..+..|..|...|..++.++.+ +.+++|||.||+|++||+..- +...++..-.+.+.+
T Consensus 1033 gW~p-~G~lVAhL~Ehs~~v~k~a~s~~~--------~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1033 GWNP-RGILVAHLHEHSSAVIKLAVSSEH--------TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CCCc-cceEeehhhhccccccceeecCCC--------CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE
Confidence 4665 367888999999999999998763 689999999999999998631 123344445678999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-------------------cEEEEe----------------------
Q 000473 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETL-------------------RVERMF---------------------- 665 (1471)
Q Consensus 627 l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-------------------~~l~~~---------------------- 665 (1471)
+.+.+. ++.+|.++.||.|++.+++-. ..+.+.
T Consensus 1104 vt~~~~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1104 VTMCGN------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred EEeccC------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 999988 899999999999999987541 000000
Q ss_pred --------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCCceeeeeee
Q 000473 666 --------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCK 729 (1471)
Q Consensus 666 --------------~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~-gH~~~v~~~~~~~ 729 (1471)
....+.|++++.+|.+.+++.|..- |.+-+||++-+.++.... +|.+.+.-+..|+
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~--------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR--------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC--------ceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 0112468999999999999999887 999999999998887754 5566776666664
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-06 Score=91.12 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=89.3
Q ss_pred EEEEECCC-CceEEEEec-cCCCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000473 603 IRIWDLGS-GNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 603 I~lWDl~t-g~~l~~~~~-H~~~V~~l~fspd~~~~~~~~~l~S~--s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~s 678 (1471)
..+|.++. +.....+.- ..++|.+++|+|+ |+.|+.+ ..+..|.+||++ ++.+..+. ...+..|.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 44444422 233444433 4567999999999 7876544 467899999997 67777764 4678899999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCC
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ 758 (1471)
|+|++|++++.+ +..|.|.+||+++.+.+...... .+..+.|+|. +-.+++..+... ...|.
T Consensus 110 P~G~~l~~~g~~-----n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPd------Gr~~~ta~t~~r-----~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG-----NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPD------GRYLATATTSPR-----LRVDN 171 (194)
T ss_pred CCCCEEEEEEcc-----CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCC------CCEEEEEEeccc-----eeccc
Confidence 999999998754 22278999999998888776432 3445556642 112222222111 12378
Q ss_pred ceEeecc
Q 000473 759 TFRQSQI 765 (1471)
Q Consensus 759 tir~w~l 765 (1471)
.+++|+.
T Consensus 172 g~~Iw~~ 178 (194)
T PF08662_consen 172 GFKIWSF 178 (194)
T ss_pred cEEEEEe
Confidence 8999986
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=96.41 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=119.4
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~---~lv~Gs~DG~I~V~~~~~l~~~d~~~~~ 554 (1471)
++....+..|++++.....+. .+... ....|+|++ |.|. -++.|+..| |.+|..+.-....+..+
T Consensus 113 fava~nddvVriy~ksst~pt-~Lks~---sQrnvtcla------wRPlsaselavgCr~g-IciW~~s~tln~~r~~~- 180 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPT-KLKSV---SQRNVTCLA------WRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR- 180 (445)
T ss_pred hhhhccCcEEEEeccCCCCCc-eecch---hhcceeEEE------eccCCcceeeeeecce-eEEEEcCcccccccccc-
Confidence 445556667777776553321 11111 124688888 5554 688888765 56643331110000000
Q ss_pred cccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE-CCCcEEEEECCCCceEEEEeccCCCEEEEEECCC
Q 000473 555 LKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1471)
Q Consensus 555 ~d~~s~-~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs-~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd 632 (1471)
-..++ -.+..-.|| ..|+++.|.+| +..+++++ .|..|.+||..+|..+....--.+.+.-+.|+||
T Consensus 181 -~~s~~~~qvl~~pgh-~pVtsmqwn~d---------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 181 -MMSTHHLQVLQDPGH-NPVTSMQWNED---------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred -cccccchhheeCCCC-ceeeEEEEcCC---------CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 00111 112223466 68999999997 78888887 5568999999998876554445577899999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEEC-CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEc
Q 000473 633 QTEHPWSDCFLSVGEDFSVALASL-ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1471)
Q Consensus 633 ~~~~~~~~~l~S~s~DgsV~lWdl-~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~ 689 (1471)
++.|..+.-|+..++|+. ++..+.+-..+. +.|...+|+|+|++|+-.+.
T Consensus 250 ------gd~lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 250 ------GDVLFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ------CCEEEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEc
Confidence 999999999999999955 445555544443 38999999999999988776
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00012 Score=84.15 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=81.5
Q ss_pred CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCc-EEEEECCCCc
Q 000473 534 SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLGSGN 612 (1471)
Q Consensus 534 DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dgt-I~lWDl~tg~ 612 (1471)
.|+|.+ |+ ..+-+++..+..|.+.+-|++|+++ |.+|+|+|..|+ |||+++.+|+
T Consensus 152 ~GdV~l--~d-------------~~nl~~v~~I~aH~~~lAalafs~~---------G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 152 SGDVVL--FD-------------TINLQPVNTINAHKGPLAALAFSPD---------GTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred CceEEE--EE-------------cccceeeeEEEecCCceeEEEECCC---------CCEEEEeccCceEEEEEEcCCcc
Confidence 688888 33 3345778889999999999999998 999999999996 5799999999
Q ss_pred eEEEEeccC--CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000473 613 LITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 613 ~l~~~~~H~--~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t 658 (1471)
.+..|+--. ..|.+++|+|+ +++|++.|..++|.++.+++
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~d------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPD------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCC------CCeEEEecCCCeEEEEEecc
Confidence 999987544 35789999999 89999999999999998864
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=96.82 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=111.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
.++.+..|..|++++-. + .....++. -...|+|++|-|. ....|+.|...| |++
T Consensus 112 ~fava~nddvVriy~ks---------------s-t~pt~Lks~sQrnvtclawRPl--------saselavgCr~g-Ici 166 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKS---------------S-TCPTKLKSVSQRNVTCLAWRPL--------SASELAVGCRAG-ICI 166 (445)
T ss_pred hhhhhccCcEEEEeccC---------------C-CCCceecchhhcceeEEEeccC--------Ccceeeeeecce-eEE
Confidence 57888889999993321 1 11222222 2346999999997 256777776655 899
Q ss_pred EECCCC----ceE----------EEEeccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCcEEEEECCCCcEEEEecCCCC
Q 000473 606 WDLGSG----NLI----------TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 606 WDl~tg----~~l----------~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s-~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
|..... ..+ ..-.+| .+|+++.|.+| |..+++++ .|..|.|||..++.++.......+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 987521 111 122345 58999999999 88899887 478999999999988776655566
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE-ECCCCeEEEEEeCCC
Q 000473 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW-DVKTGARERVLRGTA 719 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VW-Di~tg~~~~~l~gH~ 719 (1471)
.+.-+.||||+.+|+++.-| +..++| .-++...++-..|..
T Consensus 240 g~slLkwSPdgd~lfaAt~d--------avfrlw~e~q~wt~erw~lgsg 281 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCD--------AVFRLWQENQSWTKERWILGSG 281 (445)
T ss_pred ceeeEEEcCCCCEEEEeccc--------ceeeeehhcccceecceeccCC
Confidence 78999999999999999999 999999 445666666665554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-06 Score=93.48 Aligned_cols=177 Identities=11% Similarity=0.084 Sum_probs=120.5
Q ss_pred cCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceE
Q 000473 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1471)
Q Consensus 484 ~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~ 563 (1471)
.+.+-+||-....+. .++. -...|.++. +.++++|..- .+.|.||.+.. | .+..
T Consensus 74 pNkviIWDD~k~~~i----~el~-f~~~I~~V~------l~r~riVvvl-~~~I~VytF~~-----------n---~k~l 127 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCI----IELS-FNSEIKAVK------LRRDRIVVVL-ENKIYVYTFPD-----------N---PKLL 127 (346)
T ss_pred CceEEEEecccCcEE----EEEE-eccceeeEE------EcCCeEEEEe-cCeEEEEEcCC-----------C---hhhe
Confidence 345677885543332 2211 234566655 5666677655 57889966541 1 1222
Q ss_pred EEEecC--CccEEEEEEecCCCCcccCcCCCEEE-EEECCCcEEEEECCCCce--EEEEeccCCCEEEEEECCCCCCCCC
Q 000473 564 QYFLGH--TGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 564 ~~l~gH--~~~V~~la~spd~~~~~~~~~~~~L~-SGs~DgtI~lWDl~tg~~--l~~~~~H~~~V~~l~fspd~~~~~~ 638 (1471)
+.+.-- ...+.++ .|.. ...+|+ -|-.-|.|++-|+..-+. -..+.+|...|.+++.+-+
T Consensus 128 ~~~et~~NPkGlC~~--~~~~-------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------ 192 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSL--CPTS-------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------ 192 (346)
T ss_pred eeeecccCCCceEee--cCCC-------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------
Confidence 222211 1122222 2321 133333 345568999999986655 3778899999999999998
Q ss_pred CCEEEEEeCCCc-EEEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 639 SDCFLSVGEDFS-VALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 639 ~~~l~S~s~Dgs-V~lWdl~t~~~l~~~~gh--~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
|..+||+|..|+ |||||.++|..+++++.. ...|.+++|+|+..+|++++.- |+|+|+.++.-
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK--------gTlHiF~l~~~ 258 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK--------GTLHIFSLRDT 258 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC--------CeEEEEEeecC
Confidence 999999999998 599999999999998754 3468999999999999999888 99999998753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=102.35 Aligned_cols=112 Identities=14% Similarity=0.245 Sum_probs=77.0
Q ss_pred CCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEe-cccccceeEeeeccccccccCccccccccccc
Q 000473 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAML-CGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1471)
Q Consensus 13 ~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L-~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1471)
.++.++|..|-|...|..|+||+.|-+|.+||... ..++..+ .||...|-.-.| .
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-----~~~~l~f~SGH~~NvfQaKF-i------------------ 194 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS-----GSPKLSFESGHCNNVFQAKF-I------------------ 194 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhc-----cCcccccccccccchhhhhc-c------------------
Confidence 46778999999999999999999999999999984 2333333 388877755543 0
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEEcC-CCeEEEeeeCCCCCCCCcEEEEcCCCC--eEEEEcce
Q 000473 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGCC 155 (1471)
Q Consensus 92 ~~~~~~~s~d~~~LaSas~DG~I~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~--~ll~~G~~ 155 (1471)
.+.+...+++.+.||.+++=.+. +|.|.....+-+ |..|..+.++-++. .++++|.+
T Consensus 195 ------P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~-h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 195 ------PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAP-HEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred ------CCCCCcCceeccccCceeeeeeccccceecceeccc-ccCccceeeecCCCCCcccccccc
Confidence 14556779999999999988766 555554443332 23344544444332 45666665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00012 Score=88.79 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=74.3
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEecCC-CCCcEEE
Q 000473 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV----GEDFSVALASLETLRVERMFPGH-PNYPAKV 675 (1471)
Q Consensus 601 gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~----s~DgsV~lWdl~t~~~l~~~~gh-~~~V~~v 675 (1471)
..+.+||..+++.+.++....++ .-+..+|+ ++++... ....+|.++|.++.+.+..+... ...+..+
T Consensus 249 ~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPD------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-SSSS---EE--TT-------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred CccccchhhcCeEEEEEECCCCc-ceeecCCC------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 35668999999999999988887 77888998 7777766 45589999999999888877532 2358899
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 676 ~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
.|+++|+++..+..+ .++.|.|||.+|.++++.+.
T Consensus 322 ef~~dG~~v~vS~~~------~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWD------GNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--------TTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEEec------CCCEEEEEECCCcEEEEEEE
Confidence 999999988887766 22589999999999999887
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-06 Score=94.13 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=138.1
Q ss_pred eeecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcC--CcEEEEEecccccCCCCCCc
Q 000473 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS--GEIEVIQFDLFERHNSPGAS 554 (1471)
Q Consensus 477 ~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~D--G~I~V~~~~~l~~~d~~~~~ 554 (1471)
++.+...++.+.+|....+.........+..+ ..+.. +....-+|+.+++|+.. ..+.||+.. . ..+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~---~r~~~~~p~Iva~GGke~~n~lkiwdle--~----~~qi 186 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYD---VRQTDTDPYIVATGGKENINELKIWDLE--Q----SKQI 186 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-Cceee---eccCCCCCceEecCchhcccceeeeecc--c----ceee
Confidence 45555566677777766432110011111111 11222 22333456688889888 667773322 1 1112
Q ss_pred cccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc-eEEEEeccCCCEEEEEECC
Q 000473 555 LKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSP 631 (1471)
Q Consensus 555 ~d~~s~~~~~~l~gH~~--~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~-~l~~~~~H~~~V~~l~fsp 631 (1471)
|..+.-+. - ..+-.- .++.+.|-+.. ....|+++..-+.+++||...++ ++..|..-..+|+++...|
T Consensus 187 w~aKNvpn-D-~L~LrVPvW~tdi~Fl~g~-------~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 187 WSAKNVPN-D-RLGLRVPVWITDIRFLEGS-------PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eeccCCCC-c-cccceeeeeeccceecCCC-------CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 22111000 0 001111 24567776531 25789999999999999998765 6778877788999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~-~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
. ++.+.+|..-+.+..+|++.++.+.. +.|-.+.|+.+..+|.+++|++++-| ..|||+|++|.+
T Consensus 258 ~------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD--------RyvRIhD~ktrk 323 (412)
T KOG3881|consen 258 S------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD--------RYVRIHDIKTRK 323 (412)
T ss_pred C------CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc--------eeEEEeecccch
Confidence 9 99999999999999999999998766 88899999999999999999999999 999999999976
Q ss_pred EEEE
Q 000473 711 RERV 714 (1471)
Q Consensus 711 ~~~~ 714 (1471)
++..
T Consensus 324 ll~k 327 (412)
T KOG3881|consen 324 LLHK 327 (412)
T ss_pred hhhh
Confidence 6543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-06 Score=101.69 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=109.0
Q ss_pred CccccccccCCCCCCCccccccccCccEEEEEeeccccccCC--EEEEEEcC-C--cEEEEEecccccCCCCCCccccCC
Q 000473 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFS-G--EIEVIQFDLFERHNSPGASLKVNS 559 (1471)
Q Consensus 485 ~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~D-G--~I~V~~~~~l~~~d~~~~~~d~~s 559 (1471)
+.+.+||..... ...+..|...+.+.. |+|+ .+++.+.+ + .|.+ |+ ..+
T Consensus 184 ~~i~i~d~dg~~-----~~~lt~~~~~v~~p~------wSPDG~~la~~s~~~~~~~i~i--~d-------------l~t 237 (429)
T PRK01742 184 YEVRVADYDGFN-----QFIVNRSSQPLMSPA------WSPDGSKLAYVSFENKKSQLVV--HD-------------LRS 237 (429)
T ss_pred EEEEEECCCCCC-----ceEeccCCCccccce------EcCCCCEEEEEEecCCCcEEEE--Ee-------------CCC
Confidence 456667654321 233445566666666 5555 67776543 3 3555 44 333
Q ss_pred cc--eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE-ECCCcEEEE--ECCCCceEEEEeccCCCEEEEEECCCCC
Q 000473 560 HV--SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1471)
Q Consensus 560 ~~--~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SG-s~DgtI~lW--Dl~tg~~l~~~~~H~~~V~~l~fspd~~ 634 (1471)
++ .+..+.+|. ..++|+|| ++.|+.+ +.|+.+.+| |+.+++ ...+..+...+....|+|+
T Consensus 238 g~~~~l~~~~g~~---~~~~wSPD---------G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD-- 302 (429)
T PRK01742 238 GARKVVASFRGHN---GAPAFSPD---------GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD-- 302 (429)
T ss_pred CceEEEecCCCcc---CceeECCC---------CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC--
Confidence 32 233344543 46899998 7766655 578876655 666665 4556677778889999999
Q ss_pred CCCCCCEEEEEe-CCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 635 EHPWSDCFLSVG-EDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 635 ~~~~~~~l~S~s-~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
|+.++.++ .++...||+++.. .....+ ++.. ....|+|||++|+..+.+ + +.+||+.+|+..
T Consensus 303 ----G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--------~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 303 ----GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--------N-VVKQDLTSGSTE 366 (429)
T ss_pred ----CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--------C-EEEEECCCCCeE
Confidence 88766555 5788899987532 222333 3443 457899999999887765 4 666999998765
Q ss_pred E
Q 000473 713 R 713 (1471)
Q Consensus 713 ~ 713 (1471)
.
T Consensus 367 ~ 367 (429)
T PRK01742 367 V 367 (429)
T ss_pred E
Confidence 3
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.3e-06 Score=98.93 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=119.1
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec------cCC-----CEE
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH------HVA-----PVR 625 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~------H~~-----~V~ 625 (1471)
++.|..+..|.--.+.++++..++. ..+|+.|+.||.|-.||.++...+.++.. |.+ .|+
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~---------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEE---------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred ccccccccccccccccceeeeecCc---------cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 3445666666666789999999987 68999999999999999998776655542 333 499
Q ss_pred EEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCC--CCEEEEEEcCCCCCCCCCCEEE
Q 000473 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLF 702 (1471)
Q Consensus 626 ~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~-~gh~~~V~~v~~spd--g~~L~sgs~D~sg~~D~~gtV~ 702 (1471)
++.|+-+ |-.++.|..+|.|.|||+++.+++..- ++..-+|..+.|.+. ++.+++... ..++
T Consensus 233 al~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk---------~~~k 297 (703)
T KOG2321|consen 233 ALKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK---------RILK 297 (703)
T ss_pred EEEecCC------ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch---------HHhh
Confidence 9999988 889999999999999999998886543 333458899999776 445554332 6899
Q ss_pred EEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccc
Q 000473 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1471)
Q Consensus 703 VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~ 747 (1471)
|||-.+|+....+..... +..+| ....+|.++.++...
T Consensus 298 iWd~~~Gk~~asiEpt~~---lND~C----~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 298 IWDECTGKPMASIEPTSD---LNDFC----FVPGSGMFFTANESS 335 (703)
T ss_pred hcccccCCceeeccccCC---cCcee----eecCCceEEEecCCC
Confidence 999999998887775543 33455 223466666655543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=91.71 Aligned_cols=194 Identities=17% Similarity=0.122 Sum_probs=135.6
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+...+.+.++++|-..+....-..+ ...-+..+++..+.++.. +|++|..+|++.-+... -|.
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~----~L~vg~~ngtvtefs~s-----------edf 101 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR----RLYVGQDNGTVTEFALS-----------EDF 101 (404)
T ss_pred eEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce----EEEEEEecceEEEEEhh-----------hhh
Confidence 3445667788888766543211111 122345677777666665 89999999998874332 122
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCC---------------------------
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--------------------------- 610 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t--------------------------- 610 (1471)
+.....+....|..+|..+.|+-. .+++++.+.|..+..--.+.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLT---------HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCC---------ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 223344555678888888877654 46666666665443222221
Q ss_pred --------------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEE
Q 000473 611 --------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKV 675 (1471)
Q Consensus 611 --------------g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~-l~~~~gh~~~V~~v 675 (1471)
-.++.++.+|.+++.++.|.|. ...+.||..|..|.+||+-.++- ...+.+|...|..+
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 1245678899999999999998 78999999999999999975543 36778999999999
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 676 ~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
..-+.-+.|++++.| |.|-+||++....
T Consensus 247 ~~~~~t~~l~S~~ed--------g~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 247 SYAQHTRQLISCGED--------GGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhheeeeeccCC--------CeEEEEeccceee
Confidence 888888899998888 9999999976543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.3e-05 Score=88.78 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred cEEEEEEecCCCCcccCcCCCEE-EEEECCCcEEEEECCCCceEE-------EEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L-~SGs~DgtI~lWDl~tg~~l~-------~~~~H~~~V~~l~fspd~~~~~~~~~l~ 643 (1471)
...+++++|+ ++++ ++...++.|.+||+.+...+. .... ......++|+|+ +++++
T Consensus 127 ~~~~~~~~p~---------g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~ly 190 (330)
T PRK11028 127 GCHSANIDPD---------NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAY 190 (330)
T ss_pred cccEeEeCCC---------CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC------CCEEE
Confidence 4567889997 5655 566677999999998633221 1111 234578999999 88887
Q ss_pred EEeC-CCcEEEEECCC--C--cEEEEecCC------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 644 SVGE-DFSVALASLET--L--RVERMFPGH------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 644 S~s~-DgsV~lWdl~t--~--~~l~~~~gh------~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
++.. +++|.+|+++. + +.+..+..+ ......+.++|++++|++++.. +++|.+|++.+.
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 7776 99999999973 3 334444322 1234468999999999998663 279999999653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=90.10 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=87.0
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC----------CCcEEEEECCCCcE
Q 000473 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRV 661 (1471)
Q Consensus 592 ~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~----------DgsV~lWdl~t~~~ 661 (1471)
.+++.|...|+|-+.|+.++.....|..|.+.|.++.|-.. ..|+|.+. -+.+.+-|+++|..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-------sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-------SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-------eeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 57889999999999999999999999999999999999765 23444332 34567889999865
Q ss_pred E--EEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 662 E--RMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 662 l--~~~~g-h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
. +.+++ ...+|..+..+..++||+..-.| .-+.+||+++-++++.+
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~--------~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRR--------EPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecc--------cchHHHhhccchHHHHH
Confidence 3 32333 35689999999999999999999 89999999887665443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=88.16 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=107.9
Q ss_pred cCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCc-----cEEEEEEecCC
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG-----AVLCLAAHRMV 582 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~-----~V~~la~spd~ 582 (1471)
....++++.+.+... .+++|+.+|.+.. ||..... .+.+.........|.+ .|+++.|..+
T Consensus 174 ~~~~lN~v~in~~hg----Lla~Gt~~g~VEf--wDpR~ks-------rv~~l~~~~~v~s~pg~~~~~svTal~F~d~- 239 (703)
T KOG2321|consen 174 DSGELNVVSINEEHG----LLACGTEDGVVEF--WDPRDKS-------RVGTLDAASSVNSHPGGDAAPSVTALKFRDD- 239 (703)
T ss_pred ccccceeeeecCccc----eEEecccCceEEE--ecchhhh-------hheeeecccccCCCccccccCcceEEEecCC-
Confidence 345677776666666 7999999999999 5421100 0000001111223333 4999999865
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~-~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~ 661 (1471)
+-.++.|..+|.|.++|+++.+++..-. +..-+|..+.|.+.. .++.++|. ....++|||-.+|+.
T Consensus 240 --------gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~----~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 240 --------GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD----QQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred --------ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC----CCceEEec-chHHhhhcccccCCc
Confidence 7899999999999999999988775432 234578888887751 13355554 457889999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000473 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg~~L~sgs~D 690 (1471)
...+.. ...++.+++-|++.+++++-.+
T Consensus 307 ~asiEp-t~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 307 MASIEP-TSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred eeeccc-cCCcCceeeecCCceEEEecCC
Confidence 877763 4459999999999999988776
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=100.39 Aligned_cols=232 Identities=18% Similarity=0.095 Sum_probs=146.8
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+++++.+..+-+||.....+. .....+|...|....+++...- ..++..+.||.+++.... ..+
T Consensus 157 l~SgSDD~~vv~WdW~~~~~~---l~f~SGH~~NvfQaKFiP~s~d--~ti~~~s~dgqvr~s~i~--~t~--------- 220 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSPK---LSFESGHCNNVFQAKFIPFSGD--RTIVTSSRDGQVRVSEIL--ETG--------- 220 (559)
T ss_pred eeccCccceEEeehhhccCcc---cccccccccchhhhhccCCCCC--cCceeccccCceeeeeec--ccc---------
Confidence 556667788889998775442 2223677777766553332210 168889999999984432 110
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe---ccCC---CEEEEEECC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVA---PVRQIILSP 631 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~---~H~~---~V~~l~fsp 631 (1471)
--+....+..|.+.|.-++.-|+ ....|.|++.|+.+.-.|++++.+...+. .+.. ....++..|
T Consensus 221 -~~e~t~rl~~h~g~vhklav~p~--------sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 221 -YVENTKRLAPHEGPVHKLAVEPD--------SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred -ceecceecccccCccceeeecCC--------CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 01223456789999999999997 26789999999999999998765433322 2222 345666666
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCC----------------------------------------------------
Q 000473 632 PQTEHPWSDCFLSVGEDFSVALASLETL---------------------------------------------------- 659 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~DgsV~lWdl~t~---------------------------------------------------- 659 (1471)
.+ .+.|++++.|-.+++||.+.-
T Consensus 292 ~n-----t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 292 RN-----TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred CC-----ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 53 345666666666666655321
Q ss_pred --------------cEEE-EecCCCC--CcEEEEE-cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000473 660 --------------RVER-MFPGHPN--YPAKVVW-DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1471)
Q Consensus 660 --------------~~l~-~~~gh~~--~V~~v~~-spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~ 721 (1471)
..+. .+.||.. .|..|-| -|...|+++|+.= |.|.||+-.+++.++.+.|...-
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC--------GhIFiW~K~t~eii~~MegDr~V 438 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC--------GHIFIWDKKTGEIIRFMEGDRHV 438 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc--------ceEEEEecchhHHHHHhhcccce
Confidence 1111 1445543 2444443 5566677766654 99999999999999999998875
Q ss_pred ceeeeeeeccccccccceEEcCCccccccceeeccCCceEeec
Q 000473 722 SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 722 v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~ 764 (1471)
|-++.-.|.+.. .+++.+ |..||+|.
T Consensus 439 VNCLEpHP~~Pv------------LAsSGi-----d~DVKIWT 464 (559)
T KOG1334|consen 439 VNCLEPHPHLPV------------LASSGI-----DHDVKIWT 464 (559)
T ss_pred EeccCCCCCCch------------hhccCC-----ccceeeec
Confidence 556555543322 223333 88899996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-05 Score=92.96 Aligned_cols=168 Identities=12% Similarity=0.067 Sum_probs=108.1
Q ss_pred ccCC--EEEEE-EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC
Q 000473 523 YAPY--AIVYG-FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1471)
Q Consensus 523 f~P~--~lv~G-s~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~ 599 (1471)
|+|+ .++.. ..+|...|+.|+ .++++.. .+..+...+....|+|| ++.|+..+.
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d-------------~~tg~~~-~lt~~~~~~~~~~wSPD---------G~~I~f~s~ 306 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMD-------------LASGQIR-QVTDGRSNNTEPTWFPD---------SQNLAYTSD 306 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEE-------------CCCCCEE-EccCCCCCcCceEECCC---------CCEEEEEeC
Confidence 6665 56554 456665554454 3344443 34444556788999998 777766554
Q ss_pred -CCcEEE--EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcE
Q 000473 600 -DCSIRI--WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 600 -DgtI~l--WDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D---gsV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
++...+ +|+.+++. ..+..+........|+|+ |+.++..+.+ ..|.+||+.+++....... ....
T Consensus 307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD------G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~ 377 (429)
T PRK03629 307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDE 377 (429)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC------CCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCC
Confidence 444444 57766654 344445555677889999 8888776654 4588999998875433322 2244
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~ 728 (1471)
...|+|||++|+.++.+ + +...+++|++ +|...+.+.+|.+.+....|.
T Consensus 378 ~p~~SpDG~~i~~~s~~--~---~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQ--G---MGSVLNLVST-DGRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred CceECCCCCEEEEEEcC--C---CceEEEEEEC-CCCCeEECccCCCCcCCcccC
Confidence 67899999999999887 1 1145888888 566677788877655444343
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=87.84 Aligned_cols=148 Identities=14% Similarity=0.039 Sum_probs=108.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++++-.+|.+.+..... .. -+..+..++|.-..+...|+.. ..+++.+||.|+.+..|
T Consensus 135 ~i~vs~s~G~~~~v~~t~----------~~---le~vq~wk~He~E~Wta~f~~~--------~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETE----------MV---LEKVQTWKVHEFEAWTAKFSDK--------EPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEEcCCCcEEEEecce----------ee---eeecccccccceeeeeeecccC--------CCceEEecCCCceEEEE
Confidence 577777888888644331 01 1345678899999999999765 37899999999999999
Q ss_pred ECC-CCceEEE-EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCC-
Q 000473 607 DLG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRG- 682 (1471)
Q Consensus 607 Dl~-tg~~l~~-~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t-~~~l~~~~gh~~~V~~v~~spdg~- 682 (1471)
|++ .++.+.. -+.|...|.++.-+|.. +.++++|+.|-.|++||.+. ++++..-.- .+.|+.++++|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFH 267 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhh
Confidence 999 4555543 56789999999988763 77999999999999999984 566654332 36799999999643
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
.++.+|.- .-.+|-++..+
T Consensus 268 ~lL~~CMh--------~G~ki~~~~~~ 286 (339)
T KOG0280|consen 268 RLLAACMH--------NGAKILDSSDK 286 (339)
T ss_pred HHHHHHHh--------cCceEEEeccc
Confidence 34445554 34667666554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-05 Score=86.39 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=135.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC--CcEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIR 604 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D--gtI~ 604 (1471)
.|+++-.+|.+.++.-. ..|..+. ....+..| ..+..+.-++. ....+++||.. ..+.
T Consensus 117 ~Litc~~sG~l~~~~~k----------~~d~hss-~l~~la~g-~g~~~~r~~~~--------~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDK----------SGDLHSS-KLIKLATG-PGLYDVRQTDT--------DPYIVATGGKENINELK 176 (412)
T ss_pred EEEEEecCCcEEEEecc----------CCccccc-cceeeecC-CceeeeccCCC--------CCceEecCchhccccee
Confidence 68888999999994321 0111121 22233333 34555554543 26788889999 8999
Q ss_pred EEECCCCceEEEEeccC---------CC--EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCc
Q 000473 605 IWDLGSGNLITVMHHHV---------AP--VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYP 672 (1471)
Q Consensus 605 lWDl~tg~~l~~~~~H~---------~~--V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V 672 (1471)
+||++..+.+ |.+.. -| ++.+.|-|.. ....|+++..-+.|++||.+.+ +++..|.--..++
T Consensus 177 iwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~----~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 177 IWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGS----PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI 250 (412)
T ss_pred eeecccceee--eeccCCCCccccceeeeeeccceecCCC----CCceEEEEecceeEEEecCcccCcceeEeccccCcc
Confidence 9999987443 33321 12 4567776651 1468999999999999999865 5788888888899
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-EeCCCCCceeeeeeeccccccccceEEcCCccccccc
Q 000473 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1471)
Q Consensus 673 ~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~-l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1471)
+++...|.++++++|..- |.+..+|++++.+..+ +.|-++.+-.++..+. +....+..+
T Consensus 251 s~~~l~p~gn~Iy~gn~~--------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------------~~~las~GL 310 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTK--------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------------HPVLASCGL 310 (412)
T ss_pred eeeeecCCCcEEEEeccc--------chhheecccCceeeccccCCccCCcceEEEcCC------------CceEEeecc
Confidence 999999999999999887 9999999999999877 8888887777765531 224444555
Q ss_pred eeeccCCceEeecccc
Q 000473 752 LPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 752 ~~~~~D~tir~w~l~~ 767 (1471)
|.-+|++++++
T Consensus 311 -----DRyvRIhD~kt 321 (412)
T KOG3881|consen 311 -----DRYVRIHDIKT 321 (412)
T ss_pred -----ceeEEEeeccc
Confidence 99999988754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=90.60 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=102.1
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE-
Q 000473 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1471)
Q Consensus 523 f~P~--~lv-~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs- 598 (1471)
|+|+ .++ +.+.+|.-.|+.|+ ..+++ ...+..|.+......|+|| ++.|+..+
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d-------------~~~g~-~~~lt~~~~~~~~~~~spD---------G~~l~f~sd 311 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMD-------------LGSRQ-LTRLTNHFGIDTEPTWAPD---------GKSIYFTSD 311 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEE-------------CCCCC-eEECccCCCCccceEECCC---------CCEEEEEEC
Confidence 6665 454 44566764444354 33333 3445566666678899998 67666555
Q ss_pred CCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000473 599 MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 599 ~Dgt--I~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dg---sV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
.++. |.++|+.+++.. .+..+........|+|+ |+.++..+.++ .|.+||+.+++..... +.....
T Consensus 312 ~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpD------G~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~ 382 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPD------GKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDE 382 (433)
T ss_pred CCCCceEEEEECCCCCeE-EeecCCCCccCEEECCC------CCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCC
Confidence 4554 666777777643 33333444557899999 88887765433 6999999888765333 222455
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~ 720 (1471)
...|+|||++|+..+.+ .+.+.|++++.. |...+.+..+.+
T Consensus 383 ~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~-g~~~~~l~~~~g 423 (433)
T PRK04922 383 SPSFAPNGSMVLYATRE-----GGRGVLAAVSTD-GRVRQRLVSADG 423 (433)
T ss_pred CceECCCCCEEEEEEec-----CCceEEEEEECC-CCceEEcccCCC
Confidence 67999999999887765 122679999985 445566654443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=87.73 Aligned_cols=116 Identities=13% Similarity=0.203 Sum_probs=79.7
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEEC-CCcEEEEECCC--Cc--eEEEEeccC------CCEEEEEECCCCCCCCCCCE
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS--GN--LITVMHHHV------APVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L~SGs~-DgtI~lWDl~t--g~--~l~~~~~H~------~~V~~l~fspd~~~~~~~~~ 641 (1471)
...++|+|+ ++++++... +++|.+||+.. ++ .+..+..+. .....+.++|+ +++
T Consensus 177 p~~~~~~pd---------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd------g~~ 241 (330)
T PRK11028 177 PRHMVFHPN---------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD------GRH 241 (330)
T ss_pred CceEEECCC---------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC------CCE
Confidence 567899997 788777665 99999999973 33 233333221 12235889998 887
Q ss_pred EEEEe-CCCcEEEEECCCCc----EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC--CCeE
Q 000473 642 FLSVG-EDFSVALASLETLR----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK--TGAR 711 (1471)
Q Consensus 642 l~S~s-~DgsV~lWdl~t~~----~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~--tg~~ 711 (1471)
++++. .+++|.+|+++... .+..... ...+..+.|+|+|++|++++.. +++|.+|++. +|.+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~-------~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK-------SHHISVYEIDGETGLL 310 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc-------CCcEEEEEEcCCCCcE
Confidence 77775 47899999996432 2222222 1245689999999999998863 2899999874 5554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=81.93 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=74.4
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEECC--CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~SGs~D--gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dg 649 (1471)
.+.-++|++| ..+++|-... ..+-+||++..++...+ .+..+|....|.|. ...++.+....
T Consensus 320 g~g~lafs~D---------s~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~------~prL~vctg~s 383 (447)
T KOG4497|consen 320 GAGKLAFSCD---------STYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPG------RPRLVVCTGKS 383 (447)
T ss_pred ccceeeecCC---------ceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCC------CceEEEEcCCc
Confidence 4677889987 7888887433 47889999876654433 46678999999997 34444444445
Q ss_pred cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000473 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 650 sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D 690 (1471)
.+.+|......++. .++....|.+++|.-+|.+++-.+.|
T Consensus 384 rLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred eEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence 58899887655543 35555789999999999999888877
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=90.07 Aligned_cols=101 Identities=27% Similarity=0.445 Sum_probs=81.2
Q ss_pred EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC
Q 000473 530 YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1471)
Q Consensus 530 ~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~ 609 (1471)
.|-..|.|.+.+.. .....++.++.+|.+.++|+.|.+. ..+|.||..|..|.+||+.
T Consensus 170 vGd~~gqvt~lr~~-------------~~~~~~i~~~~~h~~~~~~l~Wd~~---------~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 170 VGDHSGQITMLKLE-------------QNGCQLITTFNGHTGEVTCLKWDPG---------QRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ecccccceEEEEEe-------------ecCCceEEEEcCcccceEEEEEcCC---------CcEEEeccccCceEEEecc
Confidence 45556677764432 2234678889999999999999986 7899999999999999997
Q ss_pred CCc-eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000473 610 SGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 610 tg~-~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t 658 (1471)
-.+ ....+.+|...|..+..-+. -+.+.+++.|+.|.+|+++.
T Consensus 228 g~~g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence 544 34677889999999887776 67899999999999999863
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=89.92 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=97.1
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC---CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~---DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~ 637 (1471)
...+.+..|...+.+..|+|| ++.|+..+. +..|.+||+.+|+. ..+..+.+.+....|+|+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpD---------G~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPD----- 256 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPN---------RQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPD----- 256 (435)
T ss_pred CCcEEEecCCCCeEeeEECCC---------CCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCC-----
Confidence 344567788889999999998 777776653 46899999998875 345566777888999999
Q ss_pred CCCEEE-EEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 638 WSDCFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 638 ~~~~l~-S~s~Dgs--V~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
|+.++ +.+.|+. |.+||+.+++.. .+..+........|+|||++|+..+.. ++...|++||+.+++..+
T Consensus 257 -G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~-----~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 257 -GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR-----SGSPQLYVMNADGSNPRR 328 (435)
T ss_pred -CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC-----CCCCeEEEEECCCCCeEE
Confidence 77654 6666665 677798887764 455566667789999999999887643 122579999988776543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00016 Score=81.69 Aligned_cols=100 Identities=20% Similarity=0.380 Sum_probs=81.9
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCc-EEEEECC
Q 000473 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLG 609 (1471)
Q Consensus 531 Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dgt-I~lWDl~ 609 (1471)
|..-|.|+|..+.. +.. + +-..+..|...|.|++...+ |.+++|+|..|| ||+||..
T Consensus 155 g~k~GqvQi~dL~~-----------~~~-~-~p~~I~AH~s~Iacv~Ln~~---------Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 155 GFKTGQVQIVDLAS-----------TKP-N-APSIINAHDSDIACVALNLQ---------GTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCccceEEEEEhhh-----------cCc-C-CceEEEcccCceeEEEEcCC---------ccEEEEeccCcEEEEEEEcC
Confidence 55678999965541 111 1 23567899999999999886 899999999996 6799999
Q ss_pred CCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000473 610 SGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 610 tg~~l~~~~~--H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t 658 (1471)
+|+++..++- ....|.+++|+|+ ..++|..|+-|++.++.++.
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeec
Confidence 9999988864 3357999999999 88999999999999999875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=90.33 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=104.3
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE-
Q 000473 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1471)
Q Consensus 523 f~P~--~lv-~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs- 598 (1471)
|+|+ .++ +...+|...|+.++ ..++. .+.+..|.+.+....|+|| ++.|+..+
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d-------------~~~~~-~~~lt~~~~~~~~~~wSpD---------G~~l~f~s~ 303 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVN-------------ADGSG-LRRLTQSSGIDTEPFFSPD---------GRSIYFTSD 303 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEE-------------CCCCC-cEECCCCCCCCcCeEEcCC---------CCEEEEEec
Confidence 6665 565 45678888886555 22222 3445556666677889998 67666444
Q ss_pred CCCcEEEEEC--CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000473 599 MDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 599 ~DgtI~lWDl--~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dg---sV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
.++...+|.+ .+++. ..+..+........|+|+ |+.++..+.++ .|.+||+.+++......+ ....
T Consensus 304 ~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpD------G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~ 374 (427)
T PRK02889 304 RGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPD------GKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDE 374 (427)
T ss_pred CCCCcEEEEEECCCCce-EEEecCCCCcCceEECCC------CCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCcc
Confidence 4566677755 44443 222223334456789999 89888777654 699999998876544332 2346
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCc
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v 722 (1471)
...|+|||++|+.++.+ .+...+++-+. +|...+.+..+.+.+
T Consensus 375 ~p~~spdg~~l~~~~~~-----~g~~~l~~~~~-~g~~~~~l~~~~g~~ 417 (427)
T PRK02889 375 SPSFAPNGRYILYATQQ-----GGRSVLAAVSS-DGRIKQRLSVQGGDV 417 (427)
T ss_pred CceECCCCCEEEEEEec-----CCCEEEEEEEC-CCCceEEeecCCCCC
Confidence 78999999999988876 11245777777 566666666555433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.5e-06 Score=110.78 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=130.7
Q ss_pred eecccccCccccccccCCCCCCCccccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000473 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1471)
Q Consensus 478 l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~ 557 (1471)
+.+.+.++.++.|......+.- .....+. .+|+.+.+..+.. ....+-.||.+.+ |+ .
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~--~~rt~g~-s~vtr~~f~~qGn----k~~i~d~dg~l~l--~q-------------~ 2280 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVV--CFRTAGN-SRVTRSRFNHQGN----KFGIVDGDGDLSL--WQ-------------A 2280 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEE--EeeccCc-chhhhhhhcccCC----ceeeeccCCceee--cc-------------c
Confidence 4566778899999876643311 1111222 5677766444443 6666777888887 54 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE---ECCCcEEEEECCCC---ceEEEEeccCCCEEEEEECC
Q 000473 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---SMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSP 631 (1471)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SG---s~DgtI~lWDl~tg---~~l~~~~~H~~~V~~l~fsp 631 (1471)
+.++....+.|......+.|- +..++++ +.++.+++||..-. .+++ ..|.+.++++++-|
T Consensus 2281 -~pk~~~s~qchnk~~~Df~Fi-----------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 -SPKPYTSWQCHNKALSDFRFI-----------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred -CCcceeccccCCccccceeee-----------ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 135666677888888888875 3556655 36789999997532 2445 78999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
. .+.|+|||.+|.|+|||++..+.++.++. ++ ...++++|+.. |.++||++..-.+
T Consensus 2347 ~------~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~--------g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2347 K------HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE--------GNIKIWRLSEFGL 2402 (2439)
T ss_pred c------ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc--------cceEEEEccccch
Confidence 8 88999999999999999998887776653 55 67899998887 9999999988877
Q ss_pred EEEEeC
Q 000473 712 ERVLRG 717 (1471)
Q Consensus 712 ~~~l~g 717 (1471)
++++.+
T Consensus 2403 l~~~p~ 2408 (2439)
T KOG1064|consen 2403 LHTFPS 2408 (2439)
T ss_pred hhcCch
Confidence 777654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00015 Score=90.20 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=86.6
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCC-EEEEEECCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000473 566 FLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 566 l~gH~~~V~~la~spd~~~~~~~~~~~-~L~SGs~Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
+..+.+...+..|+|| ++ ++++.+.++ .|.+||+.+++. ..+..+.+......|+|+ |+.+
T Consensus 243 l~~~~g~~~~~~~SpD---------G~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l 306 (433)
T PRK04922 243 VASFRGINGAPSFSPD---------GRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSI 306 (433)
T ss_pred eccCCCCccCceECCC---------CCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEE
Confidence 3344455567899998 55 445666666 599999998875 445566666678899999 8888
Q ss_pred EEEeC-CCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 643 LSVGE-DFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 643 ~S~s~-Dgs--V~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
+.++. ++. |.++|+.+++..+.. .+.......+|+|||++|+..+.+ ++...|++||+.+++..
T Consensus 307 ~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 77664 444 666677777654332 233445578999999999887654 11247999999888754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-05 Score=89.42 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=87.4
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCC
Q 000473 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPN 670 (1471)
Q Consensus 592 ~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~-~gh~~ 670 (1471)
......+.+..+.+|....+.+. .+-+|...++.|+++|| ++.++++..|..|++-....--.+..| .||..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 34445566778888887765543 45599999999999999 899999999999999888765555544 57999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
.|..++.-++. .|++|+.| ++|++||+++|++++++.
T Consensus 196 FVS~isl~~~~-~LlS~sGD--------~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNY-LLLSGSGD--------KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCc-eeeecCCC--------CcEEEEecccCCcccccc
Confidence 99999998764 47777777 999999999999886654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=87.96 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=109.0
Q ss_pred ccccCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 505 FVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 505 ~~~h~~~Vts~~~is~~~f~P~~lv~Gs~-DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
+..|...+.+..+.++.. .|++.+. +|.-.|+.|+ ..+++. +.+..+.+.+.+.+|+||
T Consensus 197 lt~~~~~v~~p~wSpDG~----~lay~s~~~g~~~i~~~d-------------l~~g~~-~~l~~~~g~~~~~~~SPD-- 256 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ----EITYMSYANGRPRVYLLD-------------LETGQR-ELVGNFPGMTFAPRFSPD-- 256 (435)
T ss_pred EecCCCCeEeeEECCCCC----EEEEEEecCCCCEEEEEE-------------CCCCcE-EEeecCCCcccCcEECCC--
Confidence 445556677766333333 6776653 3333333344 334433 345566777888999998
Q ss_pred CcccCcCCCE-EEEEECCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-C--CcEEEEECC
Q 000473 584 TAKGWSFNEV-LVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALASLE 657 (1471)
Q Consensus 584 ~~~~~~~~~~-L~SGs~Dgt--I~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~-D--gsV~lWdl~ 657 (1471)
++. +++.+.++. |.+||+.+++. ..+..+.+......|+|+ |+.++..+. + ..|.+||+.
T Consensus 257 -------G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 257 -------GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred -------CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEEECC
Confidence 554 557777765 77789988765 456667666778899999 888877664 3 357888988
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 658 t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
+++..+.. .+...+....|+|+|++|+....+ .++..|++||..++.
T Consensus 323 g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-----~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 323 GSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-----GGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-----CCceEEEEEECCCCc
Confidence 76654433 334556778999999999887754 112579999986654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=91.68 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=103.8
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC-----ceEEEEeccCCCEEEEEECC-CCCCCCCCCEE
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSP-PQTEHPWSDCF 642 (1471)
Q Consensus 569 H~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg-----~~l~~~~~H~~~V~~l~fsp-d~~~~~~~~~l 642 (1471)
-.+.|.++.|+.. +.++..|...|.|...|++.+ .+.+.+ .|...|+++..-. + ++++
T Consensus 251 sksDVfAlQf~~s---------~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGS---------DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKL 314 (425)
T ss_pred cchhHHHHHhccc---------CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc------cceE
Confidence 4567888999865 799999999999999999864 345555 5888899987655 4 7899
Q ss_pred EEEeCCCcEEEEECCCCcE---EEEecCCCCCc--EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 643 LSVGEDFSVALASLETLRV---ERMFPGHPNYP--AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 643 ~S~s~DgsV~lWdl~t~~~---l~~~~gh~~~V--~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
++.+.+|+|++||++--++ ++++.||...- .-+-..+.+..++++++| ...|||.++.|+++.++.-
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD--------cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD--------CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe--------eEEEEEecccCceeeccCC
Confidence 9999999999999987777 99999996633 334557788899999998 9999999999999988764
Q ss_pred C
Q 000473 718 T 718 (1471)
Q Consensus 718 H 718 (1471)
.
T Consensus 387 ~ 387 (425)
T KOG2695|consen 387 P 387 (425)
T ss_pred C
Confidence 3
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=89.33 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=102.4
Q ss_pred ccCccEEEEEeeccccccCC--EEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 507 HKEKIVSSSMVISESFYAPY--AIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~--~lv~Gs~-DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
.+...+.+.. |+|+ .+++.+. ++.-.|+.|+ +.+++.. .+....+.+.+.+|+||
T Consensus 193 ~~~~~v~~p~------wSPDG~~la~~s~~~~~~~I~~~d-------------l~~g~~~-~l~~~~g~~~~~~~SPD-- 250 (427)
T PRK02889 193 SSPEPIISPA------WSPDGTKLAYVSFESKKPVVYVHD-------------LATGRRR-VVANFKGSNSAPAWSPD-- 250 (427)
T ss_pred cCCCCcccce------EcCCCCEEEEEEccCCCcEEEEEE-------------CCCCCEE-EeecCCCCccceEECCC--
Confidence 4445565555 5554 6766654 3333343344 3344432 33334455678899998
Q ss_pred CcccCcCCCEE-EEEECCCcEEEEEC--CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCcEEEEEC--C
Q 000473 584 TAKGWSFNEVL-VSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASL--E 657 (1471)
Q Consensus 584 ~~~~~~~~~~L-~SGs~DgtI~lWDl--~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~-DgsV~lWdl--~ 657 (1471)
++.| ++.+.|+...+|.+ .++. ...+..+.+.+....|+|| |+.++.++. ++...+|.+ .
T Consensus 251 -------G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 251 -------GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred -------CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECC
Confidence 6655 57788887776654 4444 5566666666777889999 887776654 466677755 4
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 658 t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
+++..+.. .+........|+|||++|+..+.+ .+...|++||+.+++...
T Consensus 317 ~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~-----~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 317 GGAAQRVT-FTGSYNTSPRISPDGKLLAYISRV-----GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CCceEEEe-cCCCCcCceEECCCCCEEEEEEcc-----CCcEEEEEEECCCCCeEE
Confidence 55443322 222334568999999999877765 111479999999887543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0068 Score=73.48 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=91.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCE-EEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1471)
Q Consensus 569 H~~~V~~la~spd~~~~~~~~~~~~-L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~ 647 (1471)
..++|.++.|+|. + .++ ++-|-+=-.+.++|++ ++.+..| -.++-.++.|+|. |++++-+|-
T Consensus 269 k~GPVhdv~W~~s-----~---~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGF 331 (566)
T KOG2315|consen 269 KEGPVHDVTWSPS-----G---REFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGF 331 (566)
T ss_pred CCCCceEEEECCC-----C---CEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeec
Confidence 4689999999997 1 333 3445677799999985 6666555 4677899999998 998888775
Q ss_pred C---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000473 648 D---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1471)
Q Consensus 648 D---gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~ 714 (1471)
+ |.|-+||+.+.+++..+..- .-+-..|+|||.|++|+... =-=..|+.++||+. +|.++..
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa--PRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA--PRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc--ccEEecCCeEEEEe-cCceeeh
Confidence 4 89999999998888777543 34568999999999998752 00001167999997 6766554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0004 Score=86.22 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=84.1
Q ss_pred cEEEEEEecCCCCcccCcCCCEEE-EEECCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~-SGs~Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D 648 (1471)
.+..+.|+|| ++.|+ +.+.++ .|.+||+.+++... +..+...+....|+|+ |+.|+.++.+
T Consensus 244 ~~~~~~~SPD---------G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD------G~~I~f~s~~ 307 (429)
T PRK03629 244 HNGAPAFSPD---------GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD------SQNLAYTSDQ 307 (429)
T ss_pred CcCCeEECCC---------CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC------CCEEEEEeCC
Confidence 3456899998 66555 445555 58899999887644 4444556788999999 8888777654
Q ss_pred -CcEEEE--ECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 649 -FSVALA--SLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 649 -gsV~lW--dl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
+...|| |+.+++.. .+..+........|+|||++|+..+.+ ++...|++||+.+++. +.+.
T Consensus 308 ~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~-~~Lt 371 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGV-QVLT 371 (429)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCe-EEeC
Confidence 444555 67766553 333344456678999999999887665 1225799999998874 3444
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=94.66 Aligned_cols=179 Identities=12% Similarity=0.145 Sum_probs=129.9
Q ss_pred ccccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000473 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1471)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~ 582 (1471)
..+.+|...|.++..+.... .+++++.|.++++|... ..+| ...+..+..++..|+.+|..+.|-.+
T Consensus 729 ~nf~GH~~~iRai~AidNEN----SFiSASkDKTVKLWSik--~EgD------~~~tsaCQfTY~aHkk~i~~igfL~~- 795 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNEN----SFISASKDKTVKLWSIK--PEGD------EIGTSACQFTYQAHKKPIHDIGFLAD- 795 (1034)
T ss_pred ecccCcHHHhHHHHhccccc----ceeeccCCceEEEEEec--cccC------ccccceeeeEhhhccCcccceeeeec-
Confidence 55788999998876665554 68999999999995543 2221 23455788899999999999999876
Q ss_pred CCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEE-EEeCCCcEEEEECCCC
Q 000473 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFL-SVGEDFSVALASLETL 659 (1471)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~--H~~~V~~l~fspd~~~~~~~~~l~-S~s~DgsV~lWdl~t~ 659 (1471)
.+.++| .|+.|.+||..-|+++..+.. ..+.+.-+..-|+. +...+. -++...+|+++|-+.+
T Consensus 796 --------lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv----~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 796 --------LRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV----DRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred --------cceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccC----cchheeeeccchhhheeeecccc
Confidence 566665 589999999998888765432 12233333333331 133444 4477899999999987
Q ss_pred cEEEEe-----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 660 RVERMF-----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 660 ~~l~~~-----~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
+-...+ ++...-+.+++..|.|++++++-.+ |+|.+-|.++|+.+...+
T Consensus 862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn--------Gci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN--------GCIAILDARNGKVINSWR 915 (1034)
T ss_pred cceeeEEeccCCCCchheeEEEeccCcchhhHHhcC--------CcEEEEecCCCceeccCC
Confidence 654433 4555678999999999999998887 999999999998776544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=62.29 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=36.0
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEE
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWD 607 (1471)
++++++.+|.+.|++++|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~---------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD---------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT---------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc---------cccceeeCCCCEEEEEC
Confidence 578899999999999999997 89999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=62.06 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 659 ~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+++++.+.+|...|++++|+|++.+|++++.| ++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D--------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD--------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT--------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC--------CEEEEEC
Confidence 46789999999999999999999999999999 9999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=101.94 Aligned_cols=147 Identities=10% Similarity=0.135 Sum_probs=116.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE--ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF--LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l--~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~ 604 (1471)
.-++|+.||.+++|.|. .++.+.++ .|. ..|+.+.|+.. |+.+.-+..||.+.
T Consensus 2222 ~Yltgs~dgsv~~~~w~---------------~~~~v~~~rt~g~-s~vtr~~f~~q---------Gnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWG---------------HGQQVVCFRTAGN-SRVTRSRFNHQ---------GNKFGIVDGDGDLS 2276 (2439)
T ss_pred eEEecCCCceEEEEecc---------------CCCeEEEeeccCc-chhhhhhhccc---------CCceeeeccCCcee
Confidence 67899999999998876 12333333 243 78999999876 78888889999999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCcEEEEECCC---CcEEEEecCCCCCcEEEEEc
Q 000473 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET---LRVERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 605 lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s---~DgsV~lWdl~t---~~~l~~~~gh~~~V~~v~~s 678 (1471)
+|.+. .++....+.|......+.|-.. .+++.+ .++.+.+||..- ..+++ ..|.+.++++++-
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~s--------~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIGS--------LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA 2345 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeeeh--------hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc
Confidence 99987 6677788889988888888543 566654 578999999742 23444 5689999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
|....|++|+.+ |.|++||++..++++++..
T Consensus 2346 P~~qllisggr~--------G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2346 PKHQLLISGGRK--------GEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred CcceEEEecCCc--------CcEEEeehHHHHHHHHhhh
Confidence 999999999999 9999999999888776654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=80.52 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=89.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE-CCCcEEEEE--CCC-CceEEEEeccCCCEEEEEECCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWD--LGS-GNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs-~DgtI~lWD--l~t-g~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
...+...++.+......|+|| ++.|+..+ .++...+|. +.. +.....+..+.+.+....|+||
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPD---------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD---- 337 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPD---------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD---- 337 (428)
T ss_pred cceEeecCCCCCcCCeEECCC---------CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC----
Confidence 333444444344567899998 67655544 567666664 432 3334555555567788899999
Q ss_pred CCCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 637 PWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 637 ~~~~~l~S~s~D---gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
|+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+....+ ++...|++||+.+++..+
T Consensus 338 --G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 338 --GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRK 409 (428)
T ss_pred --CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 8888776543 468999999888754433 33456789999999998865543 223689999998887654
Q ss_pred EE
Q 000473 714 VL 715 (1471)
Q Consensus 714 ~l 715 (1471)
..
T Consensus 410 Lt 411 (428)
T PRK01029 410 IV 411 (428)
T ss_pred ee
Confidence 43
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=81.06 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=87.1
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCC-EEEEEECCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000473 566 FLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 566 l~gH~~~V~~la~spd~~~~~~~~~~~-~L~SGs~Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
+..+.+.+.+++|+|| ++ ++++.+.++ .|.+||+.+++. ..+..+.+......|+|+ ++.+
T Consensus 229 ~~~~~~~~~~~~~spD---------g~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d------g~~l 292 (417)
T TIGR02800 229 VASFPGMNGAPAFSPD---------GSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD------GKSI 292 (417)
T ss_pred eecCCCCccceEECCC---------CCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC------CCEE
Confidence 4455666778899998 55 445665554 588999988764 344455555567789998 8877
Q ss_pred EEEeCC-C--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 643 LSVGED-F--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 643 ~S~s~D-g--sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
+.++.. + .|.++|+.+++.. .+..+...+....|+|+|++|+.++.+ .+...|++||+.++..
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~-----~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE-----GGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc-----CCceEEEEEeCCCCCe
Confidence 766543 3 5778888877654 334455667788999999999988876 1113899999988654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=80.93 Aligned_cols=134 Identities=14% Similarity=0.230 Sum_probs=95.5
Q ss_pred eEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCce---EEEEecc-----CCCEEEEEECCC
Q 000473 562 SRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPP 632 (1471)
Q Consensus 562 ~~~~l-~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~---l~~~~~H-----~~~V~~l~fspd 632 (1471)
+.+.+ .+|+--|+++.+..| .+.++|+ .|-.|.+|++.--.. +-.++.| +.-|++-.|+|.
T Consensus 155 prRv~aNaHtyhiNSIS~NsD---------~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~ 224 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSD---------KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH 224 (433)
T ss_pred eeeeccccceeEeeeeeecCc---------cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh
Confidence 34444 578889999999887 7788877 688999999874321 1122222 345788899998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEecC------------CCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000473 633 QTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPG------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1471)
Q Consensus 633 ~~~~~~~~~l~S~s~DgsV~lWdl~t~~~----l~~~~g------------h~~~V~~v~~spdg~~L~sgs~D~sg~~D 696 (1471)
+ .+.|+-.+.-|+|+|-|++.... -..|.. --..|..++|++.|+||++-..
T Consensus 225 ~-----cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy------- 292 (433)
T KOG1354|consen 225 H-----CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY------- 292 (433)
T ss_pred H-----ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------
Confidence 6 56899999999999999984321 011111 1125789999999999998665
Q ss_pred CCCEEEEEEC-CCCeEEEEEeCCC
Q 000473 697 AVDVLFIWDV-KTGARERVLRGTA 719 (1471)
Q Consensus 697 ~~gtV~VWDi-~tg~~~~~l~gH~ 719 (1471)
-+|++||+ ...+++.++.-|.
T Consensus 293 --ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 293 --LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred --ceeEEEeccccCCcceEEeehH
Confidence 49999999 4567777777664
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=82.78 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=88.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+..|+.+|.|.++++.... -..+.+.+.+. |...|+|+..-.. ++++|++.+++|+|++|
T Consensus 266 Lv~~GcRngeI~~iDLR~rn----------qG~~~~a~rly-h~Ssvtslq~Lq~--------s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRN----------QGNGWCAQRLY-HDSSVTSLQILQF--------SQQKLMASDMTGKIKLY 326 (425)
T ss_pred eeEecccCCcEEEEEeeecc----------cCCCcceEEEE-cCcchhhhhhhcc--------ccceEeeccCcCceeEe
Confidence 78999999999996654211 11223344443 8889999987542 27899999999999999
Q ss_pred ECCCCce---EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000473 607 DLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 607 Dl~tg~~---l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~ 669 (1471)
|++.-++ +..+.+|...-.-+-+.- ++....++++++|...|+|.++.|..+.+++-..
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eehhhhcccceeeeeccccccccccccc----ccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 9987666 888999965443333322 2225688899999999999999999998877443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=88.35 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=124.8
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCc
Q 000473 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1471)
Q Consensus 523 f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1471)
++-..++.|..+|.+.+...+ +.+ .+...|... .. .|.+++|||.||+
T Consensus 47 v~~~~~~~GtH~g~v~~~~~~----------------~~~-~~~~~~s~~------~~---------~Gey~asCS~DGk 94 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTTCQ----------------GNP-KTNFDHSSS------IL---------EGEYVASCSDDGK 94 (846)
T ss_pred hhcceeeeccccceEEEEecC----------------Ccc-ccccccccc------cc---------CCceEEEecCCCc
Confidence 444469999999999995544 122 223334433 22 3899999999999
Q ss_pred EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcC
Q 000473 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 603 I~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~---t~~~l~~~~gh~~~V~~v~~sp 679 (1471)
|.+-.+.+.+..+++.- ..++.+++++|+ ..+...+.+++||.-| +.++.-+ ....+ .+..-.++|.++.|.
T Consensus 95 v~I~sl~~~~~~~~~df-~rpiksial~Pd-~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDF-KRPIKSIALHPD-FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred EEEeeccCCccceeEec-CCcceeEEeccc-hhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec-
Confidence 99999999988877754 468999999998 3344467899999888 6665422 12222 344556789999997
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCc
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1471)
Q Consensus 680 dg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~ 745 (1471)
|++++-+..+ -|+|||+.+++.+..+.-....+-...|-+.......+..|++|..
T Consensus 170 -g~lIAWand~---------Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d 225 (846)
T KOG2066|consen 170 -GNLIAWANDD---------GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD 225 (846)
T ss_pred -CcEEEEecCC---------CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC
Confidence 6788877766 4899999999988887766555555545555555566677777766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.002 Score=79.43 Aligned_cols=158 Identities=12% Similarity=0.046 Sum_probs=99.2
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC
Q 000473 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1471)
Q Consensus 523 f~P~--~lv-~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~ 599 (1471)
|+|+ .++ +...+|...|+.|+ ..++. ...+..|.+......|+|+ ++.|+..+.
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d-------------~~~~~-~~~l~~~~~~~~~~~~s~d---------g~~l~~~s~ 297 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMD-------------LDGKQ-LTRLTNGPGIDTEPSWSPD---------GKSIAFTSD 297 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEE-------------CCCCC-EEECCCCCCCCCCEEECCC---------CCEEEEEEC
Confidence 5555 454 44556655554454 22332 2334445555567788987 676665543
Q ss_pred -CC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000473 600 -DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 600 -Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dg---sV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
++ .|.+||+.+++. ..+..+...+....|+|+ ++.++..+.++ .|.+||+.++... .+..+ ....
T Consensus 298 ~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spd------g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~ 368 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPD------GDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDE 368 (417)
T ss_pred CCCCceEEEEECCCCCE-EEeecCCCCccCeEECCC------CCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCC
Confidence 33 578888887764 344455666788899999 88888888776 7899999886543 33322 2245
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
...|+|++++|+..+.+ ++...+++.+. +|...+.+..+
T Consensus 369 ~p~~spdg~~l~~~~~~-----~~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR-----GGRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred CceECCCCCEEEEEEeC-----CCcEEEEEEEC-CCceeeECCCC
Confidence 56899999999988876 22235666664 35555555433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=88.32 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=118.5
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg---~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D 648 (1471)
.|-.+.|+|..+ ...++++.+...+| +|++... ..-..+.+|+..|+.+.|+|.+ ...+++++.|
T Consensus 69 ~vad~qws~h~a------~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvd 136 (1081)
T KOG0309|consen 69 QVADVQWSPHPA------KPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVD 136 (1081)
T ss_pred hhcceecccCCC------CceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeecccc
Confidence 366677776521 25788888777655 7988632 3446778999999999999984 5699999999
Q ss_pred CcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeee
Q 000473 649 FSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDH 726 (1471)
Q Consensus 649 gsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~gH~~~v~~~~ 726 (1471)
..|..||+++. .++..+..-...-..|+|+--...+.+.+.. ..|+|||.+-| ..+..+.||.+.+..+.
T Consensus 137 t~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg--------~~i~vwd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG--------NDIFVWDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred ccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC--------CceEEEeccCCCcceEEecccceeeehHH
Confidence 99999999875 4566666555667889998766666555554 68999999865 67889999998888776
Q ss_pred eeeccccccccceEEcCCccccccceeeccCCceEeeccccc
Q 000473 727 FCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1471)
Q Consensus 727 ~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~w~l~~~ 768 (1471)
|.... -+.+++.+.|++++.|+..+.
T Consensus 209 fnr~~----------------~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 209 FNRFK----------------YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred Hhhhh----------------hhhhcccCCCCceeeeccccc
Confidence 55211 123456667999999987543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=79.57 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=91.1
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC---CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D---gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
.+.+..|...+....|+|| ++.|+..+.+ ..|.+||+.+++... +....+.+....|+|+ |
T Consensus 191 ~~~l~~~~~~~~~p~wSpD---------G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPD---------GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeECCC---------CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 3556667788999999998 7777665533 368899999887543 3333445567899999 8
Q ss_pred CEEE-EEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 640 ~~l~-S~s~Dg--sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
+.++ +.+.++ .|.+||+.+++..+ +..+........|+|||+.|+..+.. ++...|++||+.+|+..+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 7666 555555 57888999877643 44455556778999999988776643 222579999998887544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.038 Score=66.53 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=67.7
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEECC---CcEEEEECCCCceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1471)
Q Consensus 569 H~~~V~~la~spd~~~~~~~~~~~~L~SGs~D---gtI~lWDl~tg~~l-~~~~~H~~~V~~l~fspd~~~~~~~~~l~S 644 (1471)
-.+.=+.+.|+|. +++++.++-| |.|-+||....... ..+.+-. ..-+.|+|+ ++++.+
T Consensus 314 Pe~~rNT~~fsp~---------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd------~qF~~~ 376 (561)
T COG5354 314 PEQKRNTIFFSPH---------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPD------GQFYDT 376 (561)
T ss_pred CCcccccccccCc---------ccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCC------ceEEEe
Confidence 3444467788987 7888887766 57899998654333 3554433 355679999 887776
Q ss_pred Ee------CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000473 645 VG------EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 645 ~s------~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D 690 (1471)
.- .|..|+|||+...... ..+.+.|.|.+++..+.+.+
T Consensus 377 ~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 377 DTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred cCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccC
Confidence 53 4889999998743321 46789999999988776655
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00095 Score=74.94 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=92.2
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEE--EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000473 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1471)
Q Consensus 574 ~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~--~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV 651 (1471)
.++.|++- +..++++-.+|.+.+-+.....+.. .++.|.-+.+...|+..+ .+.+.+||+|+.+
T Consensus 125 lslD~~~~---------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-----pnlvytGgDD~~l 190 (339)
T KOG0280|consen 125 LSLDISTS---------GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-----PNLVYTGGDDGSL 190 (339)
T ss_pred eEEEeecc---------CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-----CceEEecCCCceE
Confidence 46677764 6779999999999866665555443 788999999999998763 5799999999999
Q ss_pred EEEECC-CCcEEEE-ecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEE
Q 000473 652 ALASLE-TLRVERM-FPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKT-GARE 712 (1471)
Q Consensus 652 ~lWdl~-t~~~l~~-~~gh~~~V~~v~~spd-g~~L~sgs~D~sg~~D~~gtV~VWDi~t-g~~~ 712 (1471)
..||++ .++.+.. -.-|...|.+|.-+|. +.+|+||+.| ..|++||.++ |+++
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD--------e~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD--------ECIRVLDTRNMGKPL 247 (339)
T ss_pred EEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc--------cceeeeehhcccCcc
Confidence 999999 4444433 4568889999998875 5689999988 8999999984 4543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0073 Score=75.03 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=82.0
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEE-EEECCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~-SGs~Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s 646 (1471)
.+.+....|+|| ++.|+ +.+.++ .|.+||+.+++.. .+..+........|+|+ |+.++..+
T Consensus 242 ~g~~~~~~~SpD---------G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD------g~~i~f~s 305 (430)
T PRK00178 242 EGLNGAPAWSPD---------GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKD------GRTLYFTS 305 (430)
T ss_pred CCCcCCeEECCC---------CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCC------CCEEEEEE
Confidence 344557899998 66554 665555 5888899887653 45556666677889999 77766555
Q ss_pred C-CC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 647 E-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 647 ~-Dg--sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
. ++ .|.++|+.+++..+... .........|+|+|++|+....+ ++...|++||+.+++.
T Consensus 306 ~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 3 33 57777888887644332 12234467899999999887754 1124699999998864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.003 Score=78.34 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=79.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEE-C----CCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 569 H~~~V~~la~spd~~~~~~~~~~~~L~SGs-~----DgtI~lWDl~tg---~~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
..+.....+|+|| ++.|+-.+ . |..+..||+..+ +.......+.+......|+|| |+
T Consensus 229 ~~g~~~~p~wSPD---------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~ 293 (428)
T PRK01029 229 LQGNQLMPTFSPR---------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GT 293 (428)
T ss_pred CCCCccceEECCC---------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CC
Confidence 3444556899998 66555433 2 334555787653 333333333344567899999 88
Q ss_pred EEEEEe-CCCcEEEEE--CCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 641 CFLSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 641 ~l~S~s-~DgsV~lWd--l~t-~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
.|+..+ .++...+|. +.. +...+.+..+...+....|+|||++|+..+.+ ++...|++||+.+|+..+
T Consensus 294 ~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 294 RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQ 365 (428)
T ss_pred EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEE
Confidence 777665 467666664 432 23344454455567889999999999877654 223579999999987643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0059 Score=76.31 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=97.9
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEE-EEE
Q 000473 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGS 598 (1471)
Q Consensus 523 f~P~--~lv-~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~-SGs 598 (1471)
|+|+ .++ +...+|...|+.++ .++++. ..+..|...+....|+|| +++|+ +..
T Consensus 269 wSPDG~~La~~~~~~g~~~Iy~~d-------------l~tg~~-~~lt~~~~~~~~p~wSpD---------G~~I~f~s~ 325 (448)
T PRK04792 269 FSPDGKKLALVLSKDGQPEIYVVD-------------IATKAL-TRITRHRAIDTEPSWHPD---------GKSLIFTSE 325 (448)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEEE-------------CCCCCe-EECccCCCCccceEECCC---------CCEEEEEEC
Confidence 5665 454 45678876665555 233333 344555556678899998 66554 443
Q ss_pred CCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecCCCCCcE
Q 000473 599 MDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETLRVERMFPGHPNYPA 673 (1471)
Q Consensus 599 ~Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~-Dg--sV~lWdl~t~~~l~~~~gh~~~V~ 673 (1471)
.++ .|.++|+.+++... +..+........|+|+ |+.++..+. ++ .|.++|+.+++........ ...
T Consensus 326 ~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpD------G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~ 396 (448)
T PRK04792 326 RGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPD------GRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDE 396 (448)
T ss_pred CCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCC------CCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCC
Confidence 444 46667887777543 2222223345689999 887766654 33 4556788887754322221 223
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~ 721 (1471)
...|+|+|++|+....+ ++...+++++. +|...+.+..+.+.
T Consensus 397 ~ps~spdG~~I~~~~~~-----~g~~~l~~~~~-~G~~~~~l~~~~g~ 438 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTY-----QGKQVLAAVSI-DGRFKARLPAGQGE 438 (448)
T ss_pred CceECCCCCEEEEEEec-----CCceEEEEEEC-CCCceEECcCCCCC
Confidence 45899999999887765 22246888887 56677777665443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=86.45 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=123.0
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000473 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1471)
Q Consensus 510 ~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~ 588 (1471)
....|..+..... .+++|+.||.++|...++-... ...+ .-...+...-++|.||.+.|.-+.|...
T Consensus 15 vkL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQtLeGH~~sV~vvTWNe~------- 82 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQTLEGHNASVMVVTWNEN------- 82 (1189)
T ss_pred ceEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccc-cccccccchhhhhccCcceEEEEEeccc-------
Confidence 4566666665555 6999999999999776532211 0011 1122233445789999999999999876
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEe
Q 000473 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMF 665 (1471)
Q Consensus 589 ~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~--H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l-~~~ 665 (1471)
.+.|-|...+|.|.+|-+..|.....|.. ..+-|.++.|+.+ |..++-+-.||.|.+=.++..+.. ..+
T Consensus 83 --~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 83 --NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred --cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhc
Confidence 78899999999999999998875544432 3456899999999 999999999999988777654432 122
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 666 ~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.|. ....+.|++|.+.++.+-.+ |.+.++|.+.
T Consensus 155 kg~--~l~hv~ws~D~~~~Lf~~an--------ge~hlydnqg 187 (1189)
T KOG2041|consen 155 KGQ--LLAHVLWSEDLEQALFKKAN--------GETHLYDNQG 187 (1189)
T ss_pred chh--eccceeecccHHHHHhhhcC--------CcEEEecccc
Confidence 221 23478999999988887777 8999999753
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=81.15 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=74.4
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEE
Q 000473 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 564 ~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~-~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
..+.||-.-++.++++|| +++++++..|..|++=....-..+..|. ||...|..++.-++ +.|
T Consensus 145 ~~~lGhvSml~dVavS~D---------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPD---------DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLL 208 (390)
T ss_pred chhhhhhhhhheeeecCC---------CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------cee
Confidence 445699999999999998 8999999999999987665544555554 69999999999875 568
Q ss_pred EEEeCCCcEEEEECCCCcEEEEec
Q 000473 643 LSVGEDFSVALASLETLRVERMFP 666 (1471)
Q Consensus 643 ~S~s~DgsV~lWdl~t~~~l~~~~ 666 (1471)
+|+|.|+++++||+++|++++.+.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999987765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0042 Score=77.58 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=88.6
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC-CC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 564 ~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~-Dg--tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
+.+..+...+.+..|+|| ++.|+-.+. ++ .|.+||+.+++... +....+......|+|+ |+
T Consensus 211 ~~l~~~~~~~~~p~wSPD---------G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPD---------GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceECCC---------CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 455566778899999998 676665543 33 58899998887532 2222334457889999 77
Q ss_pred EEE-EEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 641 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 641 ~l~-S~s~Dgs--V~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
.|+ +.+.++. |.++|+++++..+ +..+........|+|||++|+..+.. ++...|+++|+.+|+..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 665 4566665 7777888877543 44455566788999999999876643 122578889998887544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00023 Score=78.48 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=71.1
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCC
Q 000473 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCP 680 (1471)
Q Consensus 602 tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~-l~~~~gh~~~V~~v~~spd 680 (1471)
..+.|+++..+.+..-..-...|.+++-+|.. .+.+++|+.||.+.+||.+.... ...+..|+.+++.|.|+|.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 45667766444332222223448888888874 66888999999999999998753 3456789999999999994
Q ss_pred -CCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 681 -g~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+..|+++++| |.+.-||..+
T Consensus 235 ~p~~Lft~sed--------Gslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSED--------GSLWHWDAST 255 (319)
T ss_pred CchheeEecCC--------CcEEEEcCCC
Confidence 5689999999 9999999765
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.13 Score=62.74 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=84.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECC---CcE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSI 603 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~D---gtI 603 (1471)
.++.|+.--.+.|++.+ +.++..| -.++=+++-|+|. +++|+-+|-+ |.|
T Consensus 286 ~VvyGfMPAkvtifnlr----------------~~~v~df--~egpRN~~~fnp~---------g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR----------------GKPVFDF--PEGPRNTAFFNPH---------GNIILLAGFGNLPGDM 338 (566)
T ss_pred EEEEecccceEEEEcCC----------------CCEeEeC--CCCCccceEECCC---------CCEEEEeecCCCCCce
Confidence 57788888888883322 2333333 3566678899997 7877776644 789
Q ss_pred EEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000473 604 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------DFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 604 ~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~------DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~ 677 (1471)
-+||+.+.+++..+..-.. +-+.|+|| |++|+|+.. |+.++||+.. |+.+..-. ..+....+.|
T Consensus 339 EvwDv~n~K~i~~~~a~~t--t~~eW~Pd------Ge~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~-f~sEL~qv~W 408 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANT--TVFEWSPD------GEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKM-FKSELLQVEW 408 (566)
T ss_pred EEEeccchhhccccccCCc--eEEEEcCC------CcEEEEEeccccEEecCCeEEEEec-Cceeehhh-hhHhHhheee
Confidence 9999999999988876543 55789999 999998864 8999999986 55543321 1115788999
Q ss_pred cCCC
Q 000473 678 DCPR 681 (1471)
Q Consensus 678 spdg 681 (1471)
.|-.
T Consensus 409 ~P~~ 412 (566)
T KOG2315|consen 409 RPFN 412 (566)
T ss_pred eecC
Confidence 8743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.23 Score=59.92 Aligned_cols=123 Identities=18% Similarity=0.278 Sum_probs=83.9
Q ss_pred ccEEEEEEecCCCCcccCcCCC-EEEEEECCCcEEEEECC--CCce--EEEEecc------CCCEEEEEECCCCCCCCCC
Q 000473 571 GAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLG--SGNL--ITVMHHH------VAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 571 ~~V~~la~spd~~~~~~~~~~~-~L~SGs~DgtI~lWDl~--tg~~--l~~~~~H------~~~V~~l~fspd~~~~~~~ 639 (1471)
..-.-++|+|+ ++ ..+..-.+++|.++++. ++.. +..+... ......|+++|+ |
T Consensus 192 ~GPRh~~f~pd---------g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g 256 (345)
T PF10282_consen 192 SGPRHLAFSPD---------GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------G 256 (345)
T ss_dssp SSEEEEEE-TT---------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------S
T ss_pred CCCcEEEEcCC---------cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------C
Confidence 34678999997 55 45666788899999998 4532 2222211 125788999999 7
Q ss_pred CEEE-EEeCCCcEEEEECC--CCc--EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEE
Q 000473 640 DCFL-SVGEDFSVALASLE--TLR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1471)
Q Consensus 640 ~~l~-S~s~DgsV~lWdl~--t~~--~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi--~tg~~~ 712 (1471)
+++. +.-.+.+|.++++. +++ .+..+......++.++++|+|++|++++.+ ++.|.+|++ ++|.+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEE
Confidence 7554 45567899999993 343 344454445568999999999999999987 378999865 688875
Q ss_pred EEE
Q 000473 713 RVL 715 (1471)
Q Consensus 713 ~~l 715 (1471)
..-
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00052 Score=81.36 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=118.5
Q ss_pred CCCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCc--eeeeEEecccccceeEeeeccccccccCccccccccc
Q 000473 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSE--IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1471)
Q Consensus 12 ~~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~--~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~ 89 (1471)
=+.+...|.+++.-.+..-+++++.|.+|++|.+.++.++. .....+...|+.+|.++.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf------------------ 792 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF------------------ 792 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee------------------
Confidence 34566678888888888889999999999999998643211 1234566799999999984
Q ss_pred ccccccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCC-CCeEEEEcceecccCCccccccc
Q 000473 90 NSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NPRYVCIGCCFIDTNQLSDHHSF 168 (1471)
Q Consensus 90 ~~~~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~~ll~~G~~~id~~~~~~~h~~ 168 (1471)
-.+..++ ++.||.|.+||---|+.+....-.+.+|....|..++. +..++..||.
T Consensus 793 ---------L~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------------- 848 (1034)
T KOG4190|consen 793 ---------LADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------------- 848 (1034)
T ss_pred ---------eecccee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc-------------
Confidence 3344445 45699999999888877765433445577778887776 5556666764
Q ss_pred ccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCcc-cc-CCeEEEEEeeecCCCCceeEEEEeCCCcEEEEE
Q 000473 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNL-SI-GPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1471)
Q Consensus 169 ~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~-s~-~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~ 246 (1471)
...+|.++|.++.+-...+.-++. -| .-+.++++.+ .|+ .+.+|-++|+|.+-|
T Consensus 849 -------------------aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~---~GN--~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 849 -------------------AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD---KGN--KLAAALSNGCIAILD 904 (1034)
T ss_pred -------------------chhhheeeecccccceeeEEeccCCCCchheeEEEecc---Ccc--hhhHHhcCCcEEEEe
Confidence 125677888887665554443111 11 2267777763 343 366777789999999
Q ss_pred CCCC
Q 000473 247 ISKE 250 (1471)
Q Consensus 247 l~~~ 250 (1471)
..++
T Consensus 905 aR~G 908 (1034)
T KOG4190|consen 905 ARNG 908 (1034)
T ss_pred cCCC
Confidence 8776
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.015 Score=69.02 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=105.7
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCC-cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 567 ~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dg-tI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~ 645 (1471)
-+|.+.|.-..+.-+ ++-++-|..|| .+-++|..+++ ..++...-+.|.++..+|+ |..++.+
T Consensus 356 v~~~~~VrY~r~~~~---------~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQVD---------PEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEccC---------CcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCC------CcEEEEE
Confidence 478888888888765 56888999999 89999998776 4566677789999999999 9988888
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000473 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1471)
Q Consensus 646 s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~ 714 (1471)
.....+.+.|++++.....=....+-|+...|+|++++++-+--+ |+.- ..|+++|+.+++....
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~t--q~Iklydm~~~Kiy~v 484 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYT--QSIKLYDMDGGKIYDV 484 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceee--eeEEEEecCCCeEEEe
Confidence 888899999999998755545566779999999999999988765 4444 6899999999886554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.063 Score=66.42 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=86.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
..++.|-.++|.+++.+ .++|+.+-..|.|.-+.+..+-+...... ...|.++..+=+ ...+
T Consensus 497 ~kt~~G~~DpICAl~~s-----------dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNCn------stRl 558 (1189)
T KOG2041|consen 497 TKTLLGSKDPICALCIS-----------DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNCN------STRL 558 (1189)
T ss_pred ceeeccCCCcceeeeec-----------ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeeccC------cchh
Confidence 45677889999999876 68999999999999999988776655533 346788887655 5566
Q ss_pred EEEeCCCcEEEEECC---CCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 643 LSVGEDFSVALASLE---TLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 643 ~S~s~DgsV~lWdl~---t~~~l~-~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
+...--|.+.+.|+. +|..+. .+......|+.+.|..|...|+.--.- ..++|++-.
T Consensus 559 AiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeK--------trmyifrgn 619 (1189)
T KOG2041|consen 559 AIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEK--------TRMYIFRGN 619 (1189)
T ss_pred hhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhh--------ceEEEecCc
Confidence 666667788888885 455544 334455679999998888777655544 567777643
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00086 Score=74.06 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=64.4
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l-~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dgs 650 (1471)
.|++++-||.. .+.+++|+.||.+.+||.+..... ..+..|..+++.+-|+|.. +..|.++++||+
T Consensus 181 ~v~~l~~hp~q--------q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPAQ--------QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCccc--------ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCCc
Confidence 49999999972 678999999999999999887543 5577899999999999985 778999999999
Q ss_pred EEEEECCC
Q 000473 651 VALASLET 658 (1471)
Q Consensus 651 V~lWdl~t 658 (1471)
+.-||-.+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0025 Score=80.56 Aligned_cols=139 Identities=13% Similarity=0.184 Sum_probs=110.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEE--------
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-------- 598 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs-------- 598 (1471)
.+.+|...|+|.+ .|..+.+.++++..|++.|..+..+ |+.|+++|
T Consensus 189 ~lf~G~t~G~V~L---------------rD~~s~~~iht~~aHs~siSDfDv~-----------GNlLitCG~S~R~~~l 242 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFL---------------RDPNSFETIHTFDAHSGSISDFDVQ-----------GNLLITCGYSMRRYNL 242 (1118)
T ss_pred EEEeecccceEEe---------------ecCCcCceeeeeeccccceeeeecc-----------CCeEEEeecccccccc
Confidence 6889999999998 2455668899999999999988765 78899887
Q ss_pred -CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE---CCCC-cEEEEecCCCCCcE
Q 000473 599 -MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---LETL-RVERMFPGHPNYPA 673 (1471)
Q Consensus 599 -~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWd---l~t~-~~l~~~~gh~~~V~ 673 (1471)
.|.-|+|||++.-+.+..+..+.++ .-+.|.|.- ...++.++..|...+-| +.+. .-+.++..-...+.
T Consensus 243 ~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~ 316 (1118)
T KOG1275|consen 243 AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGIS 316 (1118)
T ss_pred cccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----cceEEEEecccceeeccccccCCCccceeEEccCCCcce
Confidence 4567899999988877777777766 567788874 45788888999999999 3332 22344444455689
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 674 ~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+..++++++.|+.|..+ |.|.+|-
T Consensus 317 ~fDiSsn~~alafgd~~--------g~v~~wa 340 (1118)
T KOG1275|consen 317 AFDISSNGDALAFGDHE--------GHVNLWA 340 (1118)
T ss_pred eEEecCCCceEEEeccc--------CcEeeec
Confidence 99999999999999888 9999997
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.59 Score=56.79 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=85.5
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000473 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1471)
Q Consensus 565 ~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S 644 (1471)
...+-.++|....|.|+ + ++--+++|-++-++.++|++.. ....+ -.+.=..+.|+|. +++++.
T Consensus 269 V~~~~~~pVhdf~W~p~-----S--~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~------~r~il~ 332 (561)
T COG5354 269 VEKDLKDPVHDFTWEPL-----S--SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPH------ERYILF 332 (561)
T ss_pred eeccccccceeeeeccc-----C--CceeEEecccccceeecccccc-eEEec--CCcccccccccCc------ccEEEE
Confidence 33355789999999997 1 1224566779999999999754 44333 3444567889998 889998
Q ss_pred EeCC---CcEEEEECCCCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 645 VGED---FSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 645 ~s~D---gsV~lWdl~t~~~l~-~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
++-| |.+-+||....-.+. .+.+-. ..-+.|+||+.|+.+.... ---..|..|.|||+..
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVYG 396 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCC--cccccCcceEEEEecC
Confidence 8766 789999987654433 555433 3457899999999876432 1112347899999853
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0087 Score=68.09 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+...+.|+.|.+|+. ...+-...+..-...+....|+|| | .+.|.+..-|-.|.+|
T Consensus 63 ilC~~yk~~~vqvwsl---------------~Qpew~ckIdeg~agls~~~WSPd-----g---rhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSL---------------VQPEWYCKIDEGQAGLSSISWSPD-----G---RHILLTSEFDLRITVW 119 (447)
T ss_pred eeeeeeccceEEEEEe---------------ecceeEEEeccCCCcceeeeECCC-----c---ceEeeeecceeEEEEE
Confidence 4555678999999432 222334556666778999999998 1 4677788889999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC------------------------------------CCc
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------------------------------------DFS 650 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~------------------------------------Dgs 650 (1471)
.+.+.+....-... ..+..++|+|+ |++.+-.+. +..
T Consensus 120 SL~t~~~~~~~~pK-~~~kg~~f~~d------g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 120 SLNTQKGYLLPHPK-TNVKGYAFHPD------GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred EeccceeEEecccc-cCceeEEECCC------CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 99987755433222 23577888887 443332221 233
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 651 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 651 V~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
+.+||---.-.+..++. .-.+..+.|+|.+++|++|+.| +.+||-+--|.+..
T Consensus 193 laVwd~~Leykv~aYe~-~lG~k~v~wsP~~qflavGsyD--------~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 193 LAVWDNVLEYKVYAYER-GLGLKFVEWSPCNQFLAVGSYD--------QMLRVLNHFTWKPF 245 (447)
T ss_pred EEEecchhhheeeeeee-ccceeEEEeccccceEEeeccc--------hhhhhhceeeeeeh
Confidence 45555321111222221 1358889999999999999998 89998776554443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.031 Score=76.68 Aligned_cols=117 Identities=13% Similarity=0.127 Sum_probs=85.0
Q ss_pred cEEEEEEecCCCCcccCcCCC-EEEEEECCCcEEEEECCCCceEEEEe-------------ccC--------CCEEEEEE
Q 000473 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMH-------------HHV--------APVRQIIL 629 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~-~L~SGs~DgtI~lWDl~tg~~l~~~~-------------~H~--------~~V~~l~f 629 (1471)
..+.++++|+ +. ++++-+.++.|++||+.++....... .+. ..-..+++
T Consensus 741 ~P~GIavspd---------G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 741 QPSGISLSPD---------LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred CccEEEEeCC---------CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 3467899987 44 77777888999999998765321110 000 12357788
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000473 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1471)
Q Consensus 630 spd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~-------------gh~~~V~~v~~spdg~~L~sgs~D~sg~~D 696 (1471)
+|+ |+.+++-..++.|++||..++....... ++-..+..|+++++|+.+++-+.+
T Consensus 812 d~d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------ 879 (1057)
T PLN02919 812 AKD------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------ 879 (1057)
T ss_pred eCC------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------
Confidence 888 8889999999999999998877654321 112357889999999877766665
Q ss_pred CCCEEEEEECCCCeE
Q 000473 697 AVDVLFIWDVKTGAR 711 (1471)
Q Consensus 697 ~~gtV~VWDi~tg~~ 711 (1471)
++|++||+.+++.
T Consensus 880 --n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 --SLIRYLDLNKGEA 892 (1057)
T ss_pred --CEEEEEECCCCcc
Confidence 8999999999875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.032 Score=62.28 Aligned_cols=148 Identities=9% Similarity=-0.076 Sum_probs=101.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEECCCcEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~--~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~ 604 (1471)
.+..++.|.++++...+. .+.+. .-|.. .++.+++++| ++++++.+....|.
T Consensus 130 ~~~i~sndht~k~~~~~~-------------~s~~~----~~h~~~~~~ns~~~snd---------~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSG-------------DSNKF----AVHNQNLTQNSLHYSND---------PSWGSSVGDSRRVF 183 (344)
T ss_pred ceeeccCCcceeEEEEec-------------Ccccc----eeeccccceeeeEEcCC---------CceEEEecCCCcce
Confidence 466778888888854431 11111 11332 2788999997 89999999999999
Q ss_pred EEECCCC-ceE-E-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-----EecCCCCCcEEEE
Q 000473 605 IWDLGSG-NLI-T-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-----MFPGHPNYPAKVV 676 (1471)
Q Consensus 605 lWDl~tg-~~l-~-~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~-----~~~gh~~~V~~v~ 676 (1471)
.+.+... +.+ . ....-...=.+..|+.. ...||++..||++.|||++...... +-+.|.+.+..+.
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 9998743 322 2 12222333466778776 6799999999999999998754332 2245888999999
Q ss_pred EcCCCC---EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 677 WDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 677 ~spdg~---~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
|+|-|. ++++-.. +.+.|-|++++...+.+
T Consensus 258 Fsl~g~lDLLf~sEhf---------s~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHF---------SRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ecCCCcceEEEEecCc---------ceEEEEEcccCceeeEE
Confidence 997543 4444433 68999999998754443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.013 Score=73.09 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=101.9
Q ss_pred ccCC-EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc-cC--cCCCEEEEEE
Q 000473 523 YAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK-GW--SFNEVLVSGS 598 (1471)
Q Consensus 523 f~P~-~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~-~~--~~~~~L~SGs 598 (1471)
++|. .++.|+.+ .|.|. |..+-+.++.+.-|...|+.+.|.|...-.+ .. ...-+|+++.
T Consensus 23 w~~~GLiAygshs-lV~VV---------------Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 23 WSPSGLIAYGSHS-LVSVV---------------DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cCccceEEEecCc-eEEEE---------------ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 4554 56777654 34442 2334466788889999999999988531111 11 1245788999
Q ss_pred CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000473 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 599 ~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~-~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~ 677 (1471)
..|.|.+||...+..+..+..|..+|..+.|-|.. ++. +.++....-.++-+|+..+|+.+...........|+.+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 99999999999999888999999999999998763 334 57888888899999999999988776655555666777
Q ss_pred cCC
Q 000473 678 DCP 680 (1471)
Q Consensus 678 spd 680 (1471)
.|-
T Consensus 164 DPf 166 (1062)
T KOG1912|consen 164 DPF 166 (1062)
T ss_pred CCC
Confidence 663
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.081 Score=72.67 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=82.6
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEecc---------------CCCEEEEEECCCCCCCCC
Q 000473 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 574 ~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H---------------~~~V~~l~fspd~~~~~~ 638 (1471)
+.++++|+ ++.++++.+.++.|++||..++... .+.+. -.....++++|+
T Consensus 686 ~gVa~dp~--------~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd------ 750 (1057)
T PLN02919 686 WDVCFEPV--------NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD------ 750 (1057)
T ss_pred eEEEEecC--------CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC------
Confidence 57889885 2678888889999999999877542 33221 123456889998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEecC---------------------CCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000473 639 SD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1471)
Q Consensus 639 ~~-~l~S~s~DgsV~lWdl~t~~~l~~~~g---------------------h~~~V~~v~~spdg~~L~sgs~D~sg~~D 696 (1471)
++ .+++-+.++.|++||++++.......+ ....+..++++++|+.+++-..+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 66 666777789999999987654221110 01135689999999877766665
Q ss_pred CCCEEEEEECCCCeEEE
Q 000473 697 AVDVLFIWDVKTGARER 713 (1471)
Q Consensus 697 ~~gtV~VWDi~tg~~~~ 713 (1471)
++|++||..++....
T Consensus 825 --~rIrviD~~tg~v~t 839 (1057)
T PLN02919 825 --HKIKKLDPATKRVTT 839 (1057)
T ss_pred --CEEEEEECCCCeEEE
Confidence 899999998876543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=2.4 Score=57.70 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=66.6
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCce--------EEEEe----------ccCCCEEEEEECC
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--------ITVMH----------HHVAPVRQIILSP 631 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~--------l~~~~----------~H~~~V~~l~fsp 631 (1471)
...|.+++|+++ +..++.-..|++|.+|....... ...+. .-...+..+.|..
T Consensus 426 ~~~v~~vaf~~~---------~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 426 PSPVNDVAFSPS---------NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN 496 (928)
T ss_pred CCCcEEEEEeCC---------CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC
Confidence 467999999986 55588889999999988543321 11111 1234567788776
Q ss_pred CCCCCCCCCEEEEEeCC---CcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 632 PQTEHPWSDCFLSVGED---FSVALASLETLR---VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 632 d~~~~~~~~~l~S~s~D---gsV~lWdl~t~~---~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
+ ...++....+ ..+.++++...+ .+.....-...+..+...++...++.-..| |.++..+
T Consensus 497 ~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~--------G~v~~~~ 562 (928)
T PF04762_consen 497 D------DTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTND--------GKVFQLS 562 (928)
T ss_pred C------CEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECC--------CEEEEee
Confidence 6 4444444443 577777774332 222222233445555555555435555555 7777554
Q ss_pred CC
Q 000473 706 VK 707 (1471)
Q Consensus 706 i~ 707 (1471)
..
T Consensus 563 ~~ 564 (928)
T PF04762_consen 563 SD 564 (928)
T ss_pred cC
Confidence 43
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=76.87 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=119.6
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~ 586 (1471)
-|+..|+.+.+.... .++.++.||.++. |.. .+ ..--+.+..+..|-+.+.+++.+.+
T Consensus 7 mhrd~i~hv~~tka~-----fiiqASlDGh~KF--WkK-------s~---isGvEfVKhFraHL~~I~sl~~S~d----- 64 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK-----FIIQASLDGHKKF--WKK-------SR---ISGVEFVKHFRAHLGVILSLAVSYD----- 64 (558)
T ss_pred cccceeeeEeeehhh-----eEEeeecchhhhh--cCC-------CC---ccceeehhhhHHHHHHHHhhhcccc-----
Confidence 367777776543333 5899999999998 431 00 0111334556677777777777665
Q ss_pred cCcCCCEEEEEEC-CCcEEEEECCCCc------------------------------------------------eEEEE
Q 000473 587 GWSFNEVLVSGSM-DCSIRIWDLGSGN------------------------------------------------LITVM 617 (1471)
Q Consensus 587 ~~~~~~~L~SGs~-DgtI~lWDl~tg~------------------------------------------------~l~~~ 617 (1471)
+.++.|++. |..++++|+.+-. ....-
T Consensus 65 ----g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 ----GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ----ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 677777666 8888887775211 00111
Q ss_pred eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC------CcE---------EEEecCCCCCcEEEEEcCCCC
Q 000473 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRV---------ERMFPGHPNYPAKVVWDCPRG 682 (1471)
Q Consensus 618 ~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t------~~~---------l~~~~gh~~~V~~v~~spdg~ 682 (1471)
.-|..+|.++.+.|. +++++|....|.|.-|..+. .+. +..+.-....+.++.|+|++.
T Consensus 141 klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 237889999999998 89999999999999999872 111 112223345678999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
.+.+-..| ..|++++.++|++++.+.
T Consensus 215 qistl~~D--------rkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 215 QISTLNPD--------RKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccCcc--------cEEEEEEeccchhhhhhh
Confidence 99998888 999999999999888765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0057 Score=70.03 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=115.1
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
..|+..|+++.+.++.. .++ ...|=.|.+ |.+ .-.|...++.|++ +. .+..-+.-|++-.|||.+
T Consensus 161 NaHtyhiNSIS~NsD~E----t~l-SADdLRINL--Wnl-ei~d~sFnIVDIK---P~-nmEeLteVITsaEFhp~~--- 225 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKE----TFL-SADDLRINL--WNL-EIIDQSFNIVDIK---PA-NMEELTEVITSAEFHPHH--- 225 (433)
T ss_pred ccceeEeeeeeecCccc----eEe-eccceeeee--ccc-cccCCceeEEEcc---cc-CHHHHHHHHhhhccCHhH---
Confidence 46888899988777776 344 344555555 542 1111122222221 10 011224468888999974
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceE----------------EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLI----------------TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l----------------~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~Dg 649 (1471)
..+++=.+..|+|++-|++...+. .-|..-...|..+.|+++ |+++++-.. -
T Consensus 226 -----cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRDy-l 293 (433)
T KOG1354|consen 226 -----CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRDY-L 293 (433)
T ss_pred -----ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEecc-c
Confidence 678888899999999999843211 112233457889999998 999988642 6
Q ss_pred cEEEEEC-CCCcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 650 SVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 650 sV~lWdl-~t~~~l~~~~gh~~------------~V---~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
+|++||+ ...+++.+++-|.. .| ..++|+.++.+++||+.. ...++++...|..
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~--------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN--------NVFRVFNLARGSK 363 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc--------ceEEEecCCCCcc
Confidence 8999999 56778888777743 22 568999999999999988 8999999776653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.49 Score=57.69 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=78.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
+..+..++.++.+..||..+|+.+...... ......+ . ++.+..++.|+.+..+|..+++.+........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 467777889999999999999987665421 1111111 2 56778888999999999999988766532111
Q ss_pred -CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000473 671 -YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 671 -~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~ 719 (1471)
....... .+.+|++++.+ |.|+++|..+|+.+..+..+.
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~--------G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFE--------GYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CccccCEE--ECCEEEEEeCC--------CEEEEEECCCCCEEEEEEcCC
Confidence 1122222 36788999888 999999999999998887555
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=79.03 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=97.4
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~-~l~~~~~H~~~V~~l~fspd~~~~~~~ 639 (1471)
.....+.||+.+|+.+-|+|.+ ...+++++.|..|..||+++.. ++..+......-.+|+|+... +
T Consensus 105 aIef~lhghsraitd~n~~~q~--------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-----p 171 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQH--------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-----P 171 (1081)
T ss_pred ceEEEEecCccceeccccCCCC--------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-----c
Confidence 4456788999999999999873 7899999999999999998764 455565555667889998762 4
Q ss_pred CEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000473 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spd-g~~L~sgs~D~sg~~D~~gtV~VWDi~tg 709 (1471)
+.++ .+.-+.|.+||++.| .++..+.+|...|+.+.|..- ...+.+.+.| |+|+.||....
T Consensus 172 ~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--------~tvkfw~y~kS 234 (1081)
T KOG0309|consen 172 NVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND--------GTVKFWDYSKS 234 (1081)
T ss_pred chhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC--------Cceeeeccccc
Confidence 4444 455678999999865 567889999998999988542 2345555555 99999998654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.31 Score=58.82 Aligned_cols=211 Identities=13% Similarity=0.139 Sum_probs=111.2
Q ss_pred eEEEEEEcCCCCeEEEEe-CCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccc
Q 000473 18 RVTATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1471)
Q Consensus 18 ~Vtava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~ 96 (1471)
.-..++++||+++|+++. .+|+|.+++++. ++.+.....+.-|.+. . |......+.--|. -
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~----g---~~~~rq~~~h~H~---------v 149 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGS----G---PNPDRQEGPHPHQ---------V 149 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEE----E---SSTTTTSSTCEEE---------E
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCC----C---Cccccccccccee---------E
Confidence 345789999999999886 589999999985 3333332222222211 0 0000000000000 0
Q ss_pred cccCCCCEEEEEe-CCCeEEEEEcCCCe--EEE--eeeCCCCCCCCcEEEEcCCCCeEEE-EcceecccCCccccccccc
Q 000473 97 KSSLDNGALISAC-TDGVLCVWSRSSGH--CRR--RRKLPPWVGSPSVICTLPSNPRYVC-IGCCFIDTNQLSDHHSFES 170 (1471)
Q Consensus 97 ~~s~d~~~LaSas-~DG~I~VWdv~~G~--ci~--~~~l~~~~g~~~~i~~~s~~~~ll~-~G~~~id~~~~~~~h~~~~ 170 (1471)
.++||+++++... ....|.+++++.+. +.. ..+++.. ..|..+. |+++++++. +...
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~-f~pdg~~~Yv~~e~--------------- 212 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLA-FSPDGKYAYVVNEL--------------- 212 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEE-E-TTSSEEEEEETT---------------
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CCCcEEE-EcCCcCEEEEecCC---------------
Confidence 1588888777653 34579999998654 433 2345532 2355555 445554443 3332
Q ss_pred ccccccccccCCCCCCCCCceEEEEeCc----ceEEEEEeecC--ccccC-CeEEEEEeeecCCCCceeEEEE-eCCCcE
Q 000473 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTY----GLTIVQTVFHG--NLSIG-PWKFMDVVSLGEDMGKHYGLMV-DSVGRL 242 (1471)
Q Consensus 171 i~~~~~~~d~~~~~~~~~~~~I~v~D~~----t~~~l~tl~s~--~~s~~-~i~~~~~~~~~~d~~~~~llva-s~dG~V 242 (1471)
..+|.+++.. ..+.++++... ..... +...+.++ ||++ .++++ ...+.|
T Consensus 213 ------------------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is---pdg~--~lyvsnr~~~sI 269 (345)
T PF10282_consen 213 ------------------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS---PDGR--FLYVSNRGSNSI 269 (345)
T ss_dssp ------------------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE----TTSS--EEEEEECTTTEE
T ss_pred ------------------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe---cCCC--EEEEEeccCCEE
Confidence 2566666655 34445544431 12222 46677777 5665 47887 778999
Q ss_pred EEEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCe
Q 000473 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1471)
Q Consensus 243 ~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~ 300 (1471)
.+++++.... . + +.+..+.+. ...-+.++++|+|+.++....+.
T Consensus 270 ~vf~~d~~~g---~----l----~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 270 SVFDLDPATG---T----L----TLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEEEECTTTT---T----E----EEEEEEEES---SSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEEEecCCC---c----e----EEEEEEeCC---CCCccEEEEeCCCCEEEEEecCC
Confidence 9999964310 0 0 011111111 11237889999999998876553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.3 Score=57.20 Aligned_cols=207 Identities=11% Similarity=0.112 Sum_probs=117.3
Q ss_pred EEEEEcCCCCeEEEEe-CCCcEEEEEccCCCCCceeeeEEecccccceeEe----eeccccccccCcccccccccccccc
Q 000473 20 TATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADL----SICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 20 tava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~L----a~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1471)
+.+++++||++|+++. .-|.|.+.-+.. ++.+.+..-+.-|.++.-.- ..|+.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~--dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a------------------- 150 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQA--DGSLQPVVQVVKHTGSGPHERQESPHVHSA------------------- 150 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEccc--CCccccceeeeecCCCCCCccccCCcccee-------------------
Confidence 8899999999999985 558899999974 34333333334455442110 001122
Q ss_pred cccccCCCCEEEEEe--CCCeEEEEEcCCCeEEEee--eCCCCCCCCcEEEEcCCCCeEEEEcceecccCCccccccccc
Q 000473 95 MGKSSLDNGALISAC--TDGVLCVWSRSSGHCRRRR--KLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFES 170 (1471)
Q Consensus 95 ~~~~s~d~~~LaSas--~DG~I~VWdv~~G~ci~~~--~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~ 170 (1471)
.+.|++++|++.. .| +|+++++++|++-... .++++ .-|..| .|+++++++.+-+-
T Consensus 151 --~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G-~GPRHi-~FHpn~k~aY~v~E--------------- 210 (346)
T COG2706 151 --NFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG-AGPRHI-VFHPNGKYAYLVNE--------------- 210 (346)
T ss_pred --eeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC-CCcceE-EEcCCCcEEEEEec---------------
Confidence 2689999998864 44 6899999999866542 23322 224444 55666766544331
Q ss_pred ccccccccccCCCCCCCCCceEEEEeCcc--e--EEEEEe---ecCccccCCeEEEEEeeecCCCCceeEEEE-eCCCcE
Q 000473 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTYG--L--TIVQTV---FHGNLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRL 242 (1471)
Q Consensus 171 i~~~~~~~d~~~~~~~~~~~~I~v~D~~t--~--~~l~tl---~s~~~s~~~i~~~~~~~~~~d~~~~~llva-s~dG~V 242 (1471)
.+.+|.+|.-.. + +.++++ ...-....|...+.++ +||+ .+++. -....|
T Consensus 211 -----------------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis---~dGr--FLYasNRg~dsI 268 (346)
T COG2706 211 -----------------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS---PDGR--FLYASNRGHDSI 268 (346)
T ss_pred -----------------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC---CCCC--EEEEecCCCCeE
Confidence 136777766544 2 233333 2323334466778877 4555 35555 334488
Q ss_pred EEEECCCCCCcccccCCCcccCCCcccceeccCCcccCceEEEEecCCcEEEEEeCCeEEE
Q 000473 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF 303 (1471)
Q Consensus 243 ~vW~l~~~~~~~~~~~~~l~~~e~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~~~ 303 (1471)
-++.++.... .+..+......-..-+...+++.|++|+....++-.+
T Consensus 269 ~~f~V~~~~g--------------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 269 AVFSVDPDGG--------------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred EEEEEcCCCC--------------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence 8888876521 0111111111111125567778898888876665433
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.24 Score=59.62 Aligned_cols=76 Identities=12% Similarity=-0.000 Sum_probs=53.4
Q ss_pred EcCCCCeEEEEeC----------CCcEEEEEccCCCCCceeeeEEec-ccc--cce----eEeeeccccccccCcccccc
Q 000473 24 ALTQPPTLYTGGS----------DGSILWWSFSDSSYSEIKPVAMLC-GHS--API----ADLSICYPAMVSRDGKAEHW 86 (1471)
Q Consensus 24 ~SpDg~~LaTGs~----------DG~I~lWdl~~~~~~~~~~~~~L~-GH~--~~V----t~La~c~~~~~s~dg~~~~~ 86 (1471)
+||||+.|+.+.. +..|.+||..+ .+++..+. +-. +.+ ..++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~---------------- 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-----HLPIADIELPEGPRFLVGTYPWMTS---------------- 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-----CcEEeEEccCCCchhhccCccceEE----------------
Confidence 9999999998755 78899999985 23333332 111 000 1111
Q ss_pred cccccccccccccCCCCEEEEEe-C-CCeEEEEEcCCCeEEEeeeCC
Q 000473 87 KAENSSNVMGKSSLDNGALISAC-T-DGVLCVWSRSSGHCRRRRKLP 131 (1471)
Q Consensus 87 ~~~~~~~~~~~~s~d~~~LaSas-~-DG~I~VWdv~~G~ci~~~~l~ 131 (1471)
+++|+++|.... + ++.|-|.|+.+++.+.....|
T Consensus 112 -----------ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 112 -----------LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred -----------ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 588888787654 3 799999999999999988776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0096 Score=73.20 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=64.0
Q ss_pred ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000473 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1471)
Q Consensus 619 ~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~ 698 (1471)
.....|.+.+++|+ .+.++.|+.||+|.+||...+-... ....-.++.++|+|+|.++++|+.-
T Consensus 257 pL~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~q-------- 320 (545)
T PF11768_consen 257 PLPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQ-------- 320 (545)
T ss_pred ecCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCC--------
Confidence 35678999999999 7899999999999999997664332 2345568899999999999999988
Q ss_pred CEEEEEECCCCeE
Q 000473 699 DVLFIWDVKTGAR 711 (1471)
Q Consensus 699 gtV~VWDi~tg~~ 711 (1471)
|.+.+||+.-...
T Consensus 321 GelQ~FD~ALspi 333 (545)
T PF11768_consen 321 GELQCFDMALSPI 333 (545)
T ss_pred ceEEEEEeecCcc
Confidence 9999999865443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.79 Score=56.11 Aligned_cols=104 Identities=11% Similarity=0.206 Sum_probs=68.5
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEE--EEE-CCCcEEEEECCC----CceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLV--SGS-MDCSIRIWDLGS----GNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~--SGs-~DgtI~lWDl~t----g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l 642 (1471)
...|...+|-|. |..++ +|. .-.++.++-+++ .+++..|.. ...+.+.|+|. |+.+
T Consensus 445 ke~vi~FaWEP~---------gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk------G~fv 507 (698)
T KOG2314|consen 445 KESVIAFAWEPH---------GDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK------GRFV 507 (698)
T ss_pred chheeeeeeccC---------CCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC------CcEE
Confidence 456788888886 44333 332 235788888773 223334432 45678999998 8877
Q ss_pred EEE---eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000473 643 LSV---GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 643 ~S~---s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D 690 (1471)
+.+ |.-|.+.++|+.-..+..+-.......+.+.|.|.|+|+++++.-
T Consensus 508 vva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 765 457899999987544433332222346889999999999987754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.006 Score=74.96 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=62.5
Q ss_pred cceeeeEecCCCCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCc
Q 000473 2 KCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDG 81 (1471)
Q Consensus 2 ~~~~~~~lw~~~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg 81 (1471)
||-+|--+ |-...|++++++|+...|+.|+.||+|++||... + ...+.-+.-..+.++
T Consensus 249 qrvsvtsi----pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~----~t~~~ka~~~P~~ia----------- 306 (545)
T PF11768_consen 249 QRVSVTSI----PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---G----VTLLAKAEFIPTLIA----------- 306 (545)
T ss_pred eEEEEEEE----ecCCcceEEecCcccceEEEEecCCeEEEEEcCC---C----eeeeeeecccceEEE-----------
Confidence 44444444 4456799999999999999999999999999873 1 122222334456666
Q ss_pred ccccccccccccccccccCCCCEEEEEeCCCeEEEEEcCCC
Q 000473 82 KAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1471)
Q Consensus 82 ~~~~~~~~~~~~~~~~~s~d~~~LaSas~DG~I~VWdv~~G 122 (1471)
+.|++..++.|++-|+|.+||+.-.
T Consensus 307 ----------------WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 ----------------WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ----------------EcCCCcEEEEEcCCceEEEEEeecC
Confidence 5788999999999999999998643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.1 Score=62.16 Aligned_cols=146 Identities=13% Similarity=0.129 Sum_probs=107.7
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCC-cEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG-~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~ 585 (1471)
+|.+.|.-.....+. ..++.|..|| .+.|++.+ ++ .+..+.+.-+.|.++..+|+
T Consensus 357 ~~~~~VrY~r~~~~~----e~~vigt~dgD~l~iyd~~---------------~~-e~kr~e~~lg~I~av~vs~d---- 412 (668)
T COG4946 357 GKKGGVRYRRIQVDP----EGDVIGTNDGDKLGIYDKD---------------GG-EVKRIEKDLGNIEAVKVSPD---- 412 (668)
T ss_pred CCCCceEEEEEccCC----cceEEeccCCceEEEEecC---------------Cc-eEEEeeCCccceEEEEEcCC----
Confidence 455556554433333 3789999999 67774333 33 34566777889999999997
Q ss_pred ccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC----CcEEEEECCCCcE
Q 000473 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRV 661 (1471)
Q Consensus 586 ~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~D----gsV~lWdl~t~~~ 661 (1471)
++.++.+...+.+-+.|+.+|+....=+...+-|+.+.|+|+ ++.+|-+--+ ..|+++|+.+++.
T Consensus 413 -----GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 413 -----GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred -----CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 899999999999999999999876555566788999999999 8888887655 4689999998887
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEE
Q 000473 662 ERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg~~L~sgs 688 (1471)
...-. ..+.=.+-+|.||+++|.--+
T Consensus 482 y~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecC-CcccccCcccCCCCcEEEEEe
Confidence 54432 223334668999999886544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0018 Score=80.90 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=101.4
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
++.++|..|+...+|++|+-+ .++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+ |.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GS 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecC---------CceEEeeeccceEEEEEccCccccccccccccccccccccCC------cc
Confidence 445667889999999999976 799999999999999999999999999999999999987777 66
Q ss_pred EEEEEeCC--CcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-Ee
Q 000473 641 CFLSVGED--FSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LR 716 (1471)
Q Consensus 641 ~l~S~s~D--gsV~lWdl~-t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~-l~ 716 (1471)
..++.+.- --..+|++. ++...+.|.+ -.++.|+..-.+-+.|+.. ..+.+||++|+..+.+ ++
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~--------d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA--------DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccc--------cceEEEecccCcHHHHhcC
Confidence 55554433 257899985 3555555543 3478898765555555554 4799999999988776 44
Q ss_pred CC
Q 000473 717 GT 718 (1471)
Q Consensus 717 gH 718 (1471)
+.
T Consensus 1225 ~~ 1226 (1516)
T KOG1832|consen 1225 DT 1226 (1516)
T ss_pred cc
Confidence 43
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.014 Score=65.96 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=105.3
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCce---EEEEecc-----CCCEEEEEECCCCCCCCC
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1471)
Q Consensus 567 ~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~---l~~~~~H-----~~~V~~l~fspd~~~~~~ 638 (1471)
..|.--++++.|..| .+.++|+ .|-.|.+|++..-.- +..++.| +.-|++..|+|..
T Consensus 169 NaH~yhiNSiS~NsD---------~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----- 233 (460)
T COG5170 169 NAHPYHINSISFNSD---------KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----- 233 (460)
T ss_pred ccceeEeeeeeecCc---------hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-----
Confidence 567778999999876 6777776 678899999874331 2223333 3457888999986
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE-E---EE------------ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000473 639 SDCFLSVGEDFSVALASLETLRV-E---RM------------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lWdl~t~~~-l---~~------------~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~ 702 (1471)
.+.|.-.+..|.|++-|++.... . .. |.+-...|..+.|+++|+|+++-.. -+|+
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvk 304 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVK 304 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEE
Confidence 45788888899999999983211 0 11 1122346788999999999987655 4999
Q ss_pred EEECCC-CeEEEEEeCCCC-----------CceeeeeeeccccccccceEEcCCcccccccee
Q 000473 703 IWDVKT-GARERVLRGTAS-----------HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1471)
Q Consensus 703 VWDi~t-g~~~~~l~gH~~-----------~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~ 753 (1471)
|||+.. ..++.++.-|.. ..+...|. +.+...+..|++|++.-.-.+.|
T Consensus 305 iwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe--isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE--ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecccccCCceeechHHHHHHHHHhhhhccceeeeEE--EEecCCcccccccccccceeeec
Confidence 999975 457777765531 22222222 23333344566666655555555
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0014 Score=81.77 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=110.5
Q ss_pred cccccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000473 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1471)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~ 583 (1471)
+|..|...-||+++..... .++.|+..|.|++++ +.+|.......+|..+|+-+.-+-+
T Consensus 1096 ~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~n---------------v~sG~~e~s~ncH~SavT~vePs~d-- 1154 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFN---------------VSSGSMEESVNCHQSAVTLVEPSVD-- 1154 (1516)
T ss_pred hhhccccceeeEEeecCCc----eEEeeeccceEEEEE---------------ccCccccccccccccccccccccCC--
Confidence 4566777888888666555 699999999999843 4566677778899999998876655
Q ss_pred CcccCcCCC-EEEEEECCC-cEEEEECC-CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000473 584 TAKGWSFNE-VLVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1471)
Q Consensus 584 ~~~~~~~~~-~L~SGs~Dg-tI~lWDl~-tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~ 660 (1471)
+. .|.+.+... -..+|++. ++.+.+.|... .++.|+.. .+.-+.|..-..+.+||++++.
T Consensus 1155 -------gs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~------~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1155 -------GSTQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNS------LQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred -------cceeeeeccccCchHHHhccccccCcccccccc----ceeehhhh------HHHHHhcccccceEEEecccCc
Confidence 44 444444444 56799986 46667777543 46777664 2222223333568899999998
Q ss_pred EEEEe-cC---CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 661 VERMF-PG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 661 ~l~~~-~g---h~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
++.++ .+ ....-+++.|+|++.+++ .| | .+||++..+.++.+.
T Consensus 1218 ~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd--------G--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND--------G--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred HHHHhcCcchhhhhhccccccCCCcceEe---eC--------c--eeeeeccHHHHhhhh
Confidence 87663 22 122336789999999887 22 4 579999877666554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.13 Score=57.95 Aligned_cols=113 Identities=12% Similarity=-0.064 Sum_probs=80.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~-~gh~ 669 (1471)
+..++.++.++.+..||..+|+.+..+............ . +..++.++.|+.+..+|.++|+.+... ....
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--D------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--E------TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--c------ccccccccceeeeEecccCCcceeeeeccccc
Confidence 577777799999999999999998887752211111111 1 456777778999999999999998874 3321
Q ss_pred C---CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000473 670 N---YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 670 ~---~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~ 719 (1471)
. .........+++.+++++.+ +.|+.+|+++|+.+.....+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTTEEEEEEESST
T ss_pred cccccccccCceEecCEEEEEecc--------CcEEEEecCCCcEEEEeecCC
Confidence 1 11222333347888888877 999999999999998887754
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.13 Score=61.74 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=80.9
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE-e---------CCCcEEEEECCCCcEEEEecCCCC
Q 000473 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-G---------EDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 601 gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~-s---------~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
++|.+.|..+++.+..+..-..+-. + ++|| ++.+..+ + .+..|.+||..+++.+..++....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD------g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD------GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC------CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8999999999999888875444433 4 8999 6655554 4 589999999999999988874322
Q ss_pred -------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000473 671 -------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 671 -------~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~g 717 (1471)
.....+++|||++|++...+ .+..|.|.|+.+++.+.++.-
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~------p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFS------PSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCC------CCCEEEEEECCCCcEEEEEeC
Confidence 34588999999999987643 238999999999999988765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.43 Score=59.25 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=81.3
Q ss_pred cEEEEEEecCCCCcccCcCCC-EEEEEEC---CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEE-EEe
Q 000473 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVG 646 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~-~L~SGs~---DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~-S~s 646 (1471)
......|+|| ++ .++-.+. +..|.++|+.+|+..... ...+.+....|+|| |+.++ +.+
T Consensus 189 ~~~~p~wSpD---------G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPD------G~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANK---------EQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKD------GSKLLLTMA 252 (419)
T ss_pred CeEeEEECCC---------CCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCC------CCEEEEEEc
Confidence 6778899998 55 3543333 357999999988765443 35556677889999 76544 444
Q ss_pred CC--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 647 ED--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 647 ~D--gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
.+ ..|.++|+.+++..+ +..+........|+|||+.|+-.+.. .+...|++.|+.+|+..+..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr-----~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDR-----LGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEeCc
Confidence 34 567777888877544 33333323456899999988877653 11247999999988875543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.4 Score=49.92 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccccccCCCCEEEEEeC---CCe
Q 000473 37 DGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT---DGV 113 (1471)
Q Consensus 37 DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~LaSas~---DG~ 113 (1471)
+..|.+|++++. .++..... +..+.+..+-|+ +++++++|-++.+ +|.
T Consensus 15 s~gI~v~~ld~~-~g~l~~~~-~v~~~~nptyl~---------------------------~~~~~~~LY~v~~~~~~gg 65 (346)
T COG2706 15 SQGIYVFNLDTK-TGELSLLQ-LVAELGNPTYLA---------------------------VNPDQRHLYVVNEPGEEGG 65 (346)
T ss_pred CCceEEEEEeCc-ccccchhh-hccccCCCceEE---------------------------ECCCCCEEEEEEecCCcCc
Confidence 567999999842 22233222 346777888888 6788888888755 467
Q ss_pred EEEEEcC--CCeEEEe--eeCCCCCCCCcEEEEcCCCCeEEEEcce
Q 000473 114 LCVWSRS--SGHCRRR--RKLPPWVGSPSVICTLPSNPRYVCIGCC 155 (1471)
Q Consensus 114 I~VWdv~--~G~ci~~--~~l~~~~g~~~~i~~~s~~~~ll~~G~~ 155 (1471)
+..+.++ +|++-.. ..++ |.|.+-..+.++++++.+..|
T Consensus 66 vaay~iD~~~G~Lt~ln~~~~~---g~~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 66 VAAYRIDPDDGRLTFLNRQTLP---GSPPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred EEEEEEcCCCCeEEEeeccccC---CCCCeEEEECCCCCEEEEEEc
Confidence 7776665 4764433 3444 667666678888888777765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.54 Score=52.89 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=72.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCC----------EEEEEECCCCCCCCCCCEEEEEeCCCc-EEEEECCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP----------VRQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETL 659 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~----------V~~l~fspd~~~~~~~~~l~S~s~Dgs-V~lWdl~t~ 659 (1471)
+..++.+..++.|..+|+.+|+.+..+..+... +..-.+..+ + .+..++.++. +.+ |+.++
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~v~~~~~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD------G-RVYVSSGDGRVVAV-DLATG 193 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT------T-EEEEECCTSSEEEE-ETTTT
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC------C-EEEEEcCCCeEEEE-ECCCC
Confidence 677888888999999999999999888765432 112222223 4 6666666774 666 99999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 660 ~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
+.+.... ...+.. ...+++..|++++.+ +.|+.||.+||+..-
T Consensus 194 ~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~--------~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 194 EKLWSKP--ISGIYS-LPSVDGGTLYVTSSD--------GRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEEC--SS-ECE-CEECCCTEEEEEETT--------TEEEEEETTTTEEEE
T ss_pred CEEEEec--CCCccC-CceeeCCEEEEEeCC--------CEEEEEECCCCCEEe
Confidence 9765443 222222 145778889888877 999999999998764
|
... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.016 Score=43.46 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=34.5
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000473 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 659 ~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWD 705 (1471)
++++..+..|...|.++.|.+++.++++++.| +.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d--------~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDD--------GTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCC--------CeEEEcC
Confidence 45667778899999999999999999999998 9999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=56.90 Aligned_cols=121 Identities=13% Similarity=0.040 Sum_probs=83.5
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEeccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-c-EEEEe-c
Q 000473 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-R-VERMF-P 666 (1471)
Q Consensus 592 ~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~--~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-~-~l~~~-~ 666 (1471)
-.+.-++.|.++++.++.-+..... .|.. .+.++.++++ +.+.++++....|-+|.+... + .++.. .
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd------~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSND------PSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred cceeeccCCcceeEEEEecCcccce--eeccccceeeeEEcCC------CceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 3466778999999999875543222 3433 3788999999 899999999999999998643 2 22322 2
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEe----CCCCCceeeeee
Q 000473 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLR----GTASHSMFDHFC 728 (1471)
Q Consensus 667 gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg-~~~~~l~----gH~~~v~~~~~~ 728 (1471)
...+.=.+..|+.....+|++..| |++.|||++.. .+.+..+ .|.+.+-.++|.
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qd--------g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQD--------GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecC--------CcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 223344688999999999999999 99999999874 3333322 244444444454
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=43.30 Aligned_cols=38 Identities=34% Similarity=0.478 Sum_probs=33.6
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEE
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWD 607 (1471)
++...+.+|...|+++.|++. +..+++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD---------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC---------CCEEEEecCCCeEEEcC
Confidence 456777889999999999986 68999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=66.84 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=74.8
Q ss_pred EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000473 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1471)
Q Consensus 603 I~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~ 682 (1471)
|++.+..+-+....+..|+..|..++|+|.+ ...+..++.+..|+|.|+++..++.++..| ..+++++|.-|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 5555554444455667788899999999983 337889999999999999999999999888 7799999988765
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000473 683 -YIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 683 -~L~sgs~D~sg~~D~~gtV~VWDi~tg~ 710 (1471)
+|..|-.+ |.|+|||++.-+
T Consensus 249 h~IYaGl~n--------G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQN--------GMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccC--------ceEEEEEccCCC
Confidence 55555555 999999998643
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.071 Score=63.30 Aligned_cols=208 Identities=16% Similarity=0.122 Sum_probs=127.1
Q ss_pred ceEEEEEEcCCCCeEEEEeCCCcEEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCcccccccccccccccc
Q 000473 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1471)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~ 96 (1471)
.-|+.+..+-- +++.+++.||.++.|--....+ ..-+..+..|-+.|..|+
T Consensus 10 d~i~hv~~tka-~fiiqASlDGh~KFWkKs~isG--vEfVKhFraHL~~I~sl~-------------------------- 60 (558)
T KOG0882|consen 10 DVITHVFPTKA-KFIIQASLDGHKKFWKKSRISG--VEFVKHFRAHLGVILSLA-------------------------- 60 (558)
T ss_pred ceeeeEeeehh-heEEeeecchhhhhcCCCCccc--eeehhhhHHHHHHHHhhh--------------------------
Confidence 45777777644 7999999999999998652001 223334557888888886
Q ss_pred cccCCCCEEEEEeC-CCeEEEEEcCCCeEEEeeeCCCCCCCCcEEEEcCCCC---eEEEEcceecccCCccccccccccc
Q 000473 97 KSSLDNGALISACT-DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP---RYVCIGCCFIDTNQLSDHHSFESVE 172 (1471)
Q Consensus 97 ~~s~d~~~LaSas~-DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~---~ll~~G~~~id~~~~~~~h~~~~i~ 172 (1471)
.+-|+.++.|.++ |..+++.|+.+-..+.-.++. .-|..+.-....+ .+++++.. +
T Consensus 61 -~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---~lPg~a~wv~skGd~~s~IAVs~~--~-------------- 120 (558)
T KOG0882|consen 61 -VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV---DLPGFAEWVTSKGDKISLIAVSLF--K-------------- 120 (558)
T ss_pred -ccccceeEeeccCcccceeEEEeeccchhhhcccc---cCCCceEEecCCCCeeeeEEeecc--c--------------
Confidence 5677888999888 999999999877666556665 4455554333222 35555543 0
Q ss_pred ccccccccCCCCCCCCCceEEEEeCcceEEEEEeecCccccCCeEEEEEeeecCCCCceeEEEEeCCCcEEEEECCCCCC
Q 000473 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1471)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s~~~s~~~i~~~~~~~~~~d~~~~~llvas~dG~V~vW~l~~~~~ 252 (1471)
.+.+.++|......-...+- ..+..+|..+-..+.+ +..+..+.+|.|+-|..+.. -
T Consensus 121 ----------------sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa~-----Ds~vSiD~~gmVEyWs~e~~-~ 177 (558)
T KOG0882|consen 121 ----------------SGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQAG-----DSAVSIDISGMVEYWSAEGP-F 177 (558)
T ss_pred ----------------CCCcEEECCcCCcCccceec-ccccCceEEEEeeccc-----cceeeccccceeEeecCCCc-c
Confidence 26677777776543222222 3334458877777443 44666688999999998852 0
Q ss_pred cccccCCCc--ccCC-CcccceeccCCcccCceEEEEecCCcEEEEEeCCeE
Q 000473 253 LDREEGNGL--CKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301 (1471)
Q Consensus 253 ~~~~~~~~l--~~~e-~~i~~v~~~~~~~~~~~~vs~s~~g~~l~~~~~~~~ 301 (1471)
+ ....+-. +++| ...+... .......+.|+|+|..+.+.+.++-
T Consensus 178 q-fPr~~l~~~~K~eTdLy~f~K----~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 178 Q-FPRTNLNFELKHETDLYGFPK----AKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred c-Cccccccccccccchhhcccc----cccCccceEEccccCcccccCcccE
Confidence 0 0111000 1222 1111111 1123367889999999999887763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.25 Score=60.22 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=72.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
+..++.++.|+.+..+|..+|+.+....... .+.+ +|. ..++.++.++.|+.+..||.++|+.+..+.....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~---~p~----v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS---PPL----VANGLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec---CCE----EECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 5677788899999999999999887665332 2221 121 0134677778899999999999998877654322
Q ss_pred CcE-----EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 671 YPA-----KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 671 ~V~-----~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
... ..... +..++.+..+ |.++.+|.++|+.+...
T Consensus 177 ~~~~~~~~sp~~~--~~~v~~~~~~--------g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 177 ALTLRGSASPVIA--DGGVLVGFAG--------GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred ceeecCCCCCEEE--CCEEEEECCC--------CEEEEEEccCCCEeeee
Confidence 110 11111 3467777776 89999999999876543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.67 Score=57.53 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=84.5
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCC-EEEEEECC--CcEEEEECCCCceEEEEeccCCCEEEEEECCCC
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQ 633 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~-~L~SGs~D--gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~ 633 (1471)
..+++... +....+.+....|+|| ++ ++++.+.+ ..|.++|+.+++. ..+..+.+......|+||
T Consensus 220 l~tg~~~~-lt~~~g~~~~~~~SPD---------G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD- 287 (419)
T PRK04043 220 LYTGKKEK-IASSQGMLVVSDVSKD---------GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED- 287 (419)
T ss_pred CCCCcEEE-EecCCCcEEeeEECCC---------CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC-
Confidence 33444433 3334556677889998 54 55555544 4677778887764 445444443345579999
Q ss_pred CCCCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCC-CCCCCEEEEEECCCC
Q 000473 634 TEHPWSDCFLSVGE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT-SDAVDVLFIWDVKTG 709 (1471)
Q Consensus 634 ~~~~~~~~l~S~s~-Dg--sV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~-~D~~gtV~VWDi~tg 709 (1471)
|+.++-.+. .+ .|.+.|+.+++..+.... ... ...|+|||++|+..+..-... +.+...|++.|+.+|
T Consensus 288 -----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 288 -----DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred -----CCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 876665553 23 577788888877544322 111 248999999998877541000 001147899999888
Q ss_pred eEEEEEeC
Q 000473 710 ARERVLRG 717 (1471)
Q Consensus 710 ~~~~~l~g 717 (1471)
+. +.++.
T Consensus 360 ~~-~~LT~ 366 (419)
T PRK04043 360 YI-RRLTA 366 (419)
T ss_pred Ce-EECCC
Confidence 64 44543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.2 Score=50.75 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=88.1
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECC--------CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCE
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~D--------gtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~ 641 (1471)
....+.+++.|+ +++.++.... +.|..++.. ++.. .+.........++|+|+ ++.
T Consensus 85 ~~~~ND~~vd~~---------G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~d------g~~ 147 (246)
T PF08450_consen 85 FNRPNDVAVDPD---------GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPD------GKT 147 (246)
T ss_dssp TEEEEEEEE-TT---------S-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETT------SSE
T ss_pred cCCCceEEEcCC---------CCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCc------chh
Confidence 456889999987 7777776644 457777776 5543 33334556789999999 775
Q ss_pred E-EEEeCCCcEEEEECCCC-c------EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000473 642 F-LSVGEDFSVALASLETL-R------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 642 l-~S~s~DgsV~lWdl~t~-~------~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~ 713 (1471)
| ++-+..+.|..+++... . ....+....+.+-.+++..+|++.++.... +.|.++|.+ |+++.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--------~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--------GRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--------TEEEEEETT-SCEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--------CEEEEECCC-ccEEE
Confidence 5 56677888999998532 1 122233333347889999999877765555 899999987 99988
Q ss_pred EEeCCCCCceeeee
Q 000473 714 VLRGTASHSMFDHF 727 (1471)
Q Consensus 714 ~l~gH~~~v~~~~~ 727 (1471)
.+.-.....+.+.|
T Consensus 219 ~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 219 EIELPVPRPTNCAF 232 (246)
T ss_dssp EEE-SSSSEEEEEE
T ss_pred EEcCCCCCEEEEEE
Confidence 88766445555544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.2 Score=48.89 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=86.7
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec-------cCCCEEEEEECCCCCCCCCCCEEEEE
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------HVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~-------H~~~V~~l~fspd~~~~~~~~~l~S~ 645 (1471)
=.-++|+|| +.+|+.+...|+|+++|+.. ..+..+.. -...|..+.|.+......|...|+..
T Consensus 46 WRkl~WSpD---------~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 46 WRKLAWSPD---------CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred heEEEECCC---------CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 456899998 89999999999999999974 44444332 13567788887766566666678888
Q ss_pred eCCCcEEEEECC-----CCcEEEEec---CCCCCcEEEEEcCCCCEEEEEEcCCCCCCC---CCCEEEEEECCCCeE
Q 000473 646 GEDFSVALASLE-----TLRVERMFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSD---AVDVLFIWDVKTGAR 711 (1471)
Q Consensus 646 s~DgsV~lWdl~-----t~~~l~~~~---gh~~~V~~v~~spdg~~L~sgs~D~sg~~D---~~gtV~VWDi~tg~~ 711 (1471)
..+|.++=+-+. ..+.-+.|. .+...|.++.++|..+.|++|+......+. ...-+..|.+-++.+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence 888887766542 233334443 246689999999998888777654111000 012477887776654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.074 Score=64.56 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=87.9
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC------
Q 000473 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 647 (1471)
Q Consensus 574 ~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~------ 647 (1471)
+-+.|+|. |.+|+|--.-| |.+|--.+...+++| .|. .|.-+.|||. .++|+|=+.
T Consensus 214 tyv~wSP~---------GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWSPK---------GTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEecCC---------ceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCc------cceEEEecCCccccC
Confidence 56789998 89999987766 789987777777887 465 4899999999 788888543
Q ss_pred -----CCcEEEEECCCCcEEEEecCCCC--Cc-EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000473 648 -----DFSVALASLETLRVERMFPGHPN--YP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 648 -----DgsV~lWdl~t~~~l~~~~gh~~--~V-~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~ 712 (1471)
-..+.|||+.+|...+.|+.... .+ .-..||.|++|+|.-..| +|.|++.....++
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~---------sisIyEtpsf~ll 339 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN---------SISIYETPSFMLL 339 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc---------eEEEEecCceeee
Confidence 26789999999999988876322 22 356899999999987665 8999998775443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.17 Score=64.90 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC---------CCcEEEEECCCCcE
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE---------DFSVALASLETLRV 661 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~---------DgsV~lWdl~t~~~ 661 (1471)
++++.+|..-|+|.+-|.++-+.+++|..|++.|..+... |+.|+++|. |..|+|||++..+.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--------CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 7999999999999999999999999999999999887764 668888864 77899999999887
Q ss_pred EEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 662 ERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg-~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
+.-+.-+.++ .-+.|+|.- ..+++.+.. |...+-|.
T Consensus 259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~s--------Gq~q~vd~ 295 (1118)
T KOG1275|consen 259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQS--------GQFQFVDT 295 (1118)
T ss_pred cCCcccccCc-hhhhhcccccceEEEEecc--------cceeeccc
Confidence 7666555443 557788753 356666665 78888773
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.56 Score=60.17 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=106.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCcc-EEEEEEecCCCCcccCcCCCEEEEEECCC----
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDC---- 601 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~-V~~la~spd~~~~~~~~~~~~L~SGs~Dg---- 601 (1471)
.++.|+.+|.|.+ ++ .+.+..+.++.|... |..+ ++-+ ...+|++-+.|.
T Consensus 37 ~vvigt~~G~V~~--Ln--------------~s~~~~~~fqa~~~siv~~L-~~~~--------~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 37 SVVIGTADGRVVI--LN--------------SSFQLIRGFQAYEQSIVQFL-YILN--------KQNFLFSVGEDEQGNP 91 (933)
T ss_pred eEEEeeccccEEE--ec--------------ccceeeehheecchhhhhHh-hccc--------CceEEEEEeecCCCCc
Confidence 7999999999988 33 112334556666666 4443 3332 146888887775
Q ss_pred -cEEEEECCCC------ceE--EEEec-----cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC---C-CcEEE
Q 000473 602 -SIRIWDLGSG------NLI--TVMHH-----HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---T-LRVER 663 (1471)
Q Consensus 602 -tI~lWDl~tg------~~l--~~~~~-----H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~---t-~~~l~ 663 (1471)
.+++||++.- .++ +.+.. ...++.+++++-+ -.++|.|-.||.|.++.-+ + |....
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED------LKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc------ccEEEEEecCcEEEEEcCcchhcccccee
Confidence 4899999732 344 23333 2457888999888 7899999999999988532 1 11112
Q ss_pred EecCCCCCcEEEEEcCCCCE-EEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeeee
Q 000473 664 MFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCK 729 (1471)
Q Consensus 664 ~~~gh~~~V~~v~~spdg~~-L~sgs~D~sg~~D~~gtV~VWDi~tg~-~~~~l~gH~~~v~~~~~~~ 729 (1471)
-......+|+.+++..++.- ++++.. ..|.+|.+.... ....+..|....-+..||+
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt---------~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATT---------EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEec---------ceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence 22233568999999988876 444444 479999987444 2455777776666666664
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.057 Score=66.76 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE-EEEEcCCCCEEEEEEcCCCCCCCCCCE
Q 000473 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1471)
Q Consensus 622 ~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~-~v~~spdg~~L~sgs~D~sg~~D~~gt 700 (1471)
..|..+.|+|. -..+|.+-.+|.|.+.-+. .+.+.+++-|.-.++ +++|.|||+.|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 35788999998 7899999999999999888 777788887777777 99999999999999999 99
Q ss_pred EEEEECCCCeEEEE
Q 000473 701 LFIWDVKTGARERV 714 (1471)
Q Consensus 701 V~VWDi~tg~~~~~ 714 (1471)
|++-|+++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999887655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.7 Score=50.95 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=82.5
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEEC-----CCcEEEEECC-CCceEEEEeccCCCEEEEEECCCCCCC
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-----DCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEH 636 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~-----DgtI~lWDl~-tg~~l~~~~~H~~~V~~l~fspd~~~~ 636 (1471)
-+.|+||. .|++| +++|.+.=. .|.|-|||.. +.+.+..|..|.-.-..+.+.||
T Consensus 49 gRHFyGHg------~fs~d---------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD---- 109 (305)
T PF07433_consen 49 GRHFYGHG------VFSPD---------GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD---- 109 (305)
T ss_pred CCEEecCE------EEcCC---------CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC----
Confidence 35677884 67887 788887643 4789999998 66677788777666667777777
Q ss_pred CCCCEEEEE------------------eCCCcEEEEECCCCcEEEE--e-------------------------------
Q 000473 637 PWSDCFLSV------------------GEDFSVALASLETLRVERM--F------------------------------- 665 (1471)
Q Consensus 637 ~~~~~l~S~------------------s~DgsV~lWdl~t~~~l~~--~------------------------------- 665 (1471)
++.|+.+ ..+.++.+.|..+|+.+.. +
T Consensus 110 --G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 110 --GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred --CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 4333332 1122333444444433222 1
Q ss_pred ------------------c-------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000473 666 ------------------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 666 ------------------~-------gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~ 716 (1471)
. .-.+++-+|++++++.++++.|-- .+.+.+||..+|+++....
T Consensus 188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-------Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-------GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-------CCEEEEEECCCCCEeeccc
Confidence 0 112467788999999888777765 3899999999999887644
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.029 Score=65.79 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=91.9
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~ 640 (1471)
++.+.+.+|...|..++|+|. ...++..++.+.+|++.|+++......+..| ..+++++|.-++ .+
T Consensus 184 kssq~lp~~g~~IrdlafSp~--------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~h 249 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPF--------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----RH 249 (463)
T ss_pred chhhcccccchhhhhhccCcc--------ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----cc
Confidence 345567788899999999997 2458999999999999999999998888888 789999999885 67
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEecC--CCCCcEEE------EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 641 CFLSVGEDFSVALASLETLRV-ERMFPG--HPNYPAKV------VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 641 ~l~S~s~DgsV~lWdl~t~~~-l~~~~g--h~~~V~~v------~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
.+..|-..|.|.++|++..+- +..+.+ -..+|..+ +..+-|.+|+....+ +..|++.
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~----------l~f~ei~ 315 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV----------LQFYEIV 315 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh----------hhhhhhh
Confidence 899999999999999986432 222222 11223322 345567777766665 6677664
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.3 Score=48.83 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=95.1
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccCcCCCEEEEEEC
Q 000473 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1471)
Q Consensus 523 f~P~--~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~la~spd~~~~~~~~~~~~L~SGs~ 599 (1471)
|+|+ .++++...|+|++ ++++... ...+.. ...+.+ -..+|..+.|.+-..++ +-...|+.-..
T Consensus 51 WSpD~tlLa~a~S~G~i~v--fdl~g~~-----lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~---~ws~ELlvi~Y 117 (282)
T PF15492_consen 51 WSPDCTLLAYAESTGTIRV--FDLMGSE-----LFVIPP---AMSFPGDLSDAIAGLIFLEYKKSA---QWSYELLVINY 117 (282)
T ss_pred ECCCCcEEEEEcCCCeEEE--Eecccce-----eEEcCc---ccccCCccccceeeeEeecccccc---ccceeEEEEec
Confidence 4444 7999999999999 4433211 111110 001111 23567777775532111 11224555556
Q ss_pred CCcEEEEECCC-----CceEEEEec---cCCCEEEEEECCCCCCCCCCCEEEEEe-CCC----------cEEEEECCCCc
Q 000473 600 DCSIRIWDLGS-----GNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVG-EDF----------SVALASLETLR 660 (1471)
Q Consensus 600 DgtI~lWDl~t-----g~~l~~~~~---H~~~V~~l~fspd~~~~~~~~~l~S~s-~Dg----------sV~lWdl~t~~ 660 (1471)
+|.++=+-+.. .+..+.|.- +...|.++.++|. .+.|+.|| ... -+.-|-+-++.
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~------h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK------HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS 191 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC------CCEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence 76666555422 233444432 4678999999998 45444443 222 23445432211
Q ss_pred E---------------------EE-----Eec---CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 661 V---------------------ER-----MFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 661 ~---------------------l~-----~~~---gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
+ .+ .+. .....|..|..||||..|++...+ |.|.+|++.+-.+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s--------G~lsLW~iPsL~~ 263 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS--------GSLSLWEIPSLRL 263 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC--------CeEEEEecCcchh
Confidence 0 01 111 124578999999999999999998 9999999988766
Q ss_pred EEEEe
Q 000473 712 ERVLR 716 (1471)
Q Consensus 712 ~~~l~ 716 (1471)
.+...
T Consensus 264 ~~~W~ 268 (282)
T PF15492_consen 264 QRSWK 268 (282)
T ss_pred hcccc
Confidence 65544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.9 Score=55.67 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=88.9
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECC----CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000473 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 570 ~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~----tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~ 645 (1471)
..++.+++++.+ -+.+|.|-.||.|....-+ .|....-...-..+|+.+++..+ +..++-+
T Consensus 125 ~~p~s~l~Vs~~---------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d------~~s~lFv 189 (933)
T KOG2114|consen 125 PSPASSLAVSED---------LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD------GKSVLFV 189 (933)
T ss_pred CCcceEEEEEcc---------ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC------CceeEEE
Confidence 346888999986 6899999999999987532 12211222234579999999888 6654555
Q ss_pred eCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCC
Q 000473 646 GEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTAS 720 (1471)
Q Consensus 646 s~DgsV~lWdl~t~~~-l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~-gH~~ 720 (1471)
..-..|.+|.+....+ ...+..|...+.|..+++.-..+++++. .-|++||......--.+. ||..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCCcceeeeecCCCeE
Confidence 5667899999984442 4556777788999999887664666655 379999987544444454 7763
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.9 Score=42.97 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=65.5
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~ 652 (1471)
|+++++..-. .+| ...|+.||.|+.||+|+= .+.+..+..+ ..|+++.-... ..|+.+-.+|+|.
T Consensus 2 V~al~~~d~d--~dg---~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFD--GDG---ENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecC--CCC---cceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-------CEEEEEecCCEEE
Confidence 6677765420 112 478999999999999984 4677777654 46777776553 5799999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEc-CCC---CEEEEEEcC
Q 000473 653 LASLETLRVERMFPGHPNYPAKVVWD-CPR---GYIACLCRD 690 (1471)
Q Consensus 653 lWdl~t~~~l~~~~gh~~~V~~v~~s-pdg---~~L~sgs~D 690 (1471)
+|+-.. +. ....... .+.++.+. .++ .-|++|-.+
T Consensus 67 vY~~~~-Rl-WRiKSK~-~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 67 VYDRSQ-RL-WRIKSKN-QVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEeCcc-ee-eeeccCC-CeEEEEEEcCCCCCceEEEEEecC
Confidence 997532 22 2223222 35566553 332 267888777
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1 Score=57.45 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++++.||++.|.... +.+...++. -..++.+++++|+- .+...+.+++||.-| +.+.
T Consensus 85 y~asCS~DGkv~I~sl~---------------~~~~~~~~d-f~rpiksial~Pd~----~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLF---------------TDDEITQYD-FKRPIKSIALHPDF----SRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred eEEEecCCCcEEEeecc---------------CCccceeEe-cCCcceeEEeccch----hhhhhhheeecCcce-EEEe
Confidence 79999999999984332 112222222 23578999999973 233467899999998 6665
Q ss_pred ECCC-CceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC------CcEEEEEc
Q 000473 607 DLGS-GNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------YPAKVVWD 678 (1471)
Q Consensus 607 Dl~t-g~~l-~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~------~V~~v~~s 678 (1471)
.-+- |... ..+..-.|+|.++.|. |+++|=++.+| |+++|..+++.+..++.... ....+.|.
T Consensus 144 er~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 144 ERNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred hhhhhcCccceeeecCccceEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 5321 1111 1355567899999995 55888877665 89999999887766653323 34678898
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 679 pdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
++.+ |+.|=.| +|+|..++.
T Consensus 215 ~~~~-LVIGW~d---------~v~i~~I~~ 234 (846)
T KOG2066|consen 215 DEDR-LVIGWGD---------SVKICSIKK 234 (846)
T ss_pred CCCe-EEEecCC---------eEEEEEEec
Confidence 7665 4444443 899998873
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.27 Score=61.10 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=69.0
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCc
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFS 650 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~-~l~fspd~~~~~~~~~l~S~s~Dgs 650 (1471)
.+.-+.|+|. -.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|| |+.++.|-.||+
T Consensus 22 ~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGT 85 (665)
T ss_pred ceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCCe
Confidence 4677889996 7899999999999999987 888889987888888 9999999 999999999999
Q ss_pred EEEEECCCCcEEEEe
Q 000473 651 VALASLETLRVERMF 665 (1471)
Q Consensus 651 V~lWdl~t~~~l~~~ 665 (1471)
|++.|.+++..+..+
T Consensus 86 I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEEccCCCceecc
Confidence 999999998876653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.52 E-value=9.3 Score=45.00 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=84.6
Q ss_pred CceEEEEEEcC-CCCeEEEEeCCCc-EEEEEccCCCCCceeeeEEecccccceeEeeeccccccccCccccccccccccc
Q 000473 16 SHRVTATSALT-QPPTLYTGGSDGS-ILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 16 ~h~Vtava~Sp-Dg~~LaTGs~DG~-I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1471)
+.+.-.++++| ++..+|-+=.-|+ ..+||..+ ++ ..+.+.. ++|| |+ +
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~--~~~~~~a-----------------~~gR--HF------y 53 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQ--LLQRLWA-----------------PPGR--HF------Y 53 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---Cc--eeeEEcC-----------------CCCC--EE------e
Confidence 34556778888 4555666666666 56788774 22 1111110 0111 00 0
Q ss_pred ccccccCCCCEEEEEe-----CCCeEEEEEcCCC-eEEEeeeCCCCCCC-CcEEEEcCCCCeE--EEEcceecccCCccc
Q 000473 94 VMGKSSLDNGALISAC-----TDGVLCVWSRSSG-HCRRRRKLPPWVGS-PSVICTLPSNPRY--VCIGCCFIDTNQLSD 164 (1471)
Q Consensus 94 ~~~~~s~d~~~LaSas-----~DG~I~VWdv~~G-~ci~~~~l~~~~g~-~~~i~~~s~~~~l--l~~G~~~id~~~~~~ 164 (1471)
.=|.||+|+.+|.+.- ..|.|-|||+..+ +.+...... |. |-.+..+ +|++. ++.|.- .+.
T Consensus 54 GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~---GIGPHel~l~-pDG~tLvVANGGI--~Th---- 123 (305)
T PF07433_consen 54 GHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH---GIGPHELLLM-PDGETLVVANGGI--ETH---- 123 (305)
T ss_pred cCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC---CcChhhEEEc-CCCCEEEEEcCCC--ccC----
Confidence 1123788888898854 3588999999833 334434333 32 3344444 45533 344432 111
Q ss_pred ccccccccccccccccCCCCCCCCCceEEEEeCcceEEEEEeec-CccccCCeEEEEEe
Q 000473 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFH-GNLSIGPWKFMDVV 222 (1471)
Q Consensus 165 ~h~~~~i~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~tl~s-~~~s~~~i~~~~~~ 222 (1471)
.-..++-..+..|...+...|..+++++....- ...+--.|.-+++.
T Consensus 124 -----------pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 124 -----------PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred -----------cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 001122334667889999999999999877431 11222236778766
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=93.17 E-value=12 Score=46.00 Aligned_cols=225 Identities=15% Similarity=0.146 Sum_probs=115.9
Q ss_pred cEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC---------C----------CCCCccccCC---------cce
Q 000473 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH---------N----------SPGASLKVNS---------HVS 562 (1471)
Q Consensus 511 ~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~---------d----------~~~~~~d~~s---------~~~ 562 (1471)
.|+++.+-.+.. -+++|...|.+.|++|..-... + .++.+-|+.. ..+
T Consensus 3 ~v~~vs~a~~t~----Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P 78 (395)
T PF08596_consen 3 SVTHVSFAPETL----ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP 78 (395)
T ss_dssp -EEEEEEETTTT----EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred eEEEEEecCCCc----eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence 466666444444 7999999999999998531110 0 0122222211 134
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEE--ec------cCCCEEEEEECCCCC
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HH------HVAPVRQIILSPPQT 634 (1471)
Q Consensus 563 ~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~--~~------H~~~V~~l~fspd~~ 634 (1471)
...+....+.|++++.+. --+++.|..||.+.|-|++....+..- .. ....|+++.|..- .
T Consensus 79 ~~l~~~~~g~vtal~~S~----------iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm-~ 147 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNSD----------IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM-T 147 (395)
T ss_dssp EEEE---S-SEEEEEE-B----------TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE-E
T ss_pred hhheeccCCcEeEEecCC----------CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE-e
Confidence 444556689999999863 579999999999999999877766542 12 2235778877631 1
Q ss_pred CCCCC---CEEEEEeCCCcEEEEECC--C-CcE----EEEecCCCCCcEEEE-EcCC---------------------CC
Q 000473 635 EHPWS---DCFLSVGEDFSVALASLE--T-LRV----ERMFPGHPNYPAKVV-WDCP---------------------RG 682 (1471)
Q Consensus 635 ~~~~~---~~l~S~s~DgsV~lWdl~--t-~~~----l~~~~gh~~~V~~v~-~spd---------------------g~ 682 (1471)
..-++ -++..|...|.+.+|.+. . ++- ......+.++|..+. ++.+ ..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 11112 378888889999999774 1 221 112224556666554 3221 12
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeeccccccccceEEcCCccccccceeeccCCceEe
Q 000473 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1471)
Q Consensus 683 ~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH~~~v~~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~tir~ 762 (1471)
++++.+ + ..+||+...+++..+... .....+...+ . +..-.......++.+..||.++.
T Consensus 228 ~vVvvS-e--------~~irv~~~~~~k~~~K~~--~~~~~~~~~~----v------v~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 228 YVVVVS-E--------SDIRVFKPPKSKGAHKSF--DDPFLCSSAS----V------VPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp EEEEE--S--------SEEEEE-TT---EEEEE---SS-EEEEEEE----E------EEEE-EEEEEEEEEEETTSEEEE
T ss_pred EEEEEc-c--------cceEEEeCCCCcccceee--ccccccceEE----E------EeecccCCceEEEEEECCCcEEE
Confidence 554444 3 589999998877655443 2222222112 0 00000223445677888999999
Q ss_pred ecccccccc
Q 000473 763 SQIQNDERG 771 (1471)
Q Consensus 763 w~l~~~~~~ 771 (1471)
+.|..++..
T Consensus 287 ~SLP~Lkei 295 (395)
T PF08596_consen 287 YSLPSLKEI 295 (395)
T ss_dssp EETTT--EE
T ss_pred EECCCchHh
Confidence 988665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.035 Score=68.35 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=103.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE----ECCCc
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG----SMDCS 602 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SG----s~Dgt 602 (1471)
.++.|..+|.|.+.....- + . ....+..+|....++++|.+- +.++|+.| -.|..
T Consensus 72 IlavG~atG~I~l~s~r~~-----h------d--Ss~E~tp~~ar~Ct~lAwneL--------Dtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHP-----H------D--SSAEVTPGYARPCTSLAWNEL--------DTNHLAAGLDKHRNDSS 130 (783)
T ss_pred hhhhccccCceEEeecCCc-----c------c--ccceecccccccccccccccc--------cHHHHHhhhhhhcccCC
Confidence 6889999999998554310 0 1 123445678889999999874 35677777 35678
Q ss_pred EEEEECCCC--ceE--EEEec-cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000473 603 IRIWDLGSG--NLI--TVMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 603 I~lWDl~tg--~~l--~~~~~-H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~ 677 (1471)
+.+||+.++ .+. ..|.+ ......+++|..+ ...+.+|...+.++++|++..- .+...-....+..+..
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITV 203 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhh-hhhhhhhhhhccccee
Confidence 999999876 222 22332 2334456666555 6789999999999999998321 1111112334566777
Q ss_pred cC-CCCEEEEEEcCCCCCCCCCCEEEEEEC-CCC-eEEEEEeCCC----CCceeeeeee
Q 000473 678 DC-PRGYIACLCRDHSRTSDAVDVLFIWDV-KTG-ARERVLRGTA----SHSMFDHFCK 729 (1471)
Q Consensus 678 sp-dg~~L~sgs~D~sg~~D~~gtV~VWDi-~tg-~~~~~l~gH~----~~v~~~~~~~ 729 (1471)
+| .++|+++-. | |.|.+||. +.- .+++.+.-.. .+...+.+||
T Consensus 204 dp~~~nY~cs~~-d--------g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-D--------GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred cCCCCCceeccc-c--------CceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 88 677876544 5 89999993 322 2222222111 1355667885
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.18 Score=63.78 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCEEEEEE----CCCcEEEEECCCCceEEE--EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000473 591 NEVLVSGS----MDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1471)
Q Consensus 591 ~~~L~SGs----~DgtI~lWDl~tg~~l~~--~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~ 664 (1471)
..+++.++ .-|+|.++- ++|++-+. ...| +++++|+|. .-.++.|-.-|.+.+|...+.+....
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH------HHHHhhccccceeEEEecCCceeeee
Confidence 45555544 346777774 56764322 2223 456888887 66788888889999999988887777
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 665 ~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
...|..+|.-+.|||+|..|+++..- |.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~--------g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNP--------GSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCC--------ceeEEEEee
Confidence 77899999999999999999998877 999999775
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.1 Score=46.00 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=81.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
..+++-||..+.+.--|..+|++...-.- ...|.+-+.- - |+.++-|+..+.+.+.+.++|.....|..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 67888888899888889998887643211 1223322221 2 77899999999999999999988887764333
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
-=......+++..+.+|+.| ++.|.-|.++..++...
T Consensus 95 vk~~a~~d~~~glIycgshd--------~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHD--------GNFYALDPKTYGCVYKS 131 (354)
T ss_pred hccceEEcCCCceEEEecCC--------CcEEEecccccceEEec
Confidence 11344567899999999999 99999999998877653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.23 Score=55.06 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=60.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.+++|..+|.|.++.|.+... ..+. ...-...|-|.-..-+ ++.+..+++.|+.|+.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~------~~d~--------~~s~~e~i~~~Ip~~~--------~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGA------HSDR--------VCSGEESIDLGIPNGR--------DSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eEEeecccceEEEecCCccch------HHHh--------hhcccccceecccccc--------ccceeEEeccCCceeee
Confidence 799999999999988872111 0011 1111122333221111 25688999999999999
Q ss_pred ECCCCceEEEEeccC-CCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECC
Q 000473 607 DLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 657 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~-~~V~~l~fspd~~~~~~~~~l~S~--s~DgsV~lWdl~ 657 (1471)
++..++.+...-.|. .++..+..... +..++.. |.|..++.|++.
T Consensus 130 n~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 999888777776676 34444443333 3444444 555555555554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.51 Score=59.43 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=80.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEec
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMFP 666 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l-~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~---l~~~~ 666 (1471)
+++++-|+.-|.+.+++-..++.. ....+-.+.+....++++ ..++|.|+..|.|.++-++.+.+ ...-+
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 789999999999999998877654 333344556666778887 77888888899999998875422 12212
Q ss_pred ---CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 667 ---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 667 ---gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
.|...|++++|++++..+++|..- |+|..-.+.+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~--------Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQ--------GKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCC--------ceEEEEEech
Confidence 367789999999999999998776 9998887776
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.9 Score=56.73 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=90.6
Q ss_pred cccCCcceEEEEecCCcc-EEEEEEecCCCCcccC-cCCCEEEEEECCCcEEEEECCCC-ceEEEEec----cCCCEEEE
Q 000473 555 LKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGW-SFNEVLVSGSMDCSIRIWDLGSG-NLITVMHH----HVAPVRQI 627 (1471)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~-V~~la~spd~~~~~~~-~~~~~L~SGs~DgtI~lWDl~tg-~~l~~~~~----H~~~V~~l 627 (1471)
-|++.|+.+....-|... |..++ |+. +.. -...-.+.|=.+..+..||.+-. ..+..-.. ......|+
T Consensus 509 mDLe~GKVV~eW~~~~~~~v~~~~--p~~---K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 509 MDLERGKVVEEWKVHDDIPVVDIA--PDS---KFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred EecCCCcEEEEeecCCCcceeEec--ccc---cccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 367788888888877654 66554 321 000 01345667778889999999853 22211111 23346677
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 628 ~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
+-..+ .+||.|+.+|.|||||--..+....+++-..+|..|..+.||++|++.|.. .+.+++.
T Consensus 584 aTt~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t---------yLlLi~t 646 (794)
T PF08553_consen 584 ATTED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT---------YLLLIDT 646 (794)
T ss_pred EecCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc---------eEEEEEE
Confidence 66654 489999999999999954444556678888999999999999999999985 6777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.25 E-value=13 Score=42.26 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=71.6
Q ss_pred EEEEEEe-cCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEec-----cCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000473 573 VLCLAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-----HVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 573 V~~la~s-pd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~-----H~~~V~~l~fspd~~~~~~~~~l~S~s 646 (1471)
...+++. ++ +.++++ ..++ +.++|..+++....+.. .......+++.|+ |+..++-.
T Consensus 42 ~~G~~~~~~~---------g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~------G~ly~t~~ 104 (246)
T PF08450_consen 42 PNGMAFDRPD---------GRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD------GNLYVTDS 104 (246)
T ss_dssp EEEEEEECTT---------SEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT------S-EEEEEE
T ss_pred CceEEEEccC---------CEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC------CCEEEEec
Confidence 6677777 43 444444 4444 55569998865433332 3356789999999 88888766
Q ss_pred CC--------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 647 ED--------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 647 ~D--------gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
.. +.|..++.. ++...... .....+.++|+|+++.|++.... .+.|+.+++.
T Consensus 105 ~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~-------~~~i~~~~~~ 164 (246)
T PF08450_consen 105 GGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF-------NGRIWRFDLD 164 (246)
T ss_dssp CCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT-------TTEEEEEEEE
T ss_pred CCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc-------cceeEEEecc
Confidence 54 457777777 55544433 34567899999999988765543 2889999985
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=17 Score=41.29 Aligned_cols=93 Identities=9% Similarity=-0.098 Sum_probs=63.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~ 670 (1471)
+++++-|...+.+.+-+.++|.....|..-..-=.+-...++ +..+..++.|++....|.++..++...+-..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVykskcgG~ 136 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG 136 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC------CceEEEecCCCcEEEecccccceEEecccCCc
Confidence 688999999999999999999888777543321122234566 88999999999999999999999877543322
Q ss_pred CcEEEEEcCCCCEEEEEEc
Q 000473 671 YPAKVVWDCPRGYIACLCR 689 (1471)
Q Consensus 671 ~V~~v~~spdg~~L~sgs~ 689 (1471)
--.+-+..|....|..+..
T Consensus 137 ~f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred eeccceecCCCceEEEEec
Confidence 2223344453333333333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.48 E-value=10 Score=51.12 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=94.6
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccC
Q 000473 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGW 588 (1471)
Q Consensus 510 ~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~la~spd~~~~~~~ 588 (1471)
..|.++.+..+.. .++.+..+|.|.+.+-. +.. ..+-| -.+.|.+..|+||
T Consensus 69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~e---------------t~~--~eivg~vd~GI~aaswS~D------- 120 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN----SICVITALGDIILVDPE---------------TLE--LEIVGNVDNGISAASWSPD------- 120 (1265)
T ss_pred cceEEEEEecccc----eEEEEecCCcEEEEccc---------------ccc--eeeeeeccCceEEEeecCC-------
Confidence 4566666544443 78889999999985322 111 11222 2457999999998
Q ss_pred cCCCEEEEEECCCcEEEEEC----CCC-------------------ceEEEEeccCC---------------------CE
Q 000473 589 SFNEVLVSGSMDCSIRIWDL----GSG-------------------NLITVMHHHVA---------------------PV 624 (1471)
Q Consensus 589 ~~~~~L~SGs~DgtI~lWDl----~tg-------------------~~l~~~~~H~~---------------------~V 624 (1471)
+++++-.+.+.++.+-+- -.. +.-..|+|..+ .=
T Consensus 121 --ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 121 --EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred --CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 888888888877766432 111 11123332211 01
Q ss_pred EEEEECCCCCCCCCCCEEEEE----eCC-CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000473 625 RQIILSPPQTEHPWSDCFLSV----GED-FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1471)
Q Consensus 625 ~~l~fspd~~~~~~~~~l~S~----s~D-gsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~g 699 (1471)
++|.|.-| |++|+.. -.+ +.|++||-+ |..-.+-..-.+-=.+++|.|.|..+++-..+ ++| +
T Consensus 199 ~~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~sd--~ 266 (1265)
T KOG1920|consen 199 TSISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TSD--S 266 (1265)
T ss_pred ceEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CCC--C
Confidence 23666666 8888872 224 899999976 43322211112223579999999999886655 233 5
Q ss_pred EEEEEECCCCe
Q 000473 700 VLFIWDVKTGA 710 (1471)
Q Consensus 700 tV~VWDi~tg~ 710 (1471)
.|.++. ++|-
T Consensus 267 ~IvffE-rNGL 276 (1265)
T KOG1920|consen 267 DIVFFE-RNGL 276 (1265)
T ss_pred cEEEEe-cCCc
Confidence 799987 4554
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.48 E-value=11 Score=37.86 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=59.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.|+.|++|..|+|++=+ ..+..+.. ++.|++|.... +..++-|-.+|+|.++
T Consensus 17 eLlvGs~D~~IRvf~~~-----------------e~~~Ei~e-~~~v~~L~~~~----------~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD-----------------EIVAEITE-TDKVTSLCSLG----------GGRFAYALANGTVGVY 68 (111)
T ss_pred eEEEecCCcEEEEEeCC-----------------cEEEEEec-ccceEEEEEcC----------CCEEEEEecCCEEEEE
Confidence 79999999999994322 33444443 45788887665 5779999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEE-CCCCCCCCCC-CEEEEEeCCCcEE
Q 000473 607 DLGSGNLITVMHHHVAPVRQIIL-SPPQTEHPWS-DCFLSVGEDFSVA 652 (1471)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~f-spd~~~~~~~-~~l~S~s~DgsV~ 652 (1471)
+- .+.+.+.+.... +.++.+ ..+. +| ..|++|-.+|.|-
T Consensus 69 ~~--~~RlWRiKSK~~-~~~~~~~D~~g----dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DR--SQRLWRIKSKNQ-VTSMAFYDING----DGVPELIVGWSNGKVE 109 (111)
T ss_pred eC--cceeeeeccCCC-eEEEEEEcCCC----CCceEEEEEecCCeEE
Confidence 85 334455544443 555554 3331 12 2688888888764
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.47 Score=52.67 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCEEEEEECCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~t-g~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~ 669 (1471)
+.-++.|+.||.|.+|...- |.....+..-..+|.+.. |. ...+.+.++++.|+.|+.|+.+-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~---~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PN---GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecc--cc---ccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 56789999999999998762 111111111122233222 22 1125689999999999999999888887777776
Q ss_pred -CCcEEEEEcCCCCEEEEE--EcCCCCCCCCCCEEEEEECC
Q 000473 670 -NYPAKVVWDCPRGYIACL--CRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 670 -~~V~~v~~spdg~~L~sg--s~D~sg~~D~~gtV~VWDi~ 707 (1471)
.++........+++++.+ +.| ..++.|+++
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d--------~~~k~W~ve 177 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHD--------RVLKKWNVE 177 (238)
T ss_pred CCCcceeEEecCCceEEeeccccc--------hhhhhcchh
Confidence 344444444445555554 444 555666554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=91.30 E-value=75 Score=43.72 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=67.3
Q ss_pred eeEecCCC---CCCceEEEEEEcCCCCeEEEEeCCCcEEEE----EccCCCCCceeeeEEecccccceeEeeeccccccc
Q 000473 6 VACIWSGT---PPSHRVTATSALTQPPTLYTGGSDGSILWW----SFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVS 78 (1471)
Q Consensus 6 ~~~lw~~~---~p~h~Vtava~SpDg~~LaTGs~DG~I~lW----dl~~~~~~~~~~~~~L~GH~~~Vt~La~c~~~~~s 78 (1471)
+.+=|... .+..+|.++.+.+|...|+.+..+|.|.+. |... ...+.+. -=...|.|.+
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---~~~E~VG---~vd~GI~a~~-------- 127 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---DEIEIVG---SVDSGILAAS-------- 127 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---ceeEEEE---EEcCcEEEEE--------
Confidence 34447654 556889999999999999999999999999 4442 2222222 2345788887
Q ss_pred cCcccccccccccccccccccCCCCEEEEEeCCCeEEEEEcCCCeEEEeeeCC
Q 000473 79 RDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1471)
Q Consensus 79 ~dg~~~~~~~~~~~~~~~~~s~d~~~LaSas~DG~I~VWdv~~G~ci~~~~l~ 131 (1471)
+|||+..|+-+..+|+|.+-+ .+-..+....+.
T Consensus 128 -------------------WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~ 160 (928)
T PF04762_consen 128 -------------------WSPDEELLALVTGEGNLLLMT-RDFDPISEVPLD 160 (928)
T ss_pred -------------------ECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecC
Confidence 799999999999999998887 455555554443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.76 Score=52.48 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=97.7
Q ss_pred cccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecC-----CccEEEEEEec
Q 000473 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH-----TGAVLCLAAHR 580 (1471)
Q Consensus 506 ~~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH-----~~~V~~la~sp 580 (1471)
..|+..++++.+.++.. .++ ...|-.|.+|+.+.. |... .+--++.| +.-|++-.|||
T Consensus 169 NaH~yhiNSiS~NsD~e----t~l-SaDdLrINLWnl~i~---D~sF---------nIVDiKP~nmeeLteVItSaeFhp 231 (460)
T COG5170 169 NAHPYHINSISFNSDKE----TLL-SADDLRINLWNLEII---DGSF---------NIVDIKPHNMEELTEVITSAEFHP 231 (460)
T ss_pred ccceeEeeeeeecCchh----eee-eccceeeeecccccc---CCce---------EEEeccCccHHHHHHHHhhcccCH
Confidence 45778888888666665 333 345555555332211 1111 12223334 34578889999
Q ss_pred CCCCcccCcCCCEEEEEECCCcEEEEECCCCce----------------EEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000473 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL----------------ITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1471)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~----------------l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S 644 (1471)
.. ..++.=.+..|.|++-|++...+ ..-|..-...|..+.|+++ |+++++
T Consensus 232 ~~--------cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~n------gryIls 297 (460)
T COG5170 232 EM--------CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN------GRYILS 297 (460)
T ss_pred hH--------cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCC------CcEEEE
Confidence 62 56777778899999999983221 1112334567889999998 889887
Q ss_pred EeCCCcEEEEECCC-CcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEEcC
Q 000473 645 VGEDFSVALASLET-LRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 645 ~s~DgsV~lWdl~t-~~~l~~~~gh~~------------~V---~~v~~spdg~~L~sgs~D 690 (1471)
-+. -+|++||++. ..++.+++-|.. .| ..+.|+.|.+.+++|+..
T Consensus 298 Rdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 298 RDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred ecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 753 5899999974 457777766642 22 356788888888777665
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=3 Score=51.25 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=70.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEE-EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ-IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~-l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~ 669 (1471)
+..++.+..++.+.-+|..+|+.+..+......+.. ..-+|. ..+..++.++.|+.+..+|.++|+.+.......
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 355666788999999999999998877543211100 001221 013356667789999999999998766543111
Q ss_pred C-------CcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000473 670 N-------YPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1471)
Q Consensus 670 ~-------~V~~v~~sp--dg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~ 714 (1471)
. ....+.-+| .+..+++++.+ |.++..|..+|+.+-.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVALDLRSGQIVWK 281 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEEECCCCCEEEe
Confidence 0 011111122 25667777777 8999999999987654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=90.98 E-value=9 Score=47.21 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=96.9
Q ss_pred ccCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--Ee------cCCccEEEEEE
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FL------GHTGAVLCLAA 578 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~------gH~~~V~~la~ 578 (1471)
...+.|++++. ++.. .++.|+++|.+.|.+.. ....+.. +. .....|+++.|
T Consensus 84 ~~~g~vtal~~-S~iG----Fvaigy~~G~l~viD~R---------------GPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 84 AKQGPVTALKN-SDIG----FVAIGYESGSLVVIDLR---------------GPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp --S-SEEEEEE--BTS----EEEEEETTSEEEEEETT---------------TTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred ccCCcEeEEec-CCCc----EEEEEecCCcEEEEECC---------------CCeEEeeccccccccccccccCeeEEEE
Confidence 34678999875 5666 49999999999995543 1111111 11 12346888888
Q ss_pred ecCCCCcccCcCCCEEEEEECCCcEEEEECCC---Cce----EEEEeccCCCEEEEE-ECCCCCC--------------C
Q 000473 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GNL----ITVMHHHVAPVRQII-LSPPQTE--------------H 636 (1471)
Q Consensus 579 spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~t---g~~----l~~~~~H~~~V~~l~-fspd~~~--------------~ 636 (1471)
.-.. -.+..|..-.|+.|...|.+.+|.+.- +.. ......+.++|..+. ++.+... .
T Consensus 144 ~vm~-~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 144 SVMT-LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEE--TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEe-cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 6431 111223456899999999999998751 221 222235667777766 4332110 0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE-----cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-----DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 637 ~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~-----spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
..-+.++.+..+..+|++.+-+.+..+...........+.+ ...+..|++-..| |.|+++.+..-+.
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~--------G~i~i~SLP~Lke 294 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN--------GSIRIYSLPSLKE 294 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT--------SEEEEEETTT--E
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC--------CcEEEEECCCchH
Confidence 11123555566889999999888776554422222334445 2356678888887 9999999998777
Q ss_pred EEEEeCC
Q 000473 712 ERVLRGT 718 (1471)
Q Consensus 712 ~~~l~gH 718 (1471)
+..+.-+
T Consensus 295 i~~~~l~ 301 (395)
T PF08596_consen 295 IKSVSLP 301 (395)
T ss_dssp EEEEE-S
T ss_pred hhcccCC
Confidence 7766644
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.47 Score=60.21 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=62.6
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~ 652 (1471)
+++++|||. .-+|++|=.-|.+.+|...+.+....-..|..+|.-+.|+|+ |.+++|+..-|.|.
T Consensus 62 atSLCWHpe---------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 62 ATSLCWHPE---------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSVH 126 (1416)
T ss_pred hhhhccChH---------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCceeE
Confidence 677999996 678888988899999999887776677789999999999999 99999999999999
Q ss_pred EEECC
Q 000473 653 LASLE 657 (1471)
Q Consensus 653 lWdl~ 657 (1471)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99875
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.84 Score=38.44 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred ecCCCCCCceEEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 000473 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFS 46 (1471)
Q Consensus 9 lw~~~~p~h~Vtava~SpDg~~LaTGs~DG~I~lWdl~ 46 (1471)
+++.+.-..+|+++.++|....||.|..||+|.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45667777889999999999999999999999999986
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=11 Score=46.41 Aligned_cols=98 Identities=8% Similarity=-0.052 Sum_probs=66.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCC-EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP-VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~-V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~ 669 (1471)
+..+..++.|+.+..+|..+|+.+.....-... ..+..+ . +..+..++.||.+..+|.++|+.+....-..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--Y------NGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--E------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 566777889999999999999876544321111 111111 1 4578889999999999999999887765433
Q ss_pred CCcEE-EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 670 NYPAK-VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 670 ~~V~~-v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
..+.. ..+ .++.|++++.| |.|+.++.
T Consensus 366 ~~~~s~P~~--~~~~l~v~t~~--------G~l~~~~~ 393 (394)
T PRK11138 366 SGFLSEPVV--ADDKLLIQARD--------GTVYAITR 393 (394)
T ss_pred CcceeCCEE--ECCEEEEEeCC--------ceEEEEeC
Confidence 33322 122 25578888888 99988764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.5 Score=57.65 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=70.0
Q ss_pred CCEEEEEECCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000473 591 NEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg-~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~ 669 (1471)
+.+++-|+..|.|-..|.... .+.+.=..-.++|++++|+-+ |..++.|-.+|.|.+||...++.++.+..|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 567888888888888887532 111222223579999999999 9999999999999999999999999888777
Q ss_pred CCcEE---EEEcCCCCEEEEEEcC
Q 000473 670 NYPAK---VVWDCPRGYIACLCRD 690 (1471)
Q Consensus 670 ~~V~~---v~~spdg~~L~sgs~D 690 (1471)
.+.+. +.|..++..++++..-
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCC
Confidence 66544 4556666666665544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.1 Score=59.03 Aligned_cols=81 Identities=10% Similarity=0.006 Sum_probs=62.6
Q ss_pred CEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000473 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 640 ~~l~S~s~DgsV~lWdl~t~-~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l~gH 718 (1471)
..++.|++-|.|...|+... ++...-..-.++|++++|+-+|.++..|-.+ |-|.+||+.++..++.+.-|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~--------G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD--------GHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC--------CcEEEEEccCCcceeeeeec
Confidence 35677777788888887652 2222222235689999999999999988887 99999999999999999999
Q ss_pred CCCceeeeee
Q 000473 719 ASHSMFDHFC 728 (1471)
Q Consensus 719 ~~~v~~~~~~ 728 (1471)
.+++..+-+.
T Consensus 172 ~ap~t~vi~v 181 (1206)
T KOG2079|consen 172 GAPVTGVIFV 181 (1206)
T ss_pred CCccceEEEE
Confidence 8888776444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.28 Score=60.86 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=76.3
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1471)
Q Consensus 572 ~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV 651 (1471)
.+.+++|-.+ .+++++|.....+.++|++. .+.......+..|..+.+.|-. ++++|+-. |+.|
T Consensus 156 gqns~cwlrd---------~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~i 219 (783)
T KOG1008|consen 156 GQNSVCWLRD---------TKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDI 219 (783)
T ss_pred CccccccccC---------cchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCC-----CCceeccc-cCce
Confidence 4556777654 78899999999999999872 2333344455567777888832 67888776 9999
Q ss_pred EEEE-CCCC-cEEEEecCCCC----CcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 652 ALAS-LETL-RVERMFPGHPN----YPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 652 ~lWd-l~t~-~~l~~~~gh~~----~V~~v~~spdg~-~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
.+|| .+.- .+++.+...+. .+..++|.|... .+++...| .++|+.+|+.
T Consensus 220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~ 275 (783)
T KOG1008|consen 220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC 275 (783)
T ss_pred eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence 9999 3332 22233222222 488999999765 45555555 2799999985
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.41 E-value=9.4 Score=47.73 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=56.4
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1471)
Q Consensus 573 V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~ 652 (1471)
-....|.+. ..++.-....+|.++.-...+....+... ..+..+-. |.+|+..+ ++.|.
T Consensus 71 g~~~vw~~~----------n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---------G~LL~~~~-~~~i~ 129 (443)
T PF04053_consen 71 GLSFVWSSR----------NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---------GNLLGVKS-SDFIC 129 (443)
T ss_dssp -SEEEE-TS----------SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----------SSSEEEEE-TTEEE
T ss_pred eeEEEEecC----------ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---------CcEEEEEC-CCCEE
Confidence 345677763 44666666888999633222221223221 12444432 44555554 44899
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000473 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 653 lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~ 707 (1471)
+||+++++.++.+... +|..|.|++++.+++..+.+ +++|++..
T Consensus 130 ~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~---------~i~il~~~ 173 (443)
T PF04053_consen 130 FYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD---------SIYILKYN 173 (443)
T ss_dssp EE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----------SEEEEEE-
T ss_pred EEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---------eEEEEEec
Confidence 9999999999998743 38999999999999988876 78888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=85.83 E-value=1.8 Score=36.43 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000473 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 669 ~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~ 711 (1471)
...|..++|+|..++|+.+..| |.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~--------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTED--------GEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECC--------CeEEEEEC-CCcC
Confidence 3468999999999999999999 99999998 6654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=85.53 E-value=9 Score=50.76 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=64.9
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE---EecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCc
Q 000473 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1471)
Q Consensus 526 ~~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~---l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1471)
....+|-.+..+.. ||.... ..+.+.. .........|++-.. ..+||.||.+|.
T Consensus 543 e~tflGls~n~lfr--iDpR~~-----------~~k~v~~~~k~Y~~~~~Fs~~aTt~----------~G~iavgs~~G~ 599 (794)
T PF08553_consen 543 EQTFLGLSDNSLFR--IDPRLS-----------GNKLVDSQSKQYSSKNNFSCFATTE----------DGYIAVGSNKGD 599 (794)
T ss_pred CceEEEECCCceEE--eccCCC-----------CCceeeccccccccCCCceEEEecC----------CceEEEEeCCCc
Confidence 35677877777666 553221 1111110 112334566776543 578999999999
Q ss_pred EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000473 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1471)
Q Consensus 603 I~lWDl~tg~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl 656 (1471)
||++|--..+....|.+-+.||..|..+.| |++++..+ +..+.|++.
T Consensus 600 IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 600 IRLYDRLGKRAKTALPGLGDPIIGIDVTAD------GKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEeecccchhhhhcCCCCCCCeeEEEecCC------CcEEEEee-cceEEEEEE
Confidence 999994322233445567889999999999 88777665 556777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.03 E-value=6.2 Score=50.23 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=72.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~-~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~l 605 (1471)
.++.|+.-|.+.+++-. .++. .....|-.+.+..+.++++ ..+++.|+..|.|.+
T Consensus 47 ~l~~GsS~G~lyl~~R~---------------~~~~~~~~~~~~~~~~~~~~vs~~---------e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRH---------------TGEMRKLKNEGATGITCVRSVSSV---------EYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEecccceEEEEecC---------------chhhhcccccCccceEEEEEecch---------hHhhhhhcCCceEEe
Confidence 69999999999984322 1111 1112233344445556765 788899999999999
Q ss_pred EECCCCceE-----EEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000473 606 WDLGSGNLI-----TVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 606 WDl~tg~~l-----~~~~-~H~~~V~~l~fspd~~~~~~~~~l~S~s~DgsV~lWdl~t 658 (1471)
+-+..+..- ..+. .|...|+++.|+++ +..+.+|..-|.|.+-.+.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEech
Confidence 988764321 1121 37789999999999 99999999999999888877
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=84.24 E-value=21 Score=45.30 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=75.0
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEeccCCC--EEEEEECCCCCCCCCCCEEEEEe---------CCCcEEEEECCCCc
Q 000473 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLR 660 (1471)
Q Consensus 592 ~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~--V~~l~fspd~~~~~~~~~l~S~s---------~DgsV~lWdl~t~~ 660 (1471)
..++.++.|+.|.-+|.++|+.+.++...... -..+.-+|.- .+..++.++ .++.+.-+|.++|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 67778889999999999999999877654321 0111112210 023444443 36788999999999
Q ss_pred EEEEecCCCCC--------------------c-EEEEEcCCCCEEEEEEcCCCCC------------CCCCCEEEEEECC
Q 000473 661 VERMFPGHPNY--------------------P-AKVVWDCPRGYIACLCRDHSRT------------SDAVDVLFIWDVK 707 (1471)
Q Consensus 661 ~l~~~~gh~~~--------------------V-~~v~~spdg~~L~sgs~D~sg~------------~D~~gtV~VWDi~ 707 (1471)
.+..+...... | ...+..+.+..++.++.| ++ .+.++.|+-.|.+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~--g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN--GSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC--CCCCccCCccCCCCCCceeeEEEEcCC
Confidence 88776542110 1 123455566778887765 11 1112489999999
Q ss_pred CCeEEEEEe
Q 000473 708 TGARERVLR 716 (1471)
Q Consensus 708 tg~~~~~l~ 716 (1471)
||+..-...
T Consensus 265 tG~~~W~~~ 273 (488)
T cd00216 265 TGKVKWFYQ 273 (488)
T ss_pred CCCEEEEee
Confidence 999887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=83.97 E-value=42 Score=42.67 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCcEEEEECCCCceEEEEeccCCC--------------------EE-EEEECCCCCCCCCCCEEEEEeCCC--------
Q 000473 599 MDCSIRIWDLGSGNLITVMHHHVAP--------------------VR-QIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1471)
Q Consensus 599 ~DgtI~lWDl~tg~~l~~~~~H~~~--------------------V~-~l~fspd~~~~~~~~~l~S~s~Dg-------- 649 (1471)
.++.+...|..+|+.+..+...... |+ ..++.+. +..+..++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4678999999999988777542111 10 1222222 45666666554
Q ss_pred ----------cEEEEECCCCcEEEEecCCCCCc------EEEEEc----CCCC---EEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 650 ----------SVALASLETLRVERMFPGHPNYP------AKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 650 ----------sV~lWdl~t~~~l~~~~gh~~~V------~~v~~s----pdg~---~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
.|.-+|.++|+.+-.+..-.... ....+. -++. .+++++.+ |.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~--------G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN--------GFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC--------ceEEEEEC
Confidence 78889999999987764211111 001111 1232 57777777 99999999
Q ss_pred CCCeEEEEE
Q 000473 707 KTGARERVL 715 (1471)
Q Consensus 707 ~tg~~~~~l 715 (1471)
++|+.+-..
T Consensus 319 ~tG~~~W~~ 327 (488)
T cd00216 319 TTGKLISAR 327 (488)
T ss_pred CCCcEeeEe
Confidence 999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.13 E-value=0.67 Score=59.48 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=73.4
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeccCCCEEEEE-----------ECCCCCCCCCCCEEEEEeCCCcEEEEECC--
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII-----------LSPPQTEHPWSDCFLSVGEDFSVALASLE-- 657 (1471)
Q Consensus 591 ~~~L~SGs~DgtI~lWDl~tg~~l~~~~~H~~~V~~l~-----------fspd~~~~~~~~~l~S~s~DgsV~lWdl~-- 657 (1471)
..++.-+-.+++|++-...+... ..|.+|...+..++ ++|| |..|+..+.||.|++|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpD------Gtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPD------GTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCC------CcEEEEeecCCccceeeeeee
Confidence 46677777888998866654322 34455766555443 4666 9999999999999999763
Q ss_pred ---CCcEEEEecCCCC-CcEEEEEcCCC---------CEEEEEEcCCCCCCCCCCEEEEEECCCCeEE--------EEEe
Q 000473 658 ---TLRVERMFPGHPN-YPAKVVWDCPR---------GYIACLCRDHSRTSDAVDVLFIWDVKTGARE--------RVLR 716 (1471)
Q Consensus 658 ---t~~~l~~~~gh~~-~V~~v~~spdg---------~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~--------~~l~ 716 (1471)
..+|++.-..|.. +-.|.-++.+. .+++++.. .+..+++|.-...+|+ ....
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd-------~nre~k~w~~a~w~Cll~~~~d~v~iV~ 340 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD-------VNREEKFWAEAPWQCLLDKLIDGVQIVG 340 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc-------CCcceeEeeccchhhhhhhcccceEeec
Confidence 3345555556653 22222222211 24444433 2477999987766654 2333
Q ss_pred CCCCCceeeeee
Q 000473 717 GTASHSMFDHFC 728 (1471)
Q Consensus 717 gH~~~v~~~~~~ 728 (1471)
.|...+.....|
T Consensus 341 p~~~~v~~~~~~ 352 (1283)
T KOG1916|consen 341 PHDGEVTDLSMC 352 (1283)
T ss_pred CCCccccchhhh
Confidence 455455544444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=82.99 E-value=64 Score=37.22 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=88.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEECCCcEEEE
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~Gs~DG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~~~~~L~SGs~DgtI~lW 606 (1471)
.++.|+++| +.++..+ ......+.. +...|..+...|+ -+.|+.=+ |+.+.++
T Consensus 9 ~L~vGt~~G-l~~~~~~--------------~~~~~~~i~--~~~~I~ql~vl~~---------~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLS--------------DPSKPTRIL--KLSSITQLSVLPE---------LNLLLVLS-DGQLYVY 61 (275)
T ss_pred EEEEEECCC-EEEEEec--------------CCccceeEe--ecceEEEEEEecc---------cCEEEEEc-CCccEEE
Confidence 699999999 7764431 011122222 2233999998886 34444443 5999999
Q ss_pred ECCCCceEEE--------------EeccCCCEEEEE-ECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-----cEEEEec
Q 000473 607 DLGSGNLITV--------------MHHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFP 666 (1471)
Q Consensus 607 Dl~tg~~l~~--------------~~~H~~~V~~l~-fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~-----~~l~~~~ 666 (1471)
++..-..... -......+...+ -... .+...+.+...+.|.+|..... +..+.+.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEE
Confidence 9975443321 111223444444 1111 1445556666779999988653 4555554
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000473 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1471)
Q Consensus 667 gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~tg~~~~~l 715 (1471)
- ...+..++|. ++.++.|..+ ...+.|+.++.....+
T Consensus 137 l-p~~~~~i~~~--~~~i~v~~~~---------~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 L-PDPPSSIAFL--GNKICVGTSK---------GFYLIDLNTGSPSELL 173 (275)
T ss_pred c-CCCcEEEEEe--CCEEEEEeCC---------ceEEEecCCCCceEEe
Confidence 3 4678999998 6678888765 6899999988765544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.77 E-value=10 Score=46.97 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=87.0
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCc-CCCEEEEEECCCcEEEEECCCCc--eEEEEeccC----CCEEEEE
Q 000473 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS-FNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHV----APVRQII 628 (1471)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~la~spd~~~~~~~~-~~~~L~SGs~DgtI~lWDl~tg~--~l~~~~~H~----~~V~~l~ 628 (1471)
|++.|+.+....-|.. |+-+.+.|+. ++.+ ....-+.|=.|..|+=||.+-.. .+..-++|. ....|.+
T Consensus 362 DIE~GKIVeEWk~~~d-i~mv~~t~d~---K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a 437 (644)
T KOG2395|consen 362 DIERGKIVEEWKFEDD-INMVDITPDF---KFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA 437 (644)
T ss_pred ecccceeeeEeeccCC-cceeeccCCc---chhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee
Confidence 6777887777777766 6777777762 1100 01222445678889999987322 222222332 1234444
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000473 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 629 fspd~~~~~~~~~l~S~s~DgsV~lWdl~t~~~l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi 706 (1471)
-.. ..+++.||.+|.|||||--..+.-..++|-..+|..|..+.+|++|++.|.. .+.+-++
T Consensus 438 TT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t---------yLlLi~t 499 (644)
T KOG2395|consen 438 TTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT---------YLLLIDT 499 (644)
T ss_pred ecC-------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc---------EEEEEEE
Confidence 333 3489999999999999974444456788999999999999999999988875 6666654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=81.40 E-value=20 Score=46.19 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCcEEEEECCC----C-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEE-EEeCCCcEEEEECCCCcE------------
Q 000473 600 DCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVGEDFSVALASLETLRV------------ 661 (1471)
Q Consensus 600 DgtI~lWDl~t----g-~~l~~~~~H~~~V~~l~fspd~~~~~~~~~l~-S~s~DgsV~lWdl~t~~~------------ 661 (1471)
++.|.+.|..+ + +.+..+. -......+.++|| |++++ ++..+.+|.+.|+++.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 67899999988 3 3444443 3456788999999 77655 455699999999987552
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000473 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 662 l~~~~gh~~~V~~v~~spdg~~L~sgs~D~sg~~D~~gtV~VWDi~t 708 (1471)
+.+.+- .......+|+++|....+-.-| ..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~d--------sqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLD--------SQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEeec--------ceeEEEehHH
Confidence 333332 2235678999999877777777 8999999976
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1471 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1471 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.4 bits (137), Expect = 5e-09
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 547 RHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606
A L+ + HV + ++ T K L+SGS D +I++W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666
D+ +G + + H VR ++ H LS +D ++ + + R +
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLF------HSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
H ++ + + Y+ D + + +W+
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQT--------VKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.3 bits (134), Expect = 1e-08
Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 50/235 (21%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
+ GH V + H V+VS S D +I++WD +G+ + H
Sbjct: 10 KYALSGHRSPVTRVIFH---------PVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 623 PVRQIILSP------------------------------------PQTEHPWSDCFLSVG 646
V+ I + P D +S
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706
D ++ + ++T + F GH + V + IA D + V V +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-----VRVWVVATK 175
Query: 707 KTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761
+ A R R + S++ +GS + LL D T +
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 2e-06
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 23/170 (13%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHV 621
+ + + V HR + + ++ S S D ++R+W + + + H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 622 APVRQIILSPPQTEHPWSDC--------------FLSVGEDFSVALASLETLRVERMFPG 667
V I +P + S+ LS D ++ + + T G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
H N+ V++ +I D + L +WD K + L
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKT--------LRVWDYKNKRCMKTLNA 287
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.3 bits (121), Expect = 5e-07
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 16/141 (11%)
Query: 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638
V + + VSG+ D S ++WD+ G H + + I P
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF------PN 237
Query: 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSD 696
+ F + +D + L L + + V + + D +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN---- 293
Query: 697 AVDVLFIWDVKTGARERVLRG 717
+WD R VL G
Sbjct: 294 ----CNVWDALKADRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 21/149 (14%)
Query: 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616
V + RQ F GH + + +GS D + R++DL + +
Sbjct: 213 VREGMCRQTFTGHESDINAICFF---------PNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV 676
H +S L+ +DF+ + + GH N + +
Sbjct: 264 YSHDNIICGITSVSF----SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
+A D L IW+
Sbjct: 320 VTDDGMAVATGSWDSF--------LKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.3 bits (121), Expect = 6e-07
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650
+E ++SGS D + WD SGN + ++ H V + ++ + P + F + D
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379
Query: 651 VALASLETL 659
+ + +
Sbjct: 380 ARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (114), Expect = 3e-06
Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------HVAPVRQIILSPPQTEHPWSD 640
+ + +GS+D ++R+WD +G L+ + H V ++ +
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT------RDGQ 267
Query: 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR----TSD 696
+S D SV L +L+ + + +V + + ++ + + +
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 697 AVDVLFIWDVKTGARERVLRG 717
+ WD K+G +L+G
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 2e-05
Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 29/156 (18%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
+ GH +V + R + +VSGS+D S+++W+L + N + +
Sbjct: 248 ESGTGHKDSVYSVVFTRD---------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 624 VRQIILSPPQTE------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------Y 671
++ + + LS +D V ++ M GH N
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
A D IW K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCK--------ARIWKYK 386
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 23/172 (13%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
R GH +V+ + +++G+ D IR++D + + + H
Sbjct: 5 RTTLRGHMTSVITCLQFE----------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG 54
Query: 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682
V + + +S D +V + ++ +F GH + + +
Sbjct: 55 GVWALKYAH-------GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107
Query: 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMN 734
+ T L +W + + + + H +
Sbjct: 108 IKYIVTGSRDNT------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHH 620
S + GH V+ F +VSGS D ++++W +G + + H
Sbjct: 8 SPKVLKGHDDHVITC-----------LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56
Query: 621 VAPVRQIILSPPQTEHPWSDCF 642
V + +D
Sbjct: 57 TGGVWSSQMRDNIIISGSTDRT 78
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 16/159 (10%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
+ + + L H + + +VSGS+D SIR+WD+ +GN I + H +
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682
+ L + +S D +V + ++T + + G + + V
Sbjct: 219 LTSGMELKD--------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721
D + +WD+KTG R L S
Sbjct: 271 NFVITSSDDGT-------VKLWDLKTGEFIRNLVTLESG 302
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
+ V CL ++ +VSG D +I+IWD + ++ H V +
Sbjct: 13 ETSKGVYCLQYD-----------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 628 ILSPPQTEHPWSDCF 642
SD
Sbjct: 62 QYDERVIITGSSDST 76
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.004
Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 18/154 (11%)
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647
++ +VS S D +I++W+ + + ++ H + + +S
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--------QYRDRLVVSGSS 196
Query: 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
D ++ L +E R+ GH I D + +WD+
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK--------IKVWDLV 246
Query: 708 TGARERVLRGTASHSMFDHFCKGISMNSISGSVL 741
R GT + +
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI 280
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 3e-05
Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 10/130 (7%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHV 621
Q GH A+ L++ + + L S + I WD+ +G H
Sbjct: 5 DQVRYGHNKAITALSSS---------ADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 55
Query: 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR 681
+ I + S + ++ D
Sbjct: 56 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 115
Query: 682 GYIACLCRDH 691
+
Sbjct: 116 AACYKHIAIY 125
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 23/205 (11%), Positives = 50/205 (24%), Gaps = 30/205 (14%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI------------T 615
H + ++A N VS S D +++WD +
Sbjct: 12 AHDADIFSVSAC-----------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 675
HHV ++ I + + + + +
Sbjct: 61 SGLHHVDVLQAIERDAFE-----LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115
Query: 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 735
+ + R V T + S+S+ ++ + +
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 736 ISGSVLNGNTSVSSLLLPIHEDGTF 760
S + + +S + I E G
Sbjct: 176 TVESPMTPSQFATS--VDISERGLI 198
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 7e-04
Identities = 18/175 (10%), Positives = 30/175 (17%), Gaps = 18/175 (10%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH + L + L+SGS D I W S H +
Sbjct: 9 ISGHNKGITALTVNP-------------LISGSYDGRIMEWSSSSM-----HQDHSNLIV 50
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685
+ S Q S + + G
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 686 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740
R + + + + D +
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.002
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 579 HRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637
H + +++ + VS D + W G I + V +S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDIS------V 316
Query: 638 WSDCFLSVGEDFSVAL 653
++ D +
Sbjct: 317 DDKYIVTGSGDKKATV 332
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.002
Identities = 5/74 (6%), Positives = 16/74 (21%), Gaps = 12/74 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPV 624
+ + +L+ S D S+ ++ + + P+
Sbjct: 9 APKDYISDIKII---------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 625 RQIILSPPQTEHPW 638
+
Sbjct: 60 LCCNFIDNTDLQIY 73
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1471 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.85 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.74 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.72 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.72 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.69 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.67 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.2 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.09 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.94 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.69 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.13 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.06 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.22 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.32 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.11 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.67 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 93.4 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 92.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.76 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 91.68 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 88.95 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.8e-31 Score=217.75 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=127.8
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 58418999863156535999999996991999980454347999884335876168998258866899999127877656
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~ 587 (1471)
|...++++.+.+... .+++|+.||.+++|. ..+++....+ .|.+.|.+++|+|+
T Consensus 182 ~~~~v~~l~~s~~~~----~~~~~~~d~~v~i~d---------------~~~~~~~~~~-~~~~~i~~l~~~~~------ 235 (337)
T d1gxra_ 182 HTDGASCIDISNDGT----KLWTGGLDNTVRSWD---------------LREGRQLQQH-DFTSQIFSLGYCPT------ 235 (337)
T ss_dssp CSSCEEEEEECTTSS----EEEEEETTSEEEEEE---------------TTTTEEEEEE-ECSSCEEEEEECTT------
T ss_pred CCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC---------------CCCCEEECCC-CCCCCEEEEEECCC------
T ss_conf 111111012344432----112235665532111---------------1110000024-66661579997153------
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 76897999997899299998899946999802688789999889999999999999996999299998899928899517
Q 000473 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1471)
Q Consensus 588 ~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~g 667 (1471)
++++++|+.|+.+++||+.+++.. ....|...|+++.|+|+ ++.|++++.|+.|++||+.+++++..+.
T Consensus 236 ---~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~------g~~l~s~s~Dg~i~iwd~~~~~~~~~~~- 304 (337)
T d1gxra_ 236 ---GEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQSK- 304 (337)
T ss_dssp ---SSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred ---CCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEECC-
T ss_conf ---030000002564211111111100-00124565416999899------9999999489969999899997999926-
Q ss_pred CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 999819999949999999997589998899988999979
Q 000473 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 668 h~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi 706 (1471)
|...|.+++|+|++++|++++.| ++|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D--------~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECC--------CEEEEEEE
T ss_conf 99987999992799999999089--------96999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.7e-31 Score=216.97 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=66.7
Q ss_pred ECCCCCCC--------CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCC
Q ss_conf 50899998--------4299999908999699992899699998568999820224984055534357664033321357
Q 000473 9 IWSGTPPS--------HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRD 80 (1471)
Q Consensus 9 lw~~~~p~--------h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~ 80 (1471)
.|-+.||. ..|++++|+|++++|+||+.||+|++||+.+ .+....+.+|..+|++++
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-----~~~~~~~~~h~~~V~~~~---------- 66 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----GDFERTLKGHTDSVQDIS---------- 66 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----CCCCEEECCCSSCEEEEE----------
T ss_pred CCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CCEEEEEECCCCCEEEEE----------
T ss_conf 36898984489858888768999938989999993899299998999-----979999957888677776----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 5322222235666445546999989998379909999969991899
Q 000473 81 GKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1471)
Q Consensus 81 g~~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~ 126 (1471)
+++++.++++++.++.+.+|+....+...
T Consensus 67 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (317)
T d1vyhc1 67 -----------------FDHSGKLLASCSADMTIKLWDFQGFECIR 95 (317)
T ss_dssp -----------------ECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred -----------------EECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----------------30111101111111110111001111111
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-29 Score=204.53 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=128.9
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.+++|..||.+.+| +..++.+...+.+|.+.|++++|+|+ +++|++|+.|+.|++|
T Consensus 198 ~~~~~~~d~~v~i~---------------d~~~~~~~~~~~~h~~~i~~v~~~p~---------~~~l~s~s~d~~i~~~ 253 (340)
T d1tbga_ 198 LFVSGACDASAKLW---------------DVREGMCRQTFTGHESDINAICFFPN---------GNAFATGSDDATCRLF 253 (340)
T ss_dssp EEEEEETTTEEEEE---------------ETTTTEEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSCEEEE
T ss_pred EEEEEECCCEEEEE---------------ECCCCCEEEEEECCCCCEEEEEECCC---------CCEEEEEECCCEEEEE
T ss_conf 26876057369999---------------99999488999578898589999799---------8999999699969997
Q ss_pred ECCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEE
Q ss_conf 889994699980--268878999988999999999999999699929999889992889951799981999994999999
Q 000473 607 DLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1471)
Q Consensus 607 Dl~tg~~l~~l~--~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~L 684 (1471)
|+........+. .+..+|.++.|+|+ +.++++++.|+.|++||+.+++++..+.+|..+|++++|+|++.+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l 327 (340)
T d1tbga_ 254 DLRADQELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECSS------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEE
T ss_conf 5212211111112244574589999899------9999999797989999999993989984899978999990899999
Q ss_pred EEEECCCCCCCCCCCEEEEEE
Q ss_conf 999758999889998899997
Q 000473 685 ACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 685 vtgs~D~s~~~D~dg~I~IWD 705 (1471)
++|+.| |.|++||
T Consensus 328 ~s~s~D--------g~v~iWd 340 (340)
T d1tbga_ 328 ATGSWD--------SFLKIWN 340 (340)
T ss_dssp EEEETT--------SCEEEEC
T ss_pred EEECCC--------CEEEEEC
T ss_conf 999069--------9799859
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-29 Score=207.81 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=119.4
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.+++|+.||.|.++....... .... ........+|.+.|++++|+|+ +++|++|+.|+.|++|
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~------~~~~--~~~~~~~~~h~~~v~~l~~s~~---------~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFL------VERL--DSENESGTGHKDSVYSVVFTRD---------GQSVVSGSLDRSVKLW 281 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCE------EEEE--C------CCCSSCEEEEEECTT---------SSEEEEEETTSEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCC------CEEE--CCCCCCCCCCCCCEEEEEECCC---------CCEEEEEECCCCEEEE
T ss_conf 589973898199963455730------0010--2443334577898789999799---------9999999789928987
Q ss_pred ECCCCC------------EEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEE
Q ss_conf 889994------------69998026887899998899999999999999969992999988999288995179998199
Q 000473 607 DLGSGN------------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAK 674 (1471)
Q Consensus 607 Dl~tg~------------~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~ 674 (1471)
|+.++. +......|...|.++.|+|+ ++.+++++.|+.|++||+++++++..+.+|.+.|.+
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~ 355 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 51577643210134442001101245532789998899------999999969897999999999699999688997899
Q ss_pred EEE------CCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 999------499999999975899988999889999799
Q 000473 675 VVW------DCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 675 V~w------spdg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
+++ +|++.+|++|+.| |+|+||+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~D--------g~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGD--------CKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETT--------SEEEEEEEE
T ss_pred EEEECCCCCCCCCCEEEEEECC--------CEEEEEEEE
T ss_conf 9984674258999999999189--------979997621
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-29 Score=205.13 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=54.9
Q ss_pred CEEEEEECCCCEEEEECCCCCCCC-E-EEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 969999289969999856899982-0-22498405553435766403332135753222222356664455469999899
Q 000473 29 PTLYTGGSDGSILWWSFSDSSYSE-I-KPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALI 106 (1471)
Q Consensus 29 ~~LvTGs~DG~I~iWdl~~~~~~~-~-~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s~d~~~Lv 106 (1471)
.....+..++...+|+... ++ . .......+|+++|+|++ |++++.+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~H~~~V~~l~---------------------------fs~dg~~la 78 (388)
T d1erja_ 29 PDALKKQTNDYYILYNPAL---PREIDVELHKSLDHTSVVCCVK---------------------------FSNDGEYLA 78 (388)
T ss_dssp CTTSEEECSSCEEEECTTS---CCCEEEEEEEEEECSSCCCEEE---------------------------ECTTSSEEE
T ss_pred CCCCCCCCCCCEEEECCCC---CCCEEEEEEEECCCCCCEEEEE---------------------------ECCCCCEEE
T ss_conf 5322468897089868877---7620541076079999689999---------------------------999999999
Q ss_pred EEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 983799099999699918995508
Q 000473 107 SACTDGVLCVWSRSSGHCRRRRKL 130 (1471)
Q Consensus 107 Sas~DG~I~VWdv~sG~ci~~~~l 130 (1471)
|++ |++|++||+.+|+++.....
T Consensus 79 sg~-d~~i~iW~~~~~~~~~~~~~ 101 (388)
T d1erja_ 79 TGC-NKTTQVYRVSDGSLVARLSD 101 (388)
T ss_dssp EEC-BSCEEEEETTTCCEEEEECC
T ss_pred EEE-CCEEEEEEECCCCEEEEECC
T ss_conf 994-99489998136405766316
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.6e-30 Score=211.23 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=122.8
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 58418999863156535999999996991999980454347999884335876168998258866899999127877656
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~ 587 (1471)
|...|+++.+.++..+ .+++|+.||.|++|+ .++......+.+|...|+++.++|+
T Consensus 145 h~~~v~~v~~~~~~~~---~l~sgs~d~~i~i~d---------------~~~~~~~~~~~~~~~~i~~v~~~p~------ 200 (311)
T d1nr0a1 145 QARAMNSVDFKPSRPF---RIISGSDDNTVAIFE---------------GPPFKFKSTFGEHTKFVHSVRYNPD------ 200 (311)
T ss_dssp CSSCEEEEEECSSSSC---EEEEEETTSCEEEEE---------------TTTBEEEEEECCCSSCEEEEEECTT------
T ss_pred CCCCCCCCCCCCCCEE---EECCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCC------
T ss_conf 1111111111211101---200011221111111---------------1111111111111111111234764------
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEE-------CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 7689799999789929999889994699980-------268878999988999999999999999699929999889992
Q 000473 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1471)
Q Consensus 588 ~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~-------~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~ 660 (1471)
++++++|+.|+.|++||+.++.....+. +|.+.|+++.|+|+ ++.+++++.|++|++||+++++
T Consensus 201 ---~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~------~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 201 ---GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp ---SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTE
T ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCEEEEEECCCCC
T ss_conf ---2212111111111000124464112221111111002465321024788------9999999379969999999996
Q ss_pred EEEEECCCCC---CCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 8899517999---8199999499999999975899988999889999799
Q 000473 661 VERMFPGHPN---YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 661 ~i~~~~gh~~---~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
+++.+..|.. .+.++.| ++++|++++.| |.|++||++
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~d--------G~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIW--TKQALVSISAN--------GFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEE--CSSCEEEEETT--------CCEEEEETT
T ss_pred EEEEEECCCCCCCEEEEEEE--CCCEEEEEECC--------CEEEEEECC
T ss_conf 99999799986332999995--19999999899--------979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.3e-30 Score=212.02 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=73.4
Q ss_pred CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42999999089996999928996999985689998202249840555343576640333213575322222235666445
Q 000473 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1471)
Q Consensus 17 h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~ 96 (1471)
.+|+|++|+||+++||+|+.||.|.+||++ +.+...+..|.||..+|++++
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~---~~~~~~~~~l~gH~~~V~~l~-------------------------- 58 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKS---GNKWVQVHELKEHNGQVTGVD-------------------------- 58 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEE---TTEEEEEEEEECCSSCEEEEE--------------------------
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECC---CCCEEEEEEECCCCCCEEEEE--------------------------
T ss_conf 883899998999999999488989999888---997899999558899888999--------------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 5469999899983799099999699918995508
Q 000473 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1471)
Q Consensus 97 ~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l 130 (1471)
|++++++|+|++.|++++|||+.++.......+
T Consensus 59 -fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~ 91 (371)
T d1k8kc_ 59 -WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI 91 (371)
T ss_dssp -EETTTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred -ECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC
T ss_conf -979999999997999399986203321100122
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-28 Score=199.77 Aligned_cols=148 Identities=20% Similarity=0.315 Sum_probs=121.7
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 35999999996991999980454347999884335876168998258866899999127877656768979999978992
Q 000473 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1471)
Q Consensus 523 f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~Dgt 602 (1471)
+.+..+++|+.||.|++|. ...+.....+.+|...|.++.++ ++++++|+.|+.
T Consensus 185 ~~~~~l~s~~~dg~i~~~d---------------~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~s~d~~ 238 (342)
T d2ovrb2 185 FDGIHVVSGSLDTSIRVWD---------------VETGNCIHTLTGHQSLTSGMELK-----------DNILVSGNADST 238 (342)
T ss_dssp ECSSEEEEEETTSCEEEEE---------------TTTCCEEEEECCCCSCEEEEEEE-----------TTEEEEEETTSC
T ss_pred CCCCEEEEEECCCEEEEEE---------------CCCCEEEEEECCCCCCEEEEECC-----------CCEEEEECCCCE
T ss_conf 8999999995899399952---------------55653656741665320577068-----------999999748988
Q ss_pred EEEEECCCCCEEEEEEC---CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC-----CCCCCCEE
Q ss_conf 99998899946999802---68878999988999999999999999699929999889992889951-----79998199
Q 000473 603 IRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-----GHPNYPAK 674 (1471)
Q Consensus 603 I~iWDl~tg~~l~~l~~---H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~-----gh~~~V~~ 674 (1471)
|++||+...+....+.. |...+.++.++++ .+++++.|++|++||++++++++.+. +|...|++
T Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~ 310 (342)
T d2ovrb2 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310 (342)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEECSS--------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEECEEECCCCCC--------EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 999865544221112210001101000013798--------449990899899999999979899862347898897899
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 9994999999999758999889998899997999
Q 000473 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 675 V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~t 708 (1471)
++|+|++.++++|+.| |+.+ ..|++||...
T Consensus 311 v~~s~~~~~la~g~~d--Gt~~--~~l~~~Df~~ 340 (342)
T d2ovrb2 311 IRASNTKLVCAVGSRN--GTEE--TKLLVLDFDV 340 (342)
T ss_dssp EEECSSEEEEEEECSS--SSSC--CEEEEEECCC
T ss_pred EEECCCCCEEEEEECC--CCCE--EEEEEEECCC
T ss_conf 9987999899999689--9970--4899993899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-29 Score=204.71 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.7
Q ss_pred ECCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 50899998429999990899969999289969999856899982022498405553435766403332135753222222
Q 000473 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKA 88 (1471)
Q Consensus 9 lw~~~~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~ 88 (1471)
|-|++. .-|+|+.+ |+++|+||+.||+|++||+.+ .+++..+.||.++|++++
T Consensus 8 L~GH~~--~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~-----~~~~~~l~~H~~~V~~l~------------------ 60 (355)
T d1nexb2 8 LRGHMT--SVITCLQF--EDNYVITGADDKMIRVYDSIN-----KKFLLQLSGHDGGVWALK------------------ 60 (355)
T ss_dssp EECCSS--SCEEEEEE--ETTEEEEEETTTEEEEEETTT-----TEEEEEEECCSSCEEEEE------------------
T ss_pred ECCCCC--CCEEEEEE--CCCEEEEEECCCEEEEEECCC-----CCEEEEEECCCCCEEEEE------------------
T ss_conf 898378--86999998--899999991899099998999-----939999978999889999------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 356664455469999899983799099999699918995508
Q 000473 89 ENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1471)
Q Consensus 89 ~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l 130 (1471)
+++ +.+|+|++.||++++|+...+++......
T Consensus 61 ---------~s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 61 ---------YAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp ---------EET-TTEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred ---------ECC-CCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------869-99999996452443211111111111100
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-28 Score=199.92 Aligned_cols=164 Identities=17% Similarity=0.254 Sum_probs=130.2
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC---
Q ss_conf 84189998631565359999999969919999804543479998843358761689982588668999991278776---
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA--- 585 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~--- 585 (1471)
...+.+..+.++.. .+++|+.||.++++. ..+......+.+|...+.++.++++....
T Consensus 143 ~~~~~~~~~~~~~~----~l~~~~~d~~v~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 203 (317)
T d1vyhc1 143 REWVRMVRPNQDGT----LIASCSNDQTVRVWV---------------VATKECKAELREHRHVVECISWAPESSYSSIS 203 (317)
T ss_dssp SSCEEEEEECTTSS----EEEEEETTSCEEEEE---------------TTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred CCCCEEEECCCCCC----EEEEEECCCEEEEEE---------------ECCCEEEEEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 77630000166799----999992798299975---------------12540347882477873379986325641110
Q ss_pred --------CCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECC
Q ss_conf --------567689799999789929999889994699980268878999988999999999999999699929999889
Q 000473 586 --------KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 586 --------~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~ 657 (1471)
.....+.++++|+.|+.|++||+.+++++.++.+|..+|.++.++|+ ++.+++++.|+.|++||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYK 277 (317)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCT
T ss_pred CCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC------CCEEEEEECCCEEEEEECC
T ss_conf 3456303430258861475169978999888999688999688998799998799------9999999798949999999
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 992889951799981999994999999999758999889998899997
Q 000473 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 658 t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWD 705 (1471)
+++++..+.+|..+|++++|+|++++|++++.| |+|++||
T Consensus 278 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D--------g~i~iWd 317 (317)
T d1vyhc1 278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKVWE 317 (317)
T ss_dssp TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEEEC
T ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEC
T ss_conf 991999992899988999994999999999289--------9499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.2e-26 Score=187.35 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=128.7
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf 98258866899999127877656768979999978992999988999469998026887899998899999999999999
Q 000473 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1471)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S 644 (1471)
....+...+.+..+.+. ..++++|+.|+.|++||+.+++++.++.+|.++|++++|+|+ ++.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~------~~~l~s 243 (340)
T d1tbga_ 179 TFTGHTGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------GNAFAT 243 (340)
T ss_dssp EEECCSSCEEEEEECTT---------SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT------SSEEEE
T ss_pred CCCCCCEEEEEECCCCC---------CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC------CCEEEE
T ss_conf 12331015763001244---------212687605736999999999488999578898589999799------899999
Q ss_pred EECCCCEEEEECCCCCEEEEEC--CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 9699929999889992889951--79998199999499999999975899988999889999799990899982778881
Q 000473 645 VGEDFSVALASLETLRVERMFP--GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1471)
Q Consensus 645 ~s~DgsV~lwdl~t~~~i~~~~--gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~v 722 (1471)
++.|+.|++|+++....+..+. .+...+.+++|+|++.+|++|+.| |.|++||+.+++++.++.+|.+.+
T Consensus 244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~H~~~V 315 (340)
T d1tbga_ 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT--------SCEEEEETTTCCEEEEECCCSSCE
T ss_pred EECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEEEEECCCCCCE
T ss_conf 969996999752122111111122445745899998999999999797--------989999999993989984899978
Q ss_pred EEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 223364064101343428707743433522101599668612
Q 000473 723 MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 723 i~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~ 764 (1471)
..+.|++. +. .++..+.|++++.|+
T Consensus 316 ~~l~~s~d------------~~-----~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 316 SCLGVTDD------------GM-----AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTT------------SS-----CEEEEETTSCEEEEC
T ss_pred EEEEEECC------------CC-----EEEEECCCCEEEEEC
T ss_conf 99999089------------99-----999990699799859
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=5.2e-27 Score=191.59 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=113.2
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 9999996991999980454347999884335876168-998258866899999127877656768979999978992999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~i 605 (1471)
.+++|+.||.+.+|+.. +.... ....+|.+.|++++|+|+ +.++++|+.|+.|++
T Consensus 150 ~l~~g~~dg~i~~~d~~---------------~~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~d~~i~~ 205 (299)
T d1nr0a2 150 FVAVGGQDSKVHVYKLS---------------GASVSEVKTIVHPAEITSVAFSNN---------GAFLVATDQSRKVIP 205 (299)
T ss_dssp EEEEEETTSEEEEEEEE---------------TTEEEEEEEEECSSCEEEEEECTT---------SSEEEEEETTSCEEE
T ss_pred CCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCC
T ss_conf 11111111111111111---------------111111111111111111111111---------111111111111111
Q ss_pred EECCCCCEE---EEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEE--EEECCCC-CCCEEEEECC
Q ss_conf 988999469---998026887899998899999999999999969992999988999288--9951799-9819999949
Q 000473 606 WDLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE--RMFPGHP-NYPAKVVWDC 679 (1471)
Q Consensus 606 WDl~tg~~l---~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i--~~~~gh~-~~V~~V~wsp 679 (1471)
||+.++... ..+..|..+|++++|+|+ +.++++++.|+.|++||++++... .....|. ..+.++.| +
T Consensus 206 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~ 278 (299)
T d1nr0a2 206 YSVANNFELAHTNSWTFHTAKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-L 278 (299)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-C
T ss_conf 111111111111111111111111124666------451388828997999989999731489834898896899997-7
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 9999999975899988999889999799
Q 000473 680 PRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 680 dg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
++.+|++++.| ++|++||+.
T Consensus 279 ~~~~l~s~s~D--------~~i~iWdl~ 298 (299)
T d1nr0a2 279 NETTIVSAGQD--------SNIKFWNVP 298 (299)
T ss_dssp ETTEEEEEETT--------SCEEEEECC
T ss_pred CCCEEEEEECC--------CEEEEEECC
T ss_conf 98999999289--------979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.4e-25 Score=176.93 Aligned_cols=182 Identities=21% Similarity=0.291 Sum_probs=138.2
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.++.++.||.++++. .........+.+|...+.+..+ + +.++++|+.|+.|++|
T Consensus 149 ~~~~~~~d~~i~~~d---------------~~~~~~~~~~~~~~~~~~~~~~--~---------~~~l~s~~~dg~i~~~ 202 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWD---------------PETETCLHTLQGHTNRVYSLQF--D---------GIHVVSGSLDTSIRVW 202 (342)
T ss_dssp CEEEEETTSCEEEEE---------------GGGTEEEEEECCCSSCEEEEEE--C---------SSEEEEEETTSCEEEE
T ss_pred EEEEECCCCEEEEEE---------------CCCCEEEEEECCCCCCCCCCCC--C---------CCEEEEEECCCEEEEE
T ss_conf 024335898699952---------------5234366787275444210068--9---------9999999589939995
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCC---CCCCEEEEECCCCCE
Q ss_conf 88999469998026887899998899999999999999969992999988999288995179---998199999499999
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH---PNYPAKVVWDCPRGY 683 (1471)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh---~~~V~~V~wspdg~~ 683 (1471)
|+..++++..+..|...+.++.++++ ++++++.|+.|++|++...+....+.++ ...+.++.++ +++
T Consensus 203 d~~~~~~~~~~~~~~~~v~~~~~~~~--------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 272 (342)
T d2ovrb2 203 DVETGNCIHTLTGHQSLTSGMELKDN--------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 272 (342)
T ss_dssp ETTTCCEEEEECCCCSCEEEEEEETT--------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred ECCCCEEEEEECCCCCCEEEEECCCC--------EEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCE
T ss_conf 25565365674166532057706899--------99997489889998655442211122100011010000137--984
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCCCEEEEEEE-----CCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCC
Q ss_conf 999975899988999889999799990899982-----778881223364064101343428707743433522101599
Q 000473 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-----GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1471)
Q Consensus 684 Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~-----gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ 758 (1471)
+++++.| |+|++||+++|++++.+. +|.+.+..+.|.+. ...+..|..+++. +.
T Consensus 273 ~~s~s~D--------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~------~~~la~g~~dGt~-------~~ 331 (342)
T d2ovrb2 273 VITSSDD--------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT------KLVCAVGSRNGTE-------ET 331 (342)
T ss_dssp EEEEETT--------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS------EEEEEEECSSSSS-------CC
T ss_pred EEEECCC--------CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCC------CCEEEEEECCCCC-------EE
T ss_conf 4999089--------9899999999979899862347898897899998799------9899999689997-------04
Q ss_pred CEEEECC
Q ss_conf 6686126
Q 000473 759 TFRQSQI 765 (1471)
Q Consensus 759 ~~r~w~l 765 (1471)
.++.|++
T Consensus 332 ~l~~~Df 338 (342)
T d2ovrb2 332 KLLVLDF 338 (342)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 8999938
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.8e-25 Score=181.40 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=134.6
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 16899825886689999912787765676897999997899299998899946999802688789999889999999999
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~ 640 (1471)
+....+.+|.+.|++++|+|+ ....+++|+.|+.|++||++++++...+..|..+|+++.++|+ ++
T Consensus 137 ~~~~~l~~h~~~v~~v~~~~~--------~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~------~~ 202 (311)
T d1nr0a1 137 TSNGNLTGQARAMNSVDFKPS--------RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD------GS 202 (311)
T ss_dssp CBCBCCCCCSSCEEEEEECSS--------SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT------SS
T ss_pred CCCCCCCCCCCCCCCCCCCCC--------CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
T ss_conf 111111111111111111211--------1012000112211111111111111111111111111234764------22
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999699929999889992889951-------79998199999499999999975899988999889999799990899
Q 000473 641 CFLSVGEDFSVALASLETLRVERMFP-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 641 ~l~S~s~DgsV~lwdl~t~~~i~~~~-------gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~ 713 (1471)
++++++.|+.|++|++++++....+. +|...|++++|+|++++|++|+.| ++|++||++++++++
T Consensus 203 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--------g~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--------KTIKIWNVATLKVEK 274 (311)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--------CEEEEEECCCCCEEE
T ss_conf 121111111110001244641122211111110024653210247889999999379--------969999999996999
Q ss_pred EEECCCCCCEEE-EEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 982778881223-3640641013434287077434335221015996686126
Q 000473 714 VLRGTASHSMFD-HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 714 ~l~gH~a~vi~~-~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~l 765 (1471)
++..|....... .+. ..+. .++....|+.++.|+.
T Consensus 275 ~l~~~~~~~~~~~~~~------------~~~~-----~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 275 TIPVGTRIEDQQLGII------------WTKQ-----ALVSISANGFINFVNP 310 (311)
T ss_dssp EEECCSSGGGCEEEEE------------ECSS-----CEEEEETTCCEEEEET
T ss_pred EEECCCCCCCEEEEEE------------ECCC-----EEEEEECCCEEEEEEC
T ss_conf 9979998633299999------------5199-----9999989997999958
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.5e-24 Score=173.83 Aligned_cols=135 Identities=26% Similarity=0.352 Sum_probs=111.1
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.++.++.|+.+++| +..+++....+.+|...|.++.++ +..+++|+.|++|++|
T Consensus 150 ~~~~~s~d~~i~~~---------------d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~dg~i~i~ 203 (293)
T d1p22a2 150 YIVSASGDRTIKVW---------------NTSTCEFVRTLNGHKRGIACLQYR-----------DRLVVSGSSDNTIRLW 203 (293)
T ss_dssp EEEEEETTSEEEEE---------------ETTTCCEEEEEECCSSCEEEEEEE-----------TTEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCEEEE---------------CCCCCCEEEEECCCCCCCCCCCCC-----------CCEEEEECCCCEEEEE
T ss_conf 20110699860410---------------078883889971554453221689-----------8758876589989998
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC---------CCEEEEECCCCCCCEEEEE
Q ss_conf 8899946999802688789999889999999999999996999299998899---------9288995179998199999
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET---------LRVERMFPGHPNYPAKVVW 677 (1471)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t---------~~~i~~~~gh~~~V~~V~w 677 (1471)
|+.++..+..+.+|...+.... ++ +..+++++.|+.|++||+.. ..++..+.+|.+.|++++|
T Consensus 204 d~~~~~~~~~~~~~~~~v~~~~--~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~ 275 (293)
T d1p22a2 204 DIECGACLRVLEGHEELVRCIR--FD------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 275 (293)
T ss_dssp ETTTCCEEEEECCCSSCEEEEE--CC------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred ECCCCEEEEEECCCCEEEEECC--CC------CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
T ss_conf 6655614665214310000014--54------107999867997999988888644456775455784588998899997
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 4999999999758999889998899997
Q 000473 678 DCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 678 spdg~~Lvtgs~D~s~~~D~dg~I~IWD 705 (1471)
+ +.+|++++.| |+|++||
T Consensus 276 d--~~~l~s~s~D--------g~i~iWD 293 (293)
T d1p22a2 276 D--EFQIVSSSHD--------DTILIWD 293 (293)
T ss_dssp C--SSCEEECCSS--------SEEEEEC
T ss_pred C--CCEEEEEECC--------CEEEEEC
T ss_conf 1--9999999229--------9899959
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-24 Score=176.12 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=135.8
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.+++++.|+.+.++. ..++.......+|.+.|++++|+++ +..+++|+.|+.+++|
T Consensus 155 ~l~s~~~d~~i~~~~---------------~~~~~~~~~~~~~~~~v~~l~~s~~---------~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 155 VCFSCCSDGNIAVWD---------------LHNQTLVRQFQGHTDGASCIDISND---------GTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEETTSCEEEEE---------------TTTTEEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSEEEEE
T ss_pred CCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCC
T ss_conf 111111111111111---------------1111111111111111110123444---------3211223566553211
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 88999469998026887899998899999999999999969992999988999288995179998199999499999999
Q 000473 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1471)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvt 686 (1471)
|+++++.+..+ .|.+.|.++.|+|+ ++.+++++.|+.+++|++++.+... ...|...|++++|+|++++|++
T Consensus 211 d~~~~~~~~~~-~~~~~i~~l~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s 282 (337)
T d1gxra_ 211 DLREGRQLQQH-DFTSQIFSLGYCPT------GEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp ETTTTEEEEEE-ECSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCEEECCC-CCCCCEEEEEECCC------CCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCEEEE
T ss_conf 11110000024-66661579997153------0300000025642111111111000-0124565416999899999999
Q ss_pred EECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 9758999889998899997999908999827788812233640641013434287077434335221015996686126
Q 000473 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 687 gs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~l 765 (1471)
++.| +.|++||..+++.+..+. |...+..+.|++. +. .++....|++++.|++
T Consensus 283 ~s~D--------g~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d------------~~-----~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 283 TGKD--------NLLNAWRTPYGASIFQSK-ESSSVLSCDISVD------------DK-----YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETT--------SEEEEEETTTCCEEEEEE-CSSCEEEEEECTT------------SC-----EEEEEETTSCEEEEEE
T ss_pred EECC--------CEEEEEECCCCCEEEECC-CCCCEEEEEEECC------------CC-----EEEEEECCCEEEEEEE
T ss_conf 9489--------969999899997999926-9998799999279------------99-----9999908996999977
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.4e-26 Score=186.15 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=114.0
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE---EECCCCCEEEEEEECCCCC
Q ss_conf 5841899986315653599999999699199998045434799988433587616899---8258866899999127877
Q 000473 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGHTGAVLCLAAHRMVGT 584 (1471)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~---l~gH~~~V~~La~spd~~~ 584 (1471)
|...|+++.+.+... ..+++++.||.+++|... +.+.... +.+|.+.|++++|+|+
T Consensus 158 h~~~v~~~~~~~~~~---~~~~~~~~d~~v~~~d~~---------------~~~~~~~~~~~~~~~~~v~~v~~~pd--- 216 (325)
T d1pgua1 158 HSQRINACHLKQSRP---MRSMTVGDDGSVVFYQGP---------------PFKFSASDRTHHKQGSFVRDVEFSPD--- 216 (325)
T ss_dssp CSSCEEEEEECSSSS---CEEEEEETTTEEEEEETT---------------TBEEEEEECSSSCTTCCEEEEEECST---
T ss_pred CCCCCCCCCCCCCCC---CEEEEEECCCCCCCCCCC---------------CCCCCEECCCCCCCCCCCEEEEECCC---
T ss_conf 123432111123432---068886211122111122---------------11000000001577775277630345---
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEC---CCCCCCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 6567689799999789929999889994699980268878999988---9999999999999996999299998899928
Q 000473 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS---PPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1471)
Q Consensus 585 ~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~s---P~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~ 661 (1471)
.+.++++|+.|+.|++||+++++++..+.+|..++..+.|+ |+ +.+|++++.|++|++||++++++
T Consensus 217 -----~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~d------g~~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 217 -----SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD------SQKFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp -----TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESS------SSEEEEEETTSEEEEEETTTTEE
T ss_pred -----CCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC------CCEEEEEECCCEEEEEECCCCCE
T ss_conf -----3100001123321013430012221111111111111000000368------99999995899399999999978
Q ss_pred EEEECCCCCC--CE--EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 8995179998--19--999949999999997589998899988999979
Q 000473 662 ERMFPGHPNY--PA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 662 i~~~~gh~~~--V~--~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi 706 (1471)
++.+..|... +. ++.|.+ +.+|++++.| |.|++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d--------g~i~vwdl 325 (325)
T d1pgua1 286 VQKWTLDKQQLGNQQVGVVATG-NGRIISLSLD--------GTLNFYEL 325 (325)
T ss_dssp EEEEECCTTCGGGCEEEEEEEE-TTEEEEEETT--------SCEEEEET
T ss_pred EEEEEECCCCCCCEEEEEEECC-CCEEEEEECC--------CEEEEEEC
T ss_conf 8999954874067699999889-9999999799--------99999979
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.8e-25 Score=181.40 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=66.7
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEE-EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 68999991278776567689799999789929999889994699-98026887899998899999999999999969992
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1471)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~-~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~Dgs 650 (1471)
.+.+++++|+ ++++++|+.|+.|++||+.+++... ....|..+|+++.|+|+ +..+++++.|+.
T Consensus 138 ~~~~~~~s~~---------~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~ 202 (299)
T d1nr0a2 138 NSSCVALSND---------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN------GAFLVATDQSRK 202 (299)
T ss_dssp CEEEEEECTT---------SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT------SSEEEEEETTSC
T ss_pred CCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCC
T ss_conf 2332211111---------1111111111111111111111111111111111111111111------111111111111
Q ss_pred EEEEECCCCCEE---EEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 999988999288---9951799981999994999999999758999889998899997999908
Q 000473 651 VALASLETLRVE---RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 651 V~lwdl~t~~~i---~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~l 711 (1471)
|++|++.++... ..+.+|..+|++++|+|++.+|++|+.| +.|++||++++..
T Consensus 203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d--------g~i~iwd~~~~~~ 258 (299)
T d1nr0a2 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD--------NSVIVWNMNKPSD 258 (299)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--------CEEEEEECCCCCC
T ss_conf 1111111111111111111111111111246664513888289--------9799998999973
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-22 Score=162.58 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE------ECCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 8866899999127877656768979999978992999988999469998------0268878999988999999999999
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM------HHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l------~~H~~~V~si~~sP~~~~~~~~~~l 642 (1471)
+...++|++|+|+ .++++|+.|++|++||+.+++++..+ .+|..+|++++|+|+ ++.|
T Consensus 183 ~~~~~~~v~~s~d----------g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~l 246 (393)
T d1sq9a_ 183 PSQFATSVDISER----------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ------GSLL 246 (393)
T ss_dssp SCCCCCEEEECTT----------SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS------TTEE
T ss_pred CCCCEEEEEECCC----------CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC------CCEE
T ss_conf 8986789997899----------98999938982999860233211000011111242563877004665------3201
Q ss_pred EEEECCCC---EEEEECCCCCEEEEEC-------------CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 99969992---9999889992889951-------------7999819999949999999997589998899988999979
Q 000473 643 LSVGEDFS---VALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 643 ~S~s~Dgs---V~lwdl~t~~~i~~~~-------------gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi 706 (1471)
++++.|++ |++||+++++++..+. +|...|++++|+|++++|++++.| ++|++||+
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--------~~v~vWd~ 318 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKLRFWDV 318 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--------SEEEEEET
T ss_pred EEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCC--------CEEEEEEC
T ss_conf 1242898842100103532134443115666643102320235866600138988806987799--------98999999
Q ss_pred CCCEEEEEEECCCCCCEE
Q ss_conf 999089998277888122
Q 000473 707 KTGARERVLRGTASHSMF 724 (1471)
Q Consensus 707 ~tg~li~~l~gH~a~vi~ 724 (1471)
++|++++++.||...+-.
T Consensus 319 ~~g~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEI 336 (393)
T ss_dssp TTTEEEEEEECCGGGCSS
T ss_pred CCCCEEEEECCCCCCCCC
T ss_conf 999799999886876137
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=3.5e-24 Score=172.83 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=61.8
Q ss_pred CCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCC-CCCCCCCC--CCCCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 418999863156535999999996991999980454347-99988433--587616899825886689999912787765
Q 000473 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 510 ~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~-d~~~~~~d--~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1471)
..|+++.+.++.. .+++|+.||.+++|........ ......|+ ...+.......+|.+.|.+++|+|+
T Consensus 142 ~~v~~v~~~p~~~----~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----- 212 (371)
T d1k8kc_ 142 STVLSLDWHPNSV----LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----- 212 (371)
T ss_dssp SCEEEEEECTTSS----EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-----
T ss_pred CCCCCCCCCCCCC----CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC-----
T ss_conf 2221111111111----1000134767999840157643100122111111110112440476674789875123-----
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 676897999997899299998899946999802688789999889999999999999996999299998899
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1471)
Q Consensus 587 ~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t 658 (1471)
++++++|+.|++|++||+.++..+..+..|..+|.++.|+|+ +..++ ++.|+.+.+|....
T Consensus 213 ----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d------~~~la-~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 213 ----GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE------SSLVA-AGHDCFPVLFTYDS 273 (371)
T ss_dssp ----SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET------TEEEE-EETTSSCEEEEEET
T ss_pred ----CCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCC------CCEEE-EECCCCEEEEEEEC
T ss_conf ----321000014786058864101210000014665203654699------97999-98199267877608
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2e-23 Score=167.86 Aligned_cols=147 Identities=14% Similarity=0.243 Sum_probs=116.5
Q ss_pred EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCEEEEE-ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 999999699-1999980454347999884335876168998-25886689999912787765676897999997899299
Q 000473 527 AIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1471)
Q Consensus 527 ~lv~G~~DG-~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~ 604 (1471)
.+++|+.++ .+++|... .......+ ..|.+.|++++|+|+ +.+|++|+.|+.|+
T Consensus 132 ~~~v~~~~~~~v~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~g~~dg~i~ 187 (287)
T d1pgua2 132 YVAVGLEEGNTIQVFKLS---------------DLEVSFDLKTPLRAKPSYISISPS---------ETYIAAGDVMGKIL 187 (287)
T ss_dssp EEEEEETTTSCEEEEETT---------------EEEEEEECSSCCSSCEEEEEECTT---------SSEEEEEETTSCEE
T ss_pred CEEEECCCCCEEEEEECC---------------CCCEEEEEEECCCCCEEEEEECCC---------CCCCCCCCCCCCCC
T ss_conf 111000221000210001---------------221000121024785369995167---------65211011111100
Q ss_pred EEECCCCCEEE-EEECCCCCEEEEEECCCCCC----CCCCCEEEEEECCCCEEEEECCC-CCEEEEECCCCCCCEEEEEC
Q ss_conf 99889994699-98026887899998899999----99999999996999299998899-92889951799981999994
Q 000473 605 IWDLGSGNLIT-VMHHHVAPVRQIILSPPQTE----HPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWD 678 (1471)
Q Consensus 605 iWDl~tg~~l~-~l~~H~~~V~si~~sP~~~~----~~~~~~l~S~s~DgsV~lwdl~t-~~~i~~~~gh~~~V~~V~ws 678 (1471)
+||+.+++... .+..|.++|.++.|+|.... ...+.++++++.|++|++|++++ .+.+..+.+|...|+++.|+
T Consensus 188 i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp EEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred CEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 00002332110001111111100000136541001267887027664999599988899975899927878985899998
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 9999999997589998899988999979
Q 000473 679 CPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1471)
Q Consensus 679 pdg~~Lvtgs~D~s~~~D~dg~I~IWDi 706 (1471)
|++ .+++++.| ++|++|++
T Consensus 268 ~~~-~l~s~g~D--------~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGAD--------ACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETT--------SCEEEEEE
T ss_pred CCC-EEEEEECC--------CEEEEEEE
T ss_conf 999-89999799--------92999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.5e-23 Score=166.22 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=117.0
Q ss_pred CEEEEEEECCCCCCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCC
Q ss_conf 1899986315653599-999999699199998045434799988433587616899825886689999912787765676
Q 000473 511 IVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1471)
Q Consensus 511 ~Vts~~~is~~~f~P~-~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~ 589 (1471)
.++++. |+|+ .+++|+.||.|++|+... ++ ..........+.+|...|++++|+|+
T Consensus 186 ~~~~v~------~s~dg~lasgs~Dg~i~iwd~~~-------~~--~~~~~~~~~~l~~h~~~V~~l~~spd-------- 242 (393)
T d1sq9a_ 186 FATSVD------ISERGLIATGFNNGTVQISELST-------LR--PLYNFESQHSMINNSNSIRSVKFSPQ-------- 242 (393)
T ss_dssp CCCEEE------ECTTSEEEEECTTSEEEEEETTT-------TE--EEEEEECCC---CCCCCEEEEEECSS--------
T ss_pred CEEEEE------ECCCCEEEEEECCCCEEEEEECC-------CC--CCCCCCCCCCCCCCCCEEEECCCCCC--------
T ss_conf 678999------78999899993898299986023-------32--11000011111242563877004665--------
Q ss_pred CCCEEEEEECCCC---EEEEECCCCCEEEEEE-------------CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 8979999978992---9999889994699980-------------26887899998899999999999999969992999
Q 000473 590 FNEVLVSGSMDCS---IRIWDLGSGNLITVMH-------------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1471)
Q Consensus 590 ~~~~LvSGs~Dgt---I~iWDl~tg~~l~~l~-------------~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~l 653 (1471)
+++|++|+.|++ |++||+.+++++..+. +|.+.|++++|+|+ +++++|++.|++|++
T Consensus 243 -g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd------~~~l~S~s~D~~v~v 315 (393)
T d1sq9a_ 243 -GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRF 315 (393)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEE
T ss_pred -CCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCC------CCEEEEECCCCEEEE
T ss_conf -3201124289884210010353213444311566664310232023586660013898------880698779998999
Q ss_pred EECCCCCEEEEECCCCCCCE----EEEECCCCCEEEEE
Q ss_conf 98899928899517999819----99994999999999
Q 000473 654 ASLETLRVERMFPGHPNYPA----KVVWDCPRGYIACL 687 (1471)
Q Consensus 654 wdl~t~~~i~~~~gh~~~V~----~V~wspdg~~Lvtg 687 (1471)
||++++++++++.+|...|. .++|+|++..++++
T Consensus 316 Wd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 316 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 99999979999988687613773489999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.1e-21 Score=152.49 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=109.2
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 99999996991999980454347999884335876168998258866899999127877656768979999978992999
Q 000473 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1471)
Q Consensus 526 ~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~i 605 (1471)
..++.+..|+.+++| +..+++......++...+.++.++++ +..+++++.|++|++
T Consensus 172 ~~~~~~~~d~~i~~~---------------d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~~i~i 227 (355)
T d1nexb2 172 NIVVSGSYDNTLIVW---------------DVAQMKCLYILSGHTDRIYSTIYDHE---------RKRCISASMDTTIRI 227 (355)
T ss_dssp TEEEEEETTSCEEEE---------------ETTTTEEEEEECCCSSCEEEEEEETT---------TTEEEEEETTSCEEE
T ss_pred CEEEEECCCCEEEEE---------------ECCCCCCEEEEECCCCCCCCCCCCCC---------CEEEECCCCCCEEEE
T ss_conf 334421144204443---------------01311000110001233211111121---------002101245636876
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEE-EECCCCCEE
Q ss_conf 9889994699980268878999988999999999999999699929999889992889951799981999-994999999
Q 000473 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV-VWDCPRGYI 684 (1471)
Q Consensus 606 WDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V-~wspdg~~L 684 (1471)
||+.++.++..+.+|..+|.++.++++ .+++++.|+.|++||+++...... .|...+..+ .+++++.++
T Consensus 228 ~d~~~~~~~~~~~~h~~~v~~~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 297 (355)
T d1nexb2 228 WDLENGELMYTLQGHTALVGLLRLSDK--------FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNIL 297 (355)
T ss_dssp EETTTCCEEEEECCCSSCCCEEEECSS--------EEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCC--------EEEEEECCCCCCCCCCCCCCEECC--CCCCCCEEEEEECCCCCEE
T ss_conf 301221111111111111111123210--------033320111111111111110001--2468822999984999899
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEE-EEECCCCCCEEEEEE
Q ss_conf 99975899988999889999799990899-982778881223364
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKTGARER-VLRGTASHSMFDHFC 728 (1471)
Q Consensus 685 vtgs~D~s~~~D~dg~I~IWDi~tg~li~-~l~gH~a~vi~~~~~ 728 (1471)
++ +.| +.|++||+++|++++ .+.+|...+..+.|.
T Consensus 298 ~~-g~d--------~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~ 333 (355)
T d1nexb2 298 VS-GSE--------NQFNIYNLRSGKLVHANILKDADQIWSVNFK 333 (355)
T ss_dssp EE-EET--------TEEEEEETTTCCBCCSCTTTTCSEEEEEEEE
T ss_pred EE-EEC--------CEEEEEECCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 99-809--------9799999999979888845899989999983
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6e-23 Score=164.62 Aligned_cols=89 Identities=9% Similarity=0.024 Sum_probs=71.0
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 89999842999999089996999928996999985689998202249840555343576640333213575322222235
Q 000473 11 SGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1471)
Q Consensus 11 ~~~~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~ 90 (1471)
-..+|...|++++|+||+++|+||+.||+|++||+.. ...........+|.++|++++
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~-------------------- 63 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPLLCCN-------------------- 63 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEET--TTTEEEEEEEEECSSCEEEEE--------------------
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC--CCCCEEEEEECCCCCCEEEEE--------------------
T ss_conf 6889989788899958999999997999299997569--986368988558999889999--------------------
Q ss_pred CCCCCCCCCC-CCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 6664455469-9998999837990999996999189955
Q 000473 91 SSNVMGKSSL-DNGALISACTDGVLCVWSRSSGHCRRRR 128 (1471)
Q Consensus 91 ~~~~~~~~s~-d~~~LvSas~DG~I~VWdv~sG~ci~~~ 128 (1471)
|.+ ++.+|+|++.||.+++|+...+......
T Consensus 64 -------f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~ 95 (342)
T d1yfqa_ 64 -------FIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp -------EEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred -------EECCCCCEEEECCCCCCEEEEECCCCCCCCCC
T ss_conf -------95899978998126531145420443200000
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.2e-23 Score=166.42 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=133.5
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEE---CCCCCEEEEEECCCCCC
Q ss_conf 761689982588668999991278776567689799999789929999889994699980---26887899998899999
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTE 635 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~---~H~~~V~si~~sP~~~~ 635 (1471)
++.....+.+|.+.|++++|+|+ ....+++++.|+.+++||...++....+. .|...|.+++|+|+.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~~--------~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-- 217 (325)
T d1pgua1 148 SGNSLGEVSGHSQRINACHLKQS--------RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-- 217 (325)
T ss_dssp TCCEEEECCSCSSCEEEEEECSS--------SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--
T ss_pred CCCCCEEEEECCCCCCCCCCCCC--------CCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCC--
T ss_conf 33110012001234321111234--------32068886211122111122110000000015777752776303453--
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEC---CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 9999999999699929999889992889951799981999994---9999999997589998899988999979999089
Q 000473 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD---CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~ws---pdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li 712 (1471)
+..+++++.|+.|++||+++++++..+.+|..++..+.|+ |++.+|++++.| +.|+|||+++++++
T Consensus 218 ---~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D--------~~i~iwd~~~~~~~ 286 (325)
T d1pgua1 218 ---GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD--------ATIRVWDVTTSKCV 286 (325)
T ss_dssp ---CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--------SEEEEEETTTTEEE
T ss_pred ---CEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEE
T ss_conf ---1000011233210134300122211111111111110000003689999999589--------93999999999788
Q ss_pred EEEECCCCCCEE--EEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 998277888122--33640641013434287077434335221015996686126
Q 000473 713 RVLRGTASHSMF--DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 713 ~~l~gH~a~vi~--~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~l 765 (1471)
+.+..|...... ..++. .....++..+.|++++.|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~----------------~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 287 QKWTLDKQQLGNQQVGVVA----------------TGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEECCTTCGGGCEEEEEE----------------EETTEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCCCEEEEEEE----------------CCCCEEEEEECCCEEEEEEC
T ss_conf 9999548740676999998----------------89999999979999999979
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.1e-20 Score=145.24 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=101.6
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969919999804543479998843358761689982588668999991278776567689799999789929999
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1471)
.++.|+.||.|++|.+.... ..........+...+.+..+.+. .+..+++++.|+.+.+|
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~~v~ 221 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCE------------DDNGTIEESGLKYQIRDVALLPK--------EQEGYACSSIDGRVAVE 221 (342)
T ss_dssp EEEEEESTTEEEEEESSCCT------------TCCCEEEECSCSSCEEEEEECSG--------GGCEEEEEETTSEEEEE
T ss_pred CEEEECCCCCEEEEECCCCC------------CCCEEEEECCCCCCEEEEEEECC--------CCCEEEEECCCCEEEEE
T ss_conf 02465179847887605676------------34111210254221014676369--------99878865489959999
Q ss_pred ECCCCCEE------E---------EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 88999469------9---------98026887899998899999999999999969992999988999288995179998
Q 000473 607 DLGSGNLI------T---------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1471)
Q Consensus 607 Dl~tg~~l------~---------~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~ 671 (1471)
+....... . ....|...|++++|+|+ ++.|++++.|+.|++||+++++.+..+..+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~------~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~ 294 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred EECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCC------CCEEEEECCCCEEEEEECCCCCEEEEECCC-CC
T ss_conf 80598640111235125655531477762354315996698------447999879998999999989498870589-99
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 199999499999999975899988999889999799
Q 000473 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 672 V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
...++|+|+++++++++.| +++++|...
T Consensus 295 ~~~~~~s~~~~~l~~a~sd--------d~~~~~~~~ 322 (342)
T d1yfqa_ 295 DSVVKIACSDNILCLATSD--------DTFKTNAAI 322 (342)
T ss_dssp SEEEEEEECSSEEEEEEEC--------THHHHCSSS
T ss_pred CEEEEEEECCCEEEEEECC--------CCEEEEEEE
T ss_conf 8799999479999999919--------927883012
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=4.7e-20 Score=145.45 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCCCCCCEEE-------EEECCCCEEEEECCCCCEEEEE---------CCCCCCCEE
Q ss_conf 946999802688789999889999999999999-------9969992999988999288995---------179998199
Q 000473 611 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-------SVGEDFSVALASLETLRVERMF---------PGHPNYPAK 674 (1471)
Q Consensus 611 g~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~-------S~s~DgsV~lwdl~t~~~i~~~---------~gh~~~V~~ 674 (1471)
++....+.+|...+..++|+|+ +..++ +++.|++|++||++++++...+ ..+...+..
T Consensus 293 ~~~~~~l~g~~~~v~~v~~sPd------g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~ 366 (426)
T d1hzua2 293 WKKVAELQGQGGGSLFIKTHPK------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366 (426)
T ss_dssp TSEEEEEECSSSCCCCEECCTT------CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred CEEEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEE
T ss_conf 2586898668876367874899------8618885067988022887999989878767089502110256778851898
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 999499999999975899988999889999799990899982778
Q 000473 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 675 V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~ 719 (1471)
++|+|||+++++.+.. ..+.++.|.|||.+|+++..++.++.
T Consensus 367 ~~fSpDGk~i~vs~~~---~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWN---GKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp EEECSSSSEEEEEECC---CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred EEECCCCCEEEEEEEC---CCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 7999999999999724---88889829999999873899987898
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.8e-19 Score=141.67 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=79.1
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 35999999996991999980454347999884335876168998258866899999127877656768979999978992
Q 000473 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1471)
Q Consensus 523 f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~Dgt 602 (1471)
+.+..+++|+.||.|++|. ..+......+.+|...|.++. ++ +.+|++|+.|+.
T Consensus 186 ~~~~~l~~~~~dg~i~i~d---------------~~~~~~~~~~~~~~~~v~~~~--~~---------~~~l~sg~~dg~ 239 (293)
T d1p22a2 186 YRDRLVVSGSSDNTIRLWD---------------IECGACLRVLEGHEELVRCIR--FD---------NKRIVSGAYDGK 239 (293)
T ss_dssp EETTEEEEEETTSCEEEEE---------------TTTCCEEEEECCCSSCEEEEE--CC---------SSEEEEEETTSC
T ss_pred CCCCEEEEECCCCEEEEEE---------------CCCCEEEEEECCCCEEEEECC--CC---------CEEEEEECCCCE
T ss_conf 8987588765899899986---------------655614665214310000014--54---------107999867997
Q ss_pred EEEEECCC---------CCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 99998899---------946999802688789999889999999999999996999299998
Q 000473 603 IRIWDLGS---------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1471)
Q Consensus 603 I~iWDl~t---------g~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwd 655 (1471)
|++||+.. ..++..+.+|.++|+++.|++ ..|+|++.|++|++||
T Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--------~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--------FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--------SCEEECCSSSEEEEEC
T ss_pred EEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC--------CEEEEEECCCEEEEEC
T ss_conf 99998888864445677545578458899889999719--------9999992299899959
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.87 E-value=1.8e-19 Score=141.54 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=57.1
Q ss_pred EEEECC-CCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999908-9996999928996999985689998202249840555343576640333213575322222235666445546
Q 000473 21 ATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1471)
Q Consensus 21 aia~Sp-dg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s 99 (1471)
+--||| ||+++|+++ +|.|.+||+.. ++ .+. .+|...|++++ |+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~---~~--~~~--~~~~~~v~~~~---------------------------~s 51 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSG---TY--VLK--VPEPLRIRYVR---------------------------RG 51 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTS---SB--EEE--CSCCSCEEEEE---------------------------EC
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCC---CC--EEE--CCCCCCEEEEE---------------------------EC
T ss_conf 0514688999999998-99699998999---94--899--16999888899---------------------------98
Q ss_pred CCCCEEEEEECCC--EEEEEECCCCEEEEE
Q ss_conf 9999899983799--099999699918995
Q 000473 100 LDNGALISACTDG--VLCVWSRSSGHCRRR 127 (1471)
Q Consensus 100 ~d~~~LvSas~DG--~I~VWdv~sG~ci~~ 127 (1471)
+|+++|++++.|. .+.+||+.+|+..+.
T Consensus 52 pDg~~l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 52 GDTKVAFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp SSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 999999999928998999998999948875
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.3e-18 Score=134.30 Aligned_cols=125 Identities=10% Similarity=-0.049 Sum_probs=93.3
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 25886689999912787765676897999997899299998899946999802688789999889999999999999996
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1471)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s 646 (1471)
.+|...|....+.++ +..+++++.|.+.++|+..+.. .|.....++.+ |+ ++.+++++
T Consensus 290 ~~~~~~v~~~~~~~~---------g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pD------g~~la~~s 347 (432)
T d1qksa2 290 PDNAWKILDSFPALG---------GGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FD------IKAMTGDG 347 (432)
T ss_dssp TTTBTSEEEEEECSC---------SCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EE------GGGCCCSS
T ss_pred CCCCCEEEEEEECCC---------CCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-EE------CHHHCCCC
T ss_conf 465657779988689---------9768887268864102112678------88770359999-96------24610455
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 9992999988999288995179998199999499999999975899988999889999799990899982778
Q 000473 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 647 ~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~ 719 (1471)
.|+.+++|++.++..+ ..|...+..++|+|||++++.++.. +++.++.|.|||.+|+++.+++.+..
T Consensus 348 ~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~---~~~~~g~i~i~D~~T~k~~~~i~~~~ 414 (432)
T d1qksa2 348 SDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWN---GKDQESALVVVDDKTLELKHVIKDER 414 (432)
T ss_dssp SCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEEC---CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEEC---CCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 6784486334344445---7899868976798999999999704---88888868999999955886846888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=6.2e-19 Score=138.05 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCC-C
Q ss_conf 8418999863156535999999996991999980454347999884335876168-9982588668999991278776-5
Q 000473 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTA-K 586 (1471)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~La~spd~~~~-~ 586 (1471)
...++++.+.++.. .+++|+.||.|++|... ++... ..+.+|.+.|++++|+|..... .
T Consensus 162 ~~~v~~~~~s~~~~----~l~~g~~dg~i~i~d~~---------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 162 RAKPSYISISPSET----YIAAGDVMGKILLYDLQ---------------SREVKTSRWAFRTSKINAISWKPAEKGANE 222 (287)
T ss_dssp SSCEEEEEECTTSS----EEEEEETTSCEEEEETT---------------TTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred CCCEEEEEECCCCC----CCCCCCCCCCCCCEEEC---------------CCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 78536999516765----21101111110000002---------------332110001111111100000136541001
Q ss_pred CCCCCCEEEEEECCCCEEEEECCC-CCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEC
Q ss_conf 676897999997899299998899-9469998026887899998899999999999999969992999988
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1471)
Q Consensus 587 ~~~~~~~LvSGs~DgtI~iWDl~t-g~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl 656 (1471)
...++.++++|+.|++|++||+.. ++.+..+.+|.+.|+++.|+|+ + .+++++.|++|++|++
T Consensus 223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~------~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP------S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET------T-EEEEEETTSCEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC------C-EEEEEECCCEEEEEEE
T ss_conf 26788702766499959998889997589992787898589999899------9-8999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=9.2e-18 Score=130.28 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=84.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEE-------EEECCCCEEEEECCCCCEEEEEE---------CC
Q ss_conf 587616899825886689999912787765676897999-------99789929999889994699980---------26
Q 000473 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-------SGSMDCSIRIWDLGSGNLITVMH---------HH 620 (1471)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~Lv-------SGs~DgtI~iWDl~tg~~l~~l~---------~H 620 (1471)
....+....+.+|...+..++|+|+ +.+++ +|+.|++|++||+.+++...++. .|
T Consensus 290 ~~~~~~~~~l~g~~~~v~~v~~sPd---------g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~ 360 (426)
T d1hzua2 290 QYAWKKVAELQGQGGGSLFIKTHPK---------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 360 (426)
T ss_dssp TTBTSEEEEEECSSSCCCCEECCTT---------CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred CCCCEEEEEEECCCCCEEEEECCCC---------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCC
T ss_conf 3302586898668876367874899---------8618885067988022887999989878767089502110256778
Q ss_pred CCCEEEEEECCCCCCCCCCCEE-EEE----ECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEE
Q ss_conf 8878999988999999999999-999----6999299998899928899517999819999949999999
Q 000473 621 VAPVRQIILSPPQTEHPWSDCF-LSV----GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685 (1471)
Q Consensus 621 ~~~V~si~~sP~~~~~~~~~~l-~S~----s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lv 685 (1471)
...|.+++|+|+ |+.+ +++ +.|+.|++||.++++....+.++. .++|+|.|-+
T Consensus 361 ~~rv~~~~fSpD------Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 361 AKRVVQPEYNKR------GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp CCCEEEEEECSS------SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred CCCEEEEEECCC------CCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEEE
T ss_conf 851898799999------999999972488889829999999873899987898------4199955757
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.2e-16 Score=122.82 Aligned_cols=184 Identities=12% Similarity=-0.023 Sum_probs=111.1
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 89996999928996999985689998202249840555343576640333213575322222235666445546999989
Q 000473 26 TQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL 105 (1471)
Q Consensus 26 pdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s~d~~~L 105 (1471)
++.-.+++.+.||+|.+||..+ .+.+..+..|. .+..++ |++|++++
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t-----~~v~~~~~~g~-~~~~v~---------------------------fSpDG~~l 76 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGST-----YEIKTVLDTGY-AVHISR---------------------------LSASGRYL 76 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTT-----CCEEEEEECSS-CEEEEE---------------------------ECTTSCEE
T ss_pred CCCEEEEEECCCCEEEEEECCC-----CCEEEEEECCC-CEEEEE---------------------------ECCCCCEE
T ss_conf 7828999976999799998999-----83999973799-713799---------------------------88999999
Q ss_pred EEEECCCEEEEEECCCCEEEE--EEECCCCCCCCCEEE---ECCCCCEEE-EECCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998379909999969991899--550899878892799---748999699-99130023687655531222346644445
Q 000473 106 ISACTDGVLCVWSRSSGHCRR--RRKLPPWVGSPSVIC---TLPSNPRYV-CIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1471)
Q Consensus 106 vSas~DG~I~VWdv~sG~ci~--~~~l~~~~g~~~~i~---~~s~~~~ll-~~G~~~id~~~~~~~h~~~~i~~~~~~~~ 179 (1471)
++++.||.+.+||+.+++... .++.- ..|..+. .+++|++++ +.+..
T Consensus 77 ~~~s~dg~v~~~d~~t~~~~~~~~i~~~---~~~~~~~~s~~~SpDG~~l~vs~~~------------------------ 129 (432)
T d1qksa2 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEGWEDKYAIAGAYW------------------------ 129 (432)
T ss_dssp EEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEEE------------------------
T ss_pred EEECCCCCEEEEEEECCCCEEEEEEECC---CCCCCEEEECCCCCCCCEEEEECCC------------------------
T ss_conf 9982899978998108981288998448---8987769843218888889998178------------------------
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCC-------CC-EEEEEEEEECCCCCCEEEEEE-ECCCCEEEEECCCC
Q ss_conf 6788899997259999586417999963276546-------88-179999640678871169999-38882999997889
Q 000473 180 KEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSI-------GP-WKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPISKE 250 (1471)
Q Consensus 180 ~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~-------~~-i~~~~v~~~~~~~~~~~ilva-~~dG~i~vW~l~~~ 250 (1471)
++.+.+||..+.+++..+......+ +. ..++.++ +++. .++++ ..++.+.+|+....
T Consensus 130 ---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s---~dg~--~~~vs~~~~~~i~~~d~~~~ 195 (432)
T d1qksa2 130 ---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS---HYRP--EFIVNVKETGKILLVDYTDL 195 (432)
T ss_dssp ---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC---SSSS--EEEEEETTTTEEEEEETTCS
T ss_pred ---------CCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEEC---CCCC--EEEEEECCCCEEEEEECCCC
T ss_conf ---------982799907655422540247764352201688850589987---8999--89999816882999984378
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCE
Q ss_conf 87643347875457884200000377435731999921996999990984
Q 000473 251 SHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1471)
Q Consensus 251 ~~~~~~~~~~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~ 300 (1471)
+.. . +. .+ . .-.....+.++++|+.++....+.
T Consensus 196 ~~~---~---~~----~i-----~--~g~~~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 196 NNL---K---TT----EI-----S--AERFLHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp SEE---E---EE----EE-----E--CCSSEEEEEECTTSCEEEEEEGGG
T ss_pred CCC---E---EE----EE-----C--CCCCCCCCEECCCCCEEEEECCCC
T ss_conf 752---2---79----98-----3--367542653889887999951666
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=2.8e-15 Score=113.77 Aligned_cols=114 Identities=11% Similarity=-0.052 Sum_probs=89.4
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEE-EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 9799999789929999889994699-980268878999988999999999999999699929999889992889951799
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1471)
Q Consensus 591 ~~~LvSGs~DgtI~iWDl~tg~~l~-~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~ 669 (1471)
...+.++..+..+.+||+.++.... .+..|...+..+.++++ +..++... ++.+.+||+.+++.+..+. +.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~ 291 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK------DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LD 291 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS------CTTEEEEE-ESEEEEEETTTTEEEEEEE-CS
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECC------CCEEEEEC-CCEEEEEECCCCCEEEEEC-CC
T ss_conf 3257540478349999777883687876315660688897179------97899942-9838999899993999974-99
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 981999994999999999758999889998899997999908999827788
Q 000473 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 670 ~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a 720 (1471)
..+.+++|+||++++++++.| +.|+|||.++++.+..+.-+.+
T Consensus 292 ~~~~~va~s~DG~~l~v~~~d--------~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 292 HTYYCVAFDKKGDKLYLGGTF--------NDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp SCCCEEEECSSSSCEEEESBS--------SEEEEEETTTTEEEEEEECSSS
T ss_pred CCEEEEEECCCCCEEEEEECC--------CCEEEEECCCCCEEEEEECCCC
T ss_conf 977899996899999999489--------9299999965879799988999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=2.4e-12 Score=94.41 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=61.9
Q ss_pred CCCCCEEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9998429999990899969999-----28996999985689998202249840555343576640333213575322222
Q 000473 13 TPPSHRVTATSALTQPPTLYTG-----GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1471)
Q Consensus 13 ~~p~h~Itaia~Spdg~~LvTG-----s~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~ 87 (1471)
......+..++++||++.++.. +.+++|.+||..+ .+.+..+.++..+ .++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-----g~~~~~~~~~~~~--~~a----------------- 72 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-----GSILGHVNGGFLP--NPV----------------- 72 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----CCEEEEEECCCCC--CEE-----------------
T ss_conf 5678986563018999789997342257876599998999-----9799999579886--079-----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEE----------CCCEEEEEECCCCEEEEEEECC
Q ss_conf 2356664455469999899983----------7990999996999189955089
Q 000473 88 AENSSNVMGKSSLDNGALISAC----------TDGVLCVWSRSSGHCRRRRKLP 131 (1471)
Q Consensus 88 ~~~~~~~~~~~s~d~~~LvSas----------~DG~I~VWdv~sG~ci~~~~l~ 131 (1471)
+++|+++|+.++ .++.+.+||..+++.+.....+
T Consensus 73 ----------~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~ 116 (373)
T d2madh_ 73 ----------AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred ----------ECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf ----------86899989999605775321245318999977789388897268
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.74 E-value=6.2e-12 Score=91.64 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=93.2
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 7616899825886689999912787765676897999997-899299998899946999802688789999889999999
Q 000473 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs-~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~ 637 (1471)
+......+..+ ..+.++.++++ +..++.++ .+..+.+|+....+.......+ ..+..+.+.++
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 210 (301)
T d1l0qa2 147 TKAVINTVSVG-RSPKGIAVTPD---------GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPE----- 210 (301)
T ss_dssp TTEEEEEEECC-SSEEEEEECTT---------SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTT-----
T ss_pred CCCEEEECCCC-CCCEEEEEECC---------CCCEEEECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCC-----
T ss_conf 46303531567-88428886046---------5401310121111111111100011101335-77503110111-----
Q ss_pred CCCEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEE-CCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 999999996---999299998899928899517999819999949999999997-5899988999889999799990899
Q 000473 638 WSDCFLSVG---EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLC-RDHSRTSDAVDVLFIWDVKTGARER 713 (1471)
Q Consensus 638 ~~~~l~S~s---~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs-~D~s~~~D~dg~I~IWDi~tg~li~ 713 (1471)
+..++.++ .++.|.+||+.+++.+..+..+ ..+..++|+|++++|++++ .| ++|++||+.+++++.
T Consensus 211 -g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~--------~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 211 -GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC--------NTVSVIDTATNTITA 280 (301)
T ss_dssp -SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEEE
T ss_pred -CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECCCCEEEEEECCC--------CEEEEEECCCCEEEE
T ss_conf -101111002100002323656998199998489-9877999918989999998999--------969999999995999
Q ss_pred EEE
Q ss_conf 982
Q 000473 714 VLR 716 (1471)
Q Consensus 714 ~l~ 716 (1471)
++.
T Consensus 281 ~~~ 283 (301)
T d1l0qa2 281 TMA 283 (301)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.7e-15 Score=115.28 Aligned_cols=103 Identities=8% Similarity=0.069 Sum_probs=65.4
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9984299999908999699992899--69999856899982022498405553435766403332135753222222356
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDG--SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1471)
Q Consensus 14 ~p~h~Itaia~Spdg~~LvTGs~DG--~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~ 91 (1471)
++.++|++++|+|||+.|++++.|. .|.+||+.. + ....+.+|...|.+++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~---~~~~~~~~~~~v~~~~--------------------- 92 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---G---KAEKFEENLGNVFAMG--------------------- 92 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT---C---CEEECCCCCCSEEEEE---------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC---C---CEEEEECCCCEEEEEE---------------------
T ss_conf 699988889998999999999928998999998999---9---4887508971277412---------------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 6644554699998999837990999996999189955089987889279974899969999
Q 000473 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCI 152 (1471)
Q Consensus 92 ~~~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~ 152 (1471)
+++++++|++++.|+.+.+|++.++++......+ ........+++++++++.
T Consensus 93 ------~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~la~ 144 (360)
T d1k32a3 93 ------VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR---EAMITDFTISDNSRFIAY 144 (360)
T ss_dssp ------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SSCCCCEEECTTSCEEEE
T ss_pred ------ECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECC---CCCCCCHHHCCCEEEEEE
T ss_conf ------1145432100011111000001222100000013---552023012132256652
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=4.1e-14 Score=106.12 Aligned_cols=71 Identities=6% Similarity=-0.034 Sum_probs=54.9
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEEEEEEEC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-
Q ss_conf 96999928996999985689998202249840--555343576640333213575322222235666445546999989-
Q 000473 29 PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC--GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL- 105 (1471)
Q Consensus 29 ~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~--GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s~d~~~L- 105 (1471)
.+++|++.|++|.+||+.+ .+.+..+. ++...+.+++ +++|++++
T Consensus 2 ~~~vt~~~d~~v~v~D~~s-----~~~~~~i~~~~~~~~~~~i~---------------------------~spDg~~l~ 49 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK-----MAVDKVITIADAGPTPMVPM---------------------------VAPGGRIAY 49 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-----TEEEEEEECTTCTTCCCCEE---------------------------ECTTSSEEE
T ss_pred EEEEEECCCCEEEEEECCC-----CEEEEEEECCCCCCCCCEEE---------------------------ECCCCCEEE
T ss_conf 6999976799899999999-----94999998778899823799---------------------------999989999
Q ss_pred EEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99837990999996999189955089
Q 000473 106 ISACTDGVLCVWSRSSGHCRRRRKLP 131 (1471)
Q Consensus 106 vSas~DG~I~VWdv~sG~ci~~~~l~ 131 (1471)
++++.|+.|.+||+.+|+.+.....+
T Consensus 50 v~~~~~~~v~v~D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 50 ATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 99789994999999999298887247
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.69 E-value=3e-11 Score=87.10 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=63.8
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEE---ECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 1689982588668999991278776567689799999---7899299998899946999802688789999889999999
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSG---s~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~ 637 (1471)
.....+..+ ..+..++++++ +..++.+ ..++.|.+||+.+++.+..+..+ ..+..++|+|+
T Consensus 191 ~~~~~~~~~-~~~~~~~~~~~---------g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spd----- 254 (301)
T d1l0qa2 191 SVIDTVKVE-AAPSGIAVNPE---------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPD----- 254 (301)
T ss_dssp EEEEEEECS-SEEEEEEECTT---------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTT-----
T ss_pred EEEECCCCC-CCCCEEECCCC---------CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECC-----
T ss_conf 011101335-77503110111---------101111002100002323656998199998489-98779999189-----
Q ss_pred CCCEE-EEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 99999-9996999299998899928899517
Q 000473 638 WSDCF-LSVGEDFSVALASLETLRVERMFPG 667 (1471)
Q Consensus 638 ~~~~l-~S~s~DgsV~lwdl~t~~~i~~~~g 667 (1471)
++.+ ++++.|++|++||+++++.+.+++.
T Consensus 255 -g~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 255 -GKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp -SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -CCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf -899999989999699999999959999968
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=3.7e-12 Score=93.09 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=82.4
Q ss_pred EECCCCEEEEECCCCCEEE-EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEE
Q ss_conf 9789929999889994699-980268878999988999999999999999699929999889992889951799981999
Q 000473 597 GSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 675 (1471)
Q Consensus 597 Gs~DgtI~iWDl~tg~~l~-~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V 675 (1471)
+..+..+.+|+..++.... .+..+...+..+.++|+ +..++.. |+.+++||+.+++.+..+. +...+.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~ 285 (337)
T d1pbyb_ 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA------KTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSV 285 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT------SSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEE
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCC------CEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEE
T ss_conf 0367617999868885888983288750588874266------1399973--5528999898896999974-89988999
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 9949999999997589998899988999979999089998277
Q 000473 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 676 ~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH 718 (1471)
+|+|+|++|++++.| +.|+|||.++++.+..+.-.
T Consensus 286 ~~s~dG~~l~v~~~~--------~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 286 NVSTDGSTVWLGGAL--------GDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EECTTSCEEEEESBS--------SEEEEEETTTCCEEEEEECG
T ss_pred EECCCCCEEEEEECC--------CCEEEEECCCCCEEEEEECC
T ss_conf 997899999999499--------92999999987698999889
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=1.1e-11 Score=90.01 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=51.6
Q ss_pred EEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 29999990899969999-----2899699998568999820224984055534357664033321357532222223566
Q 000473 18 RVTATSALTQPPTLYTG-----GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1471)
Q Consensus 18 ~Itaia~Spdg~~LvTG-----s~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~ 92 (1471)
+++..+.+||++.++.. ..+++|.+||..+ .+++..+.++..+ .++
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-----g~~~~~~~~g~~~--~~a---------------------- 53 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-----GRVIGMIDGGFLP--NPV---------------------- 53 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT-----TEEEEEEEECSSC--EEE----------------------
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCC-----CCEEEEEECCCCC--CEE----------------------
T ss_conf 71747658999999998266477767199999999-----9499999899998--569----------------------
Q ss_pred CCCCCCCCCCCEEEEE----------ECCCEEEEEECCCCEEEEEEECC
Q ss_conf 6445546999989998----------37990999996999189955089
Q 000473 93 NVMGKSSLDNGALISA----------CTDGVLCVWSRSSGHCRRRRKLP 131 (1471)
Q Consensus 93 ~~~~~~s~d~~~LvSa----------s~DG~I~VWdv~sG~ci~~~~l~ 131 (1471)
+++|+++|+.+ +.||.|++||..+++.+.....+
T Consensus 54 -----~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~ 97 (355)
T d2bbkh_ 54 -----VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97 (355)
T ss_dssp -----ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred -----ECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
T ss_conf -----94899999999677764201589998999999999798898058
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.7e-08 Score=67.47 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=48.0
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EE
Q ss_conf 96999928996999985689998202249840555343576640333213575322222235666445546999989-99
Q 000473 29 PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL-IS 107 (1471)
Q Consensus 29 ~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s~d~~~L-vS 107 (1471)
..++++++|++|.+|+++. ++..+.+. ...|.+.|..|+ +++|+++| ++
T Consensus 5 ~v~v~~~~~~~I~v~~~~~--~~~l~~~~-~~~~~~~v~~la---------------------------~spDG~~L~v~ 54 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNH--EGALTLTQ-VVDVPGQVQPMV---------------------------VSPDKRYLYVG 54 (333)
T ss_dssp EEEEEEGGGTEEEEEEECT--TSCEEEEE-EEECSSCCCCEE---------------------------ECTTSSEEEEE
T ss_pred EEEEECCCCCCEEEEEECC--CCCEEEEE-EECCCCCEEEEE---------------------------EECCCCEEEEE
T ss_conf 9999878999389999839--99769999-975799886899---------------------------95897999999
Q ss_pred EECCCEEEEEECCCCE
Q ss_conf 8379909999969991
Q 000473 108 ACTDGVLCVWSRSSGH 123 (1471)
Q Consensus 108 as~DG~I~VWdv~sG~ 123 (1471)
+..|+.+.+|++..+.
T Consensus 55 ~~~d~~i~~~~i~~~~ 70 (333)
T d1ri6a_ 55 VRPEFRVLAYRIAPDD 70 (333)
T ss_dssp ETTTTEEEEEEECTTT
T ss_pred ECCCCEEEEEEEECCC
T ss_conf 7789969999996898
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=6.1e-09 Score=71.82 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=42.5
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCE-E-EEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 92999988999288995179998199999499999-9-999758999889998899997999908999827788
Q 000473 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY-I-ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1471)
Q Consensus 649 gsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~-L-vtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a 720 (1471)
..|.+||..+++.+..+.. ...+.+++|+|+++. + +++..| +.|+|||.++|+.++.+.++..
T Consensus 280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d--------~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD--------KTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT--------TEEEEEETTTCCEEEEECCCCS
T ss_pred CEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCC--------CEEEEEECCCCCEEEEEECCCC
T ss_conf 7599986788849899668-998779999289996999997899--------9899999999989999928697
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.29 E-value=2.8e-09 Score=74.01 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=72.8
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 89982588668999991278776567689799999789929999889994699980268878999988999999999999
Q 000473 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1471)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l 642 (1471)
...+.+|...+.++.++++ +.+++.+. ++.|.+||..+++.+..+. +...+.+++|+|+ +..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~D------G~~l 306 (346)
T d1jmxb_ 244 TQEFADLTELYFTGLRSPK---------DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKK------GDKL 306 (346)
T ss_dssp EEEEEECSSCEEEEEECSS---------CTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSS------SSCE
T ss_pred EEEEECCCCEEEEEEEECC---------CCEEEEEC-CCEEEEEECCCCCEEEEEC-CCCCEEEEEECCC------CCEE
T ss_conf 7876315660688897179---------97899942-9838999899993999974-9997789999689------9999
Q ss_pred EEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 9996999299998899928899517999
Q 000473 643 LSVGEDFSVALASLETLRVERMFPGHPN 670 (1471)
Q Consensus 643 ~S~s~DgsV~lwdl~t~~~i~~~~gh~~ 670 (1471)
++++.|+.|++||.++++.+..+..+.+
T Consensus 307 ~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf 9994899299999965879799988999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.20 E-value=1.2e-07 Score=63.30 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=55.8
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCE--EEEEECCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 999999969992999988999288995179998199999499999--999975899988999889999799990899982
Q 000473 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY--IACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1471)
Q Consensus 639 ~~~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~--Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~ 716 (1471)
+..++....++.+.+||..+++.+..+. +...+..++|+||+++ +++++.| +.|++||+.+|+.++++.
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d--------~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT--------EVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCC--------CEEEEEECCCCCEEEEEC
T ss_conf 8247862589869999899996989866-8998258999989998999996799--------929999999998999988
Q ss_pred CCCCCCEEEEEE
Q ss_conf 778881223364
Q 000473 717 GTASHSMFDHFC 728 (1471)
Q Consensus 717 gH~a~vi~~~~~ 728 (1471)
++......+.+.
T Consensus 359 ~~g~~P~~l~~~ 370 (373)
T d2madh_ 359 ELGSGPQVLSVM 370 (373)
T ss_pred CCCCCCCEEEEE
T ss_conf 889898189984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1e-08 Score=70.25 Aligned_cols=122 Identities=10% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCE-EEEEECCCCEEEEECCCCC--E--EEEEE------CCCCCEEEEEECCCCCCCCCC
Q ss_conf 66899999127877656768979-9999789929999889994--6--99980------268878999988999999999
Q 000473 571 GAVLCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGN--L--ITVMH------HHVAPVRQIILSPPQTEHPWS 639 (1471)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~~-LvSGs~DgtI~iWDl~tg~--~--l~~l~------~H~~~V~si~~sP~~~~~~~~ 639 (1471)
.....++|+++ +.. ..+....+...+|+..... . ..... ........+.++++ +
T Consensus 177 ~~p~~i~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------~ 241 (333)
T d1ri6a_ 177 AGPRHMVFHPN---------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------G 241 (333)
T ss_dssp CCEEEEEECTT---------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT------S
T ss_pred CCCCEEEEECC---------CEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECC------C
T ss_conf 87527999602---------01478620466721788510355520210022343068776553126899515------6
Q ss_pred C-EEEEEECCCCEEEEECCCCCEEEE---ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE--ECCCCEEEE
Q ss_conf 9-999996999299998899928899---5179998199999499999999975899988999889999--799990899
Q 000473 640 D-CFLSVGEDFSVALASLETLRVERM---FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW--DVKTGARER 713 (1471)
Q Consensus 640 ~-~l~S~s~DgsV~lwdl~t~~~i~~---~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IW--Di~tg~li~ 713 (1471)
+ .++....++.+.+|++........ .......+..++|+|+|++|++++.+ ++.|.+| |.++|.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-------~~~v~v~~id~~tG~l~~ 314 (333)
T d1ri6a_ 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-------SHHISVYEIVGEQGLLHE 314 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-------TCEEEEEEEETTTTEEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECC-------CCEEEEEEEECCCCCEEE
T ss_conf 7205504568827878873999789999996789976289990798999999889-------993999999799996899
Q ss_pred E
Q ss_conf 9
Q 000473 714 V 714 (1471)
Q Consensus 714 ~ 714 (1471)
.
T Consensus 315 ~ 315 (333)
T d1ri6a_ 315 K 315 (333)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.94 E-value=1.4e-06 Score=56.15 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=65.9
Q ss_pred CCEEEEEECCCCEEEE--ECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC-C---EEEE--ECCCCCEE
Q ss_conf 9799999789929999--8899946999802688789999889999999999999996999-2---9999--88999288
Q 000473 591 NEVLVSGSMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-S---VALA--SLETLRVE 662 (1471)
Q Consensus 591 ~~~LvSGs~DgtI~iW--Dl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~Dg-s---V~lw--dl~t~~~i 662 (1471)
+.++.....|+...+| +...+. ...+..+...|..+. .++. ...++++..++ + -.|| ++..+...
T Consensus 332 ~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~-~~d~-----~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~ 404 (470)
T d2bgra1 332 SFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-ALTS-----DYLYYISNEYKGMPGGRNLYKIQLSDYTKV 404 (470)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEE-EECS-----SEEEEEESCGGGCTTCBEEEEEETTCTTCE
T ss_pred CCEEEEECCCCCCEEEEEECCCCC-EEEECCCCEEEEEEE-EECC-----CEEEEEEECCCCCCCEEEEEEEECCCCCCE
T ss_conf 847987436757645999526873-045116980487878-9779-----999999956899835179999988899860
Q ss_pred EEE----CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 995----17999819999949999999997589998899988999979999089998277
Q 000473 663 RMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1471)
Q Consensus 663 ~~~----~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH 718 (1471)
..+ .+|...+..+.|+|+++|++..+.. ...-.+.+|+..+|+.++.+...
T Consensus 405 ~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~-----~~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 405 TCLSCELNPERCQYYSVSFSKEAKYYQLRCSG-----PGLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp EESSTTTSTTTBCBEEEEECTTSSEEEEEECS-----BSSCEEEEEETTTTEEEEEEECC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEECC
T ss_conf 57035435888987999999899999998328-----99981999998999899998063
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.86 E-value=3e-07 Score=60.60 Aligned_cols=57 Identities=5% Similarity=-0.040 Sum_probs=25.3
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC--EEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 99998899946999802688789999889999999999--99999699929999889992889951
Q 000473 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD--CFLSVGEDFSVALASLETLRVERMFP 666 (1471)
Q Consensus 603 I~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~--~l~S~s~DgsV~lwdl~t~~~i~~~~ 666 (1471)
|.+||..+++.+..+.. ...+..+.|+|+ ++ .+++...|+.|.+||..+++.++.++
T Consensus 296 v~v~D~~t~~~~~~~~~-~~~~~~~a~spD------G~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 296 TSSVTASVGQTSGPISN-GHDSDAIIAAQD------GASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEESSSCCEEECCEE-EEEECEEEECCS------SSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEECCCCCEEEEECC-CCCEEEEEECCC------CCEEEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 99998999948689558-996517999989------998999994899969999899997999987
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.69 E-value=3.4e-07 Score=60.20 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=64.8
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCC----C
Q ss_conf 999999699199998045434799988433587616899825886689999912787765676897999997899----2
Q 000473 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC----S 602 (1471)
Q Consensus 527 ~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~Dg----t 602 (1471)
.+.....||...++.++. ..... ..+..+...|..+ ++++ .+...+++..++ .
T Consensus 334 ~~~~s~~dg~~~ly~~~~-------------~g~~~-~~lt~g~~~v~~~-~~~d--------~~~iyf~a~~~~~~p~~ 390 (470)
T d2bgra1 334 YKIISNEEGYRHICYFQI-------------DKKDC-TFITKGTWEVIGI-EALT--------SDYLYYISNEYKGMPGG 390 (470)
T ss_dssp EEEEECTTSCEEEEEEET-------------TCSCC-EESCCSSSCEEEE-EEEC--------SSEEEEEESCGGGCTTC
T ss_pred EEEEECCCCCCEEEEEEC-------------CCCCE-EEECCCCEEEEEE-EEEC--------CCEEEEEEECCCCCCCE
T ss_conf 798743675764599952-------------68730-4511698048787-8977--------99999999568998351
Q ss_pred EEEE--ECCCCCEEEEE----ECCCCCEEEEEECCCCCCCCCCCEEE---EEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 9999--88999469998----02688789999889999999999999---9969992999988999288995179
Q 000473 603 IRIW--DLGSGNLITVM----HHHVAPVRQIILSPPQTEHPWSDCFL---SVGEDFSVALASLETLRVERMFPGH 668 (1471)
Q Consensus 603 I~iW--Dl~tg~~l~~l----~~H~~~V~si~~sP~~~~~~~~~~l~---S~s~DgsV~lwdl~t~~~i~~~~gh 668 (1471)
-.+| ++..+.....+ ..|...+..+.|+|+ +++++ ++..+..+.+|+..+++.++.+..+
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpd------gky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 391 RNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKE------AKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp BEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTT------SSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred EEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCC------CCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 799999888998605703543588898799999989------999999832899981999998999899998063
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.48 E-value=3.9e-06 Score=53.19 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=35.3
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCEEEEECCCCC-EEE-EEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 9299998899928899517999819999949999-999-9975899988999889999799990899982778
Q 000473 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIA-CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1471)
Q Consensus 649 gsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~-~Lv-tgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~ 719 (1471)
..+.+||..+++.+..+.. ...+..+.|+||++ +++ ++..| +.|++||..+|+.++.+....
T Consensus 294 ~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~--------~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 294 ENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGT--------EVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTT--------TEEEEEESSSCEEEEECCCCS
T ss_pred CEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCC--------CEEEEEECCCCCEEEEEECCC
T ss_conf 6499998999948689558-996517999989998999994899--------969999899997999987999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.13 E-value=0.0002 Score=41.92 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=73.0
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCC-EEEEEECCCCEEEEECCCCC-----------EEEEEECCCCCEEEEE
Q ss_conf 16899825886689999912787765676897-99999789929999889994-----------6999802688789999
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGN-----------LITVMHHHVAPVRQII 628 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~-~LvSGs~DgtI~iWDl~tg~-----------~l~~l~~H~~~V~si~ 628 (1471)
.....+..... ...+.++|| ++ ++++|..|.+|.+||+.+.. .+.-...-.-......
T Consensus 249 ~v~~~IPvgks-PhGv~vSPD---------Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~ 318 (441)
T d1qnia2 249 EFTRYIPVPKN-PHGLNTSPD---------GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT 318 (441)
T ss_dssp SSEEEECCBSS-CCCEEECTT---------SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE
T ss_pred CEEEEEECCCC-CCCCEECCC---------CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCE
T ss_conf 06899717988-667268999---------87899907759938999832244575256884247996014554766522
Q ss_pred ECCCCCCCCCCCEEEEEECCCCEEEEECCC----------CCEEEEE-----CCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 889999999999999996999299998899----------9288995-----1799981999994999999999758
Q 000473 629 LSPPQTEHPWSDCFLSVGEDFSVALASLET----------LRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 629 ~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t----------~~~i~~~-----~gh~~~V~~V~wspdg~~Lvtgs~D 690 (1471)
|.++ ++.+.|...|..|..|++.. ...+..+ +||...+....++|+|+||++++.-
T Consensus 319 fd~~------g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~ 389 (441)
T d1qnia2 319 FDGR------GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF 389 (441)
T ss_dssp ECSS------SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred ECCC------CEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 6578------5599852443168972354221332267776568645326689877524542238988489965744
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.06 E-value=0.00026 Score=41.09 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCE-EEEEECCCCEEEEECCCCC---------
Q ss_conf 979999978992999988999469998026887899998899999999999-9999699929999889992---------
Q 000473 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC-FLSVGEDFSVALASLETLR--------- 660 (1471)
Q Consensus 591 ~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~-l~S~s~DgsV~lwdl~t~~--------- 660 (1471)
++++..+ .++.+.+++....+.+..+..... ...+.++|+ +++ ++++..|++|.+||+++..
T Consensus 229 Gk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPD------Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 229 GNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPD------GKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp TCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTT------SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred CCEEEEC-CCCCEEEECCCCCCEEEEEECCCC-CCCCEECCC------CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCC
T ss_conf 9999969-998289980368706899717988-667268999------87899907759938999832244575256884
Q ss_pred --EEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf --88995179998199999499999999975899988999889999799
Q 000473 661 --VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 661 --~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
++.-.....-.+....|++++..+.+...| ..|..|++.
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~d--------s~v~kw~~~ 341 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFID--------SQVCKWNIA 341 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTT--------TEEEEEEHH
T ss_pred CEEEEEECCCCCCCCCCEECCCCEEEECCCCC--------CEEEEECCC
T ss_conf 24799601455476652265785599852443--------168972354
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.22 E-value=0.0041 Score=33.15 Aligned_cols=121 Identities=12% Similarity=-0.012 Sum_probs=73.6
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCE-EEEEECCCCEEEEECCCCCEEEEEEC-------------------CCCCEEEEE
Q ss_conf 8866899999127877656768979-99997899299998899946999802-------------------688789999
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHH-------------------HVAPVRQII 628 (1471)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~-LvSGs~DgtI~iWDl~tg~~l~~l~~-------------------H~~~V~si~ 628 (1471)
.......+.|+|+ +++ .++.-.+++|.+|++..+........ +......+.
T Consensus 191 ~g~gPr~i~f~pd---------g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 261 (365)
T d1jofa_ 191 PGDHPRWVAMHPT---------GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp TTCCEEEEEECTT---------SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred CCCCEEEEEECCC---------CCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 8874089998899---------8669995158998999995598753778731240245565566654444357763169
Q ss_pred ECCCCCCCCCCCEEEEEE-CCC-----CEEEEECCCCCEE-E-----EECCCCCCCEEEEECC-CCCEEEEEECCCCCCC
Q ss_conf 889999999999999996-999-----2999988999288-9-----9517999819999949-9999999975899988
Q 000473 629 LSPPQTEHPWSDCFLSVG-EDF-----SVALASLETLRVE-R-----MFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTS 695 (1471)
Q Consensus 629 ~sP~~~~~~~~~~l~S~s-~Dg-----sV~lwdl~t~~~i-~-----~~~gh~~~V~~V~wsp-dg~~Lvtgs~D~s~~~ 695 (1471)
++|+ ++.+.... .+. .|..|++.....+ + ........+..+.++| +|++|+++..+
T Consensus 262 ~spd------G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~----- 330 (365)
T d1jofa_ 262 LTFS------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----- 330 (365)
T ss_dssp ECTT------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-----
T ss_pred ECCC------CCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECC-----
T ss_conf 9899------99789971357875422799998568871446767667776799864789648999999999679-----
Q ss_pred CCCCEEEEEECCCCEE
Q ss_conf 9998899997999908
Q 000473 696 DAVDVLFIWDVKTGAR 711 (1471)
Q Consensus 696 D~dg~I~IWDi~tg~l 711 (1471)
++.|.+|++....+
T Consensus 331 --s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 331 --EGWLEIYRWKDEFL 344 (365)
T ss_dssp --SCEEEEEEEETTEE
T ss_pred --CCEEEEEEEECCCC
T ss_conf --99499999828867
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.12 E-value=0.0052 Score=32.52 Aligned_cols=120 Identities=8% Similarity=0.054 Sum_probs=60.7
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEC-CCCEEEEECCC-CCEE--EEEE--CCCCCEEEEEECCCCCCCCCCCEE-EE
Q ss_conf 6899999127877656768979999978-99299998899-9469--9980--268878999988999999999999-99
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS-GNLI--TVMH--HHVAPVRQIILSPPQTEHPWSDCF-LS 644 (1471)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~LvSGs~-DgtI~iWDl~t-g~~l--~~l~--~H~~~V~si~~sP~~~~~~~~~~l-~S 644 (1471)
.+.++.|+|+ +++++..+. ...|.+|+... +... .... ........+.|+|+ ++.+ ++
T Consensus 146 h~h~v~~sPd---------G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd------g~~~yv~ 210 (365)
T d1jofa_ 146 GIHGMVFDPT---------ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------GNYLYAL 210 (365)
T ss_dssp CEEEEEECTT---------SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------SSEEEEE
T ss_pred CCEEEEECCC---------CCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCC------CCEEEEE
T ss_conf 1159788899---------998998207998799997068871665251111278874089998899------8669995
Q ss_pred EECCCCEEEEECCCCCEE--EE---ECC--------------CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 969992999988999288--99---517--------------99981999994999999999758999889998899997
Q 000473 645 VGEDFSVALASLETLRVE--RM---FPG--------------HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 645 ~s~DgsV~lwdl~t~~~i--~~---~~g--------------h~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWD 705 (1471)
.-.+++|.+|++...+.. .. .+. +......+.++|++++|+++...... ...+.|..|+
T Consensus 211 ~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~--~~~~~i~~~~ 288 (365)
T d1jofa_ 211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFK 288 (365)
T ss_dssp ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCC--CCCEEEEEEE
T ss_conf 15899899999559875377873124024556556665444435776316998999978997135787--5422799998
Q ss_pred CCC
Q ss_conf 999
Q 000473 706 VKT 708 (1471)
Q Consensus 706 i~t 708 (1471)
+..
T Consensus 289 ~~~ 291 (365)
T d1jofa_ 289 LRD 291 (365)
T ss_dssp ECT
T ss_pred ECC
T ss_conf 568
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.70 E-value=0.011 Score=30.23 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=49.7
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98429999990899969999289969999856899982022498405553435766403332135753222222356664
Q 000473 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 15 p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~ 94 (1471)
..+-+..++++|||+.++|...+++|..|+-. ++.. .+......+.+++
T Consensus 26 ~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~----g~~~---~~~~~~~~~~gla------------------------ 74 (302)
T d2p4oa1 26 VNTFLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQ---IHATVEGKVSGLA------------------------ 74 (302)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEE---EEEECSSEEEEEE------------------------
T ss_pred CCCCCCCEEECCCCCEEEEECCCCEEEEEECC----CCEE---EEECCCCCCCEEE------------------------
T ss_conf 99884787799998899996889989999089----9889---9971799853689------------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECC
Q ss_conf 45546999989998379909999969
Q 000473 95 MGKSSLDNGALISACTDGVLCVWSRS 120 (1471)
Q Consensus 95 ~~~~s~d~~~LvSas~DG~I~VWdv~ 120 (1471)
+.+++.++++...++.+.+|+..
T Consensus 75 ---~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 75 ---FTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp ---ECTTSCEEEEEECTTSCEEEEEE
T ss_pred ---ECCCCCEEEEECCCCEEEEEEEC
T ss_conf ---86778869983289537888710
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.32 E-value=0.019 Score=28.69 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=11.3
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEEECC
Q ss_conf 99988999999999999999699929999889
Q 000473 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1471)
Q Consensus 626 si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~ 657 (1471)
.+++.++ ++.+++...++.|..++..
T Consensus 212 gia~d~d------G~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 212 DFAFDVE------GNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp SEEEBTT------CCEEEECBTTCCEEEECTT
T ss_pred CEEECCC------CCEEEEECCCCCEEEECCC
T ss_conf 2378799------9999997489918998789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.11 E-value=0.025 Score=27.98 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 588668999991278776567689799999789929999889994699980--268878999988999999999999999
Q 000473 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 568 gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~--~H~~~V~si~~sP~~~~~~~~~~l~S~ 645 (1471)
.+......+++.++ ++.+++....+.|.++|. .++.+..+- ++......+++.++ ++.+++-
T Consensus 154 ~~~~~~~~i~~d~~---------g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~------G~i~Vad 217 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDK---------QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN------GEILIAD 217 (279)
T ss_dssp TTCSSEEEEEECSS---------SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT------CCEEEEE
T ss_pred CCCCCCCEEEECCC---------EEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCC------CEEEEEE
T ss_conf 10256624320120---------017862013551002304-7944453011321148762323147------8699997
Q ss_pred EC-CCCEEEEECCCCCEEEEECCC--CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCE
Q ss_conf 69-992999988999288995179--998199999499999999975899988999889999799990
Q 000473 646 GE-DFSVALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1471)
Q Consensus 646 s~-DgsV~lwdl~t~~~i~~~~gh--~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~ 710 (1471)
.. ++.|.+++. +++.+..+... ...+..|++.|++. |++...+ ..|++|...+..
T Consensus 218 ~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n--------~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 218 NHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLASKD--------YRLYIYRYVQLA 275 (279)
T ss_dssp CSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETT--------TEEEEEECSCCC
T ss_pred CCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCC-EEEEECC--------CEEEEEEEEEEC
T ss_conf 899808999999-999999996888889883799908991-9999189--------969998722035
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.074 Score=24.84 Aligned_cols=44 Identities=5% Similarity=0.049 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 9981999994999999999758999889998899997999908999827
Q 000473 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 669 ~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~g 717 (1471)
......+.|+|+++|++..|.. -+. -.+++++..+++.++.+..
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~----~~~-P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEG----PGV-PMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCS----SSS-CCEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEEEC----CCC-CEEEEEECCCCCEEEEECC
T ss_conf 8987999999999999998006----999-8499999999979999738
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.27 E-value=0.091 Score=24.25 Aligned_cols=103 Identities=6% Similarity=0.051 Sum_probs=61.0
Q ss_pred EEEEEECCCCEEEEECCCCCEEE------EEEC-CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 99999789929999889994699------9802-6887899998899999999999999969992999988999288995
Q 000473 593 VLVSGSMDCSIRIWDLGSGNLIT------VMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1471)
Q Consensus 593 ~LvSGs~DgtI~iWDl~tg~~l~------~l~~-H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~ 665 (1471)
+.++-+..+.|..+|+.....+. .+.. +.+..-.+++..+ ++.+++....+.|..|+.+.++.+..+
T Consensus 190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~------GnlyVa~~~~g~I~~~dp~~g~~~~~i 263 (314)
T d1pjxa_ 190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED------NNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT------CCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred EEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 99986024311776116765430156899713356664102578347------857999827999999969999799999
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 1799981999994999999999758999889998899997999
Q 000473 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1471)
Q Consensus 666 ~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~t 708 (1471)
......+++++|.|+++.|++...+ ++.|+..++..
T Consensus 264 ~~p~~~~t~~afg~d~~~lyVt~~~-------~g~i~~~~~~~ 299 (314)
T d1pjxa_ 264 RCPFEKPSNLHFKPQTKTIFVTEHE-------NNAVWKFEWQR 299 (314)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETT-------TTEEEEEECSS
T ss_pred ECCCCCEEEEEEECCCCEEEEEECC-------CCCEEEEECCC
T ss_conf 7999987899992898999999878-------99199997899
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.096 Score=24.10 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=12.4
Q ss_pred EEEEECCCCEEEEEECCEE
Q ss_conf 9999219969999909849
Q 000473 283 LVSVATCGNIIALVLKDHC 301 (1471)
Q Consensus 283 ~is~s~~g~~i~~~~~~~~ 301 (1471)
...++|+|+.++.+..+..
T Consensus 118 ~~~wSPDG~~iafv~~~nl 136 (465)
T d1xfda1 118 YAGWGPKGQQLIFIFENNI 136 (465)
T ss_dssp BCCBCSSTTCEEEEETTEE
T ss_pred EEEECCCCCEEEEEECCEE
T ss_conf 0024267856999961329
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.40 E-value=0.13 Score=23.22 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=51.5
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 89999912787765676897999997899299998899946999802688789999889999999999999996999299
Q 000473 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1471)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~ 652 (1471)
...+++.++ ++.+++...++.|..++...................+++.++ ++++++-...+.|.
T Consensus 142 p~~i~~~~~---------g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~------g~l~vsd~~~~~i~ 206 (260)
T d1rwia_ 142 PDGVAVDNS---------GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA------GTVYVTEHNTNQVV 206 (260)
T ss_dssp CCEEEECTT---------CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT------CCEEEEETTTTEEE
T ss_pred CCEEEECCC---------CCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEE------EEEEEEECCCCEEE
T ss_conf 520545489---------988641025643322234310012221011478763123100------01343214899899
Q ss_pred EEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 99889992889951799981999994999999999758
Q 000473 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1471)
Q Consensus 653 lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D 690 (1471)
.++................+..|++++++..+++-..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 207 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp EECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred EEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 99699976999706998981799990899999997999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.94 E-value=0.15 Score=22.78 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 668999991278776567689799999789929999889994699980--268878999988999999999999999699
Q 000473 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1471)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~--~H~~~V~si~~sP~~~~~~~~~~l~S~s~D 648 (1471)
.....+++.++ +.+++.......+.+++. .++.+..+. .+......+++.++ ++.+++....
T Consensus 114 ~~p~~~avd~~---------G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~------g~i~v~d~~~ 177 (279)
T d1q7fa_ 114 QHPRGVTVDNK---------GRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK------QEIFISDNRA 177 (279)
T ss_dssp SCEEEEEECTT---------SCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS------SEEEEEEGGG
T ss_pred CCCCEECCCCC---------CCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCC------EEEEEEECCC
T ss_conf 25420000147---------847999632632567626-8750100220010256624320120------0178620135
Q ss_pred CCEEEEECCCCCEEEEEC--CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 929999889992889951--799981999994999999999758999889998899997999908999827
Q 000473 649 FSVALASLETLRVERMFP--GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1471)
Q Consensus 649 gsV~lwdl~t~~~i~~~~--gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~g 717 (1471)
+.|.+++.. ++.+..+. +....+..|+++++++.+++-..+ ++.|.+++. +|+.++++..
T Consensus 178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-------~~~v~~f~~-~G~~~~~~~~ 239 (279)
T d1q7fa_ 178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-------NFNLTIFTQ-DGQLISALES 239 (279)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-------SCEEEEECT-TSCEEEEEEE
T ss_pred CCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC-------CCEEEEECC-CCCEEEEEEC
T ss_conf 510023047-9444530113211487623231478699997899-------808999999-9999999968
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.76 E-value=0.16 Score=22.62 Aligned_cols=113 Identities=9% Similarity=-0.023 Sum_probs=47.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCE
Q ss_conf 68999991278776567689799999789929999889994699980268878999988999999999999999699929
Q 000473 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1471)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV 651 (1471)
....+++.++ ++++++-.....+..++............-......+.+.|+ ++.+++...++.|
T Consensus 99 ~p~~iavd~~---------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~------g~~~v~~~~~~~i 163 (260)
T d1rwia_ 99 YPEGLAVDTQ---------GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS------GNVYVTDTDNNRV 163 (260)
T ss_dssp SEEEEEECTT---------CCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTT------CCEEEEEGGGTEE
T ss_pred ECCCCCCCCC---------CEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCC------CCEEEECCCCCCC
T ss_conf 0000024553---------205750335553211232222012232036677520545489------9886410256433
Q ss_pred EEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 99988999288995179998199999499999999975899988999889999799
Q 000473 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1471)
Q Consensus 652 ~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~ 707 (1471)
..++.+..............+..+++++++.++++...+ +.|+.++..
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~--------~~i~~~~~~ 211 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT--------NQVVKLLAG 211 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT--------TEEEEECTT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCC--------CEEEEEECC
T ss_conf 222343100122210114787631231000134321489--------989999699
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.22 Score=21.77 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=39.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEE-ECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 88668999991278776567689799999-78992999988999469998026887899998899999999999999969
Q 000473 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1471)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~LvSG-s~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~ 647 (1471)
+........++|+ +..++.. ...+...+|.............+.+......|+|+ |+.|+-.+.
T Consensus 169 ~~~~~~~~~~spd---------g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPD------G~~i~f~s~ 233 (269)
T d2hqsa1 169 EGSQNQDADVSSD---------GKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN------GTMVIYSSS 233 (269)
T ss_dssp SSSEEEEEEECTT---------SSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT------SSEEEEEEE
T ss_pred CCCCCCCCCCCCC---------CCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEECCC------CCEEEEEEC
T ss_conf 1222234322345---------4305778605880125676035644058506865445589899------999999981
Q ss_pred ---CCCEEEEECCCCCEEEEECCCCCCCEEEEECC
Q ss_conf ---99299998899928899517999819999949
Q 000473 648 ---DFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1471)
Q Consensus 648 ---DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wsp 679 (1471)
...+.++++..+...+ +....+.+...+|+|
T Consensus 234 ~~~~~~l~~~~~dg~~~~~-lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 234 QGMGSVLNLVSTDGRFKAR-LPATDGQVKFPAWSP 267 (269)
T ss_dssp ETTEEEEEEEETTSCCEEE-CCCSSSEEEEEEECC
T ss_pred CCCCCEEEEEECCCCCEEE-EECCCCCEEEEEECC
T ss_conf 7998479999999997799-857998588378289
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=0.36 Score=20.26 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9808916799829999998644148999153421246
Q 000473 1264 VVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLH 1300 (1471)
Q Consensus 1264 ~i~~~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~~l~ 1300 (1471)
++...+....+++..++..++.+|.-.+...|+..+.
T Consensus 989 ~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~ 1025 (1207)
T d1u6gc_ 989 TISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025 (1207)
T ss_dssp GCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9986655467899999999999867999899999999
|