Citrus Sinensis ID: 000502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------146
MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYLLPCSGSSGNSSKKEIKSESIRSFQHQVPQDTWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
cccccccccEEEEEEEEEEEEccccccccccccccccccccccccEEEEEcccccccEEEEEEcccccEEEEEccccHHHHHHccccccEEEEEEEEEEEEcccccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEccccccccccEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHccEEEccccccccccccccccccEEEccccccccccEEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccEEEEEc
cccccccccEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEccHHHHHHHHHHccccEEEEEEEEEEEEcccccccccEEEEEEEEccHHHcccccccccccccccccEEEEEEEEccccccEEEEccccccccccccccccccEEEEEccccHHHccccccccHHHcccccccccccccccccccccccccccHccccccccccccEEEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccHHHccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHcccccccHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccccccHHHHHHHHHHHcccccccccEEEEEcccccccccccccHHHcccccccEcccccccccEEEEEcccccccccccccccccEEEccccccccccccccccHHcccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEcccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccccccHccEcccccEEEEcccccccccccccccccccccHHEEEccEccccccccccccEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHccEEEEcccccccccccccccccEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccccccEEEcccccEEEcHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEEccEccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEc
madsqpdsnifsvrivsidhymappipgydicysslqggkvnevpvirvygstpagqktclhihralpylyvpcadipvqlrqeddgYMHAISLALEKALKVkgsagskrqhvhECSLvrakkggavfdkslqpheshiPFLLQFLVDynlygmghlhlsklkfrhpvpdaffprkfnysskqasadfqvigcgsypmhlmgHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFlyddcvgdiVNQRLMMYTSLSQTRSDVKMVQSLVPiwevcshpiyklfniqyiyplvnfttFQEEYertgineavmapdpgkprpqdVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACatdeenliklgpanydykdpeyltclkegkilsalapqglvhqekislmpskgkdtcpelpfggeihssemvgapgqkeplifgidipqatdTEALGLLKWLATSQAaedlnsddellhetilspllpettIDKVLEKANTDYERESQKECQDILDSIEDevnvdgleernsstvdpsnhpetsshkkipqidgssddlyllpcsgssgnsskkeikSESIRSFqhqvpqdtwtnaaskcnvkkklwgslpfsvseQFNKDIETVSCNISslcvtevkdhgatgslvgnelgksfdaleredadahdikeatavtggsvrdLMRRkrsyressecepprvkrvnvtGEQKNALSMCEKQLEfdtlqndecekcplkggtgistvckenmespspfdtkkedasvsvgdwkadnckeskfdatsveprelqsdhpnnndsnlnqgsltgvptlylndgsclymlrppfsppsvdsvHKWLlhddkgasgdmdkasvehsslkgsdirpVLEEMHQEADemisteptpdlngvTAIMhneghiaepnacadclqdisqisgpdgrskptplsqigfqdpasagageqLTLLSIEVQaesrgdlrpdprydsiNVVALAFENDSDHAVEIYVLLYCKseshqrslvgipdckvfvcskeihLFSHFIKILcsfdpdilmgwdiqggsLGFLAERAAHLGIGLlndisrtpleskiaagdseisergitdnmlaePVVAESllakdaiiedewgrthasglhvggrIVLNVWRLMRGEVKLNMYTVEAVAETVLrrkipsipfrvLTKWfasgpgraryrCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQnylaispgnhqvasqpameclplvmepesgfyadpvvvldfqslypsMMIAYNLCFCTclgkilpskentlgvssfrpdlhvlrdlkdellippngvmyvppkvrkgvlPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYgytaagfsgrmpcAELADSIVQCGRSTLEKAISFVNENEKWKAKViygdtdrytvci
madsqpdsnIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGINEavmapdpgkprPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATdeenliklgpanydyKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETilspllpettIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLeernsstvdpsnhpetsshkkipqidGSSDDLYLLPCSGSSGNSSKKEIKSESIRSfqhqvpqdtwtNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREdadahdikeatavtggsvrdlmrrkrsyressecepprvkrvnvtgEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMespspfdtkkedaSVSVGDWKADNCKESKFDATSVeprelqsdhpnnndsnlnqgSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEhsslkgsdirPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAesrgdlrpdprYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAagdseisergitdnMLAEPVVAESLLAKDAIIEDEWGrthasglhvggrivLNVWRLMRGEVKLNMYTVEAVAetvlrrkipsipfrvltkwfasgpgraryRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDellippngvmyvppkvrkgvLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAIsfvnenekwkakviygdtdrytvci
MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYLLPCsgssgnsskkeiksesirsFQHQVPQDTWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
*********IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVK********HVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGIN***************VLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQ************************************PLIFGIDIPQATDTEALGLLKWLATSQAA*******ELLHETILSPLLPETTIDKV************************************************************************************************TWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGN************************************************************************F*******CEKCPLK****I****************************************************************LTGVPTLYLNDGSCLYMLRPPFS***VDSVHKWLL**************************************************VTAIMHNEGHIAEPNACADCLQ******************************************************YDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL**************GITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVC*
*********IFSVRIVSIDHYMAPPIPGYDI*********VNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMM****************LVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTG*********************************************************CATDEENLIKLGP****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLL*************************************************G**AIMHNEGH********DCLQDISQISGPDGRSKPT*************GAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTP******************************************GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA******************LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQ**********ILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
********NIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALK************HECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANT**********QDILDSIEDEVNVDGL**********************PQIDGSSDDLYLLPCSGS***********************DTWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMR***************VKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENM****************VGDWKADNCKES***************HPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
******DSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYP**NFTTFQE**E*TGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGE*******************CATDEENLIKLGPANYDYKDPEYLTCLK************************************************************PQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDE************************************************************************************************************************************************************************************************************************************************************CKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYERTGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYLLPCSGSSGNSSKKEIKSESIRSFQHQVPQDTWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1459 2.2.26 [Sep-21-2011]
Q61493 3122 DNA polymerase zeta catal yes no 0.348 0.163 0.429 1e-121
O60673 3130 DNA polymerase zeta catal yes no 0.348 0.162 0.424 1e-119
P14284 1504 DNA polymerase zeta catal yes no 0.326 0.316 0.382 1e-106
Q9P6L6 1480 DNA polymerase zeta catal yes no 0.334 0.329 0.372 7e-95
P46588 1038 DNA polymerase delta cata N/A no 0.305 0.429 0.279 4e-47
P15436 1097 DNA polymerase delta cata no no 0.303 0.403 0.281 3e-46
P30315 1094 DNA polymerase delta cata N/A no 0.276 0.368 0.294 2e-45
Q9LVN7 1095 DNA polymerase delta cata no no 0.300 0.400 0.292 1e-44
P54358 1092 DNA polymerase delta cata no no 0.304 0.406 0.278 2e-44
P52431 1105 DNA polymerase delta cata no no 0.300 0.397 0.290 3e-44
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 Back     alignment and function desciption
 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/556 (42%), Positives = 332/556 (59%), Gaps = 47/556 (8%)

Query: 923  QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
            ++ SQI GP    +    +S    Q+  +    + LTL+S+E+ A +R DL+PDP +D I
Sbjct: 2254 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2313

Query: 982  NVVALAFENDS-------DHAVEIYVLLYCKSESHQ--RSLV------GIPDCKVFVCSK 1026
              +     +D+            + V+   K+ +HQ  RS        GI   +V   + 
Sbjct: 2314 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITGLEVTYAAD 2373

Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAG 1086
            E  LF     I+  +DPDIL+G++IQ  S G+L +RAA L + L   ISR P        
Sbjct: 2374 EKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP-------- 2425

Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEV 1146
            D +I  R            AE          D++G    S +++ GRI LN+WR+MR EV
Sbjct: 2426 DDKIENR----------FAAE---------RDDYGSDTMSEINIVGRITLNLWRIMRNEV 2466

Query: 1147 KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQL 1206
             L  YT E V+  VL ++ P   FRVL+ WF +     R++ V++ V R + NL+++ QL
Sbjct: 2467 ALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQL 2526

Query: 1207 DMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMEC 1266
            D+I +TSE+AR+FGI F  VL+RGSQYRVESM+LR+A   NY+ ++P   Q +   A +C
Sbjct: 2527 DLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQC 2586

Query: 1267 LPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKIL---PSKENTLGVSSFR 1323
            +PL+MEPES FY++ V+VLDFQSLYPS++IAYN CF TCLG +       E   G +S R
Sbjct: 2587 VPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLR 2646

Query: 1324 PDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQIL 1383
                +L  ++ ++ + PNGV +V P VRKGVLPR+LEEIL TR+MVKQ++K      + L
Sbjct: 2647 VPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYK-QDRAL 2705

Query: 1384 HRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW 1443
             R+ NARQL LKLIANVT+GYTAA FSGRMPC E+ DSIV   R TLE+AI  VN+ +KW
Sbjct: 2706 SRMLNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKW 2765

Query: 1444 KAKVIYGDTDRYTVCI 1459
             A+V+YGDTD   V +
Sbjct: 2766 GARVVYGDTDSMFVLL 2781
Interacts with MAD2L2 to form the error prone DNA polymerase zeta involved in translesion DNA synthesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 Back     alignment and function description
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 Back     alignment and function description
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 Back     alignment and function description
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3 PE=3 SV=2 Back     alignment and function description
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4 Back     alignment and function description
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum (isolate K1 / Thailand) GN=POLD1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana GN=POLD1 PE=2 SV=2 Back     alignment and function description
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster GN=DNApol-delta PE=2 SV=2 Back     alignment and function description
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1459
296088359 1732 unnamed protein product [Vitis vinifera] 0.886 0.747 0.523 0.0
218200227 1797 hypothetical protein OsI_27267 [Oryza sa 0.925 0.751 0.436 0.0
255542648 2066 DNA polymerase zeta catalytic subunit, p 0.459 0.324 0.701 0.0
359487804 2002 PREDICTED: uncharacterized protein LOC10 0.442 0.322 0.701 0.0
356504040 2793 PREDICTED: uncharacterized protein LOC10 0.436 0.228 0.673 0.0
12324676 1871 putative DNA polymerase zeta catalytic s 0.437 0.340 0.643 0.0
42563023 1890 DNA polymerase zeta subunit [Arabidopsis 0.437 0.337 0.643 0.0
334183720 1916 DNA polymerase zeta subunit [Arabidopsis 0.437 0.332 0.643 0.0
3176661 1894 Similar to putative DNA polymerase gb|M2 0.437 0.336 0.643 0.0
297841441 1899 hypothetical protein ARALYDRAFT_894489 [ 0.438 0.337 0.640 0.0
>gi|296088359|emb|CBI36804.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1412 bits (3654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 806/1539 (52%), Positives = 962/1539 (62%), Gaps = 245/1539 (15%)

Query: 1    MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
            M +SQ D+ IFSVRIVS+D+YMAPPIP  DICYSS QGG V EVPVIR+YGSTP GQKTC
Sbjct: 1    MENSQDDAKIFSVRIVSMDYYMAPPIPDLDICYSSFQGGMVKEVPVIRIYGSTPVGQKTC 60

Query: 61   LHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVR 120
            LH+HRALPYLYVPC D+  Q  QE D Y HA+SL +EKALK+KG+AGSKRQHVH CSLVR
Sbjct: 61   LHVHRALPYLYVPCTDLMPQSPQEADTYTHAVSLGVEKALKLKGNAGSKRQHVHGCSLVR 120

Query: 121  AKK---------------------------------GGAVFDKSLQPHESHIPFLLQFLV 147
            AK                                  GG+V DKSLQPHESHIPFLLQFL+
Sbjct: 121  AKNFYGYHSSEELFVKIYLNISYHPHDVSRAANLLLGGSVLDKSLQPHESHIPFLLQFLI 180

Query: 148  DYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQA--SADFQVIGCGSYPMHLMGHQI 205
            DYNLYGMGHLHLSK+KFRHPVPD F  RK NY+ +Q     DF  I       HL     
Sbjct: 181  DYNLYGMGHLHLSKMKFRHPVPDVFSSRKVNYNGQQKLEPDDFACISA-----HLQADSS 235

Query: 206  KTLSGLNIKVFLSLKEMLQWM--------------VCLIHCSATDIFASSIFLYDDCVGD 251
               + L+  V++S      WM              +C     +T          D  V +
Sbjct: 236  GD-TCLSSPVWISSTIPGGWMWQFSSQLDASPGQGICSPKRQSTCELEG-----DAIVEE 289

Query: 252  IVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEEYER 311
            I+NQ+  +Y+SLSQT SDVKMV+SL+PIWE                         EE+ER
Sbjct: 290  ILNQQFKLYSSLSQTHSDVKMVRSLIPIWE-------------------------EEFER 324

Query: 312  TGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVAC 371
            TG++E  M PDPGKP P+DVLR+LS GLEFEN L E+C + ++                 
Sbjct: 325  TGMHEVAMPPDPGKPLPEDVLRSLSHGLEFENKLGELCNQAEK----------------- 367

Query: 372  ATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLMPSKGKDTCPEL 431
                                       + K +S ++ QG + +E    +PS+G+  C + 
Sbjct: 368  -------------------------FNQNKNISPVS-QGSLCEEDDDAIPSEGRGMCLQQ 401

Query: 432  PFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHE 491
                E   SE +G  G K             D EALGLL WLA+SQAAED+NSDDEL+ +
Sbjct: 402  LSVDERQRSENIGPSGLK-----------VADNEALGLLSWLASSQAAEDINSDDELVCQ 450

Query: 492  TILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNH 551
            TILSPLLP  TIDKVLEKAN DYE ESQ+ECQDILDS+ED  +  GL+ER S + D S+ 
Sbjct: 451  TILSPLLPTVTIDKVLEKANMDYENESQQECQDILDSVEDLADFKGLKERASCSTDHSHS 510

Query: 552  PETSSHKKIPQIDGSSDDLYLLPCSGSSGNSSKKEIKSESIRSFQHQVPQDTWTNAASKC 611
            P+TS  K IPQ+DGS DD      +  SGNSS+ E+KSE+ R  QHQV QDT  + ++K 
Sbjct: 511  PQTSLEKMIPQVDGSGDDP-----NDCSGNSSETEMKSETKRFSQHQVLQDTGASFSNKH 565

Query: 612  NVKKKLWGSLPFSVSEQ---FNKDIETVSC--NISSLCVTEVKDHGATGSLVGN-ELGKS 665
               + LWGSLP + +++   FN D    S    + S   T+       GSL+ N      
Sbjct: 566  KRNQSLWGSLPLTTTQKACDFNSDYSACSMYGKLPSFSSTD-------GSLLINISKDVQ 618

Query: 666  FDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALS 725
            FD   R D +       T  T GS R+      S   +   E  +     V   + +A S
Sbjct: 619  FDHCGRRDDEV-----GTEATAGS-RNFTITGHSQMNTGTKESLQPFNTEV---RDSAAS 669

Query: 726  MCEKQLEFDTLQNDECEKCP------LKGGTGISTVCKENME----------SPSPFDTK 769
            M +   EF   +   C+  P      LK  TG      E ++          S SPF+ +
Sbjct: 670  MVD--FEFSNCKEYACKPDPSTDVQFLKFDTGDKHFVDERLKQTKASASSCLSNSPFEHE 727

Query: 770  --------KEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVP 821
                     E     VGD     C+E K           +  +   ND N +Q    GVP
Sbjct: 728  MVFQGTILDEFIPFFVGD-----CQEEK-----------KVWNKCYNDLNNHQEVGMGVP 771

Query: 822  TLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGASGD-MDKASVEHSSLKGSDIRPVL 880
            T Y NDGS LY+L P FSPPS D VH+WLLHDD   S + +   SV H       ++PVL
Sbjct: 772  THYQNDGSFLYLLTPVFSPPSADCVHRWLLHDDTDTSAEPLPVGSVSH-------VKPVL 824

Query: 881  EEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPL 940
            ++ + E  + ++ +     + V      +G+I +   C +C QDISQISGP+ +SKPTPL
Sbjct: 825  DQQNHEIHDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISGPEEKSKPTPL 884

Query: 941  SQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYV 1000
            SQIGF+DPAS G G+Q+TLLSIE+QAESRGDLRPDPRYD+INV+ L  + D D A+E++V
Sbjct: 885  SQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVLLIQEDDDSALEVFV 944

Query: 1001 LLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLA 1060
            L     E  QR L GI  CKV V S+E  LF  FI I+CSFDPDIL+GWDIQGGSLGFLA
Sbjct: 945  LCRSNIEPCQRKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGWDIQGGSLGFLA 1004

Query: 1061 ERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEW 1120
            ERA+HL                              D ML E +V +S+L ++AIIEDEW
Sbjct: 1005 ERASHLA-----------------------------DEMLPENLVDDSVLLEEAIIEDEW 1035

Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
            GRTHASG+HVGGRIVLNVWRLMRGE+KLNMYT E+VAE VLR+KIPSI  RVLTKWF+SG
Sbjct: 1036 GRTHASGVHVGGRIVLNVWRLMRGEIKLNMYTAESVAEAVLRQKIPSIRNRVLTKWFSSG 1095

Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
            PGRARYR +EYV+ RAKLN EIMNQLDMINRTSELARVFGIDFFSVLSRGSQY VESM L
Sbjct: 1096 PGRARYRSIEYVIQRAKLNFEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYHVESMFL 1155

Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNL 1300
            RLAHTQN+LAISPG  QVA+QPAMECLPLVMEPESGFYADPVVVLDFQSLYPSM+IAYNL
Sbjct: 1156 RLAHTQNFLAISPGPQQVATQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAYNL 1215

Query: 1301 CFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLE 1360
            C+ TCLGK+ PSK + LGVS + PD H L DLKD++L+ PNGVMYVP K RKGVLPRLLE
Sbjct: 1216 CYSTCLGKVAPSKADVLGVSIYSPDPHALHDLKDQILLTPNGVMYVPSKARKGVLPRLLE 1275

Query: 1361 EILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELAD 1420
            EILSTRIMVK+A+KKL PSQQ+L RIFNARQLALKLIANVTYGYTAAG+SGRMPCAELAD
Sbjct: 1276 EILSTRIMVKKAMKKLVPSQQVLQRIFNARQLALKLIANVTYGYTAAGYSGRMPCAELAD 1335

Query: 1421 SIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
            SIVQCGR TLE AIS VN ++KWKAKVIYGDTD   V +
Sbjct: 1336 SIVQCGRRTLENAISLVNTHDKWKAKVIYGDTDSMFVLL 1374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|218200227|gb|EEC82654.1| hypothetical protein OsI_27267 [Oryza sativa Indica Group] gi|222637649|gb|EEE67781.1| hypothetical protein OsJ_25510 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255542648|ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis] gi|223548348|gb|EEF49839.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359487804|ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504040|ref|XP_003520807.1| PREDICTED: uncharacterized protein LOC100777934 [Glycine max] Back     alignment and taxonomy information
>gi|12324676|gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42563023|ref|NP_176917.2| DNA polymerase zeta subunit [Arabidopsis thaliana] gi|34330129|dbj|BAC82450.1| catalytic subunit of polymerase zeta [Arabidopsis thaliana] gi|332196534|gb|AEE34655.1| DNA polymerase zeta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183720|ref|NP_001185344.1| DNA polymerase zeta subunit [Arabidopsis thaliana] gi|332196535|gb|AEE34656.1| DNA polymerase zeta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3176661|gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from S. cerevisiae [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841441|ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arabidopsis lyrata subsp. lyrata] gi|297334443|gb|EFH64861.1| hypothetical protein ARALYDRAFT_894489 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1459
UNIPROTKB|F1LMP6 3118 Rev3l "DNA polymerase" [Rattus 0.232 0.108 0.527 1e-134
UNIPROTKB|F1M8G6 3132 Rev3l "DNA polymerase" [Rattus 0.232 0.108 0.527 1.1e-134
MGI|MGI:1337131 3122 Rev3l "REV3-like, catalytic su 0.232 0.108 0.527 7.6e-134
UNIPROTKB|E1BPY8 3133 REV3L "DNA polymerase" [Bos ta 0.232 0.108 0.521 3.8e-133
ZFIN|ZDB-GENE-050302-55 2953 rev3l "REV3-like, catalytic su 0.231 0.114 0.520 5.5e-132
UNIPROTKB|F1P7D5 3136 REV3L "DNA polymerase" [Canis 0.232 0.108 0.518 2.1e-131
UNIPROTKB|O60673 3130 REV3L "DNA polymerase zeta cat 0.350 0.163 0.416 1.4e-122
UNIPROTKB|F1NQT0 3100 REV3L "DNA polymerase" [Gallus 0.232 0.109 0.527 1e-120
UNIPROTKB|G4NL37 1782 MGG_02986 "DNA polymerase" [Ma 0.231 0.189 0.504 1.4e-117
ASPGD|ASPL0000070569 1681 uvsI [Emericella nidulans (tax 0.229 0.199 0.516 3.5e-115
UNIPROTKB|F1LMP6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
 Identities = 183/347 (52%), Positives = 243/347 (70%)

Query:  1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
             D++G    S +++ GRI LN+WR+MR EV L  YT E V+  VL ++ P   FRVL+ WF
Sbjct:  2434 DDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2493

Query:  1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
              +     R++ V++ V R + NL+++ QLD+I +TSE+AR+FGI F  VL+RGSQYRVES
Sbjct:  2494 DNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2553

Query:  1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
             M+LR+A   NY+ ++P   Q +   A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct:  2554 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2613

Query:  1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
             YN CF TCLG I  L    E   G +S R  PDL  L  ++ ++ + PNGV +V P VRK
Sbjct:  2614 YNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGVAFVKPSVRK 2671

Query:  1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
             GVLPR+LEEIL TR MVKQ++K      + L R+ NARQL LKLIANVT+GYT+A FSGR
Sbjct:  2672 GVLPRMLEEILKTRFMVKQSMKAYR-QDRALSRMLNARQLGLKLIANVTFGYTSANFSGR 2730

Query:  1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
             MPC E+ DSIV   R TLE+AI  VN+ +KW A+V+YGDTD   V +
Sbjct:  2731 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2777
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0016035 "zeta DNA polymerase complex" evidence=IEA
UNIPROTKB|F1M8G6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1337131 Rev3l "REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPY8 REV3L "DNA polymerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050302-55 rev3l "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7D5 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O60673 REV3L "DNA polymerase zeta catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQT0 REV3L "DNA polymerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G4NL37 MGG_02986 "DNA polymerase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000070569 uvsI [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OsI_27267
DNA polymerase (1831 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
OsI_30412
Os06g0168500 ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis [...] (766 aa)
      • 0.452
OsI_23262
Putative uncharacterized protein (174 aa)
      • 0.452
OsI_09340
Ribonucleoside-diphosphate reductase (EC 1.17.4.1); Provides the precursors necessary for DNA s [...] (676 aa)
      • 0.452
OsI_09344
Proliferating cell nuclear antigen (PCNA) (Cyclin); This protein is an auxiliary protein of DNA [...] (263 aa)
    • • 0.437

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1459
cd05534 451 cd05534, POLBc_zeta, DNA polymerase type-B zeta su 1e-125
smart00486474 smart00486, POLBc, DNA polymerase type-B family 2e-87
cd05778231 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' e 6e-72
COG0417 792 COG0417, PolB, DNA polymerase elongation subunit ( 4e-62
PTZ00166 1054 PTZ00166, PTZ00166, DNA polymerase delta catalytic 3e-56
pfam00136 458 pfam00136, DNA_pol_B, DNA polymerase family B 3e-54
cd05533 393 cd05533, POLBc_delta, DNA polymerase type-B delta 9e-43
cd00145 323 cd00145, POLBc, DNA polymerase type-B family catal 1e-39
PRK05762 786 PRK05762, PRK05762, DNA polymerase II; Reviewed 4e-37
cd05532 400 cd05532, POLBc_alpha, DNA polymerase type-B alpha 1e-31
cd05536 371 cd05536, POLBc_B3, DNA polymerase type-B B3 subfam 3e-24
TIGR00592 1172 TIGR00592, pol2, DNA polymerase (pol2) 1e-23
cd05160199 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea 1e-18
PRK05761 787 PRK05761, PRK05761, DNA polymerase I; Reviewed 5e-16
cd05531 352 cd05531, POLBc_B2, DNA polymerase type-B B2 subfam 2e-11
cd05530 372 cd05530, POLBc_B1, DNA polymerase type-B B1 subfam 6e-10
cd05537 371 cd05537, POLBc_Pol_II, DNA polymerase type-II subf 6e-10
cd05776234 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' 9e-08
PTZ001661054 PTZ00166, PTZ00166, DNA polymerase delta catalytic 1e-07
PHA03036 1004 PHA03036, PHA03036, DNA polymerase; Provisional 8e-07
cd05777230 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea 2e-06
TIGR00592 1172 TIGR00592, pol2, DNA polymerase (pol2) 2e-05
cd05538 347 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B 3e-05
pfam03104254 pfam03104, DNA_pol_B_exo1, DNA polymerase family B 9e-05
PHA02528 881 PHA02528, 43, DNA polymerase; Provisional 1e-04
cd05780195 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu 3e-04
cd05784193 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease 0.003
>gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain Back     alignment and domain information 
 Score =  396 bits (1019), Expect = e-125
 Identities = 144/229 (62%), Positives = 170/229 (74%), Gaps = 6/229 (2%)

Query: 1230 GSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQS 1289
            GSQ+RVESMLLRLA  +NY+  SP   QVA Q A+ECLPLVMEPESGFY+DPV+VLDFQS
Sbjct: 1    GSQFRVESMLLRLAKPENYILPSPSRQQVAQQRALECLPLVMEPESGFYSDPVIVLDFQS 60

Query: 1290 LYPSMMIAYNLCFCTCLGKILP-SKENTLGVSSF----RPDLHVLRDLKDELLIPPNGVM 1344
            LYPS+MIAYN C+ TCLG++   +     G         P    L  LKD++ I PNGVM
Sbjct: 61   LYPSIMIAYNYCYSTCLGRVEELNGGGKFGFLGVKLYLPPPPLDLLLLKDDVTISPNGVM 120

Query: 1345 YVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGY 1404
            +V   VRKG+LP++LEEIL TRIMVK+A+KK     + L RI +ARQLALKL+ANVTYGY
Sbjct: 121  FVKKSVRKGILPKMLEEILDTRIMVKKAMKKYKDD-KKLQRILDARQLALKLLANVTYGY 179

Query: 1405 TAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
            TAA FSGRMPC E+ADSIVQ GR TLE+AI  +    KW AKV+YGDTD
Sbjct: 180  TAASFSGRMPCVEIADSIVQTGRETLERAIELIESTPKWGAKVVYGDTD 228

DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. Length = 451
>gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family Back     alignment and domain information
>gnl|CDD|99821 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B Back     alignment and domain information
>gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain Back     alignment and domain information
>gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed Back     alignment and domain information
>gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) Back     alignment and domain information
>gnl|CDD|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed Back     alignment and domain information
>gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|222962 PHA03036, PHA03036, DNA polymerase; Provisional Back     alignment and domain information
>gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) Back     alignment and domain information
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain Back     alignment and domain information
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional Back     alignment and domain information
>gnl|CDD|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1459
KOG0968 1488 consensus DNA polymerase zeta, catalytic subunit [ 100.0
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 100.0
KOG0969 1066 consensus DNA polymerase delta, catalytic subunit 100.0
PHA02528 881 43 DNA polymerase; Provisional 100.0
PHA03036 1004 DNA polymerase; Provisional 100.0
PRK05762 786 DNA polymerase II; Reviewed 100.0
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 100.0
smart00486471 POLBc DNA polymerase type-B family. DNA polymerase 100.0
PRK05761 787 DNA polymerase I; Reviewed 100.0
COG0417 792 PolB DNA polymerase elongation subunit (family B) 100.0
PHA03334 1545 putative DNA polymerase catalytic subunit; Provisi 100.0
KOG0970 1429 consensus DNA polymerase alpha, catalytic subunit 100.0
PHA02524498 43A DNA polymerase subunit A; Provisional 100.0
cd05534 451 POLBc_zeta DNA polymerase type-B zeta subfamily ca 100.0
cd05533 393 POLBc_delta DNA polymerase type-B delta subfamily 100.0
PF00136 466 DNA_pol_B: DNA polymerase family B Several related 100.0
cd00145 323 POLBc DNA polymerase type-B family catalytic domai 100.0
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 100.0
cd05532 400 POLBc_alpha DNA polymerase type-B alpha subfamily 100.0
cd05536 371 POLBc_B3 DNA polymerase type-B B3 subfamily cataly 100.0
cd05530 372 POLBc_B1 DNA polymerase type-B B1 subfamily cataly 100.0
cd05537 371 POLBc_Pol_II DNA polymerase type-II subfamily cata 100.0
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 100.0
cd05531 352 POLBc_B2 DNA polymerase type-B B2 subfamily cataly 100.0
cd05538 347 POLBc_Pol_II_B DNA polymerase type-II B subfamily 100.0
KOG1798 2173 consensus DNA polymerase epsilon, catalytic subuni 100.0
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 99.97
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 99.97
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 99.96
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 99.96
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 99.96
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 99.95
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 99.95
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 99.95
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.95
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 99.92
KOG09691066 consensus DNA polymerase delta, catalytic subunit 99.92
PTZ001661054 DNA polymerase delta catalytic subunit; Provisiona 99.89
cd05535 621 POLBc_epsilon DNA polymerase type-B epsilon subfam 99.84
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 99.78
PHA02563 630 DNA polymerase; Provisional 99.62
PHA02523 391 43B DNA polymerase subunit B; Provisional 99.58
KOG09681488 consensus DNA polymerase zeta, catalytic subunit [ 99.29
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 99.26
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 98.96
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 98.92
PRK05762786 DNA polymerase II; Reviewed 98.84
PRK05761787 DNA polymerase I; Reviewed 98.32
COG3359278 Predicted exonuclease [DNA replication, recombinat 98.17
COG0417792 PolB DNA polymerase elongation subunit (family B) 97.7
PHA02735 716 putative DNA polymerase type B; Provisional 97.61
PRK06310250 DNA polymerase III subunit epsilon; Validated 97.46
PRK08517257 DNA polymerase III subunit epsilon; Provisional 97.37
PRK06309232 DNA polymerase III subunit epsilon; Validated 97.36
TIGR03491457 RecB family nuclease, putative, TM0106 family. Mem 97.3
PRK06063313 DNA polymerase III subunit epsilon; Provisional 97.27
PRK07883557 hypothetical protein; Validated 97.16
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 97.03
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 97.03
PRK07942232 DNA polymerase III subunit epsilon; Provisional 96.94
PRK06195309 DNA polymerase III subunit epsilon; Validated 96.83
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 96.81
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 96.75
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 96.7
PRK07740244 hypothetical protein; Provisional 96.69
PRK05601377 DNA polymerase III subunit epsilon; Validated 96.69
PRK06807313 DNA polymerase III subunit epsilon; Validated 96.67
PRK05711240 DNA polymerase III subunit epsilon; Provisional 96.66
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 96.63
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 96.58
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 96.4
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 96.28
PRK09146239 DNA polymerase III subunit epsilon; Validated 96.27
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 96.23
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 95.96
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 95.58
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 95.52
PRK11779476 sbcB exonuclease I; Provisional 95.5
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 95.35
PRK07247195 DNA polymerase III subunit epsilon; Validated 95.27
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 95.08
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 94.58
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 94.2
PRK09145202 DNA polymerase III subunit epsilon; Validated 93.97
PRK07748207 sporulation inhibitor KapD; Provisional 93.81
PRK06722281 exonuclease; Provisional 93.79
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 93.16
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 92.97
PF03175459 DNA_pol_B_2: DNA polymerase type B, organellar and 92.92
PRK05168211 ribonuclease T; Provisional 92.34
PF08490396 DUF1744: Domain of unknown function (DUF1744); Int 91.96
PRK05359181 oligoribonuclease; Provisional 91.79
PRK00448 1437 polC DNA polymerase III PolC; Validated 91.46
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 91.17
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 89.84
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 89.73
KOG1798 2173 consensus DNA polymerase epsilon, catalytic subuni 85.56
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 82.38
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 82.37
PRK09182294 DNA polymerase III subunit epsilon; Validated 82.29
PTZ00315582 2'-phosphotransferase; Provisional 81.44
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 81.08
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-138  Score=1252.57  Aligned_cols=938  Identities=35%  Similarity=0.475  Sum_probs=723.3

Q ss_pred             CccccHhHHhhHHHHhhhhhhccCC-CchhhhhhccccCCCCchhHHHHHHhhhchh---HHhhHHHHHHHHhhcccccc
Q 000502          459 PQATDTEALGLLKWLATSQAAEDLN-SDDELLHETILSPLLPETTIDKVLEKANTDY---ERESQKECQDILDSIEDEVN  534 (1459)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  534 (1459)
                      +...|+++.|..+|+++++++++++ .+|+.+.+|+|.|..+.+.|.+.||.|..++   ..|||++|+++|+|++-+..
T Consensus        52 ~~v~~a~~~g~~~~~~s~g~l~~i~~k~d~~~t~t~l~~~d~~aqi~k~le~a~~~~~~a~~esq~~~~~~v~sv~~vk~  131 (1488)
T KOG0968|consen   52 IRVFGANEEGETVCCFSHGVLPYIYVKYDSFATTTDLEVPDFLAQIQKSLEYALALAARANPESQKPNLNAVQSVQLVKG  131 (1488)
T ss_pred             ceecccccccceeeeeecccchhhhhhhhhhccccccccccHHHHHHHHHHHHHHHHhhcChhhhcchHHHHHHHHhcCC
Confidence            3568999999999999999999999 9999999999999999999999999999999   99999999999999776544


Q ss_pred             cccccccCCCCCCCCCCCCCCCCC----------CccccCCCCCCcccCCCCCCCCCCchhhhhhhhhcccccccccCcc
Q 000502          535 VDGLEERNSSTVDPSNHPETSSHK----------KIPQIDGSSDDLYLLPCSGSSGNSSKKEIKSESIRSFQHQVPQDTW  604 (1459)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (1459)
                      +.-.-...+-+...++..-++|.+          +||.-..|.         +.|.++...+.+.+.+  .-...+.+. 
T Consensus       132 ~p~~~~~~~~s~~~k~~l~~~sck~rl~el~rdg~ipnk~is~---------~esh~~y~~~r~~d~n--~~~~~~ikv-  199 (1488)
T KOG0968|consen  132 IPFYGYSFCFSKFLKICLFSPSCKDRLVELFRDGAIPNKVISV---------YESHLPYLLQRMVDHN--LYGCAPIKV-  199 (1488)
T ss_pred             CCccccccchhhHHHHHhcCchhHHHHHHHHhcccCCCccccc---------chhccchhhhhhhhcc--cccceeeec-
Confidence            332222223333344444445443          466555555         4444554444444433  112233333 


Q ss_pred             ccccccccc-cccccccccceecccccCCcccccccccccceeeccccCccCcccccccCCccccccccccc--cc--cc
Q 000502          605 TNAASKCNV-KKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDAD--AH--DI  679 (1459)
Q Consensus       605 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~  679 (1459)
                       .+...+|. .|.+||.+||++++. ..+.+.  ++.+.    ......+++++........++.+.+...+  .+  ++
T Consensus       200 -ds~~~~n~~dnsv~d~~p~t~sdn-~~l~ds--~~~s~----kl~~t~lsd~~~~~~~~~~I~~l~e~~kd~~kcrn~t  271 (1488)
T KOG0968|consen  200 -DSSIIKNDVDNSVFDNVPVTVSDN-LALLDS--CWLSE----KLIHTDLSDTPASSPNSLLITSLAEIWKDEAKCRNLT  271 (1488)
T ss_pred             -chhhhcCCcccccccCcceeeCcc-HHHHhh--cCchh----ccCcchhhhccccCCCcceeeehHHhhhhHHHhhccc
Confidence             33455555 999999999999987 233333  33333    45556677777777777778887777665  22  11


Q ss_pred             hhcccccCccHHHHHHhhh--ccccCCCCCCccccccc--ccccchhhhhhhhhhhcccccccccccccCCCCCCCc---
Q 000502          680 KEATAVTGGSVRDLMRRKR--SYRESSECEPPRVKRVN--VTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGI---  752 (1459)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  752 (1459)
                      --.....+|+++|+|++++  +.|++...+++..+++.  ++++.++ ..+|+...++   +...-|++.+-+|.++   
T Consensus       272 ~s~e~~~~s~l~d~~~k~~~~~~~esi~sq~~kse~~~~~~~~~~~E-t~~~~s~~q~---~~~~~E~~~f~~~~~~~~s  347 (1488)
T KOG0968|consen  272 SSDETNSFSKLHDSQFKLKEESSHESISSQHMKSEKLLLNEIKEKHE-TNRRVSRFQG---VLPSNEFCLFYSGARTNES  347 (1488)
T ss_pred             cchhhhccCchhhhcccchhhcccCCchHHHHHHHHHHHhhhccCCC-cccccccccc---cccchHHHHHHhcCCCCcc
Confidence            1112567899999999988  44488889999988876  7777765 6666666666   3344455555555444   


Q ss_pred             ---ccccccccCCC------------------------------CCCCCCCCc-------------------ceee----
Q 000502          753 ---STVCKENMESP------------------------------SPFDTKKED-------------------ASVS----  776 (1459)
Q Consensus       753 ---~~~~~~~~~~~------------------------------~~~~~~~~~-------------------~~~~----  776 (1459)
                         |..|++.|+..                              +++.+..+.                   +.+.    
T Consensus       348 ~~~s~~~e~~Vs~~S~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~  427 (1488)
T KOG0968|consen  348 DIDSQNREEHVSQISMSQKGNWSNPPLTAIQMKKETLPNIESILVSSATQLESSNSGTLFLSREEVEICDDLGIVLKSVF  427 (1488)
T ss_pred             cccCcchhhccccccccccccccCCCccccchhhhhhhhhhhccccccccccccCCCccccccccccccchhcccccccc
Confidence               44455555511                              122211110                   0000    


Q ss_pred             ------------------cC--CCccccccccccc--ccCC--CcccccCCCCC-----------------CCCCCCcCC
Q 000502          777 ------------------VG--DWKADNCKESKFD--ATSV--EPRELQSDHPN-----------------NNDSNLNQG  815 (1459)
Q Consensus       777 ------------------~~--~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~-----------------~~~~~~~~~  815 (1459)
                                        ..  .|+..++...+++  .+.+  |+..-|+.+--                 +....+.++
T Consensus       428 nS~a~~~~~~s~~~~l~s~~k~~~~~~~~~s~~~~l~~~~~~~~a~~~~~~~~v~a~~ts~~~~~~~~~~~e~~k~~~q~  507 (1488)
T KOG0968|consen  428 NSYAERTSTISPLSPLRSAKKMAPKFRQERSPSLQLDDGMVTRIAESQQTRSSVGASKTSIIEQPGEDPMEEDLKYREQA  507 (1488)
T ss_pred             cccccccccccccccccchhhhcchhhcCCCCCccccCCcceehhhhhcCccccCCCCCccCCCCCcchhHHHhHHhhcC
Confidence                              00  2445555555554  2222  55555555411                 111134445


Q ss_pred             ccccCCceeccCCceEEeecCCCCCChhHHHHHhhhcCCCcc-----ccccccceeecC-----------CCcccc-cee
Q 000502          816 SLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHDDKGA-----SGDMDKASVEHS-----------SLKGSD-IRP  878 (1459)
Q Consensus       816 ~~~~~p~~y~~d~s~~~~lt~~~sp~s~~~v~~wL~~~~~~~-----~~~~~~r~~~d~-----------~~s~~~-~~~  878 (1459)
                      .-.|.|.+--.|+++.++.+  +.|+.+.. -+|-.+++...     +..+..+-..|-           +..+.| ...
T Consensus       508 ~~~~~~~~~~~d~s~~~~~~--~~p~~d~k-lQ~psD~~~~~~~~~~s~~P~~~~~~~~~~S~~e~~s~~nv~~tgE~l~  584 (1488)
T KOG0968|consen  508 PEEGIPERQLEDDSNEALSD--GHPKNDYK-LQPPSDDEDSNTMSLKSQKPVERAEADDVDSEVEDDSELNVKGTGEVLE  584 (1488)
T ss_pred             cccccccccccccchhhHhh--cCCccccc-cCCCCCccccchhhhhccCchhhhhhccCCccccchhhcCccccceeeE
Confidence            57889999889999888877  33444333 56666554432     011111111111           001111 000


Q ss_pred             cchh-hhhcccccCCCCCCCCCCcccccccccccccCCCcccccccccccccCCCCCC-CCCCCccCCcCCCCCCCCCCC
Q 000502          879 VLEE-MHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRS-KPTPLSQIGFQDPASAGAGEQ  956 (1459)
Q Consensus       879 ~~~~-~~~~~~~~s~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sqi~g~~~~~-~~~p~~~~~~~~~~~~~~~~~  956 (1459)
                      +... --+...+.+.++.++|.+-.       +.+..++..+....++|||+||+..+ ..++.+..|+++++..+.++.
T Consensus       585 ~~s~pd~~~s~k~~~t~s~~d~~~~-------~~~~~~~~~~~~~~e~s~i~~p~~~s~~~~~~~v~~~q~~~~~~~~~~  657 (1488)
T KOG0968|consen  585 IHSDPDDQSSEKWALTPSAYDQNFK-------SMNEQLFDAAKIENELSQIRGPTAKSVYTFETSVAGAQKSKPVEQTQL  657 (1488)
T ss_pred             eecCcccchhhhhccChHHHHhhHH-------HHhhhhhcccchhhhhhhccCCccccccccchhhhcccccccccccce
Confidence            0000 11123344555544444333       34444444456788999999999884 467888889999888899999


Q ss_pred             ceEEEEEEEeCcCCCCCCCCCCCcEEEEEEEeecCC-----CceEEEEEEEecCCCcc---c-cccCCCCCcEEEEeCCH
Q 000502          957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDS-----DHAVEIYVLLYCKSESH---Q-RSLVGIPDCKVFVCSKE 1027 (1459)
Q Consensus       957 LtiLSIEIet~srg~lfPDPe~DpI~~Is~~v~~d~-----d~~~ei~vLv~~~~~~~---~-~~~~~i~g~~V~~f~SE 1027 (1459)
                      |+++++|+|+.+||++.|||.+|+|.+|+||++.+.     +.+..++++++....++   . ..+.++.|++|.++.+|
T Consensus       658 Lt~lsiElha~sr~dl~PDP~~D~V~~l~~~vq~dtp~pd~~si~~~gv~Vv~~~~~ds~~~t~~~~~~~~~~V~~~~sE  737 (1488)
T KOG0968|consen  658 LTILSIELHATSRGDLEPDPVFDSVASLFLCVQEDTPMPDADSIVSVGVIVVDKVCPDSHVQTTTLGGIYGCRVVVMESE  737 (1488)
T ss_pred             eeeeeeeccccccCCCCCCcccccchhhhhhhccCCCCCcccceeeeeEEEEeccCccccccccccCCcCCceEEEehhH
Confidence            999999999999999999999999999999999883     33444555555433121   2 23478889999999999


Q ss_pred             HHHHHHHHHHHhhcCCCEEEeccCCCccHHHHHHHHHHhCCCCccCCCCCCccccccCCCccccccccccccccchhhHH
Q 000502         1028 IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAE 1107 (1459)
Q Consensus      1028 kELL~aFidlIr~~DPDIItGYNI~~FDLpYLieRAk~LGi~l~~~LSR~~~~~~~~~~~~~f~~k~~~~~~l~~p~~~g 1107 (1459)
                      ++|+++++++|..+||||++||++++++||||++|++.||+++...++|++.....+.                      
T Consensus       738 ~elf~ev~~~i~q~DPDIl~GyEi~~~SWGyl~eR~~~l~~di~~~lsRv~~~~~~n~----------------------  795 (1488)
T KOG0968|consen  738 LELFEEVAKLIVQYDPDILLGYEIHNLSWGYLIERAKLLGIDISRDLSRVKCYEKTNE----------------------  795 (1488)
T ss_pred             HHHHHHHHHHHHhcCcceeeeeeecccchHHHHHHHHHhcchHHHHHhcCCChhhhhh----------------------
Confidence            9999999999999999999999999999999999999999999999999986543210                      


Q ss_pred             hhhhhhhhhccccccccccceeecCeEEeehHHHHhhccCCCCCCHHHHHHHHhcCCCCCCChhhhHHHHhcCChhHHHH
Q 000502         1108 SLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYR 1187 (1459)
Q Consensus      1108 ~~~~k~s~~~~~~G~~~~s~i~I~GRivIDLwrv~rkelKL~sYSLEnVA~~vLgekkpd~s~k~Ltk~y~sg~~~~r~r 1187 (1459)
                            +.....||++|.+++.|.|||+|++||++|.+++|.+|+||+|++++|+++.|.++++.|++||.++....|++
T Consensus       796 ------~d~~~ewg~tt~S~i~i~GR~~lNiWRilR~eV~L~nYtlEsv~~nVL~kk~P~~~~~~Lt~~~~s~~~~~r~~  869 (1488)
T KOG0968|consen  796 ------SDDEREWGYTTISGINIVGRHVLNIWRILRSEVALTNYTLESVVFNVLRKKIPMFDFAVLTRWWKSKRSAERND  869 (1488)
T ss_pred             ------hhhhhhccceeeccccccchhhhhHHHHHhhhhhhhhccHHHHHHHHHHhhcCCCcHHHHHHHHhcccHHHHHH
Confidence                  11234799999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHhCccccccccCCchhhhHHHHHHHhhhCCEEeeCCCCCccccccccccC
Q 000502         1188 CVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECL 1267 (1459)
Q Consensus      1188 vl~YclkDa~Lvl~Ll~kL~iI~~t~ElARl~GIpf~sVlsRGSq~rVESlLlr~ak~~nfllpsPs~~qv~~q~a~E~G 1267 (1459)
                      ++.|+++++.++++|+.++++|.++.||||++||+|.+|++||||+||||||+|.||++|||+|+|+.+||..|+|+||.
T Consensus       870 ~l~y~l~Ra~~NlelLsq~d~i~k~~E~ARv~GIdF~sV~tRGSQ~rVESmllRiAk~~Nyi~~SPs~kQv~~q~A~Ecv  949 (1488)
T KOG0968|consen  870 VLNYLLSRARLNLELLSQLDWILKNSEMARVIGIDFHSVLTRGSQFRVESMLLRIAKPMNYIAPSPSHKQVAMQGAPECV  949 (1488)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhHHHHHhhcceeeEEeeccchhhHHHHHHHHhcccccccCCccHHHHhhcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCCcccCCeEEeeccccchhHHhhcCccccccccccCCCccc---cCCCcccCCCchhhcccCcccccCCCCce
Q 000502         1268 PLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKEN---TLGVSSFRPDLHVLRDLKDELLIPPNGVM 1344 (1459)
Q Consensus      1268 glVmEP~sGfY~nPVvVLDFqSLYPSIMIAyNICyST~vg~~~~~~~n---~~Gv~~~~~d~~~l~~Lkd~i~isPngv~ 1344 (1459)
                      |+||||++.||.|||+||||||||||||||||||||||+|++...+.+   ++|++.|+.+++.+.++++++.++|||++
T Consensus       950 PLVMEPeS~fY~~PViVLDFQSLYPSivIAYNyCySTcLG~v~~l~~~~e~~LG~s~~s~~~dil~~~~ndV~isPNgv~ 1029 (1488)
T KOG0968|consen  950 PLVMEPESAFYFDPVIVLDFQSLYPSIVIAYNYCYSTCLGKVGNLNQMNEIKLGVSKYSLPPDILVLAKNDVTISPNGVM 1029 (1488)
T ss_pred             ceeecchhhhccCceEEEEchhhcchHHHhHHHHHHHhhhHHHhhccccceeeeeeeccCCHHHHHHHhcceeeCCCceE
Confidence            999999999999999999999999999999999999999999876544   79999999999999988999999999999


Q ss_pred             ecCCCCcCCChHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhheeeeecccccccccCcCCCHHHHHHHHH
Q 000502         1345 YVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ 1424 (1459)
Q Consensus      1345 FVk~~vrkGILP~mL~eLL~~R~~vKk~MKk~~~~d~~l~~iLDarQlALKIiANS~YGYtGA~fSGRmpc~eIAdSIT~ 1424 (1459)
                      |||+++|+|+||+||++||++|.|||++||+++ ++..++++||+||||||++||++||||+|+|||||||.|+||+|++
T Consensus      1030 yVK~sVRkgvLpkmLeEIL~tRiMVKkaMK~~~-~~~~L~RiLnaRQLALKLiANVTYGYTsA~FSGRMPCaElADsIV~ 1108 (1488)
T KOG0968|consen 1030 YVKPSVRKGVLPKMLEEILATRIMVKKAMKRTK-DNKKLKRILNARQLALKLIANVTYGYTSANFSGRMPCAELADSIVQ 1108 (1488)
T ss_pred             EechhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHhhhHHHHHHHHhhccccccccccCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999998 5678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCcEEEEeccceeEEEC
Q 000502         1425 CGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459 (1459)
Q Consensus      1425 ~GRe~Le~Ai~~Ie~~~~~GakVIYGDTDSlFV~l 1459 (1459)
                      +|||+|++||++|+....|||+||||||||+||+|
T Consensus      1109 ~GRETLEraIe~Vn~~d~w~AkVVYGDTDSmFVlL 1143 (1488)
T KOG0968|consen 1109 KGRETLERAIEMVNRGDYWGAKVVYGDTDSMFVLL 1143 (1488)
T ss_pred             hhHHHHHHHHHHHhcCCcCCeEEEEcCCCceEEEe
Confidence            99999999999999999999999999999999986

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>PHA03036 DNA polymerase; Provisional Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA03334 putative DNA polymerase catalytic subunit; Provisional Back     alignment and domain information
>KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PHA02524 43A DNA polymerase subunit A; Provisional Back     alignment and domain information
>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain Back     alignment and domain information
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain Back     alignment and domain information
>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd00145 POLBc DNA polymerase type-B family catalytic domain Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain Back     alignment and domain information
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain Back     alignment and domain information
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain Back     alignment and domain information
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain Back     alignment and domain information
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain Back     alignment and domain information
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PHA02563 DNA polymerase; Provisional Back     alignment and domain information
>PHA02523 43B DNA polymerase subunit B; Provisional Back     alignment and domain information
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02735 putative DNA polymerase type B; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR03491 RecB family nuclease, putative, TM0106 family Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1459
3iay_A 919 Ternary Complex Of Dna Polymerase Delta Length = 91 3e-47
2vwk_A 773 Uracil Recognition In Archaeal Dna Polymerases Capt 1e-26
2xhb_A 773 Crystal Structure Of Dna Polymerase From Thermococc 1e-26
2vwj_A 773 Uracil Recognition In Archaeal Dna Polymerases Capt 1e-26
1tgo_A 773 Thermostable B Type Dna Polymerase From Thermococcu 1e-26
1qht_A 775 Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon 1e-25
2jgu_A 775 Crystal Structure Of Dna-directed Dna Polymerase Le 1e-23
4ahc_A 775 Crystal Structure Of An Evolved Replicating Dna Pol 3e-23
3a2f_A 775 Crystal Structure Of Pyrococcus Furiosus Dna Polyme 7e-23
1wn7_A 774 Crystal Structure Of Archaeal Family B Dna Polymera 4e-21
1wns_A 774 Crystal Structure Of Family B Dna Polymerase From H 4e-21
1d5a_A 733 Crystal Structure Of An Archaebacterial Dna Polymer 1e-20
1qqc_A 773 Crystal Structure Of An Archaebacterial Dna Polymer 6e-20
2gv9_A 1193 Crystal Structure Of The Herpes Simplex Virus Type 4e-18
4flt_A 793 Pyrococcus Abyssi B Family Dna Polymerase Bound To 6e-18
4fm2_A 793 Pyrococcus Abyssi B Family Dna Polymerase (Triple M 1e-17
4fvm_A 910 Crystal Structure Of Yeast Dna Polymerase Alpha Len 1e-13
4b08_A 910 Crystal Structure Of Yeast Dna Polymerase Alpha, Se 2e-13
4fyd_A 910 Crystal Structure Of Yeast Dna Polymerase Alpha Bou 4e-13
1s5j_A 847 Insight In Dna Replication: The Crystal Structure O 4e-04
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 238/512 (46%), Gaps = 69/512 (13%)
Query: 957  LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
            L ++S +++   R  + P+P YD +    NVV++A          ++ L  C        
Sbjct: 249  LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKP-FIRNVFTLNTCSP------ 301
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLN 1072
               I    +F  + E  + S++   +   DPD+++G++     + +L  RA  L +   N
Sbjct: 302  ---ITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKV---N 355
Query: 1073 DISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGG 1132
            D    P   ++     EI E               S+ +  A     +G      +++ G
Sbjct: 356  DF---PYFGRLKTVKQEIKE---------------SVFSSKA-----YGTRETKNVNIDG 392
Query: 1133 RIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYV 1192
            R+ L++ + ++ E KL  YT+ AV+   L  +   + + +++    +G    R R   Y 
Sbjct: 393  RLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISD-LQNGDSETRRRLAVYC 451
Query: 1193 VGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS 1252
            +  A L L +M +L  +   +E+ARV G+ F  +L+RG Q +V S L R     +   + 
Sbjct: 452  LKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEID--TVI 509
Query: 1253 PGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPS 1312
            P     AS    E    V+EP  G+Y  P+  LDF SLYPS+M+A+NLC+ T   K    
Sbjct: 510  PNMQSQASDDQYEG-ATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVE 568
Query: 1313 KENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQA 1372
            + N                + ++ +I PNG  +V  K R+G+LP +L+E++S R   K+A
Sbjct: 569  RLNL--------------KIDEDYVITPNGDYFVTTKRRRGILPIILDELISAR---KRA 611
Query: 1373 IKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLE 1431
             K L   +    R + N RQLALK+ AN  YG+T A   G++PC  ++ S+   GR+ + 
Sbjct: 612  KKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMIL 670
Query: 1432 KAISFVNEN------EKWKAKVIYGDTDRYTV 1457
            K  + V E        K  A V+YGDTD   V
Sbjct: 671  KTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMV 702
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 Back     alignment and structure
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 Back     alignment and structure
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 Back     alignment and structure
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 Back     alignment and structure
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 Back     alignment and structure
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 Back     alignment and structure
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 Back     alignment and structure
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 Back     alignment and structure
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 Back     alignment and structure
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 Back     alignment and structure
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 Back     alignment and structure
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 Back     alignment and structure
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna Polymerase Length = 1193 Back     alignment and structure
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 Back     alignment and structure
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 Back     alignment and structure
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Length = 910 Back     alignment and structure
>pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha, Selenomethionine Protein Length = 910 Back     alignment and structure
>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To Dna/rna And Dgtp Length = 910 Back     alignment and structure
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna Polymerase B1 From The Archaeon Sulfolobus Solfataricus Length = 847 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1459
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 1e-130
3iay_A919 DNA polymerase delta catalytic subunit; protein-DN 8e-16
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 1e-120
1qht_A775 Protein (DNA polymerase); archaea, hyperthermostab 8e-13
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 1e-107
2gv9_A1193 DNA polymerase; polymerase alpha fold, transferase 3e-19
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 1e-89
3k59_A786 POL II, DNA polymerase II; protein-DNA complex, DN 9e-06
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 1e-64
1s5j_A847 DNA polymerase I; replication, disulfide bonds, tr 2e-08
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 7e-05
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 2e-04
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 Back     alignment and structure
 Score =  427 bits (1099), Expect = e-130
 Identities = 130/506 (25%), Positives = 220/506 (43%), Gaps = 65/506 (12%)

Query: 957  LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
            L ++S +++   R  + P+P YD +  +A            I  +    + S       I
Sbjct: 249  LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS------PI 302

Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS- 1075
                +F  + E  + S++   +   DPD+++G++     + +L  RA  L +        
Sbjct: 303  TGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGR 362

Query: 1076 --RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGR 1133
                  E K +   S                               +G      +++ GR
Sbjct: 363  LKTVKQEIKESVFSS-----------------------------KAYGTRETKNVNIDGR 393

Query: 1134 IVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVV 1193
            + L++ + ++ E KL  YT+ AV+   L  +   + + +++          R R   Y +
Sbjct: 394  LQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDS-ETRRRLAVYCL 452

Query: 1194 GRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1253
              A L L +M +L  +   +E+ARV G+ F  +L+RG Q +V S L R     +   + P
Sbjct: 453  KDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDT--VIP 510

Query: 1254 GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSK 1313
                 AS    E    V+EP  G+Y  P+  LDF SLYPS+M+A+NLC+ T   K    +
Sbjct: 511  NMQSQASDDQYEG-ATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVER 569

Query: 1314 ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAI 1373
             N                + ++ +I PNG  +V  K R+G+LP +L+E++S R   K+ +
Sbjct: 570  LNL--------------KIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDL 615

Query: 1374 KKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKA 1433
            +           + N RQLALK+ AN  YG+T A   G++PC  ++ S+   GR+ + K 
Sbjct: 616  RD--EKDPFKRDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKT 672

Query: 1434 ISFVNEN------EKWKAKVIYGDTD 1453
             + V E        K  A V+YGDTD
Sbjct: 673  KTAVQEKYCIKNGYKHDAVVVYGDTD 698
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Length = 388 Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Length = 575 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1459
d1tgoa2 426 e.8.1.1 (A:348-773) Family B DNA polymerase {Archa 2e-34
d1s5ja2 415 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo 1e-25
d1ih7a2 528 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte 6e-25
d1q8ia1388 c.55.3.5 (A:2-389) Exonuclease domain of family B 9e-25
d1q8ia1388 c.55.3.5 (A:2-389) Exonuclease domain of family B 5e-04
d1q8ia2 394 e.8.1.1 (A:390-783) Family B DNA polymerase {Esche 4e-23
d1tgoa1347 c.55.3.5 (A:1-347) Exonuclease domain of family B 3e-21
d1tgoa1347 c.55.3.5 (A:1-347) Exonuclease domain of family B 2e-08
d2py5a2 388 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio 2e-14
d1noya_372 c.55.3.5 (A:) Exonuclease domain of family B DNA p 4e-11
d1ih7a1375 c.55.3.5 (A:1-375) Exonuclease domain of family B 7e-09
d1s5ja1410 c.55.3.5 (A:40-449) Exonuclease domain of family B 9e-05
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

 Score =  135 bits (341), Expect = 2e-34
 Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 33/233 (14%)

Query: 1228 SRGSQYRVESMLLRLAHTQNYLAIS-PGNHQVASQPAMECLPLVMEPESGFYADPVVVLD 1286
            S G+   VE  LLR A+ +N LA + P   ++A +        V EPE G + + +V LD
Sbjct: 1    STGN--LVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLW-ENIVYLD 57

Query: 1287 FQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYV 1346
            F+SLYPS++I +N+   T                            ++  + P  G  + 
Sbjct: 58   FRSLYPSIIITHNVSPDTL----------------------NREGCEEYDVAPQVGHKFC 95

Query: 1347 PPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTA 1406
              K   G +P LL ++L  R  VK+  K  A    I  ++ + RQ A+K++AN  YGY  
Sbjct: 96   --KDFPGFIPSLLGDLLEERQKVKK--KMKATIDPIEKKLLDYRQRAIKILANSFYGYYG 151

Query: 1407 AGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
                 R  C E A+S+   GR  +E  I  +   EK+  KV+Y DTD +   I
Sbjct: 152  Y-AKARWYCKECAESVTAWGRQYIETTIREI--EEKFGFKVLYADTDGFFATI 201
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 Back     information, alignment and structure
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 Back     information, alignment and structure
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 Back     information, alignment and structure
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Length = 372 Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Length = 375 Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1459
d1tgoa2 426 Family B DNA polymerase {Archaeon Thermococcus gor 100.0
d1s5ja2 415 Family B DNA polymerase {Sulfolobus solfataricus [ 100.0
d1ih7a2 528 Family B DNA polymerase {Bacteriophage RB69 [TaxId 100.0
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 100.0
d1q8ia2 394 Family B DNA polymerase {Escherichia coli [TaxId: 100.0
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 100.0
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 100.0
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 100.0
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 100.0
d2py5a2 388 phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 99.88
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 99.63
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 99.48
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 99.27
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 99.24
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 97.81
d2qxfa1467 Exonuclease I {Escherichia coli K12 (Escherichia c 97.29
d2guia1174 N-terminal exonuclease domain of the epsilon subun 97.16
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 97.0
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 92.94
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 91.07
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=100.00  E-value=0  Score=394.52  Aligned_cols=198  Identities=33%  Similarity=0.472  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHHHCCEEEEC-CCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             235689988873217978638-9998555665324698455056774458847952144006688632754023346667
Q 000502         1232 QYRVESMLLRLAHTQNYLAIS-PGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKIL 1310 (1459)
Q Consensus      1232 q~rVESlLLR~ak~enfIlPs-Psk~qv~~q~a~E~GglVlEP~sGlY~nPVvVLDFqSLYPSIIIAyNICpSTivg~~~ 1310 (1459)
                      +..||++++|+|+++|+++|+ |+..+...+.+...||+|++|++|+|+ ||++|||+|||||||++|||||+|++....
T Consensus         3 g~~ve~~~~~~~~~~~~~~p~~~~~~~~~~~~~~y~Gg~V~~p~~G~~~-~v~~lDf~SLYPsii~~~Ni~p~T~~~~~~   81 (426)
T d1tgoa2           3 GNLVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWE-NIVYLDFRSLYPSIIITHNVSPDTLNREGC   81 (426)
T ss_dssp             HHHHHHHHHHHHHHTTBCCCCCCCHHHHHHCCCCCCCCCEECCCCSEEE-EEEEEEESSHHHHHHHHTTCSTTTBTCTTC
T ss_pred             HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CEEEEECCCHHHHHHHHHCCCHHHCCCCCC
T ss_conf             3899999999998789993369864100255568688367568997678-857888435029999996889655688785


Q ss_pred             CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             87655589755688920001567652138998100389876777499999999999999999984098168999999999
Q 000502         1311 PSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNAR 1390 (1459)
Q Consensus      1311 ~~~~n~~Gv~~~~~d~~~l~~Lkd~i~isPnG~~Fvk~~vrkGILP~lL~eLL~~R~~vKk~MKk~~~~d~~l~~iLD~r 1390 (1459)
                                            .+.....++|..|++  .++||+|++|++|++.|+++|+.||+..  ++.++++||.+
T Consensus        82 ----------------------~~~~~~~~~g~~~~~--~~~Gilp~~l~~l~~~R~~~K~~~k~~~--~~~~~~~~d~~  135 (426)
T d1tgoa2          82 ----------------------EEYDVAPQVGHKFCK--DFPGFIPSLLGDLLEERQKVKKKMKATI--DPIEKKLLDYR  135 (426)
T ss_dssp             ----------------------SSEEECTTTCCEEEC--SSCCHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred             ----------------------CCCCCCCCCCCEEEC--CCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_conf             ----------------------313447888835763--6887169999999999998655202101--05888889889


Q ss_pred             HHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEC
Q ss_conf             977101033302433566667678977797999998999999999986238898199996264347999
Q 000502         1391 QLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459 (1459)
Q Consensus      1391 QlALKIlANS~YGytGa~fSGRmpc~eIAdSIT~~GRe~Le~ai~~Ie~~~~~GakVIYGDTDSiFV~l 1459 (1459)
                      |+|+|+++||+|||+|+.+ +||||.++|++||++||++|++++++|++.  +|++||||||||+||.+
T Consensus       136 Q~a~Ki~~NS~YG~~G~~~-~~~~~~~~A~~iT~~GR~~i~~~~~~i~~~--~g~~ViYgDTDSi~v~~  201 (426)
T d1tgoa2         136 QRAIKILANSFYGYYGYAK-ARWYCKECAESVTAWGRQYIETTIREIEEK--FGFKVLYADTDGFFATI  201 (426)
T ss_dssp             HHHHHHHHTTHHHHHHCTT-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEESSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCEEEEECCCCEEEEC
T ss_conf             9999986647888875241-000001122434799999999999999997--19823662056168853
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure