Citrus Sinensis ID: 000505
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.934 | 0.900 | 0.501 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.908 | 0.874 | 0.472 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.918 | 0.913 | 0.485 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.903 | 0.882 | 0.477 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.855 | 0.828 | 0.506 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.717 | 0.993 | 0.518 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.904 | 0.857 | 0.403 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.838 | 0.841 | 0.421 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.919 | 0.883 | 0.394 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.948 | 0.944 | 0.399 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1315 bits (3403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/1429 (50%), Positives = 972/1429 (68%), Gaps = 66/1429 (4%)
Query: 71 GFYEY---W--NFRIVSFKSVSL-VVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVV 124
GFY Y W N ++VS L +V+W V+++C R EHK+ P +L LW V
Sbjct: 102 GFYWYESGWLDNEQLVSSLGFLLGMVSWG---VLSICLHRCRDC-EHKKAPFLLRLWLVF 157
Query: 125 HLVIVLVCVSVYLLTHLSSIGLP-HILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD 183
+LV+ + V + + +P H+L D V+ V L + A +
Sbjct: 158 YLVVSCYSLVVDFVMYERRETVPVHLL----VFDIVAFIAAVFLGYVAVLKKDRSNSNGV 213
Query: 184 LDIPLLREED-----DEFLCKN-------ISTFASAGVLSKITFHWLNQLFQRGRIQKLE 231
L+ PLL D D+ + N + ++ AG+LS +TF W++ L G + L+
Sbjct: 214 LEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLD 273
Query: 232 LLHIPPIPQSET----ANDASSLLEESLRKQKTDATS---LPQVIIHAVWKSLALNAAFA 284
L +P + +++ A S+LE +++ T+ + + A W+ L + A FA
Sbjct: 274 LEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWEIL-VTAFFA 332
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
+ T+ASY+GP LI FV +L+G+ ++ H G VL F AK VE L+QR W+F +
Sbjct: 333 FIYTVASYVGPALIDTFVQYLNGRRQYN--HEGYVLVITFFAAKIVECLSQRHWFFRLQK 390
Query: 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+GIR+RSAL +IY++ + + G +SG IIN + VD ERIG+F Y+H W++ +Q
Sbjct: 391 VGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQ 450
Query: 402 VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETL 461
V LAL ILY+NLG A + AAL +TI VM+ N P QERF +MEAKD+R+K+TSE L
Sbjct: 451 VGLALWILYRNLGLA-SIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEIL 509
Query: 462 KSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI 521
++MR+LKL WE +FL K+ LR+ E LKKY+Y + I+F+FW +PTLVSV TFG CI
Sbjct: 510 RNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACI 569
Query: 522 LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581
LL PL SG +LSALATFRILQEPIYNLP+ ISMI QTKVSL R+ ++ DN + I E
Sbjct: 570 LLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVE 629
Query: 582 PTSK-ASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL 640
K +SDVA+++ +WD N PT+K + K+ G KVAVCG+VGSGKSSLL
Sbjct: 630 RLPKGSSDVAVEVINSTLSWDVSSSN---PTLKDIN-FKVFPGMKVAVCGTVGSGKSSLL 685
Query: 641 SSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700
SS+LGE+P++SG+ +KV G KAYV QS WIQ+G I +NILFGK M + Y++VLE C+L+
Sbjct: 686 SSLLGEVPKVSGS-LKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLS 744
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+D+E+ + GD +V+GERGINLSGGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLF
Sbjct: 745 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 804
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
K+ L+GLL K+V+Y THQ+EFL AADL+LVMKDG+I Q+GKY D++ + ++ + + A
Sbjct: 805 KEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDIL-NSGTDFMELIGA 863
Query: 821 HRKSLDQV-----NPPQEDKCLSR---VPCQMSQITEERFARPISCGEFSGRS------Q 866
H+++L V N E L + + + E+ ++ + + Q
Sbjct: 864 HQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESVEPQRQIIQ 923
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKR 922
+E+ E G V VY +ITL Y GALVP ILL QVLFQ LQ+GSNYW+AWAT D +
Sbjct: 924 EEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQA 983
Query: 923 KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTP 982
V L+ V++ L+ GSS IL RA LL T KTA LF M +FR+P+SFFDSTP
Sbjct: 984 PVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTP 1043
Query: 983 SSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIW 1042
S RI++R STDQS VD ++PY+ +A +IQL+ II +MSQ +W VF +F+ ++ SIW
Sbjct: 1044 SGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIW 1103
Query: 1043 YQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102
YQ YYI AREL+R+VG KAP++ HFSE+I+GATTIR F+QE RF + L D YS
Sbjct: 1104 YQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRP 1163
Query: 1103 TFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWV 1162
F+ G MEWLC R+++L + F L+ LV++P IDPSLAGLA TYGL+LN LQAW+
Sbjct: 1164 KFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWL 1223
Query: 1163 IWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLP 1222
IW LCN+ENK+ISVERILQ+ ++PSE PLVI+++RP WPS G++E+ +L V+Y P +P
Sbjct: 1224 IWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMP 1283
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+VL+GITCTF G + G+VGRTGSGKSTLIQ LFR+VEPS G I IDGV+I IGL DLR
Sbjct: 1284 LVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLR 1343
Query: 1283 SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
RLSIIPQDP +F+GT+R+NLDPLE+++D +IWE ++KC L + VR+ ++ LD+ V+E+G
Sbjct: 1344 LRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENG 1403
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
+NWS+GQRQLVCL RVLLK+ +ILVLDEATAS+DTATDN+IQ+T+RE S CTVIT+AHR
Sbjct: 1404 DNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHR 1463
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1451
I +VID+D+VL+L G + EYD+P +LLED SSSFSKLVAE+ R+S S
Sbjct: 1464 ISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1259 bits (3259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/1385 (47%), Positives = 913/1385 (65%), Gaps = 61/1385 (4%)
Query: 112 KRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNA 171
++ P ++ +WW + I L C L+ G A + P L LCF A
Sbjct: 139 EKLPFLVRIWWFLAFSICL-CTMYVDGRRLAIEGWSRCSSHVVA-NLAVTPALGFLCFLA 196
Query: 172 TYACC---CARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQ 228
R SDL PLL EE E C ++ +++AG++S IT WL+ L G +
Sbjct: 197 WRGVSGIQVTRSSSDLQEPLLVEE--EAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKR 254
Query: 229 KLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLP----QVIIHAVWKSLALNAAFA 284
LEL IP + + A + +L+ + ++ K++ S P + I+ + WK A NA FA
Sbjct: 255 PLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFA 314
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
G+NT+ SY+GP+LI+ FV +L GK H G VLA +F +K +E++T RQWY G +
Sbjct: 315 GLNTLVSYVGPYLISYFVDYLGGKEIFP--HEGYVLAGIFFTSKLIETVTTRQWYMGVDI 372
Query: 345 IGIRVRSALTVLIYKRSM---AIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ VRSALT ++Y++ + +I +SG I+N + VDV+RIGD+ Y+H IW+LP+Q
Sbjct: 373 LGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQ 432
Query: 402 VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETL 461
+ LAL ILYK++G A A A L +TI ++ PLA QE + +M AKD R++ TSE L
Sbjct: 433 IVLALAILYKSVGIA-AVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECL 491
Query: 462 KSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI 521
++MRVLKL +WE + +L +RE E L+K LY+ + + F+FW+SP V+ +TF I
Sbjct: 492 RNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSI 551
Query: 522 LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581
L T LT+G VLSALATFRILQEP+ N P+L+SM+AQTKVSL RI F++E+ ++ T
Sbjct: 552 FLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATV 611
Query: 582 PTSKA-SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL 640
+ S++AI+I+ G + WD +PT+ +MK+ KG +VAVCG+VGSGKSS +
Sbjct: 612 VIPRGLSNIAIEIKDGVFCWDPFS---SRPTLSGI-QMKVEKGMRVAVCGTVGSGKSSFI 667
Query: 641 SSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700
S ILGEIP+ISG +++ G YV QS+WIQ+G I ENILFG M ++ Y+ V++ C+L
Sbjct: 668 SCILGEIPKISGE-VRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLK 726
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+DIE+++ GD +++GERGINLSGGQKQR+QLARA+Y ++D+Y+ DDPFSA+DAHTG+ LF
Sbjct: 727 KDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLF 786
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ ++ L++KTV++ THQ+EFL AADL+LV+K+G+I QSGKY+DL+ ++ + A
Sbjct: 787 RDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLL-QAGTDFKALVSA 845
Query: 821 HRKSLDQV------------NPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGR---- 864
H ++++ + NP ++ L + + E A+ + G +
Sbjct: 846 HHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAI 905
Query: 865 ---------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMG 909
Q+E+ G+V VY +++ YKGAL+P+I+L Q FQ LQ+
Sbjct: 906 KEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIA 965
Query: 910 SNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
SN+W+AWA ++ KV L+ V+ L+ GSS FI RA L+AT + AQ+LFLN
Sbjct: 966 SNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLN 1025
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
M+ SVFRAP+SFFDSTP+ RILNR S DQS VD DIP+RL G A IQL I+ +M+
Sbjct: 1026 MLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNV 1085
Query: 1026 AWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085
WQVF L + + W Q YY+ ++REL R+V +K+PI+H F ESIAGA TIR F QE
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQE 1145
Query: 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA 1145
RF+ R+ L+D + F + +EWLCLR+ LL F +++LV+ P IDPS+A
Sbjct: 1146 KRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMA 1205
Query: 1146 GLAATYGLNLN-VLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS 1204
GLA TYGLNLN L W++ + C +ENK+IS+ERI Q++ I EAP +I++ RP WP+
Sbjct: 1206 GLAVTYGLNLNGRLSRWIL-SFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPA 1264
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+G IEL ++ V+Y LP VL G++C FPG KKIG+VGRTGSGKSTLIQALFR++EP+ G
Sbjct: 1265 TGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAG 1324
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
+I ID +DIS IGL DLRSRL IIPQDP LF+GT+R NLDPLE+HSD +IWE ++K L
Sbjct: 1325 KITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLG 1384
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1384
++VR LD+PV E+G+NWSVGQRQLV L R LLK+ +ILVLDEATAS+DTATDN+IQ
Sbjct: 1385 DVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQ 1444
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444
+ IR E CTV T+AHRIPTVID+DLVLVL +G+V E+D+P +LLED SS F KLV E+
Sbjct: 1445 KIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEY 1504
Query: 1445 LRRTS 1449
R++
Sbjct: 1505 SSRST 1509
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1254 bits (3244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1392 (48%), Positives = 932/1392 (66%), Gaps = 53/1392 (3%)
Query: 90 VTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHI 149
+TW + V L RY + ++ +L +WWV V VS Y HL + +
Sbjct: 101 LTWG-SISVYLFGRYTNSC--EQKVLFLLRVWWVFFFV-----VSCY---HLVVDFVLYK 149
Query: 150 LPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD------LDIPLLREEDDEFLCKNIST 203
E +V FV + LV +C C C + L PLL + + +
Sbjct: 150 KQEMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAP 208
Query: 204 FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQK 259
F+ AG+LS+++F W++ L G + +++ +P + +S+T S LE +++
Sbjct: 209 FSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERR 268
Query: 260 TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV 319
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + G V
Sbjct: 269 ITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYK--NQGYV 326
Query: 320 LASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIIN 376
L + F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN
Sbjct: 327 LVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIIN 386
Query: 377 MINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLA 436
++ VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 387 LMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFA 445
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+E+F S +M++KD R+K TSE L +M++LKL WE +FL K+L LR IE LKK++Y
Sbjct: 446 KLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVY 505
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI
Sbjct: 506 NSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMI 565
Query: 557 AQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
QTKVSL RI F+ D+ Q+ + S +S++A++I G ++WD ++ PT++
Sbjct: 566 VQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDM 622
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ K+ +G VA+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G +
Sbjct: 623 N-FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKV 680
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
ENILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+
Sbjct: 681 EENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARAL 740
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDG
Sbjct: 741 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDG 800
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
KI Q+GKY +++ D ++ + + AH ++L + D C + + S +E
Sbjct: 801 KITQAGKYHEIL-DSGTDFMELVGAHTEALATI-----DSCETGYASEKSTTDKENEVLH 854
Query: 856 ISCGEFSGRS--------QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ +G Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L
Sbjct: 855 HKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLS 914
Query: 908 MGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
+GSNYW+ W T D + VS LI V++ L+ SSF IL RA+L+A K A LF
Sbjct: 915 IGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELF 974
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
M +FRA +SFFD+TP RILNR STDQS D +P + A +A A I +L II ++
Sbjct: 975 TQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIV 1034
Query: 1024 QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
Q AWQV +F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE+++G TTIR F+
Sbjct: 1035 QVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFD 1094
Query: 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPS 1143
QE RF L D YS + FH+ G MEWLC R+ LL FAF L+ILV+ P I+PS
Sbjct: 1095 QEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPS 1154
Query: 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP 1203
LAGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PLVI+ +RP WP
Sbjct: 1155 LAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWP 1214
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
S G+I + NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTLIQ LFR+VEP+
Sbjct: 1215 SRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAA 1274
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G I IDG++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D +IWE ++ C L
Sbjct: 1275 GEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQL 1334
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+ VR+ + LD+PV+E+G+NWSVGQRQLVCL RVLLK+ ++LVLDEATASIDTATDN+I
Sbjct: 1335 GDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLI 1394
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
Q+T+R + CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLED SS FSKLVAE
Sbjct: 1395 QETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAE 1454
Query: 1444 FLRRT-SKSNRN 1454
+ + SKS R+
Sbjct: 1455 YTTSSESKSKRS 1466
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1247 bits (3226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/1371 (47%), Positives = 929/1371 (67%), Gaps = 53/1371 (3%)
Query: 107 TLGEHKRWPLVLVLWWVVHLVI----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLP 162
T +++P++L +WWV++ + +LV +++Y L S+ H+L D +++
Sbjct: 127 TYSHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSV---HLLLS----DVLAVS 179
Query: 163 LLVLLCFNA---------------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASA 207
+ + LC++ A + + L + EDDE ++ F++A
Sbjct: 180 VGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEV----VTPFSNA 235
Query: 208 GVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQKTDAT 263
G LS ++F W++ L G + ++ +P + S+ A S LE +++
Sbjct: 236 GFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTY 295
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
L + + +VW+ + L+ FA V T++ Y+ P+L+ FV +L+G+ +S + G+VL +
Sbjct: 296 KLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYS--NQGVVLVTT 353
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINV 380
F AK VE +R WYF + GI +RS L +IY++ + + G +SG IIN++ V
Sbjct: 354 FFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTV 413
Query: 381 DVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440
D ERI F Y+H W+L +Q+ LAL+ILY++LG + AA +T VM+ N PLA +E
Sbjct: 414 DAERISAFSWYMHDPWILVLQISLALLILYRSLGLG-SIAAFAATFLVMLGNIPLAKLEE 472
Query: 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500
+F +ME+KD R+K TSE L +MR+LKL WE +FL K+L LR IE LKK++Y +A
Sbjct: 473 KFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAA 532
Query: 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTK 560
I+ + WA+P+ VS FG C+LLK PL SG +++ALATFRILQ PIY LP+ ISMI QTK
Sbjct: 533 ISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTK 592
Query: 561 VSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMK 619
VSL RI F+ D+ Q+ + S +S + +++ G ++WD ++ PT+K + K
Sbjct: 593 VSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWD---DSSPIPTLK-DIRFK 648
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I G +A+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G + ENI
Sbjct: 649 IPHGMNIAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEENI 707
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LFGK M++ +Y+ VLE C+LN+D+E++ D +V+GERGINLSGGQKQRIQ+ARA+Y ++
Sbjct: 708 LFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDA 767
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQLEFL ADL+LVMKDG+I Q
Sbjct: 768 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQ 827
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSR-VPCQMSQITEERFARPISC 858
+GKY +++ + ++ + + AH +L V+ ++ ++ + S+++ + +
Sbjct: 828 AGKYNEIL-ESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSNDEEKQEEDL 886
Query: 859 GEFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWA 917
G+ Q+E+ E G+V +TVY ++ L Y GALVP+IL+ Q+LFQ L +GSNYW+AW
Sbjct: 887 PSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWV 946
Query: 918 T----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973
T D K VS LI V++FL+ SSF IL RA+L A K A LF M +FRA
Sbjct: 947 TPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRA 1006
Query: 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033
+SFFD+TP RILNR STDQS VD +P + + LA A + +L II +M Q AWQV +F
Sbjct: 1007 SMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVF 1066
Query: 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSH 1093
+ ++ WY+ YYI+ ARELAR+ G ++P++ HFSE+++G TTIR F+QE RF
Sbjct: 1067 IPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIM 1126
Query: 1094 SLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL 1153
L D YS + FH MEWLC R++LL AF L L+ILV++P I+PS AGLA TY L
Sbjct: 1127 RLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYAL 1186
Query: 1154 NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213
NLN LQA +IW LC++ENKMISVER+LQ+ +IPSE LVI+++RP WP G+I + NL
Sbjct: 1187 NLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNL 1246
Query: 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1273
V+Y P LPMVL+G+TCTF G K G+VGRTG GKSTLIQ LFR+VEP+ G I IDG++I
Sbjct: 1247 QVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINI 1306
Query: 1274 SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1333
IGL DLRSRLSIIPQ+P +F+GTVR+NLDPLE+++D +IWE ++KC L + +R+ +
Sbjct: 1307 LTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELK 1366
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
LD+PV+E+G+NWSVGQRQLVCL RVLLK+ ++L+LDEATAS+DTATD +IQ+T+R+ S
Sbjct: 1367 LDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSG 1426
Query: 1394 CTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444
CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLED SSSFSKLVAE+
Sbjct: 1427 CTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEY 1477
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/1278 (50%), Positives = 868/1278 (67%), Gaps = 30/1278 (2%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----K 257
S + +A + +ITF W+N LF G + LE +P I ++A S ++ L+ K
Sbjct: 235 SPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK 294
Query: 258 QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG 317
+ ++ VW+ A+NA FA VN +YIGP+LI +FV FLS K S H G
Sbjct: 295 EGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNH-G 353
Query: 318 LVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGII 374
+LA FL AK VE++TQRQW FGA ++G+R+R+AL IY++ + + +SG I
Sbjct: 354 YLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEI 413
Query: 375 INMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434
IN ++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N P
Sbjct: 414 INYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYP 472
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494
L Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K
Sbjct: 473 LTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKS 532
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELIS 554
L + F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S
Sbjct: 533 LRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLS 592
Query: 555 MIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTIK 613
+ Q+KVS RI ++++ +K E SK ++++++IE G ++W E +PT+
Sbjct: 593 ALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSW---EPESSRPTLD 649
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+ +K+ G KVAVCG+VGSGKSSLLSSILGEI ++ G ++V GK+AYVPQS WI +G
Sbjct: 650 DIE-LKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSG 707
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TIR+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+AR
Sbjct: 708 TIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIAR 767
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVY N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM+
Sbjct: 768 AVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQ 827
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV----------NPPQEDKCLSRVPCQ 843
+G++ Q+GK+E+L+ QN + AH ++LD + +D S
Sbjct: 828 NGRVMQAGKFEELL-KQNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKDDTASIAESL 886
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
+ E + + + QDE+TE G + VY A++T V G LVP I+L Q F
Sbjct: 887 QTHCDSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCF 946
Query: 904 QALQMGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959
Q LQ+ SNYW+AW + K+ +++ V+ L+ GSS +L R +L+A + TA
Sbjct: 947 QMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTA 1006
Query: 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019
+ F M+ S+FRAP+SFFDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I
Sbjct: 1007 ETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTI 1066
Query: 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTI 1079
+MSQ AWQV +F+ + ++YQ YY TAREL+RM G +APILHHF+ES+AGATTI
Sbjct: 1067 FVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTI 1126
Query: 1080 RCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA 1139
R F+Q +RF+ + LID +S FH MEWL R+NLL +F F L++LVTLP
Sbjct: 1127 RAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGV 1186
Query: 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1199
I+PS+AGL TYGL+LNVLQA VIWN+CN ENKMISVERILQ++ IPSEAPLVI RP
Sbjct: 1187 INPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPL 1246
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
WP+ G I +L V+Y P VLK ITC FPG KKIGVVGRTGSGKSTLIQALFR+V
Sbjct: 1247 DNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIV 1306
Query: 1260 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN 1319
EPS G I+ID VDI+ IGL DLRSRL IIPQDP LF GT+R NLDPL Q++D EIWE I+
Sbjct: 1307 EPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAID 1366
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
KC L +++R LDA V E+GENWSVGQRQLVCL RVLLKK ILVLDEATAS+D+AT
Sbjct: 1367 KCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSAT 1426
Query: 1380 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
D VIQ+ I +E TV+T+AHRI TVI++DLVLVL +G++ E+DSP +LL+ S FSK
Sbjct: 1427 DGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSK 1486
Query: 1440 LVAEFLRRTSKSNRNRDL 1457
L+ E+ R++ + DL
Sbjct: 1487 LIKEYSLRSNHFAGSNDL 1504
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1085 (51%), Positives = 751/1085 (69%), Gaps = 39/1085 (3%)
Query: 378 INVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLAN 437
++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N PL
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYPLTR 59
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K L
Sbjct: 60 LQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRL 119
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S +
Sbjct: 120 QDFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 558 QTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
Q+KVS RI ++++ + QK + ++ ++ +++IE G ++W E +PT+ +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSW---EPESSRPTLDDIE 236
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+K+ G KVA+CG+VGSGKSSL SSILGEI ++ G ++V GK+AYVPQS WI +GTIR
Sbjct: 237 -LKVKSGMKVAICGAVGSGKSSLPSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSGTIR 294
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+ARAVY
Sbjct: 295 DNILFGSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVY 354
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM++G+
Sbjct: 355 QNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGR 414
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPI 856
+ Q+GK+E+L+ V ++ N +E K +
Sbjct: 415 VMQAGKFEELLKQNIGFEVLTQCDSEHNISTENKKKEAKLV------------------- 455
Query: 857 SCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAW 916
QDE+TE G + VY ++T V G LVP I+L Q FQ LQ+ SNYW+AW
Sbjct: 456 ---------QDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAW 506
Query: 917 ----ATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
+ K+ +++ V+ L+ GSS +L R +L+A + TA+ F M+ S+FR
Sbjct: 507 TAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFR 566
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+S+FDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I +MSQ AWQV +
Sbjct: 567 APMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVI 626
Query: 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRS 1092
F+ + ++YQ YY T REL+RM G +APILHHF+ES+AGATTIR F+Q +RF+ +
Sbjct: 627 FIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSN 686
Query: 1093 HSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG 1152
LID +S FH MEWL R+NLL +F F L++LVTLP I+PS+AGL TYG
Sbjct: 687 LVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYG 746
Query: 1153 LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L+LNVLQA VIWN+CN ENKMISVERILQ + IPSEAPLVI + RP WP+ G I +
Sbjct: 747 LSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRD 806
Query: 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272
L V+Y P VLK ITC FPG KKIGVVGRTGSGKSTLIQALFR+VEPS G I+ID VD
Sbjct: 807 LQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVD 866
Query: 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR 1332
I+ IGL DLRSRL IIPQD LF GT+R NLDPL Q++D+EIWE ++KC L +++R
Sbjct: 867 ITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDE 926
Query: 1333 LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS 1392
LDA V E+GENWSVGQRQLVCL RVLLKK ILVLDEATAS+D+ATD VIQ+ I +E
Sbjct: 927 KLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFK 986
Query: 1393 RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1452
TV+T+AHRI TVI++DLVLVL +G++ E+DSP +LL+ S FSKL+ E+ R++
Sbjct: 987 DRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNHFA 1046
Query: 1453 RNRDL 1457
+ DL
Sbjct: 1047 GSNDL 1051
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1394 (40%), Positives = 829/1394 (59%), Gaps = 75/1394 (5%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLL-VLLCFNATY 173
PL L ++WV + V+ + +L LS L F+S PL VLL +
Sbjct: 160 PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKG 219
Query: 174 ACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELL 233
+ S++ P + +N+S +ASA +SK + W+N L ++G L L
Sbjct: 220 STGVVVTTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLD 279
Query: 234 HIPPIPQSETANDASSLLEESLRK-QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASY 292
+P + A ++L E K Q+ + +I WK +A A A + Y
Sbjct: 280 QVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKEIAFTAVLAIIRLSVIY 339
Query: 293 IGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352
+GP LI +FV F SGK S Y LVL + L AK VE L+ Q+ F + ++G+ +RS
Sbjct: 340 VGPVLIQSFVDFTSGKRSSPSQGYYLVL--ILLIAKFVEVLSTHQFNFNSQKLGMLIRST 397
Query: 353 LTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+QV A+V+L
Sbjct: 398 LITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLL 457
Query: 410 YKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466
Y LG + + T +F+++ R R+ +M +D+R+KAT+E L MRV
Sbjct: 458 YNTLGPSVVTTVIGLTGIFVFILLGT----KRNNRYQFSLMMNRDSRMKATNEMLNYMRV 513
Query: 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTP 526
+K +WE F +++L+ RE+E L K+LY+ + + W++P L+S +TF + L
Sbjct: 514 IKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVK 573
Query: 527 LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586
L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ + E +
Sbjct: 574 LDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGC 633
Query: 587 -SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+VA++I+ G ++WD ++ +P I+ + ++ KG A+ G+VGSGKSSLL+S+LG
Sbjct: 634 DGNVAVEIKDGSFSWDDEDD---EPAIENIN-FEVKKGELAAIVGTVGSGKSSLLASVLG 689
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705
E+ ++SG ++V G AYV Q+SWIQ GT+++NILFG M +S Y EVL+ C L +D+++
Sbjct: 690 EMHKLSGK-VRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQI 748
Query: 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
GD + +GERGINLSGGQKQRIQLARAVY SDVY+ DD FSAVDAHTG+ +FK+C+
Sbjct: 749 MEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVR 808
Query: 766 GLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSELVRQMKAHRK 823
G L KT+L THQ++FL D +LVM+DG I QSGKY++L++ ELV AH
Sbjct: 809 GALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELV---AAHET 865
Query: 824 SLDQVNPPQEDKCLSRVPC-----------------------QMSQITEERFARPISC-- 858
S++ V + VP + + + R R S
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMES 925
Query: 859 ---GEFSGRS-----------------QDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
E + S ++E+ E+G+V + VY + T Y + +++
Sbjct: 926 PRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVF 985
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQ--LIGVFIFLSGGSSFFILGRAVLLATIAI 956
V +QA M S+YW+A+ T K +VS + I V++ ++ S + RA + + +
Sbjct: 986 FSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGL 1045
Query: 957 KTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016
KTAQ F ++ S+ AP+SFFD+TPS RIL+R STDQ+ VD IP+ + +A LL
Sbjct: 1046 KTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLL 1105
Query: 1017 SIIILMSQAAWQVFPLFLVILG-ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAG 1075
SI I+ Q AW F++ LG ++IWY+ YY+ ++REL R+ KAP++HHFSESIAG
Sbjct: 1106 SIFIVTCQYAWPTV-FFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAG 1164
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
TIR F ++ F + ++ + FHN G+ EWL R+ L+ ++ + + +V L
Sbjct: 1165 VMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVML 1224
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
P + I P GL+ +YGL+LN + W I+ C +ENKM+SVERI QFT+IP+EA IK
Sbjct: 1225 PSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKE 1284
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
SRP P WP G I LE++ V+Y P P+VLKG+T G +KIGVVGRTGSGKSTLIQ L
Sbjct: 1285 SRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVL 1344
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FR+VEPSGG+I+IDG+DI +GL DLRSR IIPQ+P+LF+GTVR+N+DP E++SD+EIW
Sbjct: 1345 FRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIW 1404
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
+ + +C L ++V LD+ VA++GENWSVGQRQL+CL RV+LK+ RIL LDEATAS+
Sbjct: 1405 KSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASV 1464
Query: 1376 DTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
D+ TD +IQ+ IRE+ S CT+I++AHRIPTV+D D VLV+D GK EYDSP +LLE S
Sbjct: 1465 DSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQS 1523
Query: 1436 SFSKLVAEFLRRTS 1449
F+ LV E+ R++
Sbjct: 1524 LFAALVQEYALRSA 1537
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1261 (42%), Positives = 790/1261 (62%), Gaps = 38/1261 (3%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK- 259
+S FA AG+ S ++F WLN L +RG ++ LE IP + + E A SL EE+L +QK
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKR 263
Query: 260 ----TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH 315
+ S+ +V + VW+ L + FA + +A GP L+ F+ G ++S+
Sbjct: 264 RLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEG---NASFR 320
Query: 316 Y-GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSS 371
Y GLVLA + F+K +ESL+QRQWYF +G+RVRS LT I K+ + + + S
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
I+N VD RIG+F + H++W Q+ +AL IL+ ++G A F+AL I ++
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVA-TFSALAVIILTVLC 439
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491
N P+A Q +F S +M ++D R+KA +E+L +M+VLKL +WE F K + +LR IE SL
Sbjct: 440 NAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSL 499
Query: 492 KKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551
K + A LFW+SP VS TF C L PL + V + +AT R++Q+P+ +P+
Sbjct: 500 KAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPD 559
Query: 552 LISMIAQTKVSLYRIQEFIK--EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
+I + Q KV+ RI F++ E + + S+ + AI I++ ++W+ E+ K
Sbjct: 560 VIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWE--EKGSTK 617
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669
P ++ +++ G KVAVCG VGSGKS+LL++ILGE P +SG I +G AYV Q++W
Sbjct: 618 PNLR-NVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGT-IDFYGTIAYVSQTAW 675
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
IQTGTIR+NILFG M + Y E ++ +L++D+E+ DGD + +GERG+NLSGGQKQRI
Sbjct: 676 IQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRI 735
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
QLARA+Y ++D+Y+ DDPFSAVDAHT + LF++ +M L+ K VL THQ++FL A D V
Sbjct: 736 QLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSV 795
Query: 790 LVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV------NPPQEDKCLSRVPCQ 843
L+M DG+I ++ Y++L+A ++ + + AHR++ NP + K ++RV
Sbjct: 796 LLMSDGEITEADTYQELLA-RSRDFQDLVNAHRETAGSERVVAVENPTKPVKEINRVISS 854
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
S++ + +R I + E+ E G Y ++ + L QV F
Sbjct: 855 QSKVLKP--SRLI---------KQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTF 903
Query: 904 QALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
Q+ N W+A D +VS +LI V++ + S ++ R+V + + +K++ LF
Sbjct: 904 AVGQILQNSWMAANVDNP-QVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLF 962
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
++ S+FRAP+SF+DSTP RIL+R S+D S VD D+P+ L + + + + +++
Sbjct: 963 SQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLA 1022
Query: 1024 QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
WQV + + ++ ++ Q YY TA+EL R+ GT ++ + +H +ES+AGA TIR F+
Sbjct: 1023 IVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFD 1082
Query: 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPS 1143
+E RF +S +LID + FH+ EWL R+ + ++ LP
Sbjct: 1083 EEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSG 1142
Query: 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP 1203
G+A +YGL+LN+ + + N C + N +ISVER+ Q+T++ EAP VI+ +RP WP
Sbjct: 1143 FIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWP 1202
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+G++E+ +L ++Y P+VLKGI+CTF G KIG+VGRTGSGK+TLI ALFR+VEP G
Sbjct: 1203 VTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVG 1262
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G+I++DGVDIS IG+ DLRSR IIPQDP LF GTVR NLDPL QHSD EIWEV+ KC L
Sbjct: 1263 GKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQL 1322
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
E+V++ + LD+ V EDG NWS+GQRQL CL R +L++ R+LVLDEATASID ATD ++
Sbjct: 1323 KEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLIL 1382
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
Q+TIR E + CTVITVAHRIPTV+D +VL + +G+++EYD P +L++D +S F KLV E
Sbjct: 1383 QKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKE 1442
Query: 1444 F 1444
+
Sbjct: 1443 Y 1443
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/1438 (39%), Positives = 844/1438 (58%), Gaps = 98/1438 (6%)
Query: 85 SVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVC------------ 132
+V++ V + +VV + + W L+ L+W++H V LV
Sbjct: 102 TVAVTVLLSFCSVVLCVLAFTGKRRTQRPWNLIDPLFWLIHAVTHLVIAVLVLHQKRFAA 161
Query: 133 -----------VSVYLLTHLSSI-GLPHILPEA----KAVD---FVSLPLLVLLCFNA-- 171
+S ++LT L ++ G+ H L +A +A D F S PL L +
Sbjct: 162 LNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAFLLIASVR 221
Query: 172 ------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRG 225
T PSD + E+ D N+S +ASA V SK + W+N L +G
Sbjct: 222 GITGLVTAETNSPTKPSD---AVSVEKSD-----NVSLYASASVFSKTFWLWMNPLLSKG 273
Query: 226 RIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATS-LPQVIIHAVWKSLALNAAFA 284
L L +P + A + L E S K +++ + ++ WK + A A
Sbjct: 274 YKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENSSHPIRTTLLRCFWKEILFTAILA 333
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
V Y+GP LI +FV F SGK Y LVL + L AK VE LT Q+ F + +
Sbjct: 334 IVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVL--ILLVAKFVEVLTTHQFNFDSQK 391
Query: 345 IGIRVRSALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ +RS L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+Q
Sbjct: 392 LGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQ 451
Query: 402 VFLALVILYKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATS 458
V +ALV+LY +LGA+ A + T +F+++ R + +M +D+R+KAT+
Sbjct: 452 VTVALVLLYGSLGASVITAVIGLTGVFVFILLGT----QRNNGYQFSLMGNRDSRMKATN 507
Query: 459 ETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFG 518
E L MRV+K +WE F K++L+ R++E L K+LY+ + + W++P L+S +TF
Sbjct: 508 EMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFA 567
Query: 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKK 577
+ L L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ ++ +
Sbjct: 568 TALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSED 627
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGK 636
+ + A+++ G ++WD E+N +P L+D K+ KG A+ G+VGSGK
Sbjct: 628 AVERALGCDGNTAVEVRDGSFSWD-DEDN--EPA--LSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696
SSLL+S+LGE+ RISG ++V G YV Q+SWI+ GT+++NILFG M + Y +VL
Sbjct: 683 SSLLASVLGEMHRISGQ-VRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNV 741
Query: 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
C+L +D++M GD + +GERGINLSGGQKQRIQLARAVY DVY+ DD FSAVDAHTG
Sbjct: 742 CSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTG 801
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSEL 814
+ +FK+C+ G L KTVL THQ++FL D +LVM+DGKI +SGKY++L++ EL
Sbjct: 802 SDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGEL 861
Query: 815 VRQMKAHRKSLDQVNPPQEDKCLSRVP-----------------CQMSQITEERFARPIS 857
V AH S++ V + ++ P +S + +E +
Sbjct: 862 V---AAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSFLG 918
Query: 858 CG---EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
+ S ++E+ E G+V VY + T Y + ++L + +Q M S+YW+
Sbjct: 919 SHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWL 978
Query: 915 AWATDEKRKVSREQLIGV--FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
A+ T K +S + + + ++ ++ S + R+ + + +KTAQ F ++ S+
Sbjct: 979 AYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILH 1038
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+SFFD+TPS RIL+R STDQ+ VD IP+ L + LLSI I+ Q AW
Sbjct: 1039 APMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPT-AF 1097
Query: 1033 FLVILG-ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
F++ LG ++IWY+ YY+ ++REL RM KAPI+HHFSESIAG TIR F ++ F
Sbjct: 1098 FVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQE 1157
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+ ++D + FHN G+ EWL R+ L+ ++ + + +V LP + I P GL+ +Y
Sbjct: 1158 NVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSY 1217
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
GL+LN + + I+ C VENKM+SVERI QFT+IPSE+ K + P WP G + LE
Sbjct: 1218 GLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLE 1277
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
+L V+Y P P+VLKGIT G +K+GVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+
Sbjct: 1278 DLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGI 1337
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331
DIS +GL DLRSR IIPQ+P+LF+GTVR+N+DP EQ+SD+EIW+ + +C L ++V
Sbjct: 1338 DISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKP 1397
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
LD+ V ++GENWSVGQRQL+CL RV+LK+ R+L LDEATAS+D+ TD VIQ+ IRE+
Sbjct: 1398 EKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDF 1457
Query: 1392 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
+ CT+I++AHRIPTV+D D VLV+D GK E+DSP +LLE S F+ LV E+ R++
Sbjct: 1458 ASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAALVQEYALRSA 1514
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1446 (39%), Positives = 835/1446 (57%), Gaps = 63/1446 (4%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R R G+I +A V + C + FI ++G G N I V+ ++W V
Sbjct: 54 RGRKKGWIFVA------VAICCAITSFI-FLGVGL----NSLIHGGNDVT-EISWVACFV 101
Query: 98 VAL--CSRYYRTLGEHKRWPLVLV-LWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAK 154
+ S L +W +LV +WWV ++ LV S LL + I + IL
Sbjct: 102 EGIIWVSLAVSLLVNGSKWVNILVSVWWVSFALLDLVAKSGILLQG-NGIRILDILTLPM 160
Query: 155 AVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKIT 214
++ + + L +A C SD PLL + K + A+AG S ++
Sbjct: 161 SLLLLLCSWMNLRSSSAAAQDCSVTGLSD---PLLTKNPR----KESARLATAGFFSILS 213
Query: 215 FHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLPQ------V 268
F W+N L G + L IP + + A A ++ D +S +
Sbjct: 214 FSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRA 273
Query: 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK 328
++ +K A FA + T A P ++ FV + DH G + + K
Sbjct: 274 VVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDY--ANSDHRDLRNGFFNLACLVMLK 331
Query: 329 TVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERI 385
VESLT R WYF + R G+R+RSAL V YK+ + + G SSG I+N I VD R+
Sbjct: 332 LVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRM 391
Query: 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSM 445
G+F + H W L +Q+ L+ +L+ +GA AF L + + N P A + +
Sbjct: 392 GEFLWWFHSGWSLSLQLLLSTAVLFGVVGAG-AFPGLILLLLCGLLNLPFAKMLQNCQTQ 450
Query: 446 IMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505
M A+D R+++TSE L SM+V+KL SWE EF KK+ R+ E L K T + +FL+
Sbjct: 451 FMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLY 510
Query: 506 WASPTLVSVITFGVCILLKT-PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
W SPT+VS + F C LLK+ PL + + + LAT R++ EP+ +P+ IS I Q VS
Sbjct: 511 WMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQ 570
Query: 565 RIQEFIKEDNQKKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKG 623
R+ F+ +D K E + AS A+DI+ G + W E K PT++ ++I G
Sbjct: 571 RLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGW---EPETKIPTLR-NIHLEIKHG 626
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK 683
KVAVCG VG+GKSSLL ++LGEIP++SG +KV G AYV Q+SWIQ+GTIR+NIL+GK
Sbjct: 627 QKVAVCGPVGAGKSSLLHAVLGEIPKVSGT-VKVFGSIAYVSQTSWIQSGTIRDNILYGK 685
Query: 684 DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743
M Y ++ CAL++D+ + GDL+ +G+RGINLSGGQKQRIQLARAVY+++DVY+
Sbjct: 686 PMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADADVYL 745
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803
DDPFSAVDAHT LF +C+ L +KTV+ THQ+EFL D +LVM++G I QSGKY
Sbjct: 746 LDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQSGKY 805
Query: 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSG 863
E+L+ + + + AH ++ V P ++ L + + ++R R ++ E
Sbjct: 806 EELLM-MGTAFQQLVNAHNDAV-TVLPLASNESLG----DLRKEGKDREIRNMTVVEKIE 859
Query: 864 R------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
+Q+E+ E G V + +I + L+ +L QV F Q S
Sbjct: 860 EEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAAST 919
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YW+A+A K++ LIGV+ +S S+ F+ RA+ A + +K ++ F +VF
Sbjct: 920 YWLAFAIGIP-KITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVF 978
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
+AP+ FFDSTP RIL R S+D + +D D+P+ + ++L + +++M+ WQV
Sbjct: 979 KAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVII 1038
Query: 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
+ L+ L + Q YY+ +AREL R+ GT KAP++++ +E+ G TIR F RF
Sbjct: 1039 IALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKN 1098
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+L+D + + F + MEW+ LRI L N F ++L+ +P+ I P L GL+ +Y
Sbjct: 1099 YLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSY 1158
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
L L Q ++ C + N +ISVERI Q+ NIP E P +I + RP WPS+G I L+
Sbjct: 1159 ALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQ 1218
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
L ++Y P P+VLKGI+CTF ++GVVGRTGSGKSTLI ALFR+VEP+ G ILIDG+
Sbjct: 1219 ELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGI 1278
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331
DIS IGL+DLR +LSIIPQ+P LF+G +RTNLDPL +SD EIW+ + KC L +
Sbjct: 1279 DISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLP 1338
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
LD+ V+++GENWSVGQRQL CL RVLLK+ +ILVLDEATASID+ATD +IQ+ IREE
Sbjct: 1339 NKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEF 1398
Query: 1392 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1451
+ CTVITVAHR+PTVID+D+V+VL G ++EY+ P +L+E + S FSKLVAE+ + +
Sbjct: 1399 ADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMETD-SYFSKLVAEYW-ASCRG 1456
Query: 1452 NRNRDL 1457
N +++L
Sbjct: 1457 NSSQNL 1462
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | ||||||
| 255547892 | 1464 | multidrug resistance-associated protein | 0.980 | 0.976 | 0.742 | 0.0 | |
| 224102345 | 1361 | multidrug resistance protein ABC transpo | 0.914 | 0.979 | 0.751 | 0.0 | |
| 225425888 | 1462 | PREDICTED: ABC transporter C family memb | 0.976 | 0.974 | 0.711 | 0.0 | |
| 449435456 | 1444 | PREDICTED: ABC transporter C family memb | 0.956 | 0.966 | 0.701 | 0.0 | |
| 449525006 | 1444 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.956 | 0.966 | 0.700 | 0.0 | |
| 356528244 | 1454 | PREDICTED: ABC transporter C family memb | 0.982 | 0.984 | 0.674 | 0.0 | |
| 356510881 | 1452 | PREDICTED: ABC transporter C family memb | 0.984 | 0.988 | 0.670 | 0.0 | |
| 297738346 | 1363 | unnamed protein product [Vitis vinifera] | 0.917 | 0.981 | 0.659 | 0.0 | |
| 357131484 | 1502 | PREDICTED: ABC transporter C family memb | 0.975 | 0.947 | 0.594 | 0.0 | |
| 56784517 | 1487 | putative MRP-like ABC transporter [Oryza | 0.969 | 0.950 | 0.602 | 0.0 |
| >gi|255547892|ref|XP_002515003.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] gi|223546054|gb|EEF47557.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2143 bits (5552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1072/1444 (74%), Positives = 1226/1444 (84%), Gaps = 14/1444 (0%)
Query: 20 NVAFFIGLFTRLWIEILKRRRDDGYILMARRAA------GLVIVLCNVLIFILYMGFGFY 73
NVAF++ L L ++ILK RR + +A + VLCNV++ I +GFGF
Sbjct: 27 NVAFWVLLLAWLLMDILKGRRGGSDLDKENKAVEGSKLFTRITVLCNVILLIFNLGFGFR 86
Query: 74 EYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCV 133
EY + R ++ KS+ TW LATVV S+ R + E +WPLVL+LWWV ++ V
Sbjct: 87 EYLDRRDINCKSI----TWILATVVVFYSQQ-RNVREGNKWPLVLILWWVFSCIMYSASV 141
Query: 134 SVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREED 193
S+Y +TH SSI LP+ LP+ V+F+S P +LLC A C R + L PLL+EE
Sbjct: 142 SIYFITHFSSIQLPNPLPKPNIVEFISFPFSILLCCLALRFSCSTRIGTGLKQPLLQEER 201
Query: 194 DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEE 253
L K+ S+F +AG+ S+ITF WLN LF+RGRIQKLEL +IP +PQSETA +SSLLEE
Sbjct: 202 KRVL-KDSSSFTTAGIWSQITFQWLNPLFRRGRIQKLELSNIPLVPQSETAKCSSSLLEE 260
Query: 254 SLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS 313
SL K+K ++++LP+ I +AVWKSLA+N FAGVNTIASY+GP LIT+FV+FLS +H+ S
Sbjct: 261 SLGKRKNESSNLPKAIAYAVWKSLAINGVFAGVNTIASYMGPLLITSFVNFLSEEHEDSG 320
Query: 314 YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGI 373
Y YGL+LA +F +KT+ESLT+RQWYFGA RIGIRVRSAL V+IYK+S+++KF+GPS+G
Sbjct: 321 YLYGLILAFIFFMSKTIESLTERQWYFGAQRIGIRVRSALMVMIYKKSLSVKFSGPSNGT 380
Query: 374 IINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433
IINMINVDVERIGDF IHR+WLLP+QVFLALVILYKNLGAAP+ AAL STIF+MVSNT
Sbjct: 381 IINMINVDVERIGDFCWNIHRVWLLPLQVFLALVILYKNLGAAPSIAALSSTIFIMVSNT 440
Query: 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKK 493
PLAN+QE HS IMEAKD+RIKATSETLKSMRVLKL SWE EFL KLL+LREIER+ L+
Sbjct: 441 PLANKQEELHSDIMEAKDSRIKATSETLKSMRVLKLYSWESEFLTKLLQLREIERNKLRS 500
Query: 494 YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELI 553
YLYT SAIAFLFWASPTLVSVITFGVCILLK PLT+G VLSALATFRILQEPIYNLPELI
Sbjct: 501 YLYTSSAIAFLFWASPTLVSVITFGVCILLKIPLTTGTVLSALATFRILQEPIYNLPELI 560
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIK 613
SMIAQTKVS+YRIQEFIK++ Q+K I+ S+ASD+AI+IE GEYAW+ + + +KP IK
Sbjct: 561 SMIAQTKVSVYRIQEFIKDEGQRKQISYHNSQASDIAIEIETGEYAWERSDRDIRKPIIK 620
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+T+K+KIMKG KVAVCGSVGSGKSSLL SILGEIPRISGA IKV+GKKAYVPQS+WIQTG
Sbjct: 621 ITEKLKIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGAGIKVYGKKAYVPQSAWIQTG 680
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
++EN+LFGKDM ++FYE+V+EGCALNQDI +W GDL+V+GERGINLSGGQKQRIQLAR
Sbjct: 681 IVKENVLFGKDMDKAFYEDVMEGCALNQDIRIWTHGDLTVIGERGINLSGGQKQRIQLAR 740
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVYSNSDVYI DDPFSAVDAHTGTHLFK+CL LLSQKTV+Y THQLEF+DAADLVLVMK
Sbjct: 741 AVYSNSDVYILDDPFSAVDAHTGTHLFKKCLAQLLSQKTVIYATHQLEFVDAADLVLVMK 800
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEER 851
DG I QSGKYEDLIAD SELVRQM AH+KSL+QVNPP ED L+ V CQ++Q +TEE
Sbjct: 801 DGIIVQSGKYEDLIADPTSELVRQMAAHKKSLNQVNPPPEDNALTSVACQLNQNEVTEEE 860
Query: 852 FARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
PIS S +Q+E+TE GRVKW+VYS F+T YKGALVPVILLCQV FQ LQMGSN
Sbjct: 861 LEEPISNSRLSEGTQEEETETGRVKWSVYSTFVTSAYKGALVPVILLCQVFFQGLQMGSN 920
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YWIAWA++++ K+SREQLIG+F+ LSGGSS FILGRAVLLA+IA++TAQRLFL MI S+F
Sbjct: 921 YWIAWASEDRHKISREQLIGIFVLLSGGSSIFILGRAVLLASIAVETAQRLFLGMIKSIF 980
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
RAPISFFDSTPSSRILNR S DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ AWQ+F
Sbjct: 981 RAPISFFDSTPSSRILNRSSMDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQVAWQIFI 1040
Query: 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
LFLVILGIS+WYQAYYITTARELARMVG RKAPILHHFSESIAGA TI CFNQ++RFL+R
Sbjct: 1041 LFLVILGISLWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIHCFNQQDRFLMR 1100
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+ SLIDDYS + FHN GTMEWLCLRIN LFN FFLVLIILV LPRSAIDPSLAGLAATY
Sbjct: 1101 NLSLIDDYSRIVFHNTGTMEWLCLRINFLFNLVFFLVLIILVNLPRSAIDPSLAGLAATY 1160
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI++SRP+P+WP G+IEL
Sbjct: 1161 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDSRPNPKWPVDGRIELV 1220
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
NL VQY+P+LPMVLK ITC FPG KKIGVVGRTGSGKSTLIQALFRV+EPS G+ILIDG
Sbjct: 1221 NLCVQYSPSLPMVLKSITCIFPGGKKIGVVGRTGSGKSTLIQALFRVIEPSEGQILIDGQ 1280
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331
DIS IGL+DLRS L IIPQDP LFQGTVRTNLDPL++HSD EIWEV+ KC LA+IVRQD
Sbjct: 1281 DISKIGLRDLRSGLGIIPQDPTLFQGTVRTNLDPLQEHSDHEIWEVLKKCRLADIVRQDS 1340
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
RLL+APVAEDGENWSVGQRQLVCLARVLLKK+RILVLDEATASIDTATDN+IQ IREET
Sbjct: 1341 RLLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATDNIIQGAIREET 1400
Query: 1392 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1451
SRCTVITVAHRIPTVIDNDLVLVLDEGKV+EYD P QLL+D+SSSFSKLVAEFLRR+SK
Sbjct: 1401 SRCTVITVAHRIPTVIDNDLVLVLDEGKVIEYDCPGQLLKDSSSSFSKLVAEFLRRSSKR 1460
Query: 1452 NRNR 1455
+R
Sbjct: 1461 TSHR 1464
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102345|ref|XP_002312645.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222852465|gb|EEE90012.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2094 bits (5425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1024/1362 (75%), Positives = 1156/1362 (84%), Gaps = 29/1362 (2%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLV+VLWWV + + + VS++L+T SSI LP+ PEA DF SLPLLVLLCFNA
Sbjct: 1 PLVIVLWWVFYCIFDSLSVSIHLITRFSSIELPYPWPEANIADFASLPLLVLLCFNAVTF 60
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
C + DL+IPLL+E+ E L K+ + + SAG+ SK+TF WLN LF GRI+KLEL H
Sbjct: 61 SCSTKTHDDLEIPLLQEKR-ESLFKDSTCYRSAGIWSKLTFKWLNPLFSSGRIEKLELSH 119
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
+PP+P SETA ASSLLE+S K K + +LP+ I +AVWKSL +N FAGVNTIASY G
Sbjct: 120 VPPVPASETAKYASSLLEDSFGKNKKETLNLPKAIAYAVWKSLTINGVFAGVNTIASYTG 179
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LITNFV+FLS HD S + GLVLA VF F+KTVES+TQRQWYFG RIGIRVR+AL+
Sbjct: 180 PLLITNFVNFLSENHDDSGHIPGLVLAFVFFFSKTVESVTQRQWYFGTQRIGIRVRAALS 239
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
VL+YK+S+++KFAG S+G IINMINVDVERIGDF IH +WLLP QVFLALVILY NLG
Sbjct: 240 VLVYKKSLSVKFAGSSNGKIINMINVDVERIGDFCWNIHGVWLLPFQVFLALVILYINLG 299
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AAL STI VMVSNTPLA++QER HS IMEAKD+RIKATSETLKSMRVLKL SWE
Sbjct: 300 AAPSIAALSSTILVMVSNTPLASKQERLHSRIMEAKDSRIKATSETLKSMRVLKLYSWEP 359
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKKLL+LRE ER+ L+KYLYT SAIAFLFWASPTLVSV+TFGVCILLKTPLT+G VLS
Sbjct: 360 TFLKKLLQLRETERNWLRKYLYTSSAIAFLFWASPTLVSVVTFGVCILLKTPLTTGTVLS 419
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
ALATFRILQEPIYNLPELISMIAQTKVS+ RIQ+F+ ED+QKK I S+ASD+ I+++
Sbjct: 420 ALATFRILQEPIYNLPELISMIAQTKVSIDRIQDFLSEDDQKKQIPYQASQASDITIEMK 479
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEYAW+ ++N KPTIK+T MKIMKG KVAVCGSVGSGKSSLL SILGEIP ISGA
Sbjct: 480 CGEYAWETIDQNSTKPTIKITKNMKIMKGYKVAVCGSVGSGKSSLLCSILGEIPMISGAG 539
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQTGT+R+N+LFGKDM + YE+VLEGCALNQDIE+WADGDL+VV
Sbjct: 540 VKVHGTKAYVPQSAWIQTGTVRDNVLFGKDMSKEIYEDVLEGCALNQDIEIWADGDLTVV 599
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK------------- 761
GERG+NLSGGQKQRIQLARAVYSNSDVYI DDPFSAVDAHTGTHLFK
Sbjct: 600 GERGMNLSGGQKQRIQLARAVYSNSDVYILDDPFSAVDAHTGTHLFKARIFLIFFCFLFI 659
Query: 762 -------------QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+CLM LLSQKTV+Y THQLEFLDAADLVLV KDG I QSGKYEDLIA
Sbjct: 660 SRATLLPCRYSHLKCLMQLLSQKTVIYATHQLEFLDAADLVLVTKDGVIVQSGKYEDLIA 719
Query: 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEERFARPISCGEFSGRSQ 866
D ELVRQM AHR+SL+QVNPPQED + Q++Q +TEE+F P FS ++Q
Sbjct: 720 DPTGELVRQMAAHRRSLNQVNPPQEDNPFTGGSSQLNQNEVTEEKFEGPTGTDRFSRKTQ 779
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR 926
+E +E GRVKW+VYS FIT YKGALVP+ILLCQVLFQ LQMGSNYWIAWAT++ V+R
Sbjct: 780 EEVSETGRVKWSVYSTFITSAYKGALVPIILLCQVLFQGLQMGSNYWIAWATEKSHNVTR 839
Query: 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRI 986
E+LIG+FI LSGGSS FILGRAVLLATIA++TAQRLF MI+S+F+A ISFFD+TPSSRI
Sbjct: 840 EKLIGIFILLSGGSSIFILGRAVLLATIAVETAQRLFFGMISSIFQATISFFDATPSSRI 899
Query: 987 LNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAY 1046
L+R STDQSTVDTDIPYRLAGLAFALIQLL I+ILMSQ AWQVFP+FLVILGISIWYQAY
Sbjct: 900 LSRSSTDQSTVDTDIPYRLAGLAFALIQLLCIVILMSQVAWQVFPIFLVILGISIWYQAY 959
Query: 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106
YITTARELARMVG RKAPILHHFSESI GA TIRCFNQE RFL+RS SLIDDYS + FHN
Sbjct: 960 YITTARELARMVGIRKAPILHHFSESITGAATIRCFNQEERFLMRSLSLIDDYSRIVFHN 1019
Query: 1107 CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1166
GTMEWLC+RIN LFN FFLVLIILV LP+SAIDPSLAGLAATYGLNLNVLQAWVIWNL
Sbjct: 1020 SGTMEWLCIRINFLFNLGFFLVLIILVNLPKSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1079
Query: 1167 CNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLK 1226
CNVENKMISVERILQFTNIPSEAPLVI++ RP PEWP G++EL L VQY+P+LP VLK
Sbjct: 1080 CNVENKMISVERILQFTNIPSEAPLVIEDCRPKPEWPVDGRVELIGLDVQYSPSLPKVLK 1139
Query: 1227 GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286
GITCTFPG KKIGVVGRTGSGKSTLIQALFRV+EPSGG+ILIDG+DIS IGL+DLRS+L
Sbjct: 1140 GITCTFPGGKKIGVVGRTGSGKSTLIQALFRVIEPSGGQILIDGLDISKIGLRDLRSKLG 1199
Query: 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346
IIPQDP LF+GTVRTNLDPLE+HSDQEIWEV+NKC LA+IV++D+RLLDAPV+EDGENWS
Sbjct: 1200 IIPQDPTLFRGTVRTNLDPLEKHSDQEIWEVLNKCRLADIVKRDKRLLDAPVSEDGENWS 1259
Query: 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1406
VGQRQLVCLARVLLKK+RILVLDEATASID TDN+IQ TIREETSRCTVITVAHRIPTV
Sbjct: 1260 VGQRQLVCLARVLLKKRRILVLDEATASIDIETDNIIQGTIREETSRCTVITVAHRIPTV 1319
Query: 1407 IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
IDNDL+LVL++GKV+EYDSP +LL+DNSSSFSKLV EFLRR+
Sbjct: 1320 IDNDLILVLEDGKVVEYDSPVKLLKDNSSSFSKLVIEFLRRS 1361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425888|ref|XP_002266601.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2057 bits (5330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1029/1446 (71%), Positives = 1190/1446 (82%), Gaps = 22/1446 (1%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 15 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 74
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 75 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 134
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 135 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 193
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 194 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 252
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 253 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 309
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 310 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 369
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 370 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 429
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 430 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 489
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI+LKTPLT+G VLSALATFR
Sbjct: 490 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCIVLKTPLTTGRVLSALATFR 549
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMIAQTKVS+ RIQ FI+E++QKK T PTS++S+V+IDIE GEYAW
Sbjct: 550 ILQEPIYNLPELISMIAQTKVSMNRIQLFIQEEDQKKLATYPTSESSEVSIDIEVGEYAW 609
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 610 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 667
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 668 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 727
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS SDVY DDPFSAVDAHTG HLF++CLM +LSQKTV+Y THQL
Sbjct: 728 LSGGQKQRIQLARAIYSESDVYFLDDPFSAVDAHTGAHLFQKCLMQILSQKTVIYVTHQL 787
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLVLVMKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 788 EFLDASDLVLVMKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 846
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 847 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 906
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 907 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 966
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 967 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 1026
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQVF LF+ IL ISIWYQAYYI TARELARMVG RKAPILHHFSES+AGA T
Sbjct: 1027 IVLMSQVAWQVFLLFVSILAISIWYQAYYIATARELARMVGVRKAPILHHFSESVAGAAT 1086
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FFLVL+ILV+LPRS
Sbjct: 1087 IRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRS 1146
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
AI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IPSEAPLVI+N RP
Sbjct: 1147 AISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRP 1206
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
S EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGSGKSTLIQALFRV
Sbjct: 1207 SLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRV 1266
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1318
VEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL +HSDQEIWEV+
Sbjct: 1267 VEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVL 1326
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
NKC LAEI+ QD+ LL+A VAEDGENWSVGQRQLVCLARVLL++++ILVLDEATAS+DTA
Sbjct: 1327 NKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKILVLDEATASVDTA 1386
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
TDN+IQ+TIREETS+CTVITVAHRIPTVIDNDLVLVLDEGKV+EYDSP QLL+D+SS+FS
Sbjct: 1387 TDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSPPQLLKDSSSAFS 1446
Query: 1439 KLVAEF 1444
KLV EF
Sbjct: 1447 KLVMEF 1452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435456|ref|XP_004135511.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1985 bits (5142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1400 (70%), Positives = 1159/1400 (82%), Gaps = 5/1400 (0%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIFLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSES 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWYQ YYI+TARELARMVG RKAPILHHFSE+
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSET 1049
Query: 1073 IAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132
+ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN LF+ FFL LIIL
Sbjct: 1050 VVGATIIRCFNQEDRFLKKILNLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIIL 1109
Query: 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
VTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERILQFTNI SEAP +
Sbjct: 1110 VTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPI 1169
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP +KKIGVVGRTGSGKSTLI
Sbjct: 1170 IEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPEKKKIGVVGRTGSGKSTLI 1229
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
Q LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+RTNLDPL+QHSDQ
Sbjct: 1230 QTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHSDQ 1289
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
EIWEV++KC +EI+R DQ +L+A VAEDGENWSVGQRQLVCLARVLLKK+RILVLDEAT
Sbjct: 1290 EIWEVLHKCRFSEIIRTDQAILEARVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEAT 1349
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
ASIDTAT+N+IQ+TI+EET+ CTVITVAHRIPT+IDNDLVLVLDEGKV+E+DSP QLL++
Sbjct: 1350 ASIDTATENIIQETIKEETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEFDSPSQLLKN 1409
Query: 1433 NSSSFSKLVAEFLRRTSKSN 1452
NSS FSKLVAEFLRR+S S+
Sbjct: 1410 NSSMFSKLVAEFLRRSSSSH 1429
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525006|ref|XP_004169512.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1984 bits (5139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1400 (70%), Positives = 1159/1400 (82%), Gaps = 5/1400 (0%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIXLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSES 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWYQ YYI+TARELARMVG RKAPILHHFSE+
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSET 1049
Query: 1073 IAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132
+ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN LF+ FFL LIIL
Sbjct: 1050 VVGATIIRCFNQEDRFLKKXLNLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIIL 1109
Query: 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
VTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERILQFTNI SEAP +
Sbjct: 1110 VTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPI 1169
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP ++KIGVVGRTGSGKSTLI
Sbjct: 1170 IEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPXKEKIGVVGRTGSGKSTLI 1229
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
Q LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+RTNLDPL+QHSDQ
Sbjct: 1230 QTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHSDQ 1289
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
EIWEV++KC +EI+R DQ +L+A VAEDGENWSVGQRQLVCLARVLLKK+RILVLDEAT
Sbjct: 1290 EIWEVLHKCRFSEIIRTDQAILEARVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEAT 1349
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
ASIDTAT+N+IQ+TI+EET+ CTVITVAHRIPT+IDNDLVLVLDEGKV+E+DSP QLL++
Sbjct: 1350 ASIDTATENIIQETIKEETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEFDSPSQLLKN 1409
Query: 1433 NSSSFSKLVAEFLRRTSKSN 1452
NSS FSKLVAEFLRR+S S+
Sbjct: 1410 NSSMFSKLVAEFLRRSSSSH 1429
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528244|ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1960 bits (5078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1454 (67%), Positives = 1163/1454 (79%), Gaps = 22/1454 (1%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKR--RRDDGYILMA--RRAAGLVIVLCNVL----IF 64
D +L +VNVAF + L ++ L++ R + +++ +R +V + VL I
Sbjct: 5 DALLGTVNVAFLYAILIWLLVDSLRQSTRNNHARVVLHYFKRGGPMVFAVFTVLSCAVIS 64
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHK-RWPLVLVLWWV 123
++ + FY+Y + RI+ F SVSLV+TW LAT+V+ S + + R+PLVL+LWW
Sbjct: 65 VMNIALAFYQYSSRRIIGFNSVSLVLTWVLATIVSFYSMRTKVRENKRFRFPLVLILWWF 124
Query: 124 VHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD 183
+I + +S L+ SI L L + VD VSLPLLVLLCFN CAR+ SD
Sbjct: 125 FACIIDALLLSSKLVKKFESINLWFFLSKDNVVDSVSLPLLVLLCFNV-----CARENSD 179
Query: 184 LD---IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
L+ + L +EE+ ++ F +A + SK+ F WLN +F+ GRIQKLEL HIPP+P
Sbjct: 180 LEQEQMLLQKEEESSMEEEDEQAFTNASMWSKLAFRWLNPIFKTGRIQKLELGHIPPVPP 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA +ASS+LEESLRKQK SL + I +++WKSLALNA AGVNT ASYIGP LITN
Sbjct: 240 SETAENASSVLEESLRKQKLKGGSLTKAIAYSIWKSLALNAVLAGVNTGASYIGPLLITN 299
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FL G + SS YGLVLA +F AKT ESL+QRQWYFGA RIGIRVR+ALT LIY +
Sbjct: 300 FVNFLLGDNGDSSIQYGLVLAFIFFLAKTAESLSQRQWYFGAQRIGIRVRAALTSLIYSK 359
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQV LALVILY NLG P+FA
Sbjct: 360 SLLMKCAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGGTPSFA 419
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL+KL
Sbjct: 420 AFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFLQKL 479
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LRE ER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALATFR
Sbjct: 480 LQLRETERRWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALATFR 539
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMI QTKVS+ RIQEFIKED+Q + I +SK S VAI+I+ GEY W
Sbjct: 540 ILQEPIYNLPELISMIIQTKVSVDRIQEFIKEDDQNQFINRHSSKISAVAIEIKPGEYVW 599
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+ ++ K PTI++T K+ I KG KVA+CGSVGSGKSSL+ +LGEIP +SGA KV+G
Sbjct: 600 ETNDQTHKNPTIQITGKLVIKKGQKVAICGSVGSGKSSLICCLLGEIPLVSGAVTKVYGT 659
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL+ V ERGIN
Sbjct: 660 RSYVPQSPWIQSGTVRENILFGKQMKKDFYEDVLDGCALHQDINMWGDGDLNPVEERGIN 719
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y THQL
Sbjct: 720 LSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQL 779
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFL+AADL+LVMKDGKI +SG Y+DLIA NSELV+QM A++++L Q+NP QED S
Sbjct: 780 EFLEAADLILVMKDGKIVESGSYKDLIACPNSELVQQMAAYQETLHQINPCQEDDSASCR 839
Query: 841 PCQMSQI--TEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
PCQ +QI EE + E GRS++E+ E GRVKW+VYS F+ YKG LVPVILL
Sbjct: 840 PCQKNQIEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVISAYKGVLVPVILL 896
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+G F LS G + FILGR VL+A +A++T
Sbjct: 897 CQILFQVMQMGSNYWISWATEQKGRVNNKQLMGTFALLSFGGTIFILGRTVLMAAVAVET 956
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
AQRLFL MITSVFRAP+SFFD+TPSSRI++R STDQSTVDTDIPYRLAGL FALIQLLSI
Sbjct: 957 AQRLFLGMITSVFRAPVSFFDTTPSSRIMSRSSTDQSTVDTDIPYRLAGLVFALIQLLSI 1016
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQV LF V+ ISIWYQAYYITTARELARMVG RKAPILHHFSESIAGA T
Sbjct: 1017 IVLMSQVAWQVILLFFVVFAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAAT 1076
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCFNQE F+ + +LIDDYS V FHN GTMEWL +RIN LFN F+ VL+ILVTLPRS
Sbjct: 1077 IRCFNQEKLFMTKIKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRS 1136
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF++IPSEAPL+I++ RP
Sbjct: 1137 TIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRP 1196
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
PEWP GK+EL NL ++Y+P PMVLKG+TC FP +KKIGVVGRTGSGKSTL+QALFRV
Sbjct: 1197 EPEWPKEGKVELRNLHIRYDPAAPMVLKGVTCVFPAQKKIGVVGRTGSGKSTLVQALFRV 1256
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1318
VEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNLDPLEQH+DQE+WEV+
Sbjct: 1257 VEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVL 1316
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+KCHLAEIVR+D RLLDAPVAE+GENWSVGQRQLVCLAR+LLKK+RILVLDEATASIDTA
Sbjct: 1317 SKCHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTA 1376
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
TDN+IQ+TIREET+ CTVITVAHRIPTVIDND VLVLDEG ++EYD P QLL++NSSSFS
Sbjct: 1377 TDNLIQKTIREETNGCTVITVAHRIPTVIDNDRVLVLDEGTIVEYDEPAQLLQNNSSSFS 1436
Query: 1439 KLVAEFLRRTSKSN 1452
KLV+EFLRR+S+S+
Sbjct: 1437 KLVSEFLRRSSQSS 1450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510881|ref|XP_003524162.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1946 bits (5040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1457 (67%), Positives = 1162/1457 (79%), Gaps = 22/1457 (1%)
Query: 9 LVSADKVLESVNVAFFIGLFTRLWIEILKRRR-DDGYILMARRAAGLVIVLCNVL----I 63
+V D +L +VNVAF + L ++ L++ ++ + +V + VL I
Sbjct: 1 MVVLDALLGTVNVAFLYAILIWLLVDSLRQSTLSHVRVVDCFKRGPMVFAVSTVLSCAVI 60
Query: 64 FILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW--PLVLVLW 121
++ M FY+Y + +I+ F SVSL +TW LAT+V+ S + + E+KR+ PLVL+LW
Sbjct: 61 SVMNMALAFYQYSSRKIIGFNSVSLALTWVLATIVSFYSMRTK-VRENKRFGFPLVLILW 119
Query: 122 WVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDP 181
WV I + +S+ L+ SI L L E VD VSLPLLVLLCFN CAR+
Sbjct: 120 WVFACSIDAILLSLKLVKGFESIDLWFFLSEDNVVDSVSLPLLVLLCFNV-----CAREN 174
Query: 182 SDLD----IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
SD++ + L +EE+ ++ F +A + SK+ F WLN +F+ GRI+KLEL HIPP
Sbjct: 175 SDVEQEQQLLLEKEEESSMEEEDEEAFTNASMWSKLAFRWLNPIFKAGRIKKLELGHIPP 234
Query: 238 IPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFL 297
+P SETA +ASS+LEESLRKQK + SL + I +++WKSLALNA AGVNT ASYIGP L
Sbjct: 235 VPPSETAENASSVLEESLRKQKLEGGSLTKAIAYSLWKSLALNAVLAGVNTGASYIGPLL 294
Query: 298 ITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357
ITNFV+FL G SS YGL+LA +F AKTVESL+QRQWYFGA RIGIRVR+AL LI
Sbjct: 295 ITNFVNFLLGDDGDSSIQYGLLLAFIFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLI 354
Query: 358 YKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAP 417
Y +S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQ+ LALVILY NLG P
Sbjct: 355 YGKSLLMKCAGPTQGRIINLINVDVERIGDFCWYIHGVWLLPVQIILALVILYINLGGTP 414
Query: 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFL 477
+FAA TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL
Sbjct: 415 SFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFL 474
Query: 478 KKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALA 537
+KLL+LREIER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALA
Sbjct: 475 QKLLQLREIERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALA 534
Query: 538 TFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597
TFRILQEPIYNLPELISMI QTKVS+ RI EFIKED+Q + I + TSK S+VAI+I+ GE
Sbjct: 535 TFRILQEPIYNLPELISMIIQTKVSVDRIHEFIKEDDQNQFINKLTSKISEVAIEIKPGE 594
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657
YAW+ ++ KP I++T K+ I KG KVAVCGSVGSGKSSLL +LGEIP +SGA KV
Sbjct: 595 YAWETNDQTHTKPAIQITGKLVIKKGQKVAVCGSVGSGKSSLLCCLLGEIPLVSGAVTKV 654
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+G ++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL++V ER
Sbjct: 655 YGTRSYVPQSPWIQSGTVRENILFGKQMKKEFYEDVLDGCALHQDINMWGDGDLNLVEER 714
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
GINLSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y T
Sbjct: 715 GINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYAT 774
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCL 837
HQLEFL+AADL+LVMKDGKI +SG Y++LIA NSELV+QM AH +++ ++NP QED +
Sbjct: 775 HQLEFLEAADLILVMKDGKIVESGSYKELIACPNSELVQQMAAHEETVHEINPCQEDDSV 834
Query: 838 SRVPCQMSQ--ITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPV 895
S PCQ +Q + EE + E GRS++E+ E GRVKW+VYS F+T YKGALVPV
Sbjct: 835 SCRPCQKNQMEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVTSAYKGALVPV 891
Query: 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIA 955
ILLCQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+ F+ LS + FILGR VL+A +A
Sbjct: 892 ILLCQILFQVMQMGSNYWISWATEQKGRVNNKQLMRTFVLLSLTGTIFILGRTVLMAAVA 951
Query: 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015
++TAQRLFL MITSVFRAP+SFF +TPSSRI++R STDQS VDTDIPYRLAGL FALIQL
Sbjct: 952 VETAQRLFLGMITSVFRAPVSFFVTTPSSRIMSRSSTDQSIVDTDIPYRLAGLVFALIQL 1011
Query: 1016 LSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAG 1075
LSII+LMSQ AWQV LF +L ISIWYQAYYITTARELARMVG RKAPILHHFSESIAG
Sbjct: 1012 LSIIVLMSQVAWQVILLFFAVLPISIWYQAYYITTARELARMVGIRKAPILHHFSESIAG 1071
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
A TIRCFNQE F + +LIDDYS V FHN GTMEWL +RIN LFN F+ VL+ILVTL
Sbjct: 1072 AATIRCFNQEKLFFTKVKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTL 1131
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
PRS IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF++IPSEAPL+I++
Sbjct: 1132 PRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQD 1191
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
RP PEWP GK+EL NL ++Y+P PMVLK +TC FP +KKIGVVGRTGSGKSTL+QAL
Sbjct: 1192 CRPEPEWPKEGKVELRNLHIRYDPAAPMVLKCVTCVFPAQKKIGVVGRTGSGKSTLVQAL 1251
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FRVVEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNLDPLEQH DQE+W
Sbjct: 1252 FRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHEDQELW 1311
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
EV++KCHLAEIVR+DQRLLDAPVAE+GENWSVGQRQLVCLAR+LLKK+RILVLDEATASI
Sbjct: 1312 EVLSKCHLAEIVRRDQRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASI 1371
Query: 1376 DTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
DTATDN+IQ+TIREETS CTVITVAHRIPTVIDND VLVLDEG ++EYD P QLL++NSS
Sbjct: 1372 DTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDRVLVLDEGTIVEYDEPAQLLQNNSS 1431
Query: 1436 SFSKLVAEFLRRTSKSN 1452
SFSKLV EF RR+S+SN
Sbjct: 1432 SFSKLVTEFFRRSSQSN 1448
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738346|emb|CBI27547.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1843 bits (4773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1446 (65%), Positives = 1108/1446 (76%), Gaps = 108/1446 (7%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 2 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 61
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 62 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 121
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 122 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 180
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 181 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 240 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 296
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 297 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 356
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 357 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 416
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 417 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 476
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI LAT+
Sbjct: 477 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCI-------------KLATY- 522
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
PTS++S+V+IDIE GEYAW
Sbjct: 523 -----------------------------------------PTSESSEVSIDIEVGEYAW 541
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 542 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 599
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 600 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 659
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS KQ LM L TV+Y THQL
Sbjct: 660 LSGGQKQRIQLARAIYS-----------------------KQHLM-LFFFTTVIYVTHQL 695
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLV MKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 696 EFLDASDLV--MKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 752
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 753 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 812
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 813 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 872
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 873 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 932
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQVF LF+ IL ISIWYQA +LARMVG RKAPILHHFSES+AGA T
Sbjct: 933 IVLMSQVAWQVFLLFVSILAISIWYQA-----RTKLARMVGVRKAPILHHFSESVAGAAT 987
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FFLVL+ILV+LPRS
Sbjct: 988 IRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRS 1047
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
AI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IPSEAPLVI+N RP
Sbjct: 1048 AISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRP 1107
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
S EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGSGKSTLIQALFRV
Sbjct: 1108 SLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRV 1167
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1318
VEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL +HSDQEIWEV+
Sbjct: 1168 VEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVL 1227
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
NKC LAEI+ QD+ LL+A VAEDGENWSVGQRQLVCLARVLL++++ILVLDEATAS+DTA
Sbjct: 1228 NKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKILVLDEATASVDTA 1287
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
TDN+IQ+TIREETS+CTVITVAHRIPTVIDNDLVLVLDEGKV+EYDSP QLL+D+SS+FS
Sbjct: 1288 TDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSPPQLLKDSSSAFS 1347
Query: 1439 KLVAEF 1444
KLV EF
Sbjct: 1348 KLVMEF 1353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131484|ref|XP_003567367.1| PREDICTED: ABC transporter C family member 3-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1758 bits (4553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1461 (59%), Positives = 1089/1461 (74%), Gaps = 38/1461 (2%)
Query: 14 KVLESVNVAFFIGLFTRLWIEILKRRR--------DDGYILMA-RRAAGL----VIVLCN 60
+ L+ + A F L + E KRR+ G ++ A RR A L ++ CN
Sbjct: 55 QALDYIRAAAFAILLVWILAEFAKRRKRRQEAAGHGHGAVVSAQRRGAALLQAHIVAFCN 114
Query: 61 VLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVL 120
+ +L++GF W ++VS V +W LAT+ L ++ G WP+VLV
Sbjct: 115 ASMTLLHIGFSVLGVWKQQVVSPGLVFESASWLLATLFLLYCKH-EGAGVVSNWPVVLVS 173
Query: 121 WWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARD 180
WW + L+ S++L H+ A ++F SLP ++C +
Sbjct: 174 WWFFSFLSELLITSLHLF---------HLFNSATVINFTSLPFCTIICLVVAAMRLSKAN 224
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
+L+ PLL ED + + S F+++G S++TF WLN + ++G +LEL HIP +PQ
Sbjct: 225 RKELNQPLLEGEDTDDSSR--SRFSNSGWWSRLTFRWLNPVLEKGHKVRLELEHIPSVPQ 282
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA + + L+E+L QK + L + II AVW L NA FAG NT++SY+GPFLIT
Sbjct: 283 SETAEQSYAFLQETLHTQKPEPMQLRKTIICAVWTPLVRNAVFAGFNTVSSYMGPFLITY 342
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
V LS K+ + G +LA + +KTVES+TQRQWYFGA RIG +VR+AL V IYK+
Sbjct: 343 LVELLSDKNTDKGHGRGYMLAFLLFASKTVESITQRQWYFGARRIGFQVRAALMVSIYKK 402
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+++K + +G ++N ++VDVE++ DFF YIH IWLLP Q+FLAL ILY +LGA + +
Sbjct: 403 SLSLKNSSTVAGKVVNFLDVDVEKVSDFFWYIHGIWLLPFQIFLALAILYSSLGAMASLS 462
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A+ T+ VMVSNTPL Q + IM+A+D+RIKA +E +KSMR+LKL +WE +L KL
Sbjct: 463 AVLITVLVMVSNTPLTKSQHNLNMKIMDARDSRIKAMAEAMKSMRILKLHAWETAYLDKL 522
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LR++ER L++YLYTCSAI FLFWASPTLVSVITFGVCIL+ PL++G VLSALATFR
Sbjct: 523 LKLRDVERGWLRRYLYTCSAICFLFWASPTLVSVITFGVCILVDIPLSAGTVLSALATFR 582
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-----ITEPTSKASDVAIDIEA 595
+LQ+PIYNLPEL+S+I QTKVSL RI+EFIKED Q KP ITE A ++IE
Sbjct: 583 VLQDPIYNLPELVSVITQTKVSLDRIEEFIKEDQQGKPSCYGNITEKKDLAMAGEMEIEP 642
Query: 596 GEYAWDAREENFK-KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A + K K T+K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRISGA
Sbjct: 643 GEYSWEADNSSKKTKITLKIERKVSIRKGLKVAVCGPVGSGKSSLLYSIMGEIPRISGAE 702
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
V G +AYVPQS+WIQTGTI++N+LFGK M + YEEVL+GCAL++D+E+WA+GD++VV
Sbjct: 703 TMVAGSRAYVPQSAWIQTGTIQDNVLFGKAMDKRLYEEVLQGCALDRDMELWANGDMTVV 762
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARA+YSNSDVY DDPFSAVDAHT HLFK+CL+ L+S KTV+
Sbjct: 763 GERGVNLSGGQKQRIQLARALYSNSDVYFLDDPFSAVDAHTSAHLFKECLLRLMSSKTVM 822
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y THQLEFL +DLVLVMK G+I QSG+Y+DLIAD++ EL++QM AH +SL QVNP +
Sbjct: 823 YVTHQLEFLRDSDLVLVMKGGRIVQSGRYDDLIADKDGELLKQMAAHNQSLSQVNPAKTH 882
Query: 835 KCLS--RVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
R + ++TE A + GR +E+ E GRVKW VY F+T Y GAL
Sbjct: 883 GLTKSKRHKKKQVELTEIESAHHVV-----GRECEEERESGRVKWDVYRKFVTSAYGGAL 937
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
+PV+L C V FQ LQ+ SNYWIAWA + +VS++++IG+F+ LS GSS FILGRAV L+
Sbjct: 938 IPVVLACHVFFQGLQICSNYWIAWAAERPYQVSKQKMIGLFVLLSAGSSAFILGRAVFLS 997
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQ+LFL MIT++FRAP+SFFDSTPSSRILNR STDQ+TVDTDIPYRLAGL FA+
Sbjct: 998 TIAIETAQQLFLAMITNIFRAPMSFFDSTPSSRILNRASTDQATVDTDIPYRLAGLVFAM 1057
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSES 1072
IQLLSII +MSQ AW +F LFL+I+ IS WYQ YYI++ARELARMVG RKAP+LHHFSE+
Sbjct: 1058 IQLLSIIFIMSQIAWPIFVLFLIIIAISAWYQGYYISSARELARMVGIRKAPVLHHFSET 1117
Query: 1073 IAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132
++GA TIRCFNQ +FL +S +LIDDY+ VTFHN T+EWL +RIN LFN FF++L+IL
Sbjct: 1118 VSGAATIRCFNQGEKFLAKSFALIDDYTRVTFHNSATVEWLSIRINFLFNLVFFVMLVIL 1177
Query: 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
V LPR IDPSLAGLAATYGLNLNVLQAWVIWNLC+VENKMI VERILQ++NIPSE+PL
Sbjct: 1178 VLLPRDTIDPSLAGLAATYGLNLNVLQAWVIWNLCHVENKMICVERILQYSNIPSESPLE 1237
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
+ N RP+ WP G I++E L +QY +PMVLKGI+CTFPGE+KIGVVGRTGSGKSTLI
Sbjct: 1238 VTNCRPTETWPWCGTIQIEALQIQYKLDMPMVLKGISCTFPGERKIGVVGRTGSGKSTLI 1297
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
QALFR+VEPS GRILIDGVDIS++GL DLR +LSIIPQ+P LFQGTVR NLDPL+Q+ D
Sbjct: 1298 QALFRIVEPSAGRILIDGVDISLLGLHDLRCKLSIIPQEPTLFQGTVRANLDPLQQYLDT 1357
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
EIWEV+ KC L EIVR+D RLLDAPVAEDG NWSVGQRQLVCLARVLL KK+ILVLDEAT
Sbjct: 1358 EIWEVLRKCRLDEIVREDNRLLDAPVAEDGGNWSVGQRQLVCLARVLLMKKKILVLDEAT 1417
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
AS+DTATDN+IQ+TIR+ET CTVIT+AHRIPTVID+DLVLVL EG +LE+DSP LL D
Sbjct: 1418 ASVDTATDNIIQKTIRQETDNCTVITIAHRIPTVIDSDLVLVLGEGNILEFDSPENLLRD 1477
Query: 1433 NSSSFSKLVAEFLRRTSKSNR 1453
SS+FSKLV EF+ R+ ++
Sbjct: 1478 ESSAFSKLVMEFVGRSEGRHQ 1498
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56784517|dbj|BAD82774.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] gi|56784875|dbj|BAD82115.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1753 bits (4539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1458 (60%), Positives = 1107/1458 (75%), Gaps = 45/1458 (3%)
Query: 15 VLESVNVAFFIGLFTRLWIEILK-----RRRDDGYILMARRAA-----GLVIVLCNVLIF 64
VL+ V +A F L + E+ + RR G ++ ++R +IVLCN I
Sbjct: 52 VLDYVRIASFAILLVWILAELARLNKRHRREGHGDMVSSQRKGEVLLPAYIIVLCNASIS 111
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVV 124
++++ F +W + VS + V+W L T+ L ++ G WP VL+ WW
Sbjct: 112 LMHICFSVLVFWKRQTVSLDLIFKSVSWLLVTLFLLYCKH-EGAGVVSNWPSVLLSWWFF 170
Query: 125 HLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDL 184
+ + S++LL +S A VDF SLPL +C A + D
Sbjct: 171 SFLSESLLTSLHLLHLFNS---------ATVVDFTSLPLCTFICLVAVTMRPSKANQQDQ 221
Query: 185 DIPLL-REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET 243
+ PLL RE+ D+ + F+++G S +TF WLN +F++G +LEL HIP +PQS+T
Sbjct: 222 NQPLLVREDSDD---SSTDRFSNSGWWSCLTFQWLNPIFEKGHKVRLELDHIPSVPQSDT 278
Query: 244 ANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVS 303
AN + +LL+E+L KQK + + + II AVW L N FAG+NTIASY+GPFLIT V
Sbjct: 279 ANQSYALLQETLHKQKPEPMPMRRAIICAVWTPLIANGVFAGLNTIASYMGPFLITYLVE 338
Query: 304 FLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMA 363
LS K+ + +G +LA +F +KTVESL+QRQWYFGA RIG RVR+AL V IY++S+
Sbjct: 339 LLSDKNPDKGHGHGYMLACLFFASKTVESLSQRQWYFGARRIGFRVRAALMVSIYQKSLL 398
Query: 364 IKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423
+K + +SG I+N ++VDVE++ +FF Y+HRIWLLP+Q+ LAL ILY++LGA + +A+
Sbjct: 399 MKNSSTASGKIVNFLDVDVEKVSEFFWYVHRIWLLPLQISLALAILYRSLGAMASLSAVL 458
Query: 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483
+T+ VMVSNTPLA QE + IMEAKD+RIKA +E +KSMR+LKL +WE + KLL L
Sbjct: 459 ATVLVMVSNTPLAKSQENLNMKIMEAKDSRIKAMAEAMKSMRILKLHAWETAYFDKLLNL 518
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ 543
R++ER L+KYLYTCSAIAFLFWASPTLVSV+TFGVCIL++ PL++G VLSA+ATFRILQ
Sbjct: 519 RDVERGWLRKYLYTCSAIAFLFWASPTLVSVVTFGVCILVEMPLSAGTVLSAVATFRILQ 578
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI-TEPTSKASDV----AIDIEAGEY 598
+PIYNLPEL+SM+ QTKVSL RI+EFIKE++Q KP ++ ++ D+ A++IE G Y
Sbjct: 579 DPIYNLPELVSMVTQTKVSLDRIEEFIKEEHQGKPSRSDNNTRTKDLSMTGAMEIEPGVY 638
Query: 599 AWDAREENFKKPT--IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
W+ + + KK +K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRI+GA
Sbjct: 639 GWEI-DNSLKKTKFMLKIDRKLSISKGQKVAVCGPVGSGKSSLLYSIMGEIPRINGAETT 697
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
V G +AYV QS+WIQTGTI++N+LFGKDM +SFYEEVL GCAL++D+E+WA+GD+++VGE
Sbjct: 698 VFGSRAYVAQSAWIQTGTIQDNVLFGKDMDRSFYEEVLHGCALDRDLELWANGDMTMVGE 757
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
RG+NLSGGQKQRIQLARA+YS+SDVY+ DDPFSAVDAHTG HLFK+CL+ L+S KTV+Y
Sbjct: 758 RGMNLSGGQKQRIQLARALYSDSDVYLLDDPFSAVDAHTGAHLFKECLLRLMSSKTVIYV 817
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ---- 832
THQLEFL ADLVLVMKDG+I QSGKY+DL+AD+N EL QM AH +SL QV P +
Sbjct: 818 THQLEFLRDADLVLVMKDGRIVQSGKYDDLVADRNGELSMQMAAHNQSLSQVTPAKAHVL 877
Query: 833 -EDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGA 891
++K R ++++I + GR +E+ E GRVKW +Y F+ Y GA
Sbjct: 878 TKNKSHKRRQTELTEIELDH--------NVIGRECEEERESGRVKWDIYRKFVNSAYGGA 929
Query: 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951
LVPVIL CQVLFQ LQ+ SNYWIAWA + + +VSRE++IG+F+ LS GSS FILGRA++L
Sbjct: 930 LVPVILACQVLFQGLQICSNYWIAWAAERQEQVSREKMIGIFVLLSAGSSVFILGRAIVL 989
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
+TIAI+TA + FL M S+FRAPI+FFDSTPSSRILNR STDQSTVDTDIPYRLAGL FA
Sbjct: 990 STIAIETAHQFFLGMTRSIFRAPINFFDSTPSSRILNRASTDQSTVDTDIPYRLAGLIFA 1049
Query: 1012 LIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSE 1071
LIQLLSII +MSQ AW +F LF++I+ IS WYQ+YYI +ARELARMVG RKAP+LHHFSE
Sbjct: 1050 LIQLLSIIFIMSQIAWPIFILFIIIIAISTWYQSYYICSARELARMVGIRKAPVLHHFSE 1109
Query: 1072 SIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131
+++GA TIRCFNQ +F +S +LIDDYS +TFHN T+EWLC+RIN LFN FF+ L+I
Sbjct: 1110 TVSGAATIRCFNQGEKFFRKSLALIDDYSRITFHNSATIEWLCVRINFLFNLVFFVTLVI 1169
Query: 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191
LV++PR+ IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF+NI SEAPL
Sbjct: 1170 LVSMPRNTIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNITSEAPL 1229
Query: 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251
VI++ RP WP G I++++L V+YNP +PMVLKGI+CT PGE+KIGVVGRTGSGKSTL
Sbjct: 1230 VIEDCRPRESWPWCGTIQIDSLQVRYNPDMPMVLKGISCTIPGERKIGVVGRTGSGKSTL 1289
Query: 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1311
I ALFR+VEPS GRILID VDIS++G+ DLRSRLS+IPQ+P LFQGTVRTNLDPL+QH D
Sbjct: 1290 IHALFRIVEPSEGRILIDDVDISLLGVHDLRSRLSVIPQEPTLFQGTVRTNLDPLQQHLD 1349
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
EIWEV++KC L EIVR+D RLLDAPV EDG NWSVGQRQLVCLARVLL KK+ILVLDEA
Sbjct: 1350 TEIWEVLHKCRLEEIVREDSRLLDAPVVEDGGNWSVGQRQLVCLARVLLMKKKILVLDEA 1409
Query: 1372 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
TAS+DTATDN+IQ+TIR+ET+ CTVIT+AHRIPTVID+DLVLVL EGK+LE+DSP LL
Sbjct: 1410 TASVDTATDNIIQKTIRQETNNCTVITIAHRIPTVIDSDLVLVLGEGKILEFDSPENLLR 1469
Query: 1432 DNSSSFSKLVAEFLRRTS 1449
D SS+FSKLV EF+ R+S
Sbjct: 1470 DESSAFSKLVMEFVGRSS 1487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.401 | 0.387 | 0.538 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.399 | 0.385 | 0.507 | 4.3e-301 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.886 | 0.881 | 0.450 | 6.8e-301 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.860 | 0.839 | 0.451 | 2.2e-295 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.430 | 0.407 | 0.425 | 1.3e-244 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.399 | 0.383 | 0.441 | 6.2e-238 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.838 | 0.841 | 0.396 | 7.9e-238 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.338 | 0.310 | 0.409 | 8.2e-186 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.390 | 0.369 | 0.366 | 9.7e-175 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.388 | 0.367 | 0.363 | 3.3e-173 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1613 (572.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 318/590 (53%), Positives = 400/590 (67%)
Query: 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWAT----DEK 921
Q+E+ E G V VY +ITL Y GALVP ILL QVLFQ LQ+GSNYW+AWAT D +
Sbjct: 923 QEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQ 982
Query: 922 RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDST 981
V L RA LL T KTA LF M +FR+P+SFFDST
Sbjct: 983 APVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDST 1042
Query: 982 PSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISI 1041
PS RI++R STDQS VD ++PY+ W VF +F+ ++ SI
Sbjct: 1043 PSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASI 1102
Query: 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1101
WYQ YYI AREL+R+VG KAP++ HFSE+I+GATTIR F+QE RF + L D YS
Sbjct: 1103 WYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSR 1162
Query: 1102 VTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAW 1161
F+ G MEWLC P IDPSLAGLA TYGL+LN LQAW
Sbjct: 1163 PKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAW 1222
Query: 1162 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL 1221
+IW LCN+ENK+ISVERILQ+ ++PSE PLVI+++RP WPS G++E+ +L V+Y P +
Sbjct: 1223 LIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHM 1282
Query: 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281
P+VL+GITCTF G + G+VGRTGSGKSTLIQ LFR+VEPS G I IDGV+I IGL DL
Sbjct: 1283 PLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDL 1342
Query: 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341
R RLSIIPQDP +F+GT+R+NLDPLE+++D +IWE ++KC L + VR+ ++ LD+ V+E+
Sbjct: 1343 RLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSEN 1402
Query: 1342 GENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
G+NWS+GQRQLVC DEATAS+DTATDN+IQ+T+RE S CTVIT+AH
Sbjct: 1403 GDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAH 1462
Query: 1402 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1451
RI +VID+D+VL+L G + EYD+P +LLED SSSFSKLVAE+ R+S S
Sbjct: 1463 RISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 4.3e-301, Sum P(2) = 4.3e-301
Identities = 299/589 (50%), Positives = 385/589 (65%)
Query: 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWA---TD-EK 921
Q+E+ G+V VY +++ YKGAL+P+I+L Q FQ LQ+ SN+W+AWA T+ ++
Sbjct: 922 QEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDE 981
Query: 922 RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDST 981
KV L RA L+AT + AQ+LFLNM+ SVFRAP+SFFDST
Sbjct: 982 SKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDST 1041
Query: 982 PSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISI 1041
P+ RILNR S DQS VD DIP+RL G WQVF L + +
Sbjct: 1042 PAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACF 1101
Query: 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1101
W Q YY+ ++REL R+V +K+PI+H F ESIAGA TIR F QE RF+ R+ L+D +
Sbjct: 1102 WMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVR 1161
Query: 1102 VTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNV-LQA 1160
F + +EWLC P IDPS+AGLA TYGLNLN L
Sbjct: 1162 PFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSR 1221
Query: 1161 WVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT 1220
W++ + C +ENK+IS+ERI Q++ I EAP +I++ RP WP++G IEL ++ V+Y
Sbjct: 1222 WIL-SFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAEN 1280
Query: 1221 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280
LP VL G++C FPG KKIG+VGRTGSGKSTLIQALFR++EP+ G+I ID +DIS IGL D
Sbjct: 1281 LPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHD 1340
Query: 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340
LRSRL IIPQDP LF+GT+R NLDPLE+HSD +IWE ++K L ++VR LD+PV E
Sbjct: 1341 LRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLE 1400
Query: 1341 DGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVA 1400
+G+NWSVGQRQLV DEATAS+DTATDN+IQ+ IR E CTV T+A
Sbjct: 1401 NGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIA 1460
Query: 1401 HRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
HRIPTVID+DLVLVL +G+V E+D+P +LLED SS F KLV E+ R++
Sbjct: 1461 HRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRST 1509
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2888 (1021.7 bits), Expect = 6.8e-301, P = 6.8e-301
Identities = 597/1325 (45%), Positives = 835/1325 (63%)
Query: 152 EAKAVDFVSLPLLVLLCFNATYACCCARDPSD---LDI---PLLREEDDEFLCKNISTFA 205
E +V FV + LV +C C C + +D+ PLL + + + F+
Sbjct: 152 EMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFS 210
Query: 206 SAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----KQKTD 261
AG+LS+++F W++ L G + +++ +P + +S+T + L +++
Sbjct: 211 KAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRIT 270
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLA 321
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + Y VL
Sbjct: 271 TFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGY--VLV 328
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMI 378
+ F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN++
Sbjct: 329 TTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLM 388
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANR 438
VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 389 AVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFAKL 447
Query: 439 QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTC 498
+E+F S +M++KD R+K TSE L +M++LKL WE +F IE LKK++Y
Sbjct: 448 EEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNS 507
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI Q
Sbjct: 508 SAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQ 567
Query: 559 TKVSLYRIQEFI-KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDK 617
TKVSL RI F+ +D Q+ + S +S++A++I G ++WD ++ PT++ +
Sbjct: 568 TKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDMN- 623
Query: 618 MKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
K+ E+P+ISG +KV G+KAY+ QS WIQ+G + E
Sbjct: 624 FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEE 682
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+Y
Sbjct: 683 NILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQ 742
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDGKI
Sbjct: 743 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKI 802
Query: 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQM-SQITEERFARPI 856
Q+GKY +++ D ++ + + AH ++L ++ + + +++ + +
Sbjct: 803 TQAGKYHEIL-DSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKEKQEN 861
Query: 857 -SCGEFSGRS-QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
S + SG+ Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L +GSNYW+
Sbjct: 862 GSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWM 921
Query: 915 AWAT----DEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSV 970
W T D + VS L RA+L+A K A LF M +
Sbjct: 922 TWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRI 981
Query: 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVF 1030
FRA +SFFD+TP RILNR STDQS D +P + A WQV
Sbjct: 982 FRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVL 1041
Query: 1031 PLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLL 1090
+F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE+++G TTIR F+QE RF
Sbjct: 1042 IVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRG 1101
Query: 1091 RSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAAT 1150
L D YS + FH+ G MEWLC P I+PSLAGLA T
Sbjct: 1102 DIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAIT 1161
Query: 1151 YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210
Y LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PLVI+ +RP WPS G+I +
Sbjct: 1162 YALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITI 1221
Query: 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270
NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTLIQ LFR+VEP+ G I IDG
Sbjct: 1222 CNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDG 1281
Query: 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQD 1330
++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D +IWE ++ C L + VR+
Sbjct: 1282 INILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKK 1341
Query: 1331 QRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREE 1390
+ LD+PV+E+G+NWSVGQRQLVC DEATASIDTATDN+IQ+T+R
Sbjct: 1342 ELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHH 1401
Query: 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT-S 1449
+ CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLED SS FSKLVAE+ + S
Sbjct: 1402 FADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSES 1461
Query: 1450 KSNRN 1454
KS R+
Sbjct: 1462 KSKRS 1466
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2836 (1003.4 bits), Expect = 2.2e-295, P = 2.2e-295
Identities = 578/1281 (45%), Positives = 812/1281 (63%)
Query: 178 ARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
A + + L + EDDE ++ F++AG LS ++F W++ L G + ++ +P
Sbjct: 210 AESSAATSVQLDKAEDDEV----VTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQ 265
Query: 238 IPQSETANDASSLLEESLR----KQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYI 293
+ S+ A + L +++ L + + +VW+ + L+ FA V T++ Y+
Sbjct: 266 VDNSDRAEKLFWIFRSKLEWDDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYV 325
Query: 294 GPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353
P+L+ FV +L+G+ +S+ G+VL + F AK VE +R WYF + GI +RS L
Sbjct: 326 APYLMDTFVQYLNGQRQYSNQ--GVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVL 383
Query: 354 TVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILY 410
+IY++ + + G +SG IIN++ VD ERI F Y+H W+L +Q+ LAL+ILY
Sbjct: 384 VSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILY 443
Query: 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLL 470
++LG + AA +T VM+ N PLA +E+F +ME+KD R+K TSE L +MR+LKL
Sbjct: 444 RSLGLG-SIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQ 502
Query: 471 SWEQEFXXXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG 530
WE +F IE LKK++Y +AI+ + WA+P+ VS FG C+LLK PL SG
Sbjct: 503 GWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESG 562
Query: 531 AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKKPITEPTSKASDV 589
+++ALATFRILQ PIY LP+ ISMI QTKVSL RI F+ +D Q+ + S +S +
Sbjct: 563 KIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKM 622
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPR 649
+++ G ++WD ++ PT+K + KI E+P+
Sbjct: 623 DVEVSNGAFSWD---DSSPIPTLK-DIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPK 678
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
ISG +KV G+KAY+ QS WIQ+G + ENILFGK M++ +Y+ VLE C+LN+D+E++
Sbjct: 679 ISGN-LKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFR 737
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
D +V+GERGINLSGGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL
Sbjct: 738 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 797
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
KTV+Y THQLEFL ADL+LVMKDG+I Q+GKY +++ + ++ + + AH +L V+
Sbjct: 798 NKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEIL-ESGTDFMELVGAHTDALAAVD 856
Query: 830 PPQEDKCLSR-VPCQMSQITEERFARPISCGEFSGRS-QDEDTELGRVKWTVYSAFITLV 887
++ ++ + S+++ + + G+ Q+E+ E G+V +TVY ++ L
Sbjct: 857 SYEKGSASAQSTTSKESKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLA 916
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKRKVSREQLXXXXXXXXXXXXXX 943
Y GALVP+IL+ Q+LFQ L +GSNYW+AW T D K VS L
Sbjct: 917 YGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFC 976
Query: 944 XXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
RA+L A K A LF M +FRA +SFFD+TP RILNR STDQS VD +P
Sbjct: 977 ILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPS 1036
Query: 1004 RLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063
+ + WQV +F+ ++ WY+ YYI+ ARELAR+ G ++
Sbjct: 1037 QFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRS 1096
Query: 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXX 1123
P++ HFSE+++G TTIR F+QE RF L D YS + FH MEWLC
Sbjct: 1097 PLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTV 1156
Query: 1124 XXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183
P I+PS AGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+
Sbjct: 1157 AFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYI 1216
Query: 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243
+IPSE LVI+++RP WP G+I + NL V+Y P LPMVL+G+TCTF G K G+VGR
Sbjct: 1217 DIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGR 1276
Query: 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
TG GKSTLIQ LFR+VEP+ G I IDG++I IGL DLRSRLSIIPQ+P +F+GTVR+NL
Sbjct: 1277 TGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNL 1336
Query: 1304 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXX 1363
DPLE+++D +IWE ++KC L + +R+ + LD+PV+E+G+NWSVGQRQLVC
Sbjct: 1337 DPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRS 1396
Query: 1364 XXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423
DEATAS+DTATD +IQ+T+R+ S CTVIT+AHRI +VID+D+VL+LD+G + E+
Sbjct: 1397 KVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEH 1456
Query: 1424 DSPRQLLEDNSSSFSKLVAEF 1444
DSP +LLED SSSFSKLVAE+
Sbjct: 1457 DSPARLLEDKSSSFSKLVAEY 1477
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1288 (458.5 bits), Expect = 1.3e-244, Sum P(2) = 1.3e-244
Identities = 271/637 (42%), Positives = 381/637 (59%)
Query: 819 KAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCG--EFSGRS-QDEDTELGRV 875
K HR + + P+ + S ++S++ +E + E R ++E+ E+G+V
Sbjct: 905 KVHRTT--SMESPRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQV 962
Query: 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLXXXXXX 935
+ VY + T Y + +++ V +QA M S+YW+A+ T K +VS +
Sbjct: 963 SFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVY 1022
Query: 936 XXXXXXXXXXX--RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTD 993
RA + + +KTAQ F ++ S+ AP+SFFD+TPS RIL+R STD
Sbjct: 1023 VIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTD 1082
Query: 994 QSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILG-ISIWYQAYYITTAR 1052
Q+ VD IP+ + W F++ LG ++IWY+ YY+ ++R
Sbjct: 1083 QTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTV-FFIIPLGWLNIWYRGYYLASSR 1141
Query: 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112
EL R+ KAP++HHFSESIAG TIR F ++ F + ++ + FHN G+ EW
Sbjct: 1142 ELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEW 1201
Query: 1113 LCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENK 1172
L P + I P GL+ +YGL+LN + W I+ C +ENK
Sbjct: 1202 LGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENK 1261
Query: 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1232
M+SVERI QFT+IP+EA IK SRP P WP G I LE++ V+Y P P+VLKG+T
Sbjct: 1262 MVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDI 1321
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
G +KIGVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+DI +GL DLRSR IIPQ+P
Sbjct: 1322 KGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEP 1381
Query: 1293 MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352
+LF+GTVR+N+DP E++SD+EIW+ + +C L ++V LD+ VA++GENWSVGQRQL
Sbjct: 1382 VLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQL 1441
Query: 1353 VCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV 1412
+C DEATAS+D+ TD +IQ+ IRE+ S CT+I++AHRIPTV+D D V
Sbjct: 1442 LCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRV 1501
Query: 1413 LVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
LV+D GK EYDSP +LLE S F+ LV E+ R++
Sbjct: 1502 LVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRSA 1537
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 6.2e-238, Sum P(2) = 6.2e-238
Identities = 259/587 (44%), Positives = 356/587 (60%)
Query: 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVS 925
++E+ E G+V VY + T Y + ++L + +Q M S+YW+A+ T K +S
Sbjct: 930 KEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAIS 989
Query: 926 REQ--LXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPS 983
+ R+ + + +KTAQ F ++ S+ AP+SFFD+TPS
Sbjct: 990 FDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPS 1049
Query: 984 SRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILG-ISIW 1042
RIL+R STDQ+ VD IP+ L W F++ LG ++IW
Sbjct: 1050 GRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPT-AFFVIPLGWLNIW 1108
Query: 1043 YQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102
Y+ YY+ ++REL RM KAPI+HHFSESIAG TIR F ++ F + ++D +
Sbjct: 1109 YRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRM 1168
Query: 1103 TFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWV 1162
FHN G+ EWL P + I P GL+ +YGL+LN + +
Sbjct: 1169 DFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFA 1228
Query: 1163 IWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLP 1222
I+ C VENKM+SVERI QFT+IPSE+ K + P WP G + LE+L V+Y P P
Sbjct: 1229 IYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTP 1288
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+VLKGIT G +K+GVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+DIS +GL DLR
Sbjct: 1289 LVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLR 1348
Query: 1283 SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
SR IIPQ+P+LF+GTVR+N+DP EQ+SD+EIW+ + +C L ++V LD+ V ++G
Sbjct: 1349 SRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNG 1408
Query: 1343 ENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
ENWSVGQRQL+C DEATAS+D+ TD VIQ+ IRE+ + CT+I++AHR
Sbjct: 1409 ENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHR 1468
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
IPTV+D D VLV+D GK E+DSP +LLE S F+ LV E+ R++
Sbjct: 1469 IPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAALVQEYALRSA 1514
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2278 (807.0 bits), Expect = 7.9e-238, Sum P(2) = 7.9e-238
Identities = 501/1262 (39%), Positives = 739/1262 (58%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK- 259
+S FA AG+ S ++F WLN L +RG ++ LE IP + + E A SL EE+L +QK
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKR 263
Query: 260 ----TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH 315
+ S+ +V + VW+ L + FA + +A GP L+ F+ G ++S+
Sbjct: 264 RLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEG---NASFR 320
Query: 316 Y-GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SS 371
Y GLVLA + F+K +ESL+QRQWYF +G+RVRS LT I K+ + + + S
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
I+N VD RIG+F + H++W Q+ +AL IL+ ++G A F+AL I ++
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVA-TFSALAVIILTVLC 439
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSL 491
N P+A Q +F S +M ++D R+KA +E+L +M+VLKL +WE F IE SL
Sbjct: 440 NAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSL 499
Query: 492 KKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551
K + A LFW+SP VS TF C L PL + V + +AT R++Q+P+ +P+
Sbjct: 500 KAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPD 559
Query: 552 LISMIAQTKVSLYRIQEFIKEDNQK--KPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
+I + Q KV+ RI F++ + + + S+ + AI I++ ++W+ E+ K
Sbjct: 560 VIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWE--EKGSTK 617
Query: 610 PTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSW 669
P ++ +++ E P +SG I +G AYV Q++W
Sbjct: 618 PNLRNVS-LEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGT-IDFYGTIAYVSQTAW 675
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
IQTGTIR+NILFG M + Y E ++ +L++D+E+ DGD + +GERG+NLSGGQKQRI
Sbjct: 676 IQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRI 735
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
QLARA+Y ++D+Y+ DDPFSAVDAHT + LF++ +M L+ K VL THQ++FL A D V
Sbjct: 736 QLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSV 795
Query: 790 LVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL--DQV----NPPQEDKCLSRVPCQ 843
L+M DG+I ++ Y++L+A ++ + + AHR++ ++V NP + K ++RV
Sbjct: 796 LLMSDGEITEADTYQELLA-RSRDFQDLVNAHRETAGSERVVAVENPTKPVKEINRVISS 854
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVIL-LCQVL 902
S++ + +R I + E+ E G Y ++ KG + I L QV
Sbjct: 855 QSKVLKP--SRLI---------KQEEREKGDTGLRPYIQYMNQ-NKGYIFFFIASLAQVT 902
Query: 903 FQALQMGSNYWIAWATDEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRL 962
F Q+ N W+A A + +VS +L R+V + + +K++ L
Sbjct: 903 FAVGQILQNSWMA-ANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASL 961
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXX 1022
F ++ S+FRAP+SF+DSTP RIL+R S+D S VD D+P+ L
Sbjct: 962 FSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVL 1021
Query: 1023 XXXXWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1082
WQV + + ++ ++ Q YY TA+EL R+ GT ++ + +H +ES+AGA TIR F
Sbjct: 1022 AIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAF 1081
Query: 1083 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDP 1142
++E RF +S +LID + FH+ EWL P
Sbjct: 1082 DEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSS 1141
Query: 1143 SLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEW 1202
G+A +YGL+LN+ + + N C + N +ISVER+ Q+T++ EAP VI+ +RP W
Sbjct: 1142 GFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNW 1201
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
P +G++E+ +L ++Y P+VLKGI+CTF G KIG+VGRTGSGK+TLI ALFR+VEP
Sbjct: 1202 PVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPV 1261
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCH 1322
GG+I++DGVDIS IG+ DLRSR IIPQDP LF GTVR NLDPL QHSD EIWEV+ KC
Sbjct: 1262 GGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQ 1321
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNV 1382
L E+V++ + LD+ V EDG NWS+GQRQL C DEATASID ATD +
Sbjct: 1322 LKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLI 1381
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442
+Q+TIR E + CTVITVAHRIPTV+D +VL + +G+++EYD P +L++D +S F KLV
Sbjct: 1382 LQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVK 1441
Query: 1443 EF 1444
E+
Sbjct: 1442 EY 1443
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 8.2e-186, Sum P(3) = 8.2e-186
Identities = 206/503 (40%), Positives = 294/503 (58%)
Query: 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXX 1014
+IK ++ M +V +P+SFFD+TP RILNR S DQ T+D I R G
Sbjct: 1093 SIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIA-RTLGMFLNTFC 1151
Query: 1015 XXXXXXXXXXXXWQVFPLFLVILGISIWY-QAYYITTARELARMVGTRKAPILHHFSESI 1073
L +V +G ++ Q YY+ ++REL R+ G ++PI HFSE++
Sbjct: 1152 QVVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETL 1211
Query: 1074 AGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXX 1133
AG TTIR F RF+ + L+D+ + N + WL
Sbjct: 1212 AGVTTIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTV 1271
Query: 1134 XXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI 1193
RS I+ AGL TY L + W++ C++EN ++S+ERI ++ +PSEAPL
Sbjct: 1272 LA-RSRIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCLLPSEAPLFN 1330
Query: 1194 KNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253
S P WPS GKI +NL + Y L VL+GI CT + K+G+VGRTG+GKS+L Q
Sbjct: 1331 DKSVPM-SWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQ 1389
Query: 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1313
ALFR+VEP G I IDG+DI+ +GL LRSR++IIPQDP+LF G+VR NLDP +Q+ D E
Sbjct: 1390 ALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHE 1449
Query: 1314 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATA 1373
IWE I HL + ++ LDA V + G+N+SVGQRQL+ DEA++
Sbjct: 1450 IWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASS 1509
Query: 1374 SIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
SID A+D +IQ+TIR + + CTV+T+AHR+ T+ D+D ++VLD+G+++EYDSP +LL++
Sbjct: 1510 SIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQ 1569
Query: 1434 SSSFSKLVAEFLRRTSKSNRNRD 1456
S + LV + S+S +N D
Sbjct: 1570 DSIYYSLV-----KASESKQNID 1587
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 9.7e-175, Sum P(3) = 9.7e-175
Identities = 215/586 (36%), Positives = 317/586 (54%)
Query: 868 EDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI-AWATDEK----- 921
E + G+VK+++Y ++ + ++V ILL V++ +GSN W+ AW +D K
Sbjct: 953 EFVQTGKVKFSIYLKYLQAIGWCSIV-FILLGFVIYYVAFIGSNLWLSAWTSDSKIYNGT 1011
Query: 922 -RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQR-LFLNMITSVFRAPISFFD 979
S+ L A + + A L ++ ++ RAP+SFFD
Sbjct: 1012 NYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPMSFFD 1071
Query: 980 STPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGI 1039
+TP RI+NR + D TVD +P L +F + ++ LGI
Sbjct: 1072 TTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLAT-PIFVVVIIPLGI 1130
Query: 1040 S-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLID- 1097
+ Q +Y+ T+R+L R+ ++PI HFSE+++G + IR F + RFL +S + ID
Sbjct: 1131 IYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETAIDT 1190
Query: 1098 DYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNV 1157
+ CV F + WL R+ + G + LN+
Sbjct: 1191 NQKCV-FSWITSNRWLAVRLELIGNLIVFFASLMMVIY-RNNLSGDTVGFVLSNALNITQ 1248
Query: 1158 LQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQY 1217
W++ +E +++VERI ++ N+ +EAP V + RP WPS G+I+ N V+Y
Sbjct: 1249 TLNWLVRMTSEIETNIVAVERITEYINVENEAPWVT-DKRPPEGWPSKGEIQFSNYQVRY 1307
Query: 1218 NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277
P L +VLKGITC +KIGVVGRTG+GKS+L LFR++E +GG+I IDGVDI+ IG
Sbjct: 1308 RPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGVDIASIG 1367
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
L DLR +L+IIPQDP+LF G++R NLDP +SD+EIW+ + HL V Q L
Sbjct: 1368 LHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQAGLSYE 1427
Query: 1338 VAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVI 1397
V E G+N S+GQRQL+C DEATA++D TD +IQ TI+ E S CT I
Sbjct: 1428 VTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEFSHCTTI 1487
Query: 1398 TVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
T+AHR+ T++D+D V+VLD GK++EYDSP +LL+ N F + E
Sbjct: 1488 TIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLK-NPGPFYFMAQE 1532
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.3e-173, Sum P(3) = 3.3e-173
Identities = 214/589 (36%), Positives = 326/589 (55%)
Query: 868 EDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI-AWATDEKRK--- 923
E E G+VK+++Y ++ V +L+ +++ + + A +G+N W+ AW +D +++
Sbjct: 953 EFVETGKVKFSIYLKYLQAVGWWSLLFIVIFYVLNYVAF-IGTNLWLSAWTSDSEKQNGT 1011
Query: 924 ---VSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQR-LFLNMITSVFRAPISFFD 979
S+ + + L + A + A + L ++T++ RAP+SFFD
Sbjct: 1012 DNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPMSFFD 1071
Query: 980 STPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVIL-G 1038
+TP+ RI+NR + D STVD +P L P+F++I+
Sbjct: 1072 TTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMAT----PIFIIIIIP 1127
Query: 1039 ISIWY---QAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSL 1095
+SI Y Q +Y+ T+R+L R+ K+PI HFSE+++G IR F + RFL S
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 1096 ID-DYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLN 1154
ID + CV F + WL ++++ G + LN
Sbjct: 1188 IDTNQKCV-FSWITSNRWLAIRLELVGNLIVFCSALLLVIY-KNSLTGDTVGFVLSNALN 1245
Query: 1155 LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLL 1214
+ W++ VE +++VERI ++ N+ +EAP V + +P +WP G+I+ N
Sbjct: 1246 ITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVT-DKKPPADWPKKGEIQFNNYQ 1304
Query: 1215 VQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
V+Y P L +VLKGITC +K+GVVGRTG+GKS+L LFR++E +GG+I+IDG+DI+
Sbjct: 1305 VRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDIA 1364
Query: 1275 MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1334
IGL DLR RL+IIPQDP+LF G +R NLDP ++SD+EIW + HL V Q L
Sbjct: 1365 SIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQLGL 1424
Query: 1335 DAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRC 1394
V E G+N S+GQRQL+C DEATA++D TD++IQ TIR E S+C
Sbjct: 1425 LHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFSQC 1484
Query: 1395 TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
TVIT+AHR+ T++D+D ++VLD GK++EY SP +LL N F + E
Sbjct: 1485 TVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLS-NMGPFYLMAKE 1532
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5F364 | MRP1_CHICK | No assigned EC number | 0.3151 | 0.9231 | 0.8826 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3340 | 0.8408 | 0.8092 | yes | no |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3389 | 0.8388 | 0.8274 | yes | no |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.5010 | 0.9348 | 0.9002 | yes | no |
| O88563 | MRP3_RAT | No assigned EC number | 0.3255 | 0.9156 | 0.8771 | yes | no |
| B2RX12 | MRP3_MOUSE | No assigned EC number | 0.3207 | 0.8758 | 0.8384 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3358 | 0.8285 | 0.9130 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.VIII.1931.1 | multidrug resistance protein ABC transporter family (1361 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1458 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-144 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-119 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-95 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-90 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-88 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-80 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-72 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-70 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-63 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-60 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-59 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-57 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-53 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-52 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-51 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-50 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-48 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-46 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-44 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-43 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-43 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-42 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-42 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-41 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-40 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-40 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-40 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-40 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-40 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-39 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-37 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-36 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-35 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-35 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-34 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-34 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-34 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-34 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-33 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-33 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-32 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-32 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-31 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-31 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-30 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-30 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-30 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-29 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-29 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-29 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-29 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-28 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-27 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-26 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-26 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-25 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-25 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-25 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-25 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-23 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-22 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-21 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-20 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-20 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-19 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-19 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-18 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-18 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-18 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-18 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-17 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-17 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-17 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-17 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-17 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-17 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-16 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-16 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-16 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-15 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-15 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-15 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-15 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-15 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-14 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-13 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-12 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-12 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-11 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-10 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-10 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 9e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-08 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 9e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-07 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-07 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-04 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 8e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.003 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 810 bits (2093), Expect = 0.0
Identities = 446/1291 (34%), Positives = 714/1291 (55%), Gaps = 88/1291 (6%)
Query: 207 AGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETANDA-SSLLEESLRKQKTDA 262
A + S+I F W+ L Q G + + ++ + Q+ET + +E L+K K
Sbjct: 232 ANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKP-- 289
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFV-SFLSGKHDHSSYHYGLVLA 321
L + + +++ L F N ++ ++GP L+ + S +G+ Y Y
Sbjct: 290 -WLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYA---F 345
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMI 378
S+F+ + L + Q++ R+G R+RS L ++++S+ + G +SG I N++
Sbjct: 346 SIFV-GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLM 404
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS-NTPLAN 437
D E + +H +W P ++ +A+V+LY+ LG A +L + +M T + +
Sbjct: 405 TTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLM--LVLMFPIQTFIIS 462
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
+ ++ ++ D RI +E L +M +K +WE F K+ +R+ E +K
Sbjct: 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
+ +F+ + P LV+V++FGV LL LT ++L+ F +L+ P++ LP LI+
Sbjct: 523 SAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAV 582
Query: 558 QTKVSLYRIQE-FIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
VSL R++E + E+ P P + AI I+ G ++WD++ E +PT L++
Sbjct: 583 NANVSLKRLEELLLAEERVLLP--NPPLEPGLPAISIKNGYFSWDSKAE---RPT--LSN 635
Query: 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ + GS VA+ GS G GK+SL+S++LGE+P S A++ + G AYVPQ SWI T+
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATV 695
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
R+NILFG YE ++ AL D+++ GDL+ +GERG+N+SGGQKQR+ +ARAV
Sbjct: 696 RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
YSNSDVYIFDDP SA+DAH G +F +C+ L KT + T+QL FL D ++++ +G
Sbjct: 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
I++ G YE+L N L +++ + +++ E+ S+ P
Sbjct: 816 MIKEEGTYEELSN--NGPLFQKLMENAGKMEEY---VEENGEEEDDQTSSK--------P 862
Query: 856 ISCGEFSGRSQD-----------------EDTELGRVKWTVYSAFITLVYKGAL-----V 893
++ G + +D E+ E G V W V YK AL V
Sbjct: 863 VANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLER-----YKNALGGAWVV 917
Query: 894 PVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQL--IGVFIFLSGGSSFFILGRAVLL 951
++ LC VL + ++ S+ W++ TD+ + L ++ LS G L + L
Sbjct: 918 MILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWL 977
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
++ A+RL M+ S+ RAP+SFF + P RI+NR + D +D ++ +
Sbjct: 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQ 1037
Query: 1012 LIQLLSIIILM----SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILH 1067
+ QLLS +L+ + + W + PL ++ G ++YQ+ TARE+ R+ ++P+
Sbjct: 1038 IFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQS----TAREVKRLDSITRSPVYA 1093
Query: 1068 HFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL 1127
F E++ G +TIR + +R + +D+ T N + WL +R+ L +L
Sbjct: 1094 QFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWL 1153
Query: 1128 VLIILVTLPRSAIDP----SLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183
V A + S GL +Y LN+ L V+ EN + +VER+ +
Sbjct: 1154 TASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213
Query: 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243
++PSEAPLVI+N+RP P WPSSG I+ E+++++Y P LP VL G++ +K+G+VGR
Sbjct: 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGR 1273
Query: 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
TG+GKS+++ ALFR+VE GRILIDG DIS GL DLR L IIPQ P+LF GTVR NL
Sbjct: 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333
Query: 1304 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
DP +H+D ++WE + + HL +++R++ LDA V+E GEN+SVGQRQL+ LAR LL++
Sbjct: 1334 DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393
Query: 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423
+ILVLDEATA++D TD +IQ+TIREE CT++ +AHR+ T+ID D +LVLD G+V+E+
Sbjct: 1394 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453
Query: 1424 DSPRQLLEDNSSSFSKLV-------AEFLRR 1447
D+P LL + S+FSK+V A++LR
Sbjct: 1454 DTPENLLSNEGSAFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 787 bits (2034), Expect = 0.0
Identities = 463/1496 (30%), Positives = 765/1496 (51%), Gaps = 141/1496 (9%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R D GYI M L L++I+ FY +W + +V+ L +
Sbjct: 52 SRHDRGYIQMTHLNK-TKTAL-GFLLWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGI 109
Query: 98 VALCSRYYRTLGEHK--RWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155
L + + L K + +++ +W+V LV L + +L L + +
Sbjct: 110 TMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTF 169
Query: 156 VDFVSLPL--LVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKI 213
+ +L L LVL CF D S PL E + + N +SA LS+I
Sbjct: 170 YIYFALVLSQLVLSCF---------SDKS----PLFSETNHD---PNPCPESSASFLSRI 213
Query: 214 TFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQ--------------- 258
TF W+ + G Q LE + + + +T+ +L E+ +K+
Sbjct: 214 TFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGK 273
Query: 259 ----------KTDATSLPQVII----HAVWK-------------SLALNAAFAGVNTIAS 291
+ DA + +I H K ++ F ++ +
Sbjct: 274 KDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMM 333
Query: 292 YIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351
+IGP +++ + F++ Y +F+ A +++L Q++ G+R+++
Sbjct: 334 FIGPQILSLLIRFVNDPMAPDWQGY-FYTGLLFVCA-CLQTLILHQYFHICFVSGMRIKT 391
Query: 352 ALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVI 408
A+ +Y++++ I + S G I+N+++VD +R D YI+ IW P+QV LAL
Sbjct: 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYF 451
Query: 409 LYKNLGAAPAFAALFSTIFVMVS-NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467
L+ NLG P+ A + + +MV N +A + + + M++KD RIK +E L ++VL
Sbjct: 452 LWLNLG--PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVL 509
Query: 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KT 525
KL +WE FL K+ +R+ E LKK Y + F + +P LV++ITF V + +
Sbjct: 510 KLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENN 569
Query: 526 PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE--PT 583
L + +LA F IL+ P+ LP +IS I Q VSL R++ F+ + + E
Sbjct: 570 ILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI 629
Query: 584 SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI 643
+I + + W AR+ PT+ I +G+ VAV G VG GKSSLLS++
Sbjct: 630 KPGEGNSITVHNATFTW-ARDL---PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSAL 684
Query: 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703
L E+ ++ G + + G AYVPQ +WIQ ++RENILFGK + + +Y++VLE CAL D+
Sbjct: 685 LAEMDKVEGH-VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743
Query: 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
E+ GD + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 764 L--MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVR--- 816
+ G+L KT + TH + +L D+++VM GKI + G Y++L+ + E +R
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYA 863
Query: 817 ----QMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISC----GEFSGR---- 864
Q V+ ++ L ++ + ++ R +S R
Sbjct: 864 PDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS 923
Query: 865 ----------------SQDEDTELGRVKWTVYSAFITLV--YKGALVPVILLCQVLFQAL 906
+ + + G+V+ +VY ++ + + L + +C
Sbjct: 924 SAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCN---HVS 980
Query: 907 QMGSNYWI-AWATD---EKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRL 962
+ SNYW+ W D + + + V+ L F + G ++ ++ I+ ++ L
Sbjct: 981 ALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVL 1040
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIP---YRLAGLAFALIQLLSII 1019
+++ + R+P+SFF+ TPS ++NR S + TVD+ IP G F +I L +I
Sbjct: 1041 HQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100
Query: 1020 ILMSQAAWQVFPLF-LVILGISIWY---QAYYITTARELARMVGTRKAPILHHFSESIAG 1075
+L + P+ ++I + + Y Q +Y+ ++R+L R+ ++P+ HF+E++ G
Sbjct: 1101 LLAT-------PIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLG 1153
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
+ IR F ++ RF+ +S +D+ + + WL +R+ + N L + +
Sbjct: 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN-CIVLFAALFAVI 1212
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
R ++ L GL+ +Y L + W++ +E +++VER+ +++ EAP I+
Sbjct: 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1272
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
+ P WP G++E N ++Y L +VL+ I T G +K+G+VGRTG+GKS+L L
Sbjct: 1273 TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FR+ E + G I+IDG++I+ IGL DLR +++IIPQDP+LF G++R NLDP Q+SD+E+W
Sbjct: 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
+ HL V LD AE GEN SVGQRQLVCLAR LL+K +ILVLDEATA++
Sbjct: 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 1376 DTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
D TDN+IQ TIR + CTV+T+AHR+ T++D V+VLD+G+V E+ +P LL+
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 752 bits (1942), Expect = 0.0
Identities = 423/1269 (33%), Positives = 696/1269 (54%), Gaps = 52/1269 (4%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETAND--ASSLLEES 254
NI A + S+I F W+ L Q G I + ++ + Q+ET EES
Sbjct: 225 NICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES 284
Query: 255 LRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY 314
R + +L + W L F + ++ ++GP ++++ L +
Sbjct: 285 RRPKPWLLRALNNSLGGRFW----LGGIFKIGHDLSQFVGPVILSHL---LQSMQEGDPA 337
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SS 371
G V A + F T L + Q++ R+G R+RS L I+ +S+ + +S
Sbjct: 338 WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFAS 397
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMV- 430
G + NMI D + +H +W P ++ +++V+LY+ LG A F +L +F+++
Sbjct: 398 GKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLI--LFLLIP 455
Query: 431 SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490
T + + + ++ D R+ +E L SM +K +WE+ F ++ +R E
Sbjct: 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSW 515
Query: 491 LKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLP 550
+K + +F+ + P +V++++FGV +LL LT ++L+ F +L+ P+ LP
Sbjct: 516 FRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQ---KKPITEPTSKASDVAIDIEAGEYAWDAREENF 607
L+S + VSL RI+E + + + + P +P + A I I+ G ++WD++
Sbjct: 576 NLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPA----ISIKNGYFSWDSKTS-- 629
Query: 608 KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666
KPT L+D ++I GS VA+ G G GK+SL+S++LGE+ +++ + G AYVPQ
Sbjct: 630 -KPT--LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQ 686
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
SWI T+RENILFG D Y ++ AL D+++ DL+ +GERG+N+SGGQK
Sbjct: 687 VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARAVYSNSD+YIFDDP SA+DAH +F C+ L KT + T+QL FL
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD-QVNPPQEDKCLSRVPCQMS 845
D ++++ +G I++ G + +L ++ L +++ + +D D+ + ++ ++
Sbjct: 807 DRIILVSEGMIKEEGTFAEL--SKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 846 QITEERFARPISCGEFSGRS---QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVL 902
ER G+ GRS + E+ E G + W V + V +V ++L+C +
Sbjct: 865 IDVSERNLGSTKQGK-RGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLT 923
Query: 903 FQALQMGSNYWIAWATDEK--RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960
+ L++ S+ W++ TD+ + S I V+ L G + L + ++ A+
Sbjct: 924 TEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAK 983
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
RL M+ S+ RAP+ FF + P+ R++NR S D +D ++ + L QLLS
Sbjct: 984 RLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043
Query: 1021 LMSQAA----WQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGA 1076
L+ + W + PL ++ ++YQ +T+RE+ R+ ++PI F E++ G
Sbjct: 1044 LIGTVSTISLWAIMPLLILFYAAYLYYQ----STSREVRRLDSVTRSPIYAQFGEALNGL 1099
Query: 1077 TTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV--- 1133
++IR + +R + +D+ T N + WL +R+ L +L V
Sbjct: 1100 SSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRN 1159
Query: 1134 -TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
A S GL +Y LN+ L + V+ EN + SVER+ + ++PSEA +
Sbjct: 1160 GNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI 1219
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I+N+RP WPS G I+ E++ ++Y P LP VL G++ +K+GVVGRTG+GKS+++
Sbjct: 1220 IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
ALFR+VE GRI+ID D++ GL DLR LSIIPQ P+LF GTVR N+DP +H+D
Sbjct: 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
++WE + + H+ +++ ++ LDA V+E GEN+SVGQRQL+ LAR LL++ +ILVLDEAT
Sbjct: 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
AS+D TD++IQ+TIREE CT++ +AHR+ T+ID D +LVL G+VLEYDSP++LL
Sbjct: 1400 ASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
Query: 1433 NSSSFSKLV 1441
++S+F ++V
Sbjct: 1460 DTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 480 bits (1238), Expect = e-144
Identities = 281/879 (31%), Positives = 439/879 (49%), Gaps = 57/879 (6%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G V G+ GSGKS+LL S+L + IS + AYVPQ +WI T+R NI
Sbjct: 683 VPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNI 741
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LF + + + + L D+ G + +GE+G+NLSGGQK R+ LARAVY+N
Sbjct: 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
DVY+ DDP SA+DAH G + ++C +G L+ KT + THQ+ + AD V+ + DG++E
Sbjct: 802 DVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF 861
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQIT----------- 848
SG D + + K + + E + P
Sbjct: 862 SGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE 921
Query: 849 -EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ A + G R E+ G V W+ Y A++ +L + + +
Sbjct: 922 GGDGAALDAAAGRLMTR---EEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVT 978
Query: 908 MGSNYWIA-WATDEKRKVSREQL-IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
+ S W++ W+T + + L + + I L G S + R L + ++ + +
Sbjct: 979 VSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPL--RFFLSYEAMRRGSRNMHRD 1036
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
++ SV R +SFFD+TP RILNR S D +D +P L L + S I++ S +
Sbjct: 1037 LLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096
Query: 1026 AWQVFPLFLVILGISIWYQ--AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
Q F L ++ ++Y+ +Y + RE+ R+ K+P+ E++ G+ TI +
Sbjct: 1097 --QPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYG 1154
Query: 1084 QENRFLLRSHSLID-DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT---LPRSA 1139
+ + + + +D YSC N WL +R+ L N ++ +I V L ++
Sbjct: 1155 KAHLVMQEALRRLDVVYSCSYLENV-ANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATS 1213
Query: 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT-NIPSEA--------- 1189
+ L L+ T + W++ + VE M SVER+L +T +P E
Sbjct: 1214 QEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVD 1273
Query: 1190 --------------PLVIKNSRPSPEWP---SSGKIELENLLVQYNPTLPMVLKGITCTF 1232
+VI+ + P+ P +G + E + ++Y LP+VL+G++
Sbjct: 1274 ALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRI 1333
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
+K+G+VGRTGSGKSTL+ R+VE GG I ++G +I GL++LR + S+IPQDP
Sbjct: 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393
Query: 1293 MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352
+LF GTVR N+DP + S E+W + L E V + +D+ V E G N+SVGQRQL
Sbjct: 1394 VLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453
Query: 1353 VCLARVLLKKKRILVL-DEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1411
+C+AR LLKK +L DEATA+ID A D IQ T+ S TVIT+AHR+ TV D
Sbjct: 1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDK 1513
Query: 1412 VLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSK 1450
++V+D G V E SPR+L+ + S F +V R +K
Sbjct: 1514 IIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAK 1552
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-119
Identities = 133/221 (60%), Positives = 172/221 (77%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G IE +N+ ++Y P LP VLK I+ + +K+G+VGRTGSGKS+L+ ALFR+VE S G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1325
ILIDGVDIS IGL DLRSR+SIIPQDP+LF GT+R+NLDP ++SD+E+W+ + + L E
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
V LD V E GEN SVGQRQL+CLAR LL+K +ILVLDEATAS+D TD +IQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1426
TIRE CTV+T+AHR+ T+ID+D +LVLD+G+V+E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 2e-95
Identities = 109/207 (52%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
Query: 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650
I +E + WD+ E+ T+K + +++ KG VA+ G VGSGKSSLLS++LGE+ ++
Sbjct: 1 ISVEDASFTWDSGEQETS-FTLKDIN-LEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
SG+ + V G AYV Q WIQ GTIRENILFGK + YE+V++ CAL D+E+ DGD
Sbjct: 59 SGS-VSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLS 769
L+ +GE+GINLSGGQKQRI LARAVYS++D+Y+ DDP SAVDAH G H+F+ C++G LL+
Sbjct: 118 LTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGK 796
KT + THQL+ L AD ++V+ +G+
Sbjct: 178 NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 3e-90
Identities = 126/225 (56%), Positives = 162/225 (72%), Gaps = 18/225 (8%)
Query: 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
WP G+IE+ENL V+Y P LP VLK ++ +KIG+VGRTG+GKSTLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1321
G+I IDG+DIS I L+DLRS L+IIPQDP LF GT+R+NLDP +++SD+EI+ +
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
V+E G N S GQRQL+CLAR LLK+ R+LVLDEATASID ATD
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1426
+IQ+TIREE + T++T+AHR+ T+ID D +LV+D G+V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 1e-88
Identities = 150/551 (27%), Positives = 257/551 (46%), Gaps = 10/551 (1%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSGGSSFFIL 945
K L+ + +L +L L + I D +L+ + + L+
Sbjct: 11 LKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRA 70
Query: 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRL 1005
++ L + + K L ++ + R P+SFFD S +++R + D V + L
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 1006 AGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPI 1065
+ +++ L+ ++L+ +W++ + L+IL + + +R+L+R V +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 1066 LHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF 1125
ES++G I+ F E+R L R ++ L + LL +
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 1126 FLVLIILVTLPRSA-IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184
LVL + L S + Y L L + + ++ + ER+ + +
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 1185 IPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
E P P + G IE EN+ Y P VLK I+ + +K+ +VG +
Sbjct: 311 EEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPS 364
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
GSGKSTLI+ L R+ +P+ G ILIDG+DI I L LR R+ I+ QDP+LF GT+R N+
Sbjct: 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA 424
Query: 1305 P-LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
+D+EI E + + E + D V E G N S GQRQ + +AR LL+
Sbjct: 425 LGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484
Query: 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423
IL+LDEAT+++DT T+ +IQ +++ T + +AHR+ T+ + D ++VLD G+++E
Sbjct: 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544
Query: 1424 DSPRQLLEDNS 1434
+ +LL
Sbjct: 545 GTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 2e-80
Identities = 177/610 (29%), Positives = 307/610 (50%), Gaps = 51/610 (8%)
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS--NYWIAWAT------ 918
+ + W Y +IT LV V++ C V+F A S W+
Sbjct: 843 ERENVFETTTWNTYLRYITT--NRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNY 900
Query: 919 -DEKRKVSREQLIGVFIFLSGGSSFFI-------------LG--RAVLLATIAIKTAQRL 962
D++ + + + ++ S+++I LG R + L + ++RL
Sbjct: 901 VDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRL 960
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII-- 1020
M+ SV +AP++ ++ + RILNR + D + +D +P L F IQL I++
Sbjct: 961 HEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL----FDFIQLTLIVLGA 1016
Query: 1021 LMSQAAWQVFPLFLVI--LGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
+ + Q + I I I +AY++ T+++L ++ ++PI H S+ G T
Sbjct: 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWT 1076
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IR F +++ F H ++ ++ F T+ W +RI+++F FF + + + + +
Sbjct: 1077 IRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF--VFFFIAVTFIAIGTN 1134
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP-------- 1190
G+ T +N+ W + + +V+ M SV R+ +F ++P E P
Sbjct: 1135 QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGK 1194
Query: 1191 ------LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
LVI+N WPS G+++++ L +Y VL+ ++ + G +++G++GRT
Sbjct: 1195 YQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRT 1254
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
GSGKSTL+ AL R++ + G I IDGV + + LQ R +IPQ +F GT R NLD
Sbjct: 1255 GSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD 1313
Query: 1305 PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364
P EQ SD+EIW+V + L ++ Q LD + + G S G +QL+CLAR +L K +
Sbjct: 1314 PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373
Query: 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1424
IL+LDE +A +D T +I++T+++ S CTVI HR+ +++ LV++ V +YD
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYD 1433
Query: 1425 SPRQLLEDNS 1434
S ++LL + S
Sbjct: 1434 SIQKLLNETS 1443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 6e-72
Identities = 114/236 (48%), Positives = 159/236 (67%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G+I++ +L V+Y L VLK + +K+G+ GRTGSGKS+L A FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1325
I+IDG+DIS + L LRSRLSII QDP+LF G++R NLDP + +D +WE + L
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
+V+ LDA V E GEN+SVGQRQL CLAR ++K IL++DEATASID AT+N++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+ + TV+T+AHR+ T++D DLVLVL G ++E D+P LL F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 250 bits (642), Expect = 2e-70
Identities = 164/574 (28%), Positives = 261/574 (45%), Gaps = 43/574 (7%)
Query: 883 FITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKV----SREQLIGVFIFL 936
FI L+ Y+ L V+L +L Q L + + + D KV SR L + I L
Sbjct: 145 FIPLLFKYRRLLFEVLLA-SLLLQLLALATPLFSQIVID---KVLPDASRSTLTVLAIGL 200
Query: 937 SGGSSFFILGRAVL--LATIAI-KTAQRLFLNMITSVFRA----PISFFDSTPSSRILNR 989
L A+L L T I +RL L + FR P+S+F+ I++R
Sbjct: 201 L----LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISR 256
Query: 990 CS---TDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAY 1046
+ + I + L FALI L + + + V + + I++ +Q
Sbjct: 257 VRELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316
Query: 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106
R+L +++ E+I G T++ E RF + + + + F
Sbjct: 317 LRRKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 1107 CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDP--SLAGLAATYGLNLNVLQAWVIW 1164
L +LL + L+L L ++ +L L A L + I
Sbjct: 373 EKLALILNTIKSLLQQLSSVLILWFGAIL---VLEGELTLGQLVAFNMLAGYFISP--IT 427
Query: 1165 NLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT 1220
L + +++ER+ + P E + G+IE EN+ +Y P
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRYGPD 484
Query: 1221 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280
P VL+ ++ P +K+ +VGR+GSGKSTL++ L + +P GRIL+DGVD++ I L
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544
Query: 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
LR ++ + QDP LF G++R N+ +D+EI E E + D PV
Sbjct: 545 LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITV 1399
E G N S GQRQ + LAR LL K +IL+LDEAT+++D T+ +I Q + + TVI +
Sbjct: 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIII 664
Query: 1400 AHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
AHR+ T+ D ++VLD+GK++E S +LL
Sbjct: 665 AHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-63
Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 2/229 (0%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G+IE EN+ Y+ P VLK I + + + +VG TG+GK+TLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK-CHLA 1324
ILIDG+DI I + LRS + ++ QD LF GT+ N+ ++ E K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1384
+ + + D + E+G N S G+RQL+ +AR +L+ +IL+LDEAT++IDT T+ +IQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ + + T I +AHR+ T+ + D +LVLD+GK++E + +LL
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 3e-60
Identities = 178/670 (26%), Positives = 311/670 (46%), Gaps = 60/670 (8%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTD 261
S A LSK+ F W + ++G QKLEL I IP ++A++ S LE ++
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS 63
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGV----NTIASYIGPFLITNFVSFLSGKHDHS---SY 314
A P+ +++A+ + F G+ + P L+ ++ + +Y
Sbjct: 64 AKKNPK-LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAY 122
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSS 371
+ L L +F+ V +L FG + +G+++R AL LIYK+++ + S+
Sbjct: 123 YLALGLCLLFI----VRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIST 178
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
G ++++++ ++ + + H +W+ P+QV L L+ L L F L I + +
Sbjct: 179 GQLVSLLSNNLNKFDEGLALAHFVWIAPLQVIL-LMGLIWELLEVNGFCGLGFLILLALF 237
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491
L + + R+ TSE +++++ +K WE+ K + +R+ E
Sbjct: 238 QACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLT 297
Query: 492 KK--YLYTCSAIAFLFWASPTLVSVI---TFGVCILLKTPLTSGAVLSALATFRILQEPI 546
+K YL + AF F + + I+L+ T+ + L Q
Sbjct: 298 RKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQ--- 354
Query: 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEA------GEYAW 600
P I + ++ +IQ+F+ ++ K T+ ++ +++ A GE
Sbjct: 355 --FPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEM-VNVTASWDEGIGELFE 411
Query: 601 DAREENFKKPTIKLTDKM------------------KIMKGSKVAVCGSVGSGKSSLLSS 642
++ N + D + K+ KG +AV GS GSGKSSLL
Sbjct: 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMM 471
Query: 643 ILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702
I+GE+ G IK G+ ++ PQ+SWI GTI++NI+FG + Y V++ C L +D
Sbjct: 472 IMGELEPSEGK-IKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED 530
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
I ++ + D +V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF+ +D T +F+
Sbjct: 531 IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ--------NSEL 814
CL L+S KT + T +LE L AD +L++ +G G + +L A + E
Sbjct: 591 CLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEA 650
Query: 815 VRQMKAHRKS 824
A R++
Sbjct: 651 FDNFSAERRN 660
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-59
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 41/212 (19%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE +N+ Y VLK ++ T +K+ +VG +GSGKSTL++ L R+ +P+ G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
IDGVD+ + L+ LR ++ +PQDP LF GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1387
S GQRQ + +AR LL+ IL+LDEAT+++D T+ +I + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1388 REETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1419
R TVI +AHR+ T+ D D ++VLD+G+
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 4e-57
Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 6/230 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ Y+P P VLK ++ T P KK+ +VG +GSGKST+++ LFR + S G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLA 1324
IDG DI + L LR + ++PQD +LF T+ N+ P +D+E+ E +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1384
+ + + D V E G S G++Q V +AR +LK IL+LDEAT+++DT T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+R+ + T I +AHR+ T+++ D ++VL +G+++E + +LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 4e-56
Identities = 139/554 (25%), Positives = 243/554 (43%), Gaps = 29/554 (5%)
Query: 275 KSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLT 334
K L L ++ + S + P LI + L L+L + L + +L
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG-ELLELLLLLLLLALLGGVLRALQ 72
Query: 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIH 393
+I +R L + + ++ F SG +I+ + DVE + + +
Sbjct: 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLS-FFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
++ + + +LV+L+ +L A L + + + LA + + + EA
Sbjct: 132 LVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLFWASP-TL 511
E+L +RV+K E LK+ E+ R +L+ + S
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 512 VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571
V V+ G ++L LT GA+ + + L PI L E++S++ + + R+ E +
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631
E+ + + +P K + +I+ E +++ ++ K + I G KVA+ G
Sbjct: 311 EEPEVEDPPDPL-KDTIGSIEFENVSFSYPGKKPVLKDISFS------IEPGEKVAIVGP 363
Query: 632 VGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIREN 678
GSGKS+L+ +L SG I + G V Q + +GTIREN
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGE-ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 679 ILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
I G+ D EE L+ ++ I DG ++VGERG+NLSGGQ+QR+ +ARA+
Sbjct: 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
N + I D+ SA+D T + L LL +T L H+L + AD ++V+ +G+I
Sbjct: 483 NPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541
Query: 798 EQSGKYEDLIADQN 811
+ G +E+L+A
Sbjct: 542 VERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-53
Identities = 129/518 (24%), Positives = 234/518 (45%), Gaps = 32/518 (6%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
+IG+ + L G SF LL+ ++ K + + + M + P+SFFD P+ +L+
Sbjct: 60 VIGLAV-LRGICSFV---STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 989 RCSTDQSTV---DTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQA 1045
R + D V TD L +I L +++ S WQ+ + +V+L +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS---WQLTLIVVVMLPVLSILMR 172
Query: 1046 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE----NRFLLRSHSLIDDYSC 1101
R +++ + + E++ G ++ F + RF S+
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 1102 VTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAW 1161
+T L+ + A L +++ + L ++ AG + + L
Sbjct: 233 MT----SAGSISSPITQLIASLA--LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR- 285
Query: 1162 VIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQY 1217
+ +L NV M + E + + P E +R + G +E N+ +Y
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRY 340
Query: 1218 NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277
L I+ + + +VGR+GSGKSTL+ + R EP G+IL+DG D++
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
L LR +++++ QD +LF T+ N+ EQ EI + + + V + LD
Sbjct: 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLD 460
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT 1395
P+ E+G S GQRQ + +AR LLK IL+LDEAT+++D ++ ++Q + T
Sbjct: 461 TPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRT 520
Query: 1396 VITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ +AHR+ T+ D ++V+D+G+++E + +LL N
Sbjct: 521 TLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN 558
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 3e-52
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 1/227 (0%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E +N+ +Y P VL+ I+ P + + +VG +GSGKSTL+ + R + GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEI 1326
IDG D+ L LR ++ ++ QD LF TV N+ + +E+ E + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386
+ + D + E G S GQRQ + +AR LLK IL+LDEAT+++DT ++ ++Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ T +AHR+ T+ + D ++VL++GK++E + +LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-52
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 6/264 (2%)
Query: 1187 SEAPLVIKNSRPSPE--WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
E+P+ S E +I LENL +Y P L + T + +VG +
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTALVGAS 356
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
G+GKSTL+ L + P+ G I ++G+D+ + + R ++S + Q+P LF GT+R N+
Sbjct: 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416
Query: 1305 PLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
SD+EI +++ L E V + L D + E G S GQ Q + LAR LL
Sbjct: 417 LARPDASDEEIIAALDQAGLLEFVPKPDGL-DTVIGEGGAGLSGGQAQRLALARALLSPA 475
Query: 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423
+L+LDE TA +D T+ +I Q ++E + TV+ + HR+ D D ++VLD G+++E
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535
Query: 1424 DSPRQLLEDNSSSFSKLVAEFLRR 1447
+ +L E ++ L+ + R
Sbjct: 536 GTHEELSEKQ-GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 6e-52
Identities = 134/451 (29%), Positives = 209/451 (46%), Gaps = 45/451 (9%)
Query: 1005 LAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAP 1064
L L FAL+ LL I I+ W +IL + Q A E R R A
Sbjct: 267 LIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNA- 325
Query: 1065 ILHHFSESIAGATTIRCFNQENRFL---LRSHSLIDDYSCVTFHNCGTMEWLCLRI--NL 1119
ES++G TI+ N E RF ++ + + L R NL
Sbjct: 326 ---VLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG------------LKSRFLSNL 370
Query: 1120 LFNFAFFL-----VLIILVTLPR-SAIDPSLAGLAATYGLNLNVLQ-----AWVIWNLCN 1168
NFA F+ V I++V + S + ++ GL A L+ L A ++
Sbjct: 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQ 430
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKG 1227
+ + S++ ++Q +P E P P G+IE N+ Y L
Sbjct: 431 AKTALQSLDELMQ---LPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDN 483
Query: 1228 ITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286
++ T PGEK + ++GR GSGKSTL++ L + +P+ G +L+DGVDI I DLR +
Sbjct: 484 VSLTIRPGEK-VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
Query: 1287 IIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345
+PQDP LF GT+R N+ + D+EI + E VR+ LD + E G +
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
Query: 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPT 1405
S GQRQ V LAR LL+ IL+LDE T+++D ++ + ++ + T++ V HR +
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR-TS 661
Query: 1406 VID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
++D D ++V+D G+++ Q+LE
Sbjct: 662 LLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 8e-52
Identities = 96/254 (37%), Positives = 150/254 (59%), Gaps = 7/254 (2%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G++ +++L +Y VL+ I+ + +++G++GRTGSGKSTL+ A R++ + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1325
I IDGV + + LQ R +IPQ +F GT R NLDP + SD+EIW+V + L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
++ Q LD + + G S G +QL+CLAR +L K +IL+LDE +A +D T VI++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS------SSFSK 1439
T+++ + CTVI HRI +++ LV++E KV +YDS ++LL + S S +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239
Query: 1440 LVAEFLRRTSKSNR 1453
L R +SKS R
Sbjct: 240 LKLFPRRNSSKSKR 253
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 5e-51
Identities = 149/528 (28%), Positives = 251/528 (47%), Gaps = 56/528 (10%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
L ++ L ++ +++L A+ Q+L +++ + R P+S FD+ P ++++
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLIS 126
Query: 989 RCSTDQSTVD----TDIP--YRLAGLAFA-LIQLLSIIILMSQAAWQVFPLFLVILGISI 1041
R + D + T + R A L A L+ + S+ M+ A +FP LV++ I
Sbjct: 127 RVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI-- 184
Query: 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE----NRFLLRSHSLID 1097
YQ Y + + R V A I F+E I G + I+ F Q+ R S S
Sbjct: 185 -YQRY----STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRS--- 236
Query: 1098 DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNV 1157
H M+ L L LL +IL L L G +A+ + + V
Sbjct: 237 -------HYMARMQTLRLDGFLLRPLLSLFSALILCGLLM------LFGFSASGTIEVGV 283
Query: 1158 LQAWVIWNLCNVENKMISV--------------ERILQFTNIPSEAPLVIKNSRPSPEWP 1203
L A++ + L + +I + ER+ + + P + + RP
Sbjct: 284 LYAFISY-LGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ--YGNDDRPL---- 336
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
SG+I+++N+ Y VL+ I + P + +VG TGSGKSTL L +
Sbjct: 337 QSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G I +DG +S + LR ++++ QDP++ T N+ S++++W+ + L
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL 455
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
AE+ R L P+ E G N SVGQ+QL+ LARVL++ +IL+LDEATA+ID+ T+ I
Sbjct: 456 AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
QQ + T++ +AHR+ T+++ D +LVL G+ +E + +QLL
Sbjct: 516 QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 1e-50
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 7/219 (3%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
G+IE N+ Y L ++ T GEK + ++GR GSGKSTL++ L + +P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEK-VAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKC 1321
+L+DG DI + DLR + +PQD LF GT+R N+ PL D+ I
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELA 117
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
+ + V + LD + E G S GQRQ V LAR LL IL+LDE T+++D ++
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
+++ +R+ T+I + HR + D ++V+D G++
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-48
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 1/189 (0%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+KI KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GTI+E
Sbjct: 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK-IKHSGRISFSSQFSWIMPGTIKE 116
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NI+FG + Y+ V++ C L +DI + + D +V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 NIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236
Query: 798 EQSGKYEDL 806
G + +L
Sbjct: 237 YFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-46
Identities = 84/241 (34%), Positives = 143/241 (59%), Gaps = 13/241 (5%)
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IE +N+ +Y P+ P +LKG++ T P K + +VG +G GKST++ L R +P+ G
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-----DPLEQHSDQEIWEVINK 1320
IL+DGVDI + L+ LRS++ ++ Q+P+LF GT+ N+ D +D+E+ E K
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAAKK 115
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
++ + + D V E G S GQ+Q + +AR LL+ +IL+LDEAT+++D ++
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
++Q+ + T I +AHR+ T+ + DL+ VL G+V+E + +L+ ++KL
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKL 234
Query: 1441 V 1441
V
Sbjct: 235 V 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 24/199 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------------------- 658
++I G + G VG GKSSLL +ILGE+ + G KVH
Sbjct: 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG---KVHWSNKNESEPSFEATRSRNR 78
Query: 659 GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
AY Q W+ T+ ENI FG + Y+ V + C+L DI++ GD + +GERG
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYT 776
INLSGGQ+QRI +ARA+Y N+++ DDPFSA+D H HL ++ ++ L ++T++
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 777 THQLEFLDAADLVLVMKDG 795
TH+L++L AD ++ MKDG
Sbjct: 199 THKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 3e-43
Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 2/228 (0%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G + N+ Y+P P +L GI+ T P K + +VG +G+GKST+++ LFR + +
Sbjct: 259 RLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1322
G I IDG DI + Q LR + I+PQD +LF T+ N+ + +E+
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ 377
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
+ + ++ D V E G S G++Q V +AR +LK IL+LDEAT+++DT T+
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
IQ +RE ++ T + +AHR+ T+ID D ++VLD G+++E + +LL
Sbjct: 438 IQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 7/231 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I E++ +Y P P++L I+ PGE +G+VGR+GSGKSTL + + R P GR+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEV-VGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA-- 1324
L+DG D+++ LR ++ ++ Q+ +LF ++R N+ + E VI LA
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME--RVIEAAKLAGA 117
Query: 1325 -EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+ + + D V E G S GQRQ + +AR L+ RIL+ DEAT+++D +++ I
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+ + + + TVI +AHR+ TV + D ++V+++G+++E S +LL +N
Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 7e-42
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 10/263 (3%)
Query: 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITCTF- 1232
S R+ +I + P V + P + ++G+ +EL N+ Y LK T
Sbjct: 309 SARRL---NDILDQKPEV---TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLA 362
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GEK + ++GR+GSGKSTL+Q L +P G I ++GV+I+ + Q LR +S++ Q
Sbjct: 363 QGEK-VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421
Query: 1293 MLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
LF GT+R NL SD+E+W + + L +++ L+ + E G S G+R+
Sbjct: 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1411
+ LAR LL + +LDE T +D T+ + + E T++ V HR+ + D
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541
Query: 1412 VLVLDEGKVLEYDSPRQLLEDNS 1434
++VLD GK++E + +LL +N
Sbjct: 542 IIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 9e-42
Identities = 132/528 (25%), Positives = 227/528 (42%), Gaps = 60/528 (11%)
Query: 316 YGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSG 372
GL+LA++F R + +G R+ L+ ++ + + F S G
Sbjct: 198 IGLLLAALFEALLR----LLRTYLI--AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVG 251
Query: 373 IIINMINVDVERIGDFFL--YIHRIWLLPVQVFLALVILYKN---LGAAPAFAALFSTIF 427
II+ + ++E+I +F + I L + V+ + A L I
Sbjct: 252 EIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL-LRLREI 486
++ L + + ++E + ET+K + +K L+ E F + RL +
Sbjct: 311 LIFQP-LLRRKTRK----LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365
Query: 487 ERDSLKK-YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ-- 543
K L + V ++ FG ++L+ LT G +++ F +L
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVA----FNMLAGY 421
Query: 544 --EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
PI L +L + Q KV+L R+ + + E + + + GE ++
Sbjct: 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPP------EQEGDKTLIHLPKLQGEIEFE 475
Query: 602 A---REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
R P ++ +I G KVA+ G GSGKS+LL +LG G I +
Sbjct: 476 NVSFRYGPDDPPVLEDLSL-EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-ILLD 533
Query: 659 GKK-------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQD 702
G YV Q ++ +G+IRENI G ++ EE++E ++
Sbjct: 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEF 591
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
IE G + VGE G NLSGGQ+QR+ LARA+ S + + D+ SA+D T + Q
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQ 650
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
L+ +L +TV+ H+L + +AD ++V+ GKI + G +E+L+A
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 9e-41
Identities = 143/590 (24%), Positives = 249/590 (42%), Gaps = 79/590 (13%)
Query: 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQR 336
AL A +G+ IA L + G+ S ++L + + L +R
Sbjct: 5 SALLAVLSGIAIIAQAA--LLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRER 62
Query: 337 QWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRI 395
Y A ++ +R + + K A A +G + +E++ ++ Y
Sbjct: 63 LGYRAAAKVRASLRQLVLDKLAKLGPA-FIAQKPAGSAATLALEGIEQLEPYYARY---- 117
Query: 396 WLLPVQVFLALVILYKNLGAAPA--FAALF----STIFVMVSNTPLANRQERFHSMI--- 446
LP Q+FL+ ++ P A+F + +++ PL MI
Sbjct: 118 --LP-QMFLSAIV--------PLLILIAIFFFNWAAALILLITAPLI-----PLFMILVG 161
Query: 447 MEAKDARIKATS----------ETLKSMRVLKLL----SWEQEFLKKLLRLREIERDSLK 492
+ AKDA K S + L+ + L+ + E+ K R+ L+
Sbjct: 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLR 221
Query: 493 KYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ----EPIYN 548
+ + + F + S LV+V G +L + LT A L L IL +P+ +
Sbjct: 222 IAFLSSAVLEFFAYLSIALVAV-YIGFRLLGEGDLTLFAGLFVL----ILAPEFFQPLRD 276
Query: 549 LPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK 608
L A + + ++ ++ E A++ I+I ++ +
Sbjct: 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD---G 333
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------- 661
KP + + + I G A+ G+ G+GKS+LL+ +LG + G I+V+G
Sbjct: 334 KPALSDLN-LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE-IRVNGIDLRDLSPE 391
Query: 662 ------AYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
++V Q+ ++ GTIRENIL + D L+ L + + DG +V+
Sbjct: 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-KPDGLDTVI 450
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GE G LSGGQ QR+ LARA+ S + + + D+P + +DA T + Q L L QKTVL
Sbjct: 451 GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVL 509
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVRQMKAHR 822
TH+LE AD ++V+ +G++ + G +E+L Q L++Q + R
Sbjct: 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 77/219 (35%), Positives = 130/219 (59%), Gaps = 6/219 (2%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +N+ Y PT P +VL+ ++ T PGE +VG +GSGKST++ L +P
Sbjct: 10 GIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVT-ALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKC 1321
GG++L+DG IS + L S++S++ Q+P+LF +++ N+ L+ S + + E K
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
H + + D V E G S GQ+Q V +AR L++ ++L+LDEAT+++D ++
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
+QQ + + R TV+ +AHR+ TV D +LVLD G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 2e-40
Identities = 137/517 (26%), Positives = 240/517 (46%), Gaps = 45/517 (8%)
Query: 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCS 991
V L GGS + + R L R+ ++ S+ R + FFD + + +R S
Sbjct: 216 VSAGLRGGSFNYTMARINL----------RIREDLFRSLLRQDLGFFDENKTGELTSRLS 265
Query: 992 TDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIW----YQAYY 1047
+D T+ + + L L+ LL ++ M + ++ + L+ L + + Y
Sbjct: 266 SDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325
Query: 1048 ITTARELARMVG--TRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105
+ EL V + A E+++G T+R F E R +++ +
Sbjct: 326 QLLSEELQEAVAKANQVA------EEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379
Query: 1106 NCGTMEWLCLRINLLFNFAFFLVLII---LVTLPRSAIDPSLAGLAATYGLNLNVLQAWV 1162
++L LVL LV + + ++ L L V
Sbjct: 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSY 439
Query: 1163 IWNLCNVENKMISV---ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP 1219
+++ M +V E++ ++ + PL +P G IE +++ Y P
Sbjct: 440 VYS-----GMMQAVGASEKVFEYLDRKPNIPL---TGTLAPLN-LEGLIEFQDVSFSY-P 489
Query: 1220 TLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276
P VLKG+T T PGE + +VG +GSGKST+ L + +P+GG++L+DGV +
Sbjct: 490 NRPDVPVLKGLTFTLHPGEV-VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY 548
Query: 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
L +++++ Q+P+LF G+VR N+ L D+EI + + + + D
Sbjct: 549 DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD 608
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT 1395
V E G S GQ+Q + +AR L++K R+L+LDEAT+++D + ++Q++ R SR T
Sbjct: 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-RSRASR-T 666
Query: 1396 VITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
V+ +AHR+ TV D +LVL +G V+E + +QL+ED
Sbjct: 667 VLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-40
Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 27/267 (10%)
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228
+E + ++ +L+ P + P SG +EL N+ Y+P P +++
Sbjct: 439 LEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENF 498
Query: 1229 TCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
+ T +++ +VG +GSGKST L+ L++ P G IL DG+ I + L + +
Sbjct: 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSV 555
Query: 1286 SIIPQDPMLFQGTVRTNL---DP-------LEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
+++ QD LF+GTVR NL DP + D I +VI R D
Sbjct: 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITS-------RPGG--YD 606
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT 1395
A +AE G N S GQRQ + +AR L++ IL+LDEAT+++D T+ +I +R CT
Sbjct: 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRG--CT 664
Query: 1396 VITVAHRIPTVIDNDLVLVLDEGKVLE 1422
I VAHR+ T+ D D ++VL+ GKV++
Sbjct: 665 CIIVAHRLSTIRDCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-40
Identities = 137/519 (26%), Positives = 237/519 (45%), Gaps = 44/519 (8%)
Query: 935 FLSGGSSF---FILGRAVLLATIAIKTAQRLFL----------NMITSVFRAPI----SF 977
F S + V+ +A+ TA R +L ++ +VF I SF
Sbjct: 49 FSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108
Query: 978 FDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII---ILMSQAAWQVFPLFL 1034
FD S +++R +TD + + + I + L+ AL L I I+M + ++ L L
Sbjct: 109 FDKNRSGEVVSRLTTDTTLLQSVIG---SSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165
Query: 1035 VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094
+ + + + + R+L+R R A + E++ T++ F E+ R
Sbjct: 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225
Query: 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSL-AGLAATYGL 1153
++ T L ++ F ++ +L I + AG +
Sbjct: 226 AVEKAYEAARQRIRTRALL---TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVF 282
Query: 1154 NLNVLQAWVIWNLCNVENKMI----SVERILQFTNIPSE--APLVIKNSRPSPEWPSSGK 1207
V+ A I L V ++ + ER+++ + AP K + P G+
Sbjct: 283 -YAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK----TLPVPLRGE 337
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IE E + Y P P L G+ T PGE + +VG +G+GKSTL Q L R +P G
Sbjct: 338 IEFEQVNFAY-PARPDQPALDGLNLTVRPGET-VALVGPSGAGKSTLFQLLLRFYDPQSG 395
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHL 1323
RIL+DGVD+ + +LR+R++++PQDP+LF +V N+ +D+E+ H
Sbjct: 396 RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHA 455
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
E + D + E G S GQRQ + +AR +LK IL+LDEAT+++D ++ ++
Sbjct: 456 HEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
QQ + T + +AHR+ TV+ D ++V+D+G+++
Sbjct: 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-40
Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFP 1233
I++ER+ N P+E + P G I EN+ +Y P P VL +
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPE----LRGAITFENIRFRYAPDSPEVLSNLNLDIK 481
Query: 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293
+ IG+VG +GSGKSTL + L R+ P G++L+DGVD+++ LR ++ ++ Q+ +
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 1294 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLA---EIVRQDQRLLDAPVAEDGENWSVGQR 1350
LF ++R N+ + E VI+ LA + + + + + V E G N S GQR
Sbjct: 542 LFSRSIRDNIALCNPGAPFE--HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599
Query: 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDND 1410
Q + +AR L+ RIL+ DEAT+++D ++ +I + +RE TVI +AHR+ TV D
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659
Query: 1411 LVLVLDEGKVLEYDSPRQLL 1430
++VL++G++ E +LL
Sbjct: 660 RIIVLEKGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-39
Identities = 111/429 (25%), Positives = 182/429 (42%), Gaps = 57/429 (13%)
Query: 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITTARELARMVGTRKAPIL 1066
A +S +IL+ A + P+F++++G W QA L+R+ G
Sbjct: 137 AAVFPQDWISGLILLLTAP--LIPIFMILIG---WAAQAAARKQWAALSRLSG------- 184
Query: 1067 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126
HF + + G T++ F + ++Y TM LRI L +
Sbjct: 185 -HFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEY------RERTMR--VLRIAFLSSA--- 232
Query: 1127 LVLIILVTLPRSAIDPSLAGLAATYGLNL-----NVLQAWVIWNLC--------NV---- 1169
VL + TL S+A +A G L ++ + L +
Sbjct: 233 -VLELFATL-------SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQY 284
Query: 1170 ENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGIT 1229
+ V + AP + P P+ +E + V Y P L+ ++
Sbjct: 285 HARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS-LEFSGVSVAYPGRRP-ALRPVS 342
Query: 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289
T P +++ +VG +G+GKSTL+ L V+P+ G I ++GV ++ R +++ +P
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
Query: 1290 QDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346
Q P LF GT+ N+ P SD EI E + + L E V + LD P+ E G S
Sbjct: 403 QHPFLFAGTIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLS 460
Query: 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1406
GQ Q + LAR L+ +L+LDE TA +D T+ + + +R TV+ V HR+
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALA 520
Query: 1407 IDNDLVLVL 1415
D ++VL
Sbjct: 521 ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-37
Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 12/318 (3%)
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
SL + + A+ + F ++ + + P L+ FV FL D++++ GL L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDA--DNATWGRGLGLVLT 290
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGP--SSGIIINMI 378
+ ++S+ ++Y+ + R G++ RSAL LI+++ I A P ++G IINM+
Sbjct: 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMM 350
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG--AAPAFAALFSTIFVMVSNTPLA 436
+ DVERI F Y +W P+ + L++++L + +G A A A L T+ + N +
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL---NGAIM 407
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
Q I +A DAR+KAT+E +R+ K ++WE F+ + R E L+
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
A +F+ A+PTL+ + F V LL LT V +A +L+ P + +P + + +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 557 AQTKVSLYRIQEFIKEDN 574
Q VS+ RI F++ DN
Sbjct: 528 LQFLVSIKRISTFLECDN 545
|
Length = 1560 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-36
Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G +E +++ Y+ + V + ++ PG+ + +VG TG+GKSTLI L RV +P
Sbjct: 332 KGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQT-VAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1322
GRILIDG DI + LR ++++ QD LF ++ N+ +D+E+ +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1323 LAE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
+ I R+ D V E G S G+RQ + +AR LLK IL+LDEAT+++D T+
Sbjct: 450 AHDFIERKPDG-YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEA 508
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
++ + E T +AHR+ TV + D +LV D G+V+E S SF +LV
Sbjct: 509 KVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE-----------SGSFDELV 557
Query: 1442 A 1442
A
Sbjct: 558 A 558
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+EN+ +Y P VL+ ++ + + + ++G +GSGKSTL + + ++ P+ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
+DG DIS +L + +PQD LF G++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1387
S GQRQ + LAR L RILVLDE + +D + + Q I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1388 REETSR-CTVITVAHRIPTVIDNDLVLVLDEGKV 1420
+ T I +AHR T+ D +LVL++G+V
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 7e-35
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
Query: 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK--IELENLLVQYNPTLPMVLKGITCT 1231
+ ERI++ + S P+ GK +EL +L Y P P VL G++
Sbjct: 302 AAAERIVEVLDAAGPVAEG---SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLD 357
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
P +++ ++G +GSGKSTL+ L +++P G + +DGV +S + ++R R+S+ QD
Sbjct: 358 LPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD 417
Query: 1292 PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350
LF TVR NL +D+E+W + + LA+ +R LD + E G S G+R
Sbjct: 418 AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGER 477
Query: 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
Q + LAR LL IL+LDE T +D T + + + + S TV+ + H
Sbjct: 478 QRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-34
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
SG IE++ + +Y P P++L ++ PGE + +VG +GSGKSTL++ L P
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF-VAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G + DG D++ + +Q +R +L ++ Q+ L G++ N+ + E WE L
Sbjct: 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGL 567
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
AE +R + ++E G S GQRQ + +AR L++K RIL+ DEAT +A DN
Sbjct: 568 AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SALDNRT 623
Query: 1384 QQTIREETSR--CTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
Q + E R T I +AHR+ T+ + D + VLD G+V++ + +L+ L
Sbjct: 624 QAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG-----LF 678
Query: 1442 AEFLRR 1447
A+ RR
Sbjct: 679 AQLARR 684
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-34
Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 2/230 (0%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G IE N+ Y L+ I P K + +VGR+GSGKST+ L R + G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHL 1323
IL+DG D+ L LR++++++ Q+ LF T+ N+ EQ+S ++I E +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+ + + LD + E+G S GQRQ + +AR LL+ IL+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
Q + E T + +AHR+ T+ D +LV+++G+++E + +LL N
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-34
Identities = 132/526 (25%), Positives = 227/526 (43%), Gaps = 49/526 (9%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
LI +I + LL + + + + L+ I +F P+SFF + + I++
Sbjct: 202 LIIAYII----QQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA-AWQVFPLFLVILGISIWYQAYY 1047
R + S +D LA +L + I++++ Q LFL+ L Y
Sbjct: 258 RFTDASSIIDA-----LASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVII 312
Query: 1048 ITTARELARM---VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTF 1104
I R ++ A + E + G TI+ E + S DY +F
Sbjct: 313 ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSF 372
Query: 1105 HNCGT---MEWLCLRINLLFN-----FAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLN 1156
+ + L+ N +LV+ +TL + L A L
Sbjct: 373 KYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQ------LITFNALLSYFLT 426
Query: 1157 VLQAWVIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L+ N+ N++ K+ ++ R+ + + SE I + + +G I + +
Sbjct: 427 PLE-----NIINLQPKLQAARVANNRLNEVYLVDSE---FINKKKRTELNNLNGDIVIND 478
Query: 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272
+ Y +L I+ T K +VG +GSGKSTL + L + G IL++G
Sbjct: 479 VSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHLAEI---V 1327
+ I LR ++ +PQ+P +F G++ NL E S EIW C +AEI +
Sbjct: 538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA---CEIAEIKDDI 594
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1387
++E+G + S GQ+Q + LAR LL ++L+LDE+T+++DT T+ I +
Sbjct: 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
Query: 1388 REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ T+I VAHR+ +D ++VLD GK++E S +LL+ N
Sbjct: 655 LNLQDK-TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 6e-34
Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 10/249 (4%)
Query: 1177 ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEK 1236
E ++ F P P + IE E+L + +P + + T P +
Sbjct: 322 ESLVTFLETPLAHP---QQGEKELASNDPVTIEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296
+I +VG +G+GK++L+ AL + P G + I+G+++ + + R LS + Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1297 GTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353
GT+R N+ +P SD+++ + + ++E + + LD P+ + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVL 1413
LAR LL+ ++L+LDE TAS+D ++ ++ Q + + R T + V H++ + D +
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1414 VLDEGKVLE 1422
V+ +G++++
Sbjct: 555 VMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 20/209 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
I G KVA+ G GSGKS++L + G I I G I+ + VP
Sbjct: 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDSLRRAIGVVP 81
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLS 722
Q + + TI NI +G+ + EEV+E ++ I + DG ++VGERG+ LS
Sbjct: 82 QDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GG+KQR+ +ARA+ N + + D+ SA+D HT + L + +T + H+L
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLST 198
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ AD ++V+KDG+I + G +E+L+A
Sbjct: 199 IVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-33
Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 8/258 (3%)
Query: 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPG 1234
S RI + T + P V + + + L N+ Y VLKG++
Sbjct: 310 SARRINEITE---QKPEVTFPTTSTAA-ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294
+K+ ++GRTG GKSTL+Q L R +P G IL++G I+ LR +S++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1295 FQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353
F T+R NL SD+ + EV+ + L +++ D+ L+A + E G S G+++ +
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGEQRRL 484
Query: 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN-DLV 1412
+AR LL +L+LDE T +D T+ I + + E TV+ + HR+ T ++ D +
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL-TGLEQFDRI 543
Query: 1413 LVLDEGKVLEYDSPRQLL 1430
V+D G+++E + ++LL
Sbjct: 544 CVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-33
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 56/192 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G KVA+ G GSGKS+LL +L GEI I G ++ + AYV
Sbjct: 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYV 81
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
PQ ++ +GTIRENIL SGG
Sbjct: 82 PQDPFLFSGTIRENIL-----------------------------------------SGG 100
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
Q+QRI +ARA+ + + I D+ SA+D T L + L L KTV+ H+L +
Sbjct: 101 QRQRIAIARALLRDPPILILDEATSALDPET-EALILEALRALAKGKTVIVIAHRLSTIR 159
Query: 785 AADLVLVMKDGK 796
AD ++V+ DG+
Sbjct: 160 DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-32
Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Query: 1200 PEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
PE P+ G +E ++ ++ + ++ + + +VG TG+GK+TLI L RV
Sbjct: 326 PELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEV 1317
+P+ G+ILIDG+DI+ + + LR ++ + QD LF ++R N+ E +D+E++E
Sbjct: 385 YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEA 444
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ + + D V E G S G+RQ + +AR +LK ILVLDEAT+++D
Sbjct: 445 AKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504
Query: 1378 ATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437
T+ ++ I T +AHR+ TV + DLVL LD+G+++E S ++L++ + F
Sbjct: 505 ETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRF 563
Query: 1438 SKLV 1441
KL+
Sbjct: 564 YKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-32
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWI-QT- 672
+ G ++A+ G G+GK+SLL+++LG +P +I+G ++ +++ SW+ Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNP 432
Query: 673 ----GTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
GT+R+N+L G D ++ LE +++ + + G + +G++ LS GQ Q
Sbjct: 433 QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD 787
R+ LARA+ + + D+P +++DAH+ L Q L ++T L THQLE L D
Sbjct: 493 RLALARALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823
+ VM+DG+I Q G Y +L L + AHR+
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGG--LFATLLAHRQ 585
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 9e-32
Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 21/217 (9%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK---- 656
KKP +K + I G VA+ G G+GK++L++ ++ G+I I G I+
Sbjct: 15 KKPVLKDIN-FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISR 72
Query: 657 --VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDL 711
+ V Q +++ +GTI ENI G+ EEV+E + I +G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDFIMKLPNGYD 130
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+V+GE G NLS G++Q + +ARA+ + + I D+ S +D T L ++ L L+ +
Sbjct: 131 TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-LIQEALEKLMKGR 189
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
T + H+L + AD +LV+ DGKI + G +++L+A
Sbjct: 190 TSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 17/236 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE ENL +Y LK ++ +++ ++G GSGKSTL++ L +++P+ G +L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1268 IDGVDISMI-GLQDLRSRLSIIPQDP--MLFQGTVRTNLD---PLEQHSDQEIWEVINKC 1321
+DG+D S L +LR ++ ++ Q+P LF TV + +EI E + +
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE- 121
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
E+V + LLD P N S GQ+Q V +A VL IL+LDE TA +D
Sbjct: 122 -ALELVGL-EELLDRPPF----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 1382 VIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+ + +++ E T+I V H + V++ D V+VLD+GK+L P ++ D
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-31
Identities = 136/515 (26%), Positives = 225/515 (43%), Gaps = 63/515 (12%)
Query: 317 GLVLASVF-LFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG--PSSGI 373
G+ LA VF KT+ S YF + G + L+ +++R + ++ S G
Sbjct: 192 GVALAIVFDFVLKTLRS------YF-LDVAGKKADLILSAKLFERVLGLRMEARPASVGS 244
Query: 374 IINMINVDVERIGDFF--LYIHRIWLLPVQVFLALVILY---KNLGAAPAFAALFSTIFV 428
N + + E + DFF + + LP L L+++ L P A +
Sbjct: 245 FANQLR-EFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLVAIPLILLPG 302
Query: 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIE 487
++ PL+ E M R E+L + +K L+ E F ++ + + +
Sbjct: 303 LLLQRPLSRLAEE----SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALA 358
Query: 488 RDSLKKYLYTCSAIAFLFWASPTLVSV--ITFGVCILLKTPLTSGAVLSA--LATFRILQ 543
R LK + A F + LVSV + GV ++ LT G +++ L+ R L
Sbjct: 359 RSGLKSRFLSNLATNFAQFIQ-QLVSVAIVVVGVYLISDGELTMGGLIACVMLSG-RALA 416
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
P+ L L++ Q K +L + E ++ P+ P + GE + R
Sbjct: 417 -PLGQLAGLLTRYQQAKTALQSLDELMQ-----LPVERPEGTRF-LHRPRLQGEI--EFR 467
Query: 604 EENF-----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
+F + P + + I G KVA+ G +GSGKS+LL +LG G+ + +
Sbjct: 468 NVSFAYPGQETPALD-NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLD 525
Query: 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL---EGCALNQD 702
G YVPQ + GT+R+NI G + EE+L E + +
Sbjct: 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG--APYADDEEILRAAELAGVTEF 583
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
+ DG +GERG +LSGGQ+Q + LARA+ + + + D+P SA+D + FK
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER-FKD 642
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
L L+ KT++ TH+ LD D ++VM +G+I
Sbjct: 643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 125/621 (20%), Positives = 235/621 (37%), Gaps = 117/621 (18%)
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG--------KHDHSSY 314
LP + ++ K L + T+ + IG LSG +
Sbjct: 3 ALLPYLRLYKRHKFGLLLGIVLAILTLLASIGLL-------TLSGWFISASAIAGLAYIF 55
Query: 315 HYGLVLASVFLFAKT------VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG 368
+ L A V A VE L F RV SAL V ++++ + A
Sbjct: 56 NVMLPSAGVRGLAILRTAARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPAL 108
Query: 369 PS---SGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPA---FAAL 422
SG ++N + DV+ + + +L + ++ + + + I A L
Sbjct: 109 LLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168
Query: 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKS--------MRVLKLLSWEQ 474
+ ++ P R A + L+S L + E
Sbjct: 169 LLLLLII----PTLFY--RAG----RKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAED 218
Query: 475 EFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI------LLKTPL 527
+ L + K+ +T + A L + LV + + L +
Sbjct: 219 AYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGA 278
Query: 528 TSG--AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK 585
+ +AL F L P + Q S R+ + + QK +T P +
Sbjct: 279 ALALLVIFAALEAFEPL------APGAFQHLGQVIASARRLNDILD---QKPEVTFPDEQ 329
Query: 586 ASDVAIDIEAGEYAWDAREENFKKPTIK---LTD-KMKIMKGSKVAVCGSVGSGKSSLLS 641
+ +E R +F P + L + + + +G KVA+ G GSGKS+LL
Sbjct: 330 TATTGQALEL-------RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382
Query: 642 SILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIRENILFGK----- 683
+ G G+ I ++G + + + Q + +GT+R+N+
Sbjct: 383 LLAGAWDPQQGS-ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD 441
Query: 684 -DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742
++ L+ L + +E DG + +GE G LSGG+++R+ LARA+ ++ ++
Sbjct: 442 EELW-----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 743 IFDDPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ D+P +D T ++ ++ LL + KT+L TH+L L+ D ++V+ +GKI
Sbjct: 497 LLDEPTEGLDPIT-----ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKII 551
Query: 799 QSGKYEDLIADQNSELVRQMK 819
+ G + +L+A+ +++
Sbjct: 552 EEGTHAELLANN--GRYKRLY 570
|
Length = 573 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ NL +Y L G++ + G++G G+GK+TL++ L +++P+ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1323
+ G D+ +R R+ +PQ+P L+ TVR NL+ L S +E E I L
Sbjct: 64 VLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE--EL 120
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
E+ + + + V S G +Q + +A LL +L+LDE T+ +D + I
Sbjct: 121 LELFGLEDK-ANKKV----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 1384 QQTIREETSR--CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1431
+ +RE T++ H + + D V++L++GK++ +P +L E
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PS 1262
IEL +L V Y LK I+ P + ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1263 GGRILIDGVDISMIGLQD--LRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVIN 1319
G +L+DG DI + + LR R+ ++ Q P F G++ N+ L H +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLH------GIKL 112
Query: 1320 KCHLAEIVRQDQRL--LDAPVAE--DGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
K L E V + R L V + S GQ+Q +CLAR L + +L+LDE T+++
Sbjct: 113 KEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 1376 DTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
D + I++ I E T++ V H R+ D L G+++E+ Q+
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 22/208 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG-------------KKA 662
I G VA+ G GSGKS+L++ I PR + I + G +
Sbjct: 24 DIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 663 YVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q ++ T+ ENI +G+ + EE ++ I +G +V+GERG+ L
Sbjct: 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ + + I D+ SA+D + L + L L+ +T H+L
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAALERLMKNRTTFVIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIAD 809
++ AD ++V++DGKI + G +E+L+A
Sbjct: 199 TIENADRIVVLEDGKIVERGTHEELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 8e-30
Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 20/195 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIK------VHGKKAYVPQ 666
I G KVA+ G VGSGKS+LL + G P + G I+ + YVPQ
Sbjct: 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85
Query: 667 SSWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
+ GT+R+NI G D R E + + +G +GERG LS
Sbjct: 86 DVTLFYGTLRDNITLGAPLADDER---ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLS 142
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+Q + LARA+ ++ + + D+P SA+D ++ L ++ L LL KT++ TH+
Sbjct: 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSL 201
Query: 783 LDAADLVLVMKDGKI 797
LD D ++VM G+I
Sbjct: 202 LDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 22/222 (9%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
EL+NL Y L I+ T + + +VG GSGKSTL++ L ++ P+ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRT-------NLDPLEQHSDQEIWEVIN 1319
DG D++ + L++LR ++ ++ Q+P F TV NL ++EI E +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL----GLPEEEIEERVE 116
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
+ E+V + L D S GQ+Q V +A VL IL+LDE TA +D A
Sbjct: 117 EA--LELVG-LEGLRDRSPFT----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 1380 DNVIQQTIRE-ETSRCTVITVAHRIPTVIDN-DLVLVLDEGK 1419
+ + +++ + T+I V H + +++ D V+VL++GK
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 22/242 (9%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+IE + V Y+ +LK I+ F G +VG +G+GKSTLI+ + R+++P+ G I
Sbjct: 3 EIEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PL---EQHSDQEIWEVINKC 1321
LIDGVDI I + DLR ++ ++ Q P LF+GTV+ N++ P+ E++ D E +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY------ 114
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
IV ++ V +N S G+ Q V +AR L +L+LDE T+++D +
Sbjct: 115 --LSIVGLNKEYATRDV----KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1382 VIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
+I++ I + ++ TVI + H + D L++G ++EY + + +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228
Query: 1439 KL 1440
KL
Sbjct: 229 KL 230
|
Length = 241 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-29
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G VA+ GS G GKS+++S + GEI + G I+ + + V
Sbjct: 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRWLRSQIGLV 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + GTI ENI +GK EEV E N I DG ++VGERG L
Sbjct: 83 SQEPVLFDGTIAENIRYGKPDATD--EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQKQRI +ARA+ N + + D+ SA+DA + L ++ L + +T + H+L
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQEALDRAMKGRTTIVIAHRLS 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ ADL+ V+++G++ + G +++L+A
Sbjct: 200 TIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 8e-29
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 39/215 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ + N+ Y VLK ++ +KI ++GR+GSGKSTL+Q L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
+DGV +S + L S +S++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1387
G +S G+RQ + LAR+LL+ I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1388 REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
E T+I + H + + D +L L+ GK++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y +L ++ + P + G++G GSGKSTL++ L +++P G +L
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVR--------TNLDPLEQHSDQEIWEVI 1318
+DG DI+ + ++L +L+ +PQ P G TV +L + S ++ V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L + R +D S G+RQ V +AR L ++ IL+LDE T+ +D A
Sbjct: 121 EALELLGLEHLADRPVDE--------LSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN------DLVLVLDEGKVLEYDSPRQLL 1430
+ + +R+ TV+ V H + N D +++L +GK++ +P ++L
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 16/184 (8%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G +VA+ G G+GKS+LL+ +LG + G+ I V+G A+VPQ +
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 670 IQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ GTI ENI + D + E LE L++ + G + +GE G LSGGQ QR
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADL 788
+ LARA ++ + + D+P + +DA T + + L L +TVL TH+L AD
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLALAALADR 525
Query: 789 VLVM 792
++V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKAY------VP 665
I G KV + G GSGKSSLL ++ G I I G I G +P
Sbjct: 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLHDLRSRISIIP 84
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + +GTIR N+ D + +E LE L + +E G +VV E G NL
Sbjct: 85 QDPVLFSGTIRSNL----DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
S GQ+Q + LARA+ S + + D+ ++VD T L ++ + TVL H+L+
Sbjct: 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREAFKDCTVLTIAHRLD 199
Query: 782 FLDAADLVLVMKDGKI 797
+ +D +LV+ G++
Sbjct: 200 TIIDSDRILVLDKGRV 215
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IEL L + VLKG+ + + ++G +GSGKSTL++ + ++ P G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1268 IDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIWEVIN 1319
IDG DI S L LR R+ ++ Q LF TV N+ PL +H S++EI E++
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1320 KCHLAEI-VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+ L + +R + L A S G ++ V LAR L +L+ DE TA +D
Sbjct: 119 EK-LEAVGLRGAEDLYPA-------ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
VI IR + T I V H + T D + VL +GK++ +P +L
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-26
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%)
Query: 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257
P+P+ G + +E L +LKGI+ + +G++G +GSGKSTL + L
Sbjct: 329 PAPQ----GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
Query: 1258 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
+ P+ G + +DG D+ + L + +PQD LF GT+ N+ + +D E +V
Sbjct: 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE--KV 442
Query: 1318 INKCHLAE----IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
I LA I+R Q D + E G S GQRQ + LAR L ++VLDE +
Sbjct: 443 IEAARLAGVHELILRLPQGY-DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 1374 SIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1430
++D+ + + I +R TV+ +AHR P+ + + D +LVL +G++ + ++L
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHR-PSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-26
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 58/213 (27%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ENL +Y L ++ T + + +VG GSGKSTL++A+ +++P+ G ILI
Sbjct: 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1328
DG DI+ + L++LR R+ + Q
Sbjct: 59 DGKDIAKLPLEELRRRIG------YVPQ-------------------------------- 80
Query: 1329 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
L S GQRQ V LAR LL +L+LDE T+ +D A+ + + +R
Sbjct: 81 -----L-----------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1389 EETSR-CTVITVAHRIPTVID-NDLVLVLDEGK 1419
E TVI V H D V+VL +GK
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 22/232 (9%)
Query: 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IELEN+ + T L ++ P + G++G +G+GKSTL++ + + P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1265 RILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLE--QHSDQEIWEV 1317
+ +DG D+ S L+ LR ++ +I Q L TV N+ PLE EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ L E+V + P S GQ+Q V +AR L +IL+ DEAT+++D
Sbjct: 122 VA--ELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1378 ATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1425
T I + +++ T++ + H + V+ D V VLD+G+++E +
Sbjct: 175 ETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-26
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 26/262 (9%)
Query: 565 RIQEFIKEDNQKKPITEPTSKASDV--AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK 622
R+ E ++ + K P + + I+ E +A+ AR + + LT +
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLT----VRP 365
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSSW 669
G VA+ G G+GKS+L +L G I + G ++ + + A VPQ
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-LLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMWADGDLSVVGERGINLSGGQK 726
+ ++ ENI +G+ + EEV I +G + +GERG+ LSGGQ+
Sbjct: 425 LFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QRI +ARA+ ++ + + D+ SA+DA + L +Q L L+ +T L H+L + A
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++VM G+I G + +LIA
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 28/235 (11%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+E++NL V + L ++ + GE +G+VG +GSGKSTL +A+ +++P+ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGET-LGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1265 RILIDGVDISMIG---LQDLRSRLSIIPQDPM-----LFQGTVRTNL-DPLEQH----SD 1311
I+ DG D+ + + R + ++ QDPM T+ + +PL H
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM--TIGEQIAEPLRIHGKLSKK 118
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
+ E + L V + +L+ E S GQRQ V +AR L ++L+ DE
Sbjct: 119 EARKEAVLL--LLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 1372 TASIDTATDNVIQQTIREETSR--CTVITVAHRIPTV-IDNDLVLVLDEGKVLEY 1423
T+++D + I +++ T++ + H + V D V V+ GK++E
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 67/238 (28%), Positives = 123/238 (51%), Gaps = 26/238 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I++EN+ Y + LK ++ + + ++G GSGKST+ + L +++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVR---------TNLDPLEQHSDQEIWE 1316
IDG+ IS L+++R ++ II Q+P F G TV + P +++ +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP------KKMKD 121
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
+I+ LA+ V + L P +N S GQ+Q V +A VL I++ DE+T+ +D
Sbjct: 122 IID--DLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
I++ + + +T + T+I++ H + I D V+V EGK++ P+++L +
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-25
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 9/249 (3%)
Query: 1187 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1246
+EAP+V S P PE + + Y T L+ + T + +G+ G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNIRQF--TYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 1247 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--- 1303
GKSTL+ + R + S G I + ++ + L RSRL+++ Q P LF TV N+
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 1304 DPLEQHSDQEIWEVINKCHLAE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362
P + QEI V + + I+R Q D V E G S GQ+Q + +AR LL
Sbjct: 413 RP--DATQQEIEHVARLASVHDDILRLPQGY-DTEVGERGVMLSGGQKQRISIARALLLN 469
Query: 1363 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
IL+LD+A +++D T++ I +R+ TVI AHR+ + + +LV+ G + +
Sbjct: 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529
Query: 1423 YDSPRQLLE 1431
+ QL +
Sbjct: 530 RGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-25
Identities = 108/453 (23%), Positives = 194/453 (42%), Gaps = 74/453 (16%)
Query: 395 IWLLPVQVFLALVILYKN-------LGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIM 447
+W+L V + L ++ +N L + P +A +++ N+ + M
Sbjct: 280 MWIL---VIVGLFLVRQNMLLFLLSLLSIPVYAV------IIILFKRTFNKL---NHDAM 327
Query: 448 EAKDARIKATSETLKSMRVLKLLSWEQE-----------FLKKLLRLREIER-DSLKKYL 495
+A + E L + +K L+ E E +L K + ++ ++ K +
Sbjct: 328 QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387
Query: 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
+ W LV ++ LT G +++ A P+ N+ L
Sbjct: 388 TKLILNVVILWTGAYLV----------MRGKLTLGQLITFNALLSYFLTPLENIINLQPK 437
Query: 556 IAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI 612
+ +V+ R+ E E KK TE + D+ I+ + Y + +
Sbjct: 438 LQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--------- 488
Query: 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKA-- 662
L+D + I SK + G GSGKS+L ++ GEI ++G ++K +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLR 547
Query: 663 ----YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ---DIEMWADGDLSVVG 715
Y+PQ +I +G+I EN+L G +E+ C + + DIE G + +
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
E G ++SGGQKQRI LARA+ ++S V I D+ S +D T + L L KT+++
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIF 664
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
H+L +D ++V+ GKI + G +++L+
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-25
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEI--PRISGAAIKVH---GKKAYVPQSSWI 670
G + +CG GSGKS+LLS I G+I I +++ + A V Q+ ++
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 671 QTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ T+ NI G+ D Q E V +++ DI G + VGERG+ LSGGQKQRI
Sbjct: 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N+++ I DD SAVD T H L +TV+ + H+L L A +
Sbjct: 461 SIARALLLNAEILILDDALSAVDGRT-EHQILHNLRQWGEGRTVIISAHRLSALTEASEI 519
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELVR--QMKAHRKSLDQVNPPQE 833
LVM+ G I Q G ++ L ++ R Q++A +LD +E
Sbjct: 520 LVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEA---ALDDAPEIRE 564
|
Length = 569 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-25
Identities = 105/416 (25%), Positives = 180/416 (43%), Gaps = 44/416 (10%)
Query: 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKAT---SETLKSMRVLKLLSWEQE 475
AL + V+V L NR + + EA +A I+A L++ V++ +
Sbjct: 145 ILALGGAV-VLVGLALLNNRATK--KPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201
Query: 476 FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVL 533
K+ R + ++ L ++ V+ G + + +T G ++
Sbjct: 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMI 261
Query: 534 -SALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP---ITEPTSKASDV 589
++ R L PI + + + R+ E + + P + EP S
Sbjct: 262 AGSILVGRALA-PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVE 320
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP- 648
+ I KKPT++ + G +A+ G GSGKS+L I+G P
Sbjct: 321 NVTI---------VPPGGKKPTLRGIS-FSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 649 -----RISGAAIK-----VHGKK-AYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEG 696
R+ GA +K GK Y+PQ + GT+ ENI FG++ E+++E
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADP---EKIIEA 427
Query: 697 CALNQDIEMWA---DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
L E+ DG +V+G G LSGGQ+QRI LARA+Y + + + D+P S +D
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 754 HTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
G + L ++ TV+ TH+ L D +LV++DG+I + G+ ++++A
Sbjct: 488 -EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-25
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 13/253 (5%)
Query: 1182 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241
N PS P + P PE G + +EN+ + L+GI+ + + + ++
Sbjct: 298 LANYPSRDPAM---PLPEPE----GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAII 350
Query: 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRT 1301
G +GSGKSTL + + + P+ G + +DG D+ + + +PQD LF GTV
Sbjct: 351 GPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410
Query: 1302 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL---LDAPVAEDGENWSVGQRQLVCLARV 1358
N+ +++D E ++I LA + RL D + G S GQRQ + LAR
Sbjct: 411 NIARFGENADPE--KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468
Query: 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDNDLVLVLDE 1417
L +++VLDE +++D + + I+ +R TV+ + HR + D +LVL +
Sbjct: 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528
Query: 1418 GKVLEYDSPRQLL 1430
G++ + ++L
Sbjct: 529 GRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVP 665
++ G + G G+GK++LL + G + SG I V G YVP
Sbjct: 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRRIGYVP 84
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLS 722
Q S T+REN+ F + EE + IE + G ++ LS
Sbjct: 85 QEPSLYPELTVRENLEFFARLYGLSKEEA------EERIEELLELFGLEDKANKKVRTLS 138
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GG KQR+ +A A+ + ++ I D+P S +D + + L L + T+L +TH L
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGGVTILLSTHIL 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
E + D V+++ DGKI G E+L + V +++ R L
Sbjct: 198 EEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I++ENL Y P L + + +G++G TGSGKSTLIQ L +++P+ G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1265 RILIDGVDIS--MIGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSDQE 1313
+I+IDGVDI+ + L D+R ++ ++ Q P LF+ T+ NL S++E
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG----LSEEE 118
Query: 1314 IWEVINKCHLAEIVRQD-QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
I + + IV D + D E S GQ++ V +A V+ + +IL+LDE T
Sbjct: 119 IENRVKRA--MNIVGLDYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPT 172
Query: 1373 ASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428
A +D + I I+E + T+I V+H + V D ++V+++GK +PR+
Sbjct: 173 AGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664
++I G V + G GSGKS+L I +G + V G + V
Sbjct: 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVGVV 81
Query: 665 PQSSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + + +IR+NI G M + L G + I +G ++VGE+G L
Sbjct: 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGA--HDFISELPEGYDTIVGEQGAGL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ N + IFD+ SA+D + H + + + + +TV+ H+L
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD ++VM+ G+I + G +++L+A
Sbjct: 199 TVKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 4e-23
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 46/216 (21%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ NL +Y L I+ T + G++G G+GK+TLI+ + +++P G I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
+ G DI ++++ R+ +P++P L++ TVR NL
Sbjct: 59 VLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386
S G +Q + LA+ LL +L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1387 IREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1420
+RE T++ +H + D V +L+ G++
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-23
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK 661
KKP +K + G + + G GSGKS+L ++G P R+ GA ++ ++
Sbjct: 348 KKPILKGIS-FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 662 A------YVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWA---DGDL 711
Y+PQ + GTI ENI FG++ E+V+E L E+ G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAARLAGVHELILRLPQGYD 463
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ +GE G LSGGQ+QRI LARA+Y + + + D+P S +D+ G ++ ++
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARG 522
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
TV+ H+ L + D +LV++DG+I G E+++A
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQ 1290
GE +G+VG +GSGKSTL + L ++ PS G I+ DG D+ + G L+ LR R+ ++ Q
Sbjct: 316 EGET-LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 1291 DP---MLFQGTVRTNL-DPLEQHSD---QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
DP + + TV L +PL H E + + E+V LD E
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL--ELVGLPPEFLDRYPHEL-- 430
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAH 1401
S GQRQ V +AR L + ++L+LDE +++D + + +++ T + ++H
Sbjct: 431 --SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Query: 1402 RIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+ V D V V+ +G+++E ++ E+ +++
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-23
Identities = 103/472 (21%), Positives = 188/472 (39%), Gaps = 49/472 (10%)
Query: 366 FAGPSSGIIINMINVDVERIG----DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421
F +G +++ I D E++ D F+ + R L + L +V+LY +
Sbjct: 105 FDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETL--TVIGLFIVLLYYSWQLTLIVVV 162
Query: 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL 481
+ + +++ ++ R R I + ETL+ RV+KL + ++
Sbjct: 163 MLPVLSILMRR--VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFD 220
Query: 482 RLREIERDSLKKYLYTCSAIAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATF 539
+ R K S + + AS L V+ + LT+G + +
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAM 280
Query: 540 RILQEPIYNLPELISMIAQTKVSLYRIQEFIKE----DNQKKPITEPTSKASDVAIDIEA 595
L P+ +L + + + + + + + D + I +
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFR- 339
Query: 596 GEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISG 652
Y R P + + I G VA+ G GSGKS+L++ I PR
Sbjct: 340 --YPGRDR------PALDSIS-LVIEPGETVALVGRSGSGKSTLVNLI----PRFYEPDS 386
Query: 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA- 698
I + G + A V Q + TI NI +G Q+ E+ A
Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYG-RTEQADRAEIERALAA 445
Query: 699 --LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
++ G + +GE G+ LSGGQ+QR+ +ARA+ ++ + I D+ SA+D +
Sbjct: 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ + L L+ +T L H+L ++ AD ++VM DG+I + G + +L+A
Sbjct: 506 RLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 1208 IELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I +E+ ++ LK I P + + +VG GSGKS+L+ AL +E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
+ + G ++ + Q+P + GT+R N+ + ++ +VI C L
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106
Query: 1325 EIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT- 1379
D +L + E G N S GQ+Q + LAR + I +LD+ +++D
Sbjct: 107 ---EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 1380 DNVIQQTIREETSRC-TVITVAHRIPTVIDNDLVLVLDEGK 1419
++ + I T I V H++ + D ++VLD G+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-22
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 45/180 (25%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G VA+ G GSGKS+LL +I G + SG +
Sbjct: 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL----------------------- 57
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ GKD+ + EE+ V + LSGGQ+QR+ LARA+ N
Sbjct: 58 -IDGKDIAKLPLEELRRRI--------------GYVPQ----LSGGQRQRVALARALLLN 98
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLD-AADLVLVMKDGK 796
D+ + D+P S +D + + L L + +TV+ TH E + AAD V+V+KDGK
Sbjct: 99 PDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-22
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 48/219 (21%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+N+ +Y VL ++ + + ++G +GSGKSTL++ + + EP G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1268 IDGVDISMIG--LQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHL 1323
IDG D++ + L LR R+ ++ QD LF TV N+ L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL----------------- 101
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
S GQ+Q V LAR L +L+LDE T+++D T +
Sbjct: 102 ----------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 1384 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1419
+ ++ TV+ V H + D V+VL +GK
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 3e-22
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 52/221 (23%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ENL V Y VL ++ + + +G++G G+GKSTL++ L +++PS G IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1328
DG D++ + ++L +++ +PQ L L L +D+ E+
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--AL----ELLGLAHL---ADRPFNEL----------- 98
Query: 1329 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
S G+RQ V LAR L ++ IL+LDE T+ +D A + + +R
Sbjct: 99 -----------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1389 EET--SRCTVITVAHRIPTVIDN------DLVLVLDEGKVL 1421
TV+ V H + N D V++L +G+++
Sbjct: 142 RLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-22
Identities = 85/310 (27%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 532 VLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTS---KASD 588
V +ALA F L P+ + Q S RI E QK +T PT+ A
Sbjct: 284 VFAALAAFEALM-PV---AGAFQHLGQVIASARRINEIT---EQKPEVTFPTTSTAAADQ 336
Query: 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL---- 644
V++ + + + + + K + L I G KVA+ G G GKS+LL +
Sbjct: 337 VSLTLNNVSFTYPDQPQPVLK-GLSLQ----IKAGEKVALLGRTGCGKSTLLQLLTRAWD 391
Query: 645 ---GEIPRISGAAIKVHGKKA------YVPQSSWIQTGTIRENILFGKD----------M 685
GEI ++G I + + A V Q + + T+R+N+L +
Sbjct: 392 PQQGEI-LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL 450
Query: 686 RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745
+Q E++LE ++ + W +GE G LSGG+++R+ +ARA+ ++ + + D
Sbjct: 451 QQVGLEKLLED---DKGLNAW-------LGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500
Query: 746 DPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+P +DA T ++ ++ LL++ KTVL TH+L L+ D + VM +G+I + G
Sbjct: 501 EPTEGLDAET-----ERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555
Query: 802 KYEDLIADQN 811
+++L+A Q
Sbjct: 556 THQELLAQQG 565
|
Length = 574 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IEL+N+ + T V LK ++ + P + G++GR+G+GKSTLI+ + + P+ G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1266 ILIDGVDISMI---GLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVI 1318
+L+DG D++++ L+ R R+ +I Q L TV N+ PLE EI E +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L E+V + + P S GQ+Q V +AR L ++L+ DEAT+++D
Sbjct: 122 L--ELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
T I +R+ T++ + H + V D V V+++G+V+E + ++
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-22
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Query: 1249 STLIQALFRVVEPSGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLDP- 1305
STL++ + +++P+ G IL+DG D + + LR R+ ++ QDP LF + TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1306 -LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364
++ +D E + + L + + ++ S GQ+Q V +AR LLKK +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 1365 ILVLDEATA 1373
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSSWI 670
++ G +A+ G G+GKS+LL +ILG + SG+ I+V GK YVPQ I
Sbjct: 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79
Query: 671 QTG---TIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
++R+ +L + + ++ +V E AL LS + +R I
Sbjct: 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE--AL-------ERVGLSELADRQI 130
Query: 720 -NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGGQ+QR+ LARA+ + D+ + D+PF+ VD T ++ + LL + T+
Sbjct: 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLRELRREGMTI 185
Query: 774 LYTTHQLE-FLDAADLVLVMKDGKI 797
L TH L L+ D VL++ +
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++LENL +Y L G++ T G++G G+GK+TL++ L + PS G I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPL-------EQHSDQEIWEVIN 1319
IDG D+ + Q LR R+ +PQ+ ++ TVR LD + + + EV+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
+L + R +++ + S G R+ V +A+ L+ IL++DE TA +D
Sbjct: 117 LVNLGD--RAKKKI---------GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1380 DNVIQQTIREETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVL 1421
+ + E VI H + V + V VL++GK++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL V Y VL+ I+ + + ++G G+GKSTL++A+ +++PS G I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVR-----------TNLDPLEQHSDQE 1313
I G + + R R+ +PQ + F TV+ L + ++
Sbjct: 63 IFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1314 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
+ E + + + + L D + E S GQ+Q V LAR L + +L+LDE
Sbjct: 120 VDEALERVGMED-------LRDRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1374 SIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1431
+D A I ++E TV+ V H + V+ D V+ L ++ P ++L
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227
Query: 1432 D 1432
+
Sbjct: 228 E 228
|
Length = 254 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 1e-21
Identities = 57/158 (36%), Positives = 99/158 (62%), Gaps = 7/158 (4%)
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G+IL+DGVDI L+DLR+ SI+ Q+PMLF ++ N+ ++ + +E +V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE--DVKRACKF 1334
Query: 1324 A---EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
A E + D V G++ S GQ+Q + +AR LL++ +IL+LDEAT+S+D+ ++
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1381 NVIQQTIREETSRC--TVITVAHRIPTVIDNDLVLVLD 1416
+I++TI + + T+IT+AHRI ++ +D ++V +
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 29/249 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+N+ + VLK + + + ++G +G GKSTL++ + + EP+ G IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLE--QHSDQEI-WEVINKCH 1322
IDG D++ + + R ++++ Q+ L+ TV N+ L+ EI V
Sbjct: 62 IDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK---E 116
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
+A+++ + LL+ + S GQRQ V LAR L++K ++ +LDE +++D +
Sbjct: 117 VAKLLGLEH-LLNRKPLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 1383 IQQTIRE--ETSRCTVITVAHRIPTVIDNDL----VLVLDEGKVLEYDSPRQLLEDNSSS 1436
++ I++ E T I V H ++ ++V+++G++ + +P +L E ++
Sbjct: 172 MRSEIKKLHERLGTTTIYVTHD---QVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228
Query: 1437 FSKLVAEFL 1445
F VA F+
Sbjct: 229 F---VAGFI 234
|
Length = 338 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-21
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 28/232 (12%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IEL+N+ Y LK + GE + +VG +GSGKSTL+ L + +P+ G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEF-VAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1265 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVI 1318
+LI+G D++ + ++L R ++ + Q+ L TV N++ PL
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L E++ + RLL +E S GQ+Q V +AR L+ +I++ DE T ++D+
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDL------VLVLDEGKVLE 1422
T + + +RE + T+I V H D +L V+ L +GK+ E
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTH------DPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 24/249 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ +Y V + + + ++G +GSGK+T ++ + R++EP+ G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN--LDP-LEQHSDQEIWEVINKCHL 1323
IDG DI +LR ++ + Q LF TV N L P L + ++I
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI--------- 110
Query: 1324 AEIVRQDQRLLDAPVAEDGENW----SVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
E + L+ AE + + S GQ+Q V +AR L +L++DE ++D T
Sbjct: 111 RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
Query: 1380 DNVIQQTIR--EETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1436
+ +Q+ + ++ T++ V H I D + ++ G++++ +P ++L ++
Sbjct: 171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230
Query: 1437 FSKLVAEFL 1445
F VAEF+
Sbjct: 231 F---VAEFV 236
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 6e-21
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 605 ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--- 661
+ +P + + I KG V + G GSGKS+LL + G + SG + V GK
Sbjct: 10 PDGARPALDDIS-LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTK 67
Query: 662 ----------AYVPQ--SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
V Q T+ E + FG + EE+ E + E
Sbjct: 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV 122
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
L + +R LSGGQKQR+ +A + + D+ + D+P + +D L + LL
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE-----LL 177
Query: 769 SQ-----KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ KT++ TH L+ L AD V+V++DGK
Sbjct: 178 KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 9e-21
Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
I KG + G GSGKS+LL + G + SG + + GK AYV
Sbjct: 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYV 81
Query: 665 PQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIE--MWADGDLSVVG-----E 716
PQS G T+ E +L G+ + + +D E A L ++G +
Sbjct: 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSK-----EDEEIVEEA---LELLGLEHLAD 133
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R ++ LSGG++QR+ +ARA+ + + + D+P S +D H + ++ LL
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA---HQIE--VLELLRDLNREK 188
Query: 771 -KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
TV+ H L AD ++++KDGKI G E+++ ++N
Sbjct: 189 GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 50/204 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQS 667
+ + KG A+ G G+GKS+LL +ILG + SG IK+ GK YVPQ
Sbjct: 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGYVPQK 83
Query: 668 SWIQTG---TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGE 716
S + T+++ +L G+ ++ ++ E+V E AL + + M + +
Sbjct: 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE--ALER-VGMED------LRD 134
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R I LSGGQKQR+ LARA+ N D+ + D+PF+ VD ++ + LL +
Sbjct: 135 RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG-----QKEIYDLLKELRQEG 189
Query: 771 KTVLYTTHQLEFLDAADLVLVMKD 794
KTVL TH DL LVM
Sbjct: 190 KTVLMVTH--------DLGLVMAY 205
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 28/229 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+ L Y L ++ T + + ++G +G GK+TL++ + + P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL--------DPLEQHSDQEIWEVI 1318
IDG D++ G+ R + ++ QD LF TV N+ P + +
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE--- 113
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L E+V + LL+ E S GQ+Q V LAR L ++ +L+LDE +++D
Sbjct: 114 ----LLELVGLE-GLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424
+++ ++E T I V H + D + V++EG++++
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK-AYVPQSS-- 668
+ + KG VA+ G G GKS+LL I G E P + G + G YV Q
Sbjct: 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------ 720
W+ T+ +N+ G ++R E E A L +VG G
Sbjct: 84 LPWL---TVLDNVALGLELRGKSKAEARE----------RAKELLELVGLAGFEDKYPHQ 130
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGG +QR+ +ARA+ + + + D+PF A+DA T L + L+ L +KTVL TH
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTH 189
Query: 779 QLE---FLDAADLVLVMKDG 795
++ +L AD V+V+ +
Sbjct: 190 DVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-20
Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 35/250 (14%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP--- 1261
+E+ENL V++ ++ ++ PGE +G+VG +GSGKSTL AL ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEI-LGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1262 -SGGRILIDGVDISMIGLQDLRS----RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
+ G +++DG D+ + +++R R+++I QDPM T+L+P+ DQ I E
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPVMTIGDQ-IRE 116
Query: 1317 VI---NKCHLAEIVRQDQRLLDA---PVAEDGENW----SVGQRQLVCLARVLLKKKRIL 1366
+ K AE ++ LL+ P E + + S G RQ V +A L K ++L
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176
Query: 1367 VLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLE 1422
+ DE T ++D T I +++ V+ + H V+ D V+V+ +G+++E
Sbjct: 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADRVVVMYKGEIVE 235
Query: 1423 YDSPRQLLED 1432
++L +
Sbjct: 236 TGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 50/236 (21%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+E+L V Y VL+ ++ + + +VG G+GKSTL++A+ +++P+ G I +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVI-----NK 1320
G + R R+ +PQ R ++D P+ + +V+
Sbjct: 59 FGKPLEKE-----RKRIGYVPQ---------RRSIDRDFPIS------VRDVVLMGLYGH 98
Query: 1321 CHLAEIVRQDQR--------------LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366
L + + + L D + E S GQ+Q V LAR L++ +L
Sbjct: 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGE----LSGGQQQRVLLARALVQDPDLL 154
Query: 1367 VLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1420
+LDE A +D T I + +RE T++ V H + V++ D VL+L+ V
Sbjct: 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 27/265 (10%)
Query: 532 VLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS---D 588
VL LA F E LP + + + + RI E + + P + A
Sbjct: 277 VLLPLAAF----EAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGK 332
Query: 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648
+++ + ++ L G +VA+ G GSGKS+LL+++ G +
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLP------PGERVAILGPSGSGKSTLLATLAGLLD 386
Query: 649 RISG------------AAIKVHGKKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLE 695
+ G +V + + Q + + T+REN+ + D LE
Sbjct: 387 PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALE 446
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L + DG +V+GE G LSGG++QR+ LARA+ +++ + + D+P +DA T
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 756 GTHLFKQCLMGLLSQKTVLYTTHQL 780
L + L LS +TV+ TH L
Sbjct: 507 ADELLEDLLAA-LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-20
Identities = 133/566 (23%), Positives = 240/566 (42%), Gaps = 97/566 (17%)
Query: 929 LIGVFIF-LSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRIL 987
LIG+F F LS SSF + + K + L L + SVF F D+ P S++
Sbjct: 105 LIGIFQFILSFISSF-------CMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKL- 156
Query: 988 NRCSTDQSTVDTDIPYRLAGLAFALIQLLSII-ILMSQAAWQVFPLFLVILGISIWYQAY 1046
S +D + AG+ I + + + W +F + L I+ +
Sbjct: 157 ------TSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210
Query: 1047 YITTARELARMVGTRKAPILHH------FSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100
YI ++ +K +L++ E++ G T+ + E +L+ +L +
Sbjct: 211 YICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKT-ILKKFNLSEKLY 269
Query: 1101 CVTFHNCGTMEWLCL-RIN--LLFNFAF---FLVLIILVTLPRSAIDPSLAGLAATYGLN 1154
ME L + IN +L ++AF + II+ L + G + +
Sbjct: 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHG-GSVISIL 328
Query: 1155 LNVLQAWVIWN--LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L VL + + L N+ M S+E I + PLV +N+ + KI+ +N
Sbjct: 329 LGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKN 387
Query: 1213 LLVQYNPTLPM-VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI-DG 1270
+ Y+ + + K + T K VG +G GKST+++ + R+ +P+ G I+I D
Sbjct: 388 VRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447
Query: 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN-------LDPLEQHSD---------QEI 1314
++ I L+ RS++ ++ QDP+LF +++ N L LE S+ QE
Sbjct: 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQEN 507
Query: 1315 WEVINKCHL------------------------------AEIVRQDQRLL---------- 1334
N C +E+V +++L
Sbjct: 508 KNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567
Query: 1335 --DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI---RE 1389
+ V + S GQ+Q + +AR +++ +IL+LDEAT+S+D ++ ++Q+TI +
Sbjct: 568 KYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627
Query: 1390 ETSRCTVITVAHRIPTVIDNDLVLVL 1415
+R T+I +AHR+ T+ + + VL
Sbjct: 628 NENRITII-IAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 5e-20
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 28/243 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGIT-CTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I+ EN+ Y+P PM KG+ +F E+ + +VG TGSGKSTL+Q +++PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1265 RILIDGVDI----SMIGLQDLRSRLSIIPQDP--MLFQGTVRT-------NLDPLEQHSD 1311
I I G I L+ LR ++S++ Q P LF+ TV N E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
++ + + K L+E + +P G GQ + V +A V+ + IL LDE
Sbjct: 123 EKALKWLKKVGLSE-----DLISKSPFELSG-----GQMRRVAIAGVMAYEPEILCLDEP 172
Query: 1372 TASIDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
A +D + Q ++ + + TVI V H + V + D VLVL+ GK++++ SP+++
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
Query: 1430 LED 1432
D
Sbjct: 233 FSD 235
|
Length = 287 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-20
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+ I KG V + G G GK++LL I G + S I + G+ V Q
Sbjct: 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
S + T+ EN+ FG +R+ + ++ E L +R + LSGG
Sbjct: 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE----EALELVGLEGFADRKPHQLSGG 140
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLE 781
Q+QR+ LARA+ V + D+P SA+DA + K+ L L + T +Y TH Q E
Sbjct: 141 QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L +D + VM DG+IEQ G E++
Sbjct: 200 ALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 7e-20
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 25/246 (10%)
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
IE+ + + + +L G+ P + + ++G +GSGKSTL++ + ++
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 1260 EPSGGRILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSD--- 1311
P G ILIDG DI S L ++R R+ ++ Q LF TV N+ PL +H+
Sbjct: 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE 118
Query: 1312 ---QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
+E+ V+ K L V D +E S G R+ V LAR + +L L
Sbjct: 119 SLIREL--VLMKLEL---VGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFL 169
Query: 1369 DEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425
DE T+ +D + VI + IRE + TVI V H + +++ D V VL +GKV+ +
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 1426 PRQLLE 1431
P +LL
Sbjct: 230 PEELLA 235
|
Length = 263 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 8e-20
Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 33/321 (10%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATF--RILQEPIYNLPELISMIAQTKVSLYRIQ 567
T ++ FG +++ L+ G L A R+ Q P+ L +L QT ++L R+
Sbjct: 375 TFAILLWFGAHLVIGGALSPGQ-LVAFNMLAGRVTQ-PVLRLAQLWQDFQQTGIALERLG 432
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK----KPTIKLTDKMKIMKG 623
+ + TEP S A A+ G + F+ P + + I G
Sbjct: 433 DILNSP------TEPRS-AGLAALPELRGAITF--ENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI--QTGTI-RENIL 680
+ + G GSGKS+L + +L + + V G + +W+ Q G + +EN+L
Sbjct: 484 EFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542
Query: 681 FGKDMRQSF--------YEEVLEGCAL---NQDIEMWADGDLSVVGERGINLSGGQKQRI 729
F + +R + +E V+ L + I G + VGE+G NLSGGQ+QRI
Sbjct: 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N + IFD+ SA+D + L + + + +TV+ H+L + A D +
Sbjct: 603 AIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIAHRLSTVRACDRI 661
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
+V++ G+I +SG++E+L+A Q
Sbjct: 662 IVLEKGQIAESGRHEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 8e-20
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQ- 666
KG +V + G GSGKS+LL + G + SG + V G V Q
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE-VLVDGLDTSSEKSLLELRQKVGLVFQN 87
Query: 667 --SSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+ + + FG +++ E LE L + ++
Sbjct: 88 PDDQLFGP-TVEDEVAFGLENLGLPREEIE-ERVAEALELVGLEELLDRPPF-------- 137
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVL 774
NLSGGQKQR+ +A + ++ + D+P + +D G + L L + KT++
Sbjct: 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK-GRRELLELLKKLKEEGGKTII 193
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
TH LE + + AD V+V+ DGKI G ++ D
Sbjct: 194 IVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 8e-20
Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 11/268 (4%)
Query: 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSG---GSSFFILG 946
L L L ++ D R LI + I L + G
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLIDGN-GDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006
L + + +RLF ++ + P+SFFD+ + +R + D S + + +L
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPIL 1066
+L ++ I+M W++ + L IL + I A R+L R A
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 1067 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126
ES++G T++ F +E L R ++D T L+ ++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 1127 LVLIILVTLP-RSAIDPSLAGLAATYGL 1153
L L L + + GL
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 9e-20
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G K+A+ G GSGKS+LL + G PQ I +
Sbjct: 25 LKQGEKIALLGRSGSGKSTLLQLLTG----------------DLKPQQGEITLD--GVPV 66
Query: 680 L-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
K + LNQ ++ + +G R SGG++QR+ LAR + +
Sbjct: 67 SDLEKALSSLI-------SVLNQRPYLFDTTLRNNLGRR---FSGGERQRLALARILLQD 116
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ + + D+P +D T L + +L KT+++ TH L ++ D +L +++GKI
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175
Query: 799 QSG 801
G
Sbjct: 176 MQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-20
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ +Y + + T + + ++G +GSGK+T ++ + R++EP+ G IL
Sbjct: 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN-------LDPLEQHSDQEIWEVIN 1319
IDG DIS + +LR ++ + Q LF TV N L ++ + E+++
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
L D E S GQ+Q V +AR L IL++DE ++D T
Sbjct: 120 LVGLDP-----SEYADRYPHE----LSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1380 DNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1436
+Q+ I+E + T++ V H I + D + V+D G++++YD+P ++L + ++
Sbjct: 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230
Query: 1437 FSKLVAEFL 1445
F V +F
Sbjct: 231 F---VEDFF 236
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G +A+ G GSGKS+LL ILG + G I + G+ +PQ S + IR+
Sbjct: 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE-ILIDGED--IPQLSEEELYEIRK 85
Query: 678 NI--------LFGKDMRQSFYEEV----LEGCALNQD-IEMWADGDLSVVGERGIN---- 720
+ LF + + +E V E L + I L +VG RG
Sbjct: 86 RMGVLFQQGALFS-SL--TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 721 ---LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFK--QCLMGLLSQKT 772
LSGG ++R+ LARA+ + ++ D+P S +D + L + +GL T
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL----T 198
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
V+ TH L L AD V V+ DGK+ G E+L+A + VRQ
Sbjct: 199 VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP-WVRQ 243
|
Length = 263 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 14/235 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I +N+ QY LK ++ P + +VG GSGKST+ + + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQHS--DQEIWEVINKCH 1322
+ I+ + LR + I+ Q+P F G V+ ++ LE H+ E+ +++
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA- 126
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
L ++ ++ P A G GQ+Q V +A VL +++LDEAT+ +D
Sbjct: 127 LKQVDMLERA-DYEPNALSG-----GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 1383 IQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
+ +R+ T+I++ H + ++ D V+V+++G V + +P ++ +
Sbjct: 181 LLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 41/251 (16%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+ + NL + Y L ++ GE +G+VG +GSGKSTL + L + +PS G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGET-LGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1265 RILIDGVDI-SMIGLQDLRSRLSIIPQDPML----FQGTVRTNL-DPLEQH----SDQEI 1314
IL+DG + + + ++ QDP + TV L +PL H S Q I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR-TVGRILSEPLRPHGLSKSQQRI 121
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E++++ L L P G GQRQ + +AR L+ + ++L+LDE T++
Sbjct: 122 AELLDQVGL-----PPSFLDRRPHELSG-----GQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1375 IDTATDNVIQ-------QTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1425
+D +Q +++E T + ++H + ++++ D + V+D G+++E
Sbjct: 172 LDV----SVQAQILNLLLELKKE-RGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE-IG 224
Query: 1426 PRQLLEDNSSS 1436
P + L + S
Sbjct: 225 PTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 38/197 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK-AYVPQSS-- 668
+ + +G VA+ G G GKS+LL I G + G + G YV Q
Sbjct: 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDAL 84
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
W+ T+ +N+ G +++ E E A+ L +VG G
Sbjct: 85 LPWL---TVLDNVALGLELQGVPKAEARER----------AEELLELVGLSGFENAYPHQ 131
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGG +QR+ LARA+ + DV + D+PFSA+DA T L ++ L+ + + KTVL TH
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKTVLLVTH 190
Query: 779 QLE---FLDAADLVLVM 792
++ FL AD V+V+
Sbjct: 191 DIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 20/191 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G A+ G GSGKS++++ +L + G + + GK + V Q
Sbjct: 40 GEVTALVGPSGSGKSTVVA-LLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV 98
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ ++++NI +G ++ +E V E + I A G + VGE+G LSGGQK
Sbjct: 99 LFARSLQDNIAYG--LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARA+ N V I D+ SA+DA + +Q L ++TVL H+L ++ A
Sbjct: 157 QRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALYDWPERRTVLVIAHRLSTVERA 215
Query: 787 DLVLVMKDGKI 797
D +LV+ G+I
Sbjct: 216 DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 3e-19
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 35/184 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG + G G+GK++L+ ILG + SG IKV GK + ++
Sbjct: 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGK------DIKKEPEEVKR 73
Query: 678 NI--LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
I L + S YE +L+V + LSGG KQR+ LA+A+
Sbjct: 74 RIGYLPEEP---SLYE------------------NLTV--RENLKLSGGMKQRLALAQAL 110
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMK 793
+ ++ I D+P S +D + F + L L + KT+L ++H LE + D V ++
Sbjct: 111 LHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169
Query: 794 DGKI 797
+G+I
Sbjct: 170 NGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS-SW 669
G +A+ G G GK++LL I G R I + G+ V Q +
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQR 728
T+ ENI FG +R E+ + E+ L + R + LSGGQ+QR
Sbjct: 84 FPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQR 138
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDA 785
+ LARA+ + + D+P SA+DA L ++ L L + T +Y TH Q E L
Sbjct: 139 VALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALAL 197
Query: 786 ADLVLVMKDGKIEQSG 801
AD + VM +G+I Q G
Sbjct: 198 ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 4e-19
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 32/230 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+EL + + L G++ T PGE + ++G G+GKSTL++ L V P G
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 1266 ILIDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL----DPLEQHSDQEIWEVIN 1319
ILIDG ++ +D + ++ + Q+ L +V N+ +P + + +I+
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR------FGLID 118
Query: 1320 KCHLAEIVRQ------DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
+ + R+ D V + S+ QRQ+V +AR L R+L+LDE TA
Sbjct: 119 RKAMRRRARELLARLGLDIDPDTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTA 174
Query: 1374 SIDTA-TDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1420
++ T+ + IR ++ +I ++HR+ V + D + VL +G+V
Sbjct: 175 ALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 19/239 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL Y P LK ++ + + + ++G +G+GKSTL++ L +VEP+ G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1268 IDGVDISMIG---LQDLRSRLSIIPQDPMLF-QGTVRTNL--DPLEQHSDQEIWEVI-NK 1320
IDG DI+ + L+ LR ++ +I Q L + +V N+ L + S W +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS---TWRSLFGL 116
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGE----NWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
E R L + + S GQ+Q V +AR L+++ ++++ DE AS+D
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1432
A+ + ++ TVI H++ + D ++ L +G+++ +D P L D
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD 234
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 7e-19
Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 21/204 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+++ GS VA+ G GSGKS+LL I G SG I+++G+ A +V Q
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR-IRLNGQDATRVHARDRKIGFVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
+ + T+R+NI FG ++R+ ++ + + +E+ L +G+R N LSGG
Sbjct: 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKA--RVEELLELV---QLEGLGDRYPNQLSGG 134
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYTTHQLEF 782
Q+QR+ LARA+ V + D+PF A+DA L + + L + TV T Q E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194
Query: 783 LDAADLVLVMKDGKIEQSGKYEDL 806
++ AD ++VM +GKIEQ G +++
Sbjct: 195 MEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 8e-19
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 20/202 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS++L + G I I G I+ ++ VPQ +
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRDVTQQSLRRAIGIVPQDTV 347
Query: 670 IQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ TI NI +G+ EEV E ++ I+ +G + VGERG+ LSGG+K
Sbjct: 348 LFNDTIAYNIKYGRPDAT--AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +AR + N + I D+ SA+D HT + L + + +T L H+L + A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDA 464
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++V+ +G+I + G +E+L+A
Sbjct: 465 DEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 8e-19
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++E L Y LKGI + ++G G+GKSTL Q L +++PS GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1268 IDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVIN-KCH 1322
DG +D S GL LR + ++ QDP LF +V ++ + +N K
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS----------FGAVNLKLP 114
Query: 1323 LAEIVRQDQRLLD----APVAEDGENW-SVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
E+ ++ L + + + S GQ++ V +A VL+ + ++LVLDE TA +D
Sbjct: 115 EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174
Query: 1378 ATDNVIQQTIRE--ETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1432
+ I + + E + T+I H I V + D V V+ EG+V+ +P+++ +
Sbjct: 175 MGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 55/232 (23%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------KAYV 664
+++ +G + G GSGKS LL +I G I SG I ++GK +YV
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISYV 76
Query: 665 PQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCA-------LNQDIEMWADGDLS 712
PQ+ + T+ +NI +G K ++ +VLE LN+ E
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-------- 128
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGG++QR+ +ARA+ N + + D+PFSA+D T K+ L L +
Sbjct: 129 -------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKIR 176
Query: 771 ----KTVLYTTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TVL+ TH E +A AD V +M +GK+ Q GK E++ +E V
Sbjct: 177 KEFGVTVLHVTHDFE--EAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFV 226
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-18
Identities = 107/406 (26%), Positives = 182/406 (44%), Gaps = 75/406 (18%)
Query: 448 EAKDARIKATS---ETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTCSA 500
E ++A KA E L MR ++ + E F + L ++ + +K L A
Sbjct: 331 ELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK---RKAL----A 383
Query: 501 IAFLFW-----ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
A W V V+ +G ++L ++SG ++S L L E + L + S
Sbjct: 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSG 443
Query: 556 IAQTKVSLYRIQEFIKEDNQKKPITEPTS-----------KASDVAIDIEAGEYAWDARE 604
+ Q + ++ E++ +KP T + DV+ +++ R
Sbjct: 444 MMQAVGASEKVFEYL----DRKPNIPLTGTLAPLNLEGLIEFQDVS-------FSYPNRP 492
Query: 605 ENFKKPTIK-LTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK 656
+ P +K LT + G VA+ G GSGKS++ + + G++ + G +
Sbjct: 493 D---VPVLKGLT--FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVPLV 546
Query: 657 ------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL----EGCALNQDIEMW 706
+H + A V Q + +G++RENI +G + + EE++ A + +E
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEIMAAAKAANAHDFIMEFP 604
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
D + VGE+G LSGGQKQRI +ARA+ V I D+ SA+DA +Q L
Sbjct: 605 NGYD-TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-----EQLLQE 658
Query: 767 LLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
S+ TVL H+L ++ AD +LV+K G + + G ++ L+ DQ
Sbjct: 659 SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-18
Identities = 86/325 (26%), Positives = 156/325 (48%), Gaps = 45/325 (13%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLS--ALATFRILQEPIYNLPELISMIAQTKVSLYRIQ 567
T+++++ G ++ K L G V++ AT I + L ++++ I Q ++ +++
Sbjct: 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR-----LDQVVAFINQVFMAAPKLE 307
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIE--AGEYAWDAREENFKKPTIK--LTD-KMKIMK 622
EF + ++ + +P AID+ G +D + +F + + D +
Sbjct: 308 EFFEVEDAVPDVRDPPG-----AIDLGRVKGAVEFD--DVSFSYDNSRQGVEDVSFEAKP 360
Query: 623 GSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS+L++ + G I I G I+ + A V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LIDGTDIRTVTRASLRRNIAVVFQDAG 419
Query: 670 IQTGTIRENILFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ +I +NI G+ +MR E + IE DG +VVGERG LSG
Sbjct: 420 LFNRSIEDNIRVGRPDATDEEMR-----AAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QR+ +ARA+ + + I D+ SA+D T + K L L+ +T H+L +
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTV 533
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV +G++ +SG +++L+A
Sbjct: 534 RNADRILVFDNGRVVESGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-18
Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 36/332 (10%)
Query: 509 PTLVSVITFGVCILLKT--PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR- 565
P L S F I L L+ G+ L+ F + L + I + L+
Sbjct: 369 PVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV-IPLWER 427
Query: 566 ---IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIM 621
I E + E ++ K T+P + + +D Y D P I L D ++I
Sbjct: 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDG-------PLI-LDDVSLQIE 477
Query: 622 KGSKVAVCGSVGSGKSSLLSSILG-EIPRI-----SGAAIK------VHGKKAYVPQSSW 669
G VA+ G GSGKS+LL +LG E P G + V + V Q+
Sbjct: 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ +G+I ENI G + E L +DI G +V+ E G LSGGQ+QR+
Sbjct: 538 LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ + +FD+ SA+D T + + L L + T + H+L + AD +
Sbjct: 598 LIARALVRKPRILLFDEATSALDNRTQAIV-SESLERL--KVTRIVIAHRLSTIRNADRI 654
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELV-RQM 818
V+ G++ Q G Y++L+A + ++L RQ+
Sbjct: 655 YVLDAGRVVQQGTYDELMAREGLFAQLARRQL 686
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 55/191 (28%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK------AYVPQS 667
I G +A+ G GSGKS+L ILG + R+ GA I Y+PQ
Sbjct: 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD 84
Query: 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
+ +G+I ENIL SGGQ+Q
Sbjct: 85 DELFSGSIAENIL-----------------------------------------SGGQRQ 103
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAA 786
R+ LARA+Y N + + D+P S +D G Q + L + T + H+ E L +A
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVIAHRPETLASA 162
Query: 787 DLVLVMKDGKI 797
D +LV++DG++
Sbjct: 163 DRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-18
Identities = 80/316 (25%), Positives = 155/316 (49%), Gaps = 29/316 (9%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569
+++ ++ G +++K L+ G V++ + +L I L ++ I Q + ++++F
Sbjct: 253 SMMCILVIGTVLVIKGELSVGEVIAFIGFANLL---IGRLDQMSGFITQIFEARAKLEDF 309
Query: 570 IKEDNQKKPITEPTS--KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVA 627
++ EP + +V +E ++ N + ++ + K G VA
Sbjct: 310 FDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF--ANSSQGVFDVSFEAK--AGQTVA 365
Query: 628 VCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSWIQTGT 674
+ G G+GK++L++ + +G+I I G I ++ A V Q + + +
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRKSIATVFQDAGLFNRS 424
Query: 675 IRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
IRENI G++ + EEV E A + I ++G ++VGERG LSGG++QR+ +
Sbjct: 425 IRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ N+ + + D+ SA+D T + K + L +T H+L + ADLVL
Sbjct: 483 ARAILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLF 541
Query: 792 MKDGKIEQSGKYEDLI 807
+ G++ + G +++LI
Sbjct: 542 LDQGRLIEKGSFQELI 557
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 45/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GKS+LL I G + + I + G+ A V Q
Sbjct: 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82
Query: 667 S-SWIQTGTIRENILFGKDMRQSF-------YEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T+ ENI FG +R +EV + L + +
Sbjct: 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-----------KP 131
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT-------GTHLFKQCLMGLLSQK 771
+ LSGGQ+QR+ LARA+ V++ D+P S +DA L ++
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER------LGT 185
Query: 772 TVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T +Y TH Q+E + AD ++VM DG+I+Q G +L
Sbjct: 186 TTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 33/220 (15%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1298
++G TGSGKS L++ + ++P G+IL++G DI+ L + +S +PQ+ LF T
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 1299 VRTNL---------DPLEQHSD-QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348
V N+ D E EI E++ HL R+ + L S G
Sbjct: 88 VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN--RKPETL------------SGG 133
Query: 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTV 1406
++Q V +AR L+ +IL+LDE +++D T +++ +++ + TV+ V H
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1407 -IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
D V ++ GK+++ P ++ + + F VAEFL
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEVFKKPKNEF---VAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 14/221 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLR 1282
L ++ + + G++G G+GK+TL + + P+ G +L DG DI+ GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1283 SRLSIIP--QDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD--- 1335
+RL I Q P LF TV N+ + + + + E + + LL+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG 132
Query: 1336 -APVAED-GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
A +A+ S GQ++ + +AR L ++L+LDE A ++ + + IRE R
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 1394 -CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1432
TV+ V H + V+ D V VLD+G+V+ +P ++ +
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-18
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 43/245 (17%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y + +L G++ T P + + ++GR G+GK+TL++ + ++ P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1268 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNLD----PLEQHSDQEIWEVI- 1318
DG DI+ GL R+R I +P+ +F TV NL + + E +
Sbjct: 59 FDGRDIT--GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY 116
Query: 1319 ----NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA- 1373
L E R+ Q S G++Q++ +AR L+ + ++L+LDE +
Sbjct: 117 ELFPR---LKE--RRKQL---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162
Query: 1374 ---SIDTATDNVIQQTIREETSRCTVITV---AHRIPTVIDNDLVLVLDEGKVLEYDSPR 1427
I I++ E T++ V A + D VL+ G+V+ +
Sbjct: 163 LAPKIVEEIFEAIRELRDEGV---TILLVEQNARFALEIADR--AYVLERGRVVLEGTAA 217
Query: 1428 QLLED 1432
+LL D
Sbjct: 218 ELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 5e-18
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKI-GVVGRTGSGKSTLIQALFRVVEP-SG- 1263
IE+ +L + Y LK I P + K+ ++G +G GKSTL++ L R+ + G
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIP-KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 1264 ---GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEV 1317
G +L+DG +I + + +LR R+ ++ Q P F ++ N+ L H
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHG------- 116
Query: 1318 INKCHLAEIVRQ--------DQ---RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366
I L EIV D+ RL + + G GQ+Q +C+AR L K +L
Sbjct: 117 IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG-----GQQQRLCIARALAVKPEVL 171
Query: 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKV 1420
++DE T+++D + I++ I E + T++ V H R+ +D G++
Sbjct: 172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGEL 226
Query: 1421 LEYDSPRQLLED 1432
+E+ ++ +
Sbjct: 227 VEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 52/256 (20%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+ENL Y P LK I PGE + ++G +G+GKSTL++ + R+VEPS G I
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEF-VAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1267 LIDGVDISMIG---LQDLRSRLSIIPQDPML----------------FQGTVRTNLDPLE 1307
L++G DI+ + L+ LR R+ +I Q L ++ T R+ L
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1308 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367
+ + + + LA+ + QR + S GQ+Q V +AR L ++ +++
Sbjct: 120 EEDKERALSALERVGLAD--KAYQR---------ADQLSGGQQQRVAIARALAQQPDLIL 168
Query: 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN-----------DLVLVLD 1416
DE AS+D T + ++ I I TVI N D ++ L
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKR-------INKEDGI-TVIINLHQVDLAKKYADRIVGLK 220
Query: 1417 EGKVLEYDSPRQLLED 1432
G+++ +P +L ++
Sbjct: 221 AGEIVFDGAPSELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 9e-18
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE++NL Y P LK + + + ++G +G+GKSTL+++L +V+P+ G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1268 IDGVDIS-MIG--LQDLRSRLSIIPQDPMLFQG-TVRTN--LDPLEQHSDQEIWEVINKC 1321
+GV I+ + G L+ LR + +I Q L +V N L L S W +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS---TWRSL--- 116
Query: 1322 HLAEIVRQD-QRLLDA--------PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
++D + LDA + S GQ+Q V +AR L+++ +I++ DE
Sbjct: 117 -FGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 1373 ASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
AS+D + + +++ TVI H++ D ++ L G+++ +D P
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASE 234
Query: 1430 LED 1432
L D
Sbjct: 235 LTD 237
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-17
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 14/232 (6%)
Query: 603 REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI------- 655
R EN KP +K K I G KV +CG GSGKSSL + + G +
Sbjct: 28 RYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86
Query: 656 -----KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
+ + + + Q + +G+IR N+ E LE L ++ G
Sbjct: 87 KLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGL 146
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+VV E G N S GQ+Q LARA S + I D+ +++D T ++ ++ +M +
Sbjct: 147 DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFAD 205
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
+TV+ H++ + ADLVLV+ G + + E+L+A ++ ++ +
Sbjct: 206 RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 41/209 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------------- 661
+I G VA+ G GSGKS+LL+ +LG + + + + ++GK
Sbjct: 27 EIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG--ERG 718
+V Q+ + + T+ EN+ + + A+ L V+G +R
Sbjct: 86 GFVFQNFNLLPDLTVLENVELPLLIAGK----------SAGRRKRAAEELLEVLGLEDRL 135
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
+ LSGGQ+QR+ +ARA+ +N + + D+P +D+ T + + L+ L++
Sbjct: 136 LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRELNKERG 193
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
KT++ TH E AD V+ +KDGKIE+
Sbjct: 194 KTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 35/246 (14%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS-- 1262
IE+ENL + Y LK I P + ++G +G GKSTL+++L R+ + P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1263 -GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEV 1317
G++L DG DI I + +LR R+ ++ Q P F ++ N P + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGP-------RLHGI 111
Query: 1318 INKCHLAEIVRQ--------DQ---RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366
+K L EIV + D+ RL D+ + G GQ+Q +C+AR L + +L
Sbjct: 112 KDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG-----GQQQRLCIARALAVEPEVL 166
Query: 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425
+LDE T+++D I++ I+E + T++ V H + +D +G+++EY
Sbjct: 167 LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 1426 PRQLLE 1431
Q+
Sbjct: 227 TEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ L+ + Y PM TF + +VG +GSGKSTL+ + P GR+L
Sbjct: 1 VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
I+GVD + +S++ Q+ LF TV N+ + L
Sbjct: 57 INGVD--VTAAPPADRPVSMLFQENNLFAHLTVEQNVG----------LGLSPGLKLTA- 103
Query: 1327 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+D++ ++ +A G S G+RQ V LARVL++ K +L+LDE A++D
Sbjct: 104 --EDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 1378 ATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420
A + + ET + TV+ V H+ V+ LD G++
Sbjct: 162 ALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 44/273 (16%), Positives = 97/273 (35%), Gaps = 9/273 (3%)
Query: 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQW 338
L AG + + + + +G S ++L +V + + L +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVL----QGLLLQGS 61
Query: 339 YFGANRIGIRVRSALTVLIYKRSMAI---KFAGPSSGIIINMINVDVERIGDFFLYIHRI 395
++ R+G R+R L + ++ + + F S G + + + DV +I D +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 396 WLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIK 455
+ + + I+ G L +++ + LA + + + +A
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 456 ATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA-IAFLFWASPT-LVS 513
E+L +R +K E+ L++ + E + K T S
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPI 546
+ FG +++ L+ G V + L+ L P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I L N + P+ L G++ + V+G G+GKSTL+ A+ ++P+ G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-----TVRTNLDPLEQHSDQEIW---- 1315
+ILIDGVD++ + + L+ + QDP+ G T+ NL E +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLA--GTAPELTIEENLALAESRGKKRGLSSAL 119
Query: 1316 -EVINKCHLAEIVRQDQRL---LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
E + R L L + S GQRQ + L L +IL+LDE
Sbjct: 120 NERRRSSFRERLARLGLGLENRLSDRI----GLLSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 1372 TASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK-VLEYDSP 1426
TA++D T + + + E + T + V H + +D + +++L GK VL+
Sbjct: 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 34/237 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ L+++ Y LPM T P + + ++G +G+GKSTL+ + P+ G IL
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
I+GVD +S++ Q+ LF TV N+ L ++
Sbjct: 58 INGVD--HTASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKLNAE--------- 105
Query: 1327 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ ++A A+ G S GQRQ V LAR L++++ IL+LDE +++D
Sbjct: 106 ---QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 1378 ATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
A + + +E T++ V H D V+ LD G++ S ++LL
Sbjct: 163 ALRAEMLALVSQLCDERKM-TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I G VA+ G GSGKS+LL I G SG+ I + G+ + +R
Sbjct: 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDL---TDLEDELPPLRRR 77
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
I G QD ++ L+V+ + LSGGQ+QR+ LARA+ +
Sbjct: 78 I----------------GMVF-QDFALFPH--LTVLENIALGLSGGQQQRVALARALAMD 118
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYTTHQLEFLDA-ADLVLV 791
DV + D+P SA+D T ++ + LL TV+ TH L+ AD V+V
Sbjct: 119 PDVLLLDEPTSALDPIT-----RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 792 MKDGK 796
++DGK
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IEL+NL Y V LKG++ + GE + +VG +GSGKSTL+ L + P+ G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEF-VAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 1265 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD-PLE--QHSDQEIWE 1316
+ +DG DIS + ++L R + + Q L T N++ PL +E E
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
L E V RL + +E S GQ+Q V +AR L +I++ DE T ++D
Sbjct: 120 RAE--ELLERVGLGDRL-NHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDL------VLVLDEGKV 1420
+ T + + +RE + + T++ V H D +L ++ L +GK+
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTH------DPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 4e-17
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 17/240 (7%)
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKST---LIQALFRVV 1259
+E +++ Y + L I+ + P ++G GSGKST LI L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 1260 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD-PLE--QHSDQEI 1314
+ +I +DG+ ++ + D+R ++ I+ Q+P TV ++ LE E+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
+++ V D +LD +E N S GQ+Q V +A +L + +I++LDE+T+
Sbjct: 121 IKIVRD------VLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1375 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
+D A I + IR+ + + TVI++ H I D VLVLD+GK+L SP ++
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 1208 IELENLLVQY----NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
I+ +N+ +Y T + L + + + ++GR GSGKST+ + + ++ PS
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1264 GRILIDGVDISMIG-LQDLRSRLSIIPQDP------------MLFQGTVRTNLDPLEQHS 1310
G++ +DG+D S L D+R++ ++ Q+P + F G + P E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPENLGIPPEEIRE 123
Query: 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370
+ E + K + E R LL S GQ+Q V +A +L + ++ DE
Sbjct: 124 RVD--ESLKKVGMYEYRRHAPHLL-----------SGGQKQRVAIAGILAMRPECIIFDE 170
Query: 1371 ATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1428
TA +D + + TI+E + T+I + H + ++ D ++V+D GKV+ +P++
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 1429 LLED 1432
+ ++
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 45/225 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ G VA+ G G+GKS+LL+ I G SG I ++G A P S Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NL 721
T+ +NI G + G LN + + + VG G L
Sbjct: 81 NLFAHLTVAQNIGLG----------LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLY 775
SGGQ+QR+ LAR + + + D+PFSA+D + ++ L+SQ T+L
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRAEMLALVSQLCDERKMTLLM 185
Query: 776 TTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
TH E DA AD V+ + +G+I G ++L++ + S
Sbjct: 186 VTHHPE--DAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 6e-17
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
+K ++ T + + ++G GSGKSTL + L ++EP+ G ILI+ + R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 1285 LSIIPQDP-----------MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1333
+ +I QDP + +R N D + ++I+E + L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL---------- 138
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
L + GQ+Q V LAR L+ + +I++ DEA AS+D + + + + E +
Sbjct: 139 LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 1394 CTV--ITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
+ I V I +I + D VLV+ EG+V+E S +L +K + E
Sbjct: 199 QGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 7e-17
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 14/232 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I +E++ +Y LK ++ + + GE + +VG GSGKSTL + L ++ P G
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEW-VAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH 1322
I + G+ +S + D+R ++ ++ Q+P F G TV+ ++ LE E++ +
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVD 122
Query: 1323 LA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
A V + L P G GQ+Q V +A VL + I++LDEAT+ +D
Sbjct: 123 QALRQVGMEDFLNREPHRLSG-----GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 1382 VIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
+ +T+R+ E TV+++ H + D V+V+++G++LE +P ++ +
Sbjct: 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID------GVDISMIG 1277
+LK IT P G++G +GSGKSTL++ L R++E +I +D G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1278 LQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLEQH---SDQEIWEVINKC-HLAEIVRQDQ 1331
LR + ++ Q P F ++ N+ PL+ H +EI +++ +C + ++
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
L++P ++ S GQ+Q + +AR L K ++L++DE T+ ID I++ I E
Sbjct: 145 DRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 1392 SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
+ ++ V+H V D V L G+++E+ S ++
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 8e-17
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y L+G++ + + ++GR G+GK+TL++ + +V P GRI+
Sbjct: 4 LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 1268 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH 1322
DG DI+ GL R+RL I +P+ +F TV NL D+E E
Sbjct: 62 FDGEDIT--GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD---- 115
Query: 1323 LAEIV--------RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
L E+ R++QR S G++Q++ +AR L+ + ++L+LDE +
Sbjct: 116 LEEVYELFPRLKERRNQR---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 166
Query: 1375 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431
+ I + I+E + T++ V ++ D VL+ G+++ + +LL
Sbjct: 167 LAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
Query: 1432 DNSSSFSKLVAEFL 1445
D + +L
Sbjct: 227 D-----PDVREAYL 235
|
Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-17
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L G++ + + ++G G+GKSTL++AL + P G + ++GV ++ ++L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1284 RLSIIPQD-----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1338
+++PQ+ P Q V+ P + E E I LA D L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALA---ATD---LSGLA 129
Query: 1339 AEDGENWSVGQRQLVCLARVLLK------KKRILVLDEATASIDTATDNVIQQTIREETS 1392
D S G++Q V LARVL + R L LDE T+++D A + + R+
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 1393 R-CTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
V+ V H + D +++L +G+V+ SP+ +L D +
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-16
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 69/203 (33%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G V + G G+GKS+LL ++ G + SG I + GK AYVPQ
Sbjct: 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQ-- 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGIN-LSGGQK 726
AL + L+ +R N LSGG++
Sbjct: 81 -----------------------------ALELLGLA-----HLA---DRPFNELSGGER 103
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ------KTVLYTTHQ 779
QR+ LARA+ + + D+P S +D AH + L+ LL + KTV+ H
Sbjct: 104 QRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLARERGKTVVMVLHD 157
Query: 780 LEF-LDAADLVLVMKDGKIEQSG 801
L AD V+++KDG+I G
Sbjct: 158 LNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGK++ L I I SG I + G+ YV
Sbjct: 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI K+ + +E+L+ L D S
Sbjct: 81 IQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL----------DPS 126
Query: 713 VVGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
+R + LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q + L +
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL--QEEIKELQKE 184
Query: 771 --KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
KT+++ TH + E L AD + VM G+I Q ++++A+ ++ V
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+E+L +Y LKG++ + P K ++G G+GKSTL+ L + P GR+
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWEVINKCHL 1323
+ G +++ + +RS++ ++ QDP +F TV ++ P+ D++ EV +
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRVEE 121
Query: 1324 A-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
A + VR P + S GQ++ V +A VL ++VLDE A +D
Sbjct: 122 ALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 1383 IQQTIREETSRCTVITVA-HRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ + + ++ + VA H + + D V+VL EG+VL L +++
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-16
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 44/213 (20%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF-------- 1256
I LENL ++ P +L + +++ + G +G+GK++L++AL
Sbjct: 390 DHGITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 1257 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQE 1313
R+ P+ +L +PQ P L QGT+R L + SD E
Sbjct: 449 RISMPADSALLF-------------------LPQRPYLPQGTLREALCYPNAAPDFSDAE 489
Query: 1314 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENW----SVGQRQLVCLARVLLKKKRILVLD 1369
+ V++K L ++ + W S G++Q + AR+LL K + + LD
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLD 540
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
EAT+++D T++ + Q ++EE TVI+V HR
Sbjct: 541 EATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GE + G +G GKSTL++ + ++ P+ G +L +G D+S + + R ++S Q P
Sbjct: 28 AGEFIA-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86
Query: 1293 MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352
LF TV NL Q ++ LA +L + S G++Q
Sbjct: 87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL-PDSILTKNI----TELSGGEKQR 141
Query: 1353 VCLARVLLKKKRILVLDEATASIDTAT----DNVIQQTIREETSRCTVITVAH 1401
+ L R L +IL+LDE T+++D + + +I + +RE+ V+ + H
Sbjct: 142 IALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ--NVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 44/228 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + KG V + G GSGKS+LL + G E +I V G+ +R
Sbjct: 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDK----KDILKLR 76
Query: 677 ENI--LFGKDMRQSF----YEEVLEGCALNQDIEMWADGD------------LSVVG--E 716
+ +F Q F + VLE L + L VG +
Sbjct: 77 RKVGMVF-----QQFNLFPHLTVLENVTLAP---VKVKKLSKAEAREKALELLEKVGLAD 128
Query: 717 RG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LSGGQ+QR+ +ARA+ + V +FD+P SA+D + +M L++
Sbjct: 129 KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAEEG 186
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH++ F + AD V+ M GKI + G E+ + SE RQ
Sbjct: 187 MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234
|
Length = 240 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 20/234 (8%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281
L ++ P + GV+G +G+GKSTLI+ + + P+ G +++DG D++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1282 RSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
R ++ +I Q +L TV N+ PLE EI + + LA + D+ D+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL-LALVGLGDKH--DSY 137
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CT 1395
+ N S GQ+Q V +AR L ++L+ DEAT+++D AT I + ++E R T
Sbjct: 138 PS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 1396 VITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
++ + H + V D V V+ G+++E + ++ S + L +F+R T
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF---SHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG- 1263
KIE+ +L V + VL G+ P ++G +GSGKSTL++ R++E P
Sbjct: 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1264 --GRILIDGVDISMIGLQDLRSRLSIIPQDP------MLFQ----GTVRTNLDPLEQHSD 1311
G + +DG DI + + +LR R+ ++ Q P +F+ G L ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
+ + + K L + V+ LDAP + S GQ+Q +C+AR L + +L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVKDR---LDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1372 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
TA++D I+ E T++ V H +D V L +G+++E+ R++
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 43/208 (20%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP--------- 665
+ G+ G+GKS+LL I G + + G I ++G KK +P
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 666 --QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + +REN+ FG ++ R S +E+L+ L+ + R
Sbjct: 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISV-DELLDLLGLDH------------LLNR 127
Query: 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVL 774
LSGG+KQR+ LARA+ + ++ + D+PFSA+D L + L + V+
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-LKQIKKNLNIPVI 186
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH L + AD ++VM+DG+++ G
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-16
Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------------ 661
I +G + G GSGKS+LL ++ G P G+ + G
Sbjct: 47 IEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 662 --AYVPQS----SWIQTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWAD 708
+ V Q W T+ EN+ FG +M R+ +E LE L Q WAD
Sbjct: 107 RVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQ----WAD 159
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
GE LSGG +QR+ LARA + + + + D+PFSA+D T L + L+ L
Sbjct: 160 ---RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE-LLELQ 211
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
S+ KT+++ +H L E L + + +M+ G+I Q G E+++ + ++ V AH
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH---- 267
Query: 826 DQVNP 830
NP
Sbjct: 268 --TNP 270
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 42/247 (17%)
Query: 601 DAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----- 652
++EE KK T+ + D + + +G + G GSGKS+LL I I SG
Sbjct: 25 KSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
Query: 653 ----------AAIKVHGKK-AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEV 693
++ KK + V QS + + T+ EN+ FG + R+ E
Sbjct: 85 GQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA 144
Query: 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LE L E W E LSGG +QR+ LARA+ + D+ + D+ FSA+D
Sbjct: 145 LELVGL----EGWEH---KYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 754 HTGTHLFKQCLMGLLS--QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + L+ L + QKT+++ TH L E L D + +MKDG++ Q G E+++ +
Sbjct: 194 LIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
Query: 811 NSELVRQ 817
++ VR+
Sbjct: 253 ANDYVRE 259
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 20/202 (9%)
Query: 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLFQG 1297
G++G G+GK+TL++ + ++ P G++ IDGVD +R ++ ++ + + +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-VRRKIGVLFGERGLYARL 90
Query: 1298 TVRTNL---DPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQL 1352
T R NL L S +EI K +AE+ + Q LD V E +S G +Q
Sbjct: 91 TARENLKYFARLNGLSRKEI-----KARIAELSKRLQLLEYLDRRVGE----FSTGMKQK 141
Query: 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-N 1409
V +AR L+ ILVLDE T+ +D T I++ R + + +H + V
Sbjct: 142 VAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS-SHIMQEVEALC 200
Query: 1410 DLVLVLDEGKVLEYDSPRQLLE 1431
D V+VL +G+V+ S L
Sbjct: 201 DRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 38/253 (15%)
Query: 1208 IELENLLVQY---NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP-- 1261
+E++NL V + + + G++ GE +G+VG +GSGKS L +A+ ++
Sbjct: 2 LEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEI-LGIVGESGSGKSVLAKAIMGLLPKPN 59
Query: 1262 ---SGGRILIDGVDISMIG---LQDLR-SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEI 1314
GG IL DG D+ + L+ +R +++I QDPM T+L+P+ DQ I
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM-------TSLNPVMTIGDQ-I 111
Query: 1315 WEVINKCHL----AEIVRQDQRLLDA---PVAEDGEN-----WSVGQRQLVCLARVLLKK 1362
EV+ E + LL+ P E S G RQ V +A L
Sbjct: 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1363 KRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1419
++L+ DE T ++D I ++E +I + H + V + D V V+ G+
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
Query: 1420 VLEYDSPRQLLED 1432
++E ++ ++
Sbjct: 232 IVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
+EN+ Y +L ++ + I + G+ G+GK+TL + L +++ S G IL+
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDP-LEQHSD--QEIWEVINKCHL 1323
+G I ++ R + + QD LF +VR L L++ ++ V+ L
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL 116
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+ + L S GQ+Q + +A LL K +L+ DE T+ +D +
Sbjct: 117 YALKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
Query: 1384 QQTIREETSRCTVITVA 1400
+ IRE ++ + V
Sbjct: 166 GELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------- 662
+ I KG VA+ G GSGKS+LL+ ILG + R + ++V G
Sbjct: 25 LSIEKGEFVAIVGPSGSGKSTLLN-ILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83
Query: 663 --YVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V QS + + T EN+ + +E A+ L VG
Sbjct: 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKE----------RRERAEELLERVGLGDR 133
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
LSGGQ+QR+ +ARA+ ++ + + D+P +D+ TG + +M LL +
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG-----KEVMELLRELNK 188
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKI 797
T++ TH E + AD ++ ++DGKI
Sbjct: 189 EAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 47/248 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL + VLKGI+ + GE + ++G +GSGKSTL++ L + EP G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEV-VVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1267 LIDGVDIS-MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1325
+DG D+ + LR ++ M+FQ + NL P H V+ LA
Sbjct: 60 TVDGEDVGDKKDILKLRRKVG------MVFQ---QFNLFP---HLT-----VLENVTLAP 102
Query: 1326 IV-----RQD-----QRLLDAPV--AEDGENW----SVGQRQLVCLARVLLKKKRILVLD 1369
+ + + LL+ V A+ + + S GQ+Q V +AR L ++++ D
Sbjct: 103 VKVKKLSKAEAREKALELLEK-VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161
Query: 1370 EATASID--TATD--NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424
E T+++D + +V++ E T+I V H + + D V+ +D+GK++E
Sbjct: 162 EPTSALDPELVGEVLDVMKDLAEEGM---TMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218
Query: 1425 SPRQLLED 1432
P + ++
Sbjct: 219 PPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQS- 667
I G VA+ G GSGK++LL I G + R I G+ A +V Q
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ + T+ +N+ FG ++ +V E L Q L + +R
Sbjct: 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ---------LDWLADRYP 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYT 776
LSGGQ+QR+ LARA+ V + D+PF A+DA L + + L L TV T
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E L+ AD V+VM G+IEQ G +++ S V
Sbjct: 195 HDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + +G +A+ G GSGKS+LL I+G + SG + + G+
Sbjct: 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLRRRM 79
Query: 662 AYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI- 719
+ QS + T+ EN+ F EE + L + L VG RG
Sbjct: 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGLRGAE 130
Query: 720 -----NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
LSGG K+R+ LARA+ + ++ ++D+P + +D + + + L T
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA-SGVIDDLIRSLKKELGLT 189
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ TH L+ A AD + V+ DGKI G E+L A + LVRQ
Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD-PLVRQ 234
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ N+ ++ L + P + ++G +GSGKSTL++ + + +P GRI
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1323
++G D + + +D ++ + Q LF+ TVR N+ + +H +I + + L
Sbjct: 59 LNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE--L 114
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
E+V Q + L D + S GQRQ V LAR L + ++L+LDE ++D +
Sbjct: 115 LELV-QLEGLGDRYPNQ----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169
Query: 1384 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ +R+ + T + V H ++ D ++V+ GK+ + SP ++ + ++ F
Sbjct: 170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF--- 226
Query: 1441 VAEFL 1445
V FL
Sbjct: 227 VMSFL 231
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-16
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
KI G VA+ G GSGKS++ +++L I I + G A V
Sbjct: 364 FKIPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE-EVLEGCALNQD-IEMWADGDLSVVGERGINLS 722
Q+ + TI NI + + + S + E A D I +G +V+GE G+ LS
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QRI +ARA+ +S + I D+ SA+D + + L L +T L H+L
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLST 541
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++ AD +LV++DG+I + G + +L+A
Sbjct: 542 IEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 7e-16
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 23/282 (8%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
L EP+ L SM+ Q V+ R+ E + D ++ IDI+ +A+
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERVFELM--DGPRQQYGNDDRPLQSGRIDIDNVSFAY- 350
Query: 602 AREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK 661
R++N I L+ + VA+ G GSGKS+L S ++G P G I++ G+
Sbjct: 351 -RDDNLVLQNINLS----VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRP 404
Query: 662 -------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
A V Q + T N+ G+D+ + + LE L + D
Sbjct: 405 LSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPD 464
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
G + +GE+G NLS GQKQ + LAR + + I D+ + +D+ T +Q L +
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT-EQAIQQALAAVR 523
Query: 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
T++ H+L + AD +LV+ G+ + G ++ L+A Q
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 7e-16
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 23/238 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I LEN+ Y P L+ I + IG++G+ GSGKSTL L ++ P G++L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1268 IDGVDISMIG-LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
+ G+D LQ +R + I+ Q+P Q RT + L + N C
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPET-QFVGRTVEEDLAFGPE-------NLCLPPIE 112
Query: 1327 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+R + +D +AE G + S GQ Q V LA +L + L+ DE T+ +D
Sbjct: 113 IR---KRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 1378 ATDNVIQQTIREETSRC-TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+ + + I++ + T++ + H + + D D ++V+D GK++ P +L D S
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 623 GSKVAVCGSVGSGKSS---LLSSIL----GEI-----PRISGAAIKVHGKKAYVPQSSWI 670
G +VA+ G GSGKS+ L++ + GEI PR + A V Q ++
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564
Query: 671 QTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
GT+R+N+ L+ + + + A++ I G + + E G NLSGGQ+QR+
Sbjct: 565 FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAAD 787
++ARA+ N + I D+ SA+D T ++ + L ++ T + H+L + D
Sbjct: 625 EIARALVRNPSILILDEATSALDPET-----EKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679
Query: 788 LVLVMKDGKIEQSGKYEDLIA 808
++V++ GK+ Q G +E+L A
Sbjct: 680 EIIVLERGKVVQRGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 18/238 (7%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
+ ENL Y V+ ++ GE +G++G G+GK+T + +V P
Sbjct: 1 DMSTLVAENLAKSYKKRK--VVNDVSLEVNSGEI-VGLLGPNGAGKTTTFYMIVGLVRPD 57
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSI--IPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVIN 1319
G+IL+D DI+ + + R+RL I +PQ+ +F+ TV N+ + + ++++ +
Sbjct: 58 SGKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116
Query: 1320 KCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
K L ++ L D+ + S G+R+ V +AR L + ++LDE A +D
Sbjct: 117 KEELDALLEEFHITHLRDSK----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172
Query: 1378 ATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
IQ+ I+ R +IT H + +D D ++ +GKVL SP +++ +
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GK++ L I G + + I + G+ A V Q
Sbjct: 21 LDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLS 722
+ + T+ +NI FG +R+ +E+ E A IE ++ + LS
Sbjct: 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-------HLLDRKPKQLS 132
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKTVLYTTH- 778
GGQ+QR+ L RA+ V++ D+P S +DA + K+ L T +Y TH
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL--GTTTIYVTHD 190
Query: 779 QLEFLDAADLVLVMKDGKIEQSG 801
Q+E + AD + VM DG+I+Q G
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 37/243 (15%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ ENL V Y +L ++ + P K ++G G GKSTL++ R++ P G +
Sbjct: 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRT----------NL-DPLEQHSDQEI 1314
+ ISM+ + L RL+++PQ + +G TVR +L L + +
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
+ + + + + D+RL D S GQRQ LA VL + +++LDE T
Sbjct: 120 NQAMEQTRINHLA--DRRLTDL---------SGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
Query: 1375 IDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVIDN------DLVLVLDEGKVLEYDSPR 1427
+D + + +RE T TV+TV H + N D ++VL G V+ +P
Sbjct: 169 LDINHQVELMRLMRELNTQGKTVVTVLHDL-----NQASRYCDHLVVLANGHVMAQGTPE 223
Query: 1428 QLL 1430
+++
Sbjct: 224 EVM 226
|
Length = 255 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 33/229 (14%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-----VEPSGGRILIDGVDISM--IG 1277
+KGI F K ++G +GSGKST +++L R+ + G+IL G+DI+ I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQR---L 1333
+ ++R + ++ Q P F ++ N+ LE+ V +K L EIV + L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAG------VKDKKVLDEIVETSLKQAAL 149
Query: 1334 LDAPVAED----GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
D V +D S GQ+Q +C+AR + K IL++DE +++D + +++T+ E
Sbjct: 150 WDQ-VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 1390 ETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
T+I V H R +D G ++EYD R + +
Sbjct: 209 LKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 45/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAI------KVHGKKAYV 664
++I KG + + G GSGK++ + I GEI I G I ++ K YV
Sbjct: 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI + K+ + +E+L L
Sbjct: 81 IQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL---------DPAE 127
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q L Q
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL--QEEFKRLQQEL 185
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
KT+++ TH + E AD + +MK+G+I Q G ++++ ++ V +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI----SMIGLQDLRSRLS 1286
T PG+ + GR+GSGK+TLI+ + + P G I+++G + I L + R+
Sbjct: 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 1287 IIPQDPMLF-QGTVRTNLD--------PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
+ Q+ LF +VR NL + S + + E++ HL + R RL
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL--LGRLPGRL---- 132
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ---QTIREETSRC 1394
S G++Q V + R LL R+L++DE A++D I + + E
Sbjct: 133 --------SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GI 183
Query: 1395 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL----------EDNSSSFSKLVAE 1443
++ V+H + V+ D V+VL++G+V ++ ED S +VAE
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAE 243
Query: 1444 F 1444
Sbjct: 244 H 244
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 15/228 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++ NL Y + ++ + G++G G+GK+T ++ L + P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1323
I+G I + R L PQ LF TVR +L L+ EI E + L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL--L 117
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
++ + S G ++ + LA L+ +L+LDE T+ +D A+ I
Sbjct: 118 LRVL-GLTDKANKRA----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172
Query: 1384 QQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQL 1429
I E ++I H + + D + ++ +GK+ SP++L
Sbjct: 173 WDLILEVRKGRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SG----GRILIDGVDI-SMIG 1277
VL ++ FP ++G TGSGK+T ++ L R+ + SG G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTN-LDPLEQHS--DQEIWEVINKCHLAEIVRQD---Q 1331
+ + R R+ ++ Q P F ++ N L + H ++ + + + L E+ D
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
RL D+P G GQ+QL+CLAR L +L+LDE T+++D T I++ IR
Sbjct: 156 RLSDSPFRLSG-----GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1392 SRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQLL 1430
R TVI V H + I + L D G+++E QL
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFD-GRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 42/256 (16%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ N+ + + I+ + + ++G +G GK+TL++ + +PS G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL--------DPLEQHSDQEIWEVI 1318
+DG DI+ + + + ++ Q LF TV N+ + + E +
Sbjct: 64 LDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L D + S GQ+Q V LAR L+ + ++L+LDE +++D
Sbjct: 122 ELVGLEG-------FADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPRQL 1429
+++ ++E T + V H D +D + V+++G++ + +P ++
Sbjct: 171 LREQMRKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
Query: 1430 LEDNSSSFSKLVAEFL 1445
E ++ F VA+F+
Sbjct: 225 YERPATRF---VADFI 237
|
Length = 352 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 38/197 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA----------YVPQSSWIQ 671
G +A+ G G+GK++L + G I SG+ I ++GK YV Q Q
Sbjct: 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQDVDYQ 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGC----ALNQDIE-MWADGDLSVVGERG-INLSGGQ 725
LF S EE+L G A N+ E + D DL + ER ++LSGGQ
Sbjct: 84 --------LFTD----SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQ 131
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTG---THLFKQC-LMGLLSQKTVLYTTHQLE 781
KQR+ +A A+ S D+ IFD+P S +D L ++ G K V+ TH E
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----KAVIVITHDYE 187
Query: 782 FL-DAADLVLVMKDGKI 797
FL D VL++ +G I
Sbjct: 188 FLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 1219 PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMI 1276
P P VLKG+ + + ++G G+GKSTL+ L ++ P G +LIDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1277 GLQDLRSRLSIIPQDP--MLFQGTVRTNLD--PLEQH-SDQEIWEVINKCHLAEIVRQDQ 1331
GL + R R+ ++ QDP LF V ++ PL S+ E+ VR+
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR---------VREAL 112
Query: 1332 RLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
+ A + S G+++ V +A + + +L+LDE TA +D A + +R
Sbjct: 113 TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1390 ETSRCTVITVA 1400
+ + ++
Sbjct: 173 LRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 3e-15
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G A+ G G+GKS+L+ + G SG I V GK+ + + R+
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKE--------VSFASPRD 71
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
A I M + LS G++Q +++ARA+
Sbjct: 72 --------------------ARRAGIAM-------------VYQLSVGERQMVEIARALA 98
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMK 793
N+ + I D+P +A+ LFK ++ L V++ +H+L E + AD V V++
Sbjct: 99 RNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
Query: 794 DGKI 797
DG++
Sbjct: 157 DGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 4e-15
Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------V 1259
IE+EN Y +K +T + ++G +G GK+TL++++ R+ V
Sbjct: 4 IEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 1260 EPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHS------ 1310
E G+I G DI + + + R ++ ++ Q P F ++ N+ H
Sbjct: 62 E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 1311 -DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
D+ + E + K L + V+ + L+ P G S GQ+Q +C+AR L + +++LD
Sbjct: 119 LDRIVEESLKKAALWDEVKSE---LNKP----GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428
E T+++D I++ + E + T++ V H I I D + + G+++EY R+
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
Query: 1429 LLEDNSSSFSKLVAEFL 1445
++E +KL E+L
Sbjct: 232 IVERPK---NKLTEEYL 245
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 4e-15
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 54/254 (21%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E NL V+ +L ++ T PGE + ++G G+GKSTL++AL + P G +
Sbjct: 3 LEARNLSVRLGGRT--LLDDVSLTLRPGEV-VAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTV-------RTNLDPLEQHSDQEIWEVI 1318
++G ++ +L R +++PQ L F TV R D + +
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1319 NKC---HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL------KKKRILVLD 1369
+ HLA R +L S G++Q V LARVL R L+LD
Sbjct: 120 AQVDLAHLAG--RDYPQL------------SGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 1370 EATASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDNDL---------VLVLDEG 1418
E T+++D A + + + R+ VI V H DL +++L +G
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH--------DLNLAARYADRIVLLHQG 217
Query: 1419 KVLEYDSPRQLLED 1432
+++ +P ++L
Sbjct: 218 RLVADGTPAEVLTP 231
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-------Y 663
+ I G VA+ G G+GKS+LL I G E P R++G + A +
Sbjct: 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEE------VLEGCALNQDIEMWADGDLSVVGE 716
V Q + T+ +NI FG +R+ E V E L Q L + +
Sbjct: 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ---------LEGLAD 132
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTV 773
R LSGGQ+QR+ LARA+ V + D+PF A+DA L + L L T
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGVTT 191
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
++ TH Q E L+ AD V+V+ G+IEQ G +++ S V
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFV 234
|
Length = 345 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1263
IE NL V Y V+KG+ P ++G +G GKSTL++ R++E +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1264 -GRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQ----------GTVRTNLDPLEQHS 1310
G + + G +I + ++R + ++ Q P F G L ++
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370
D+ + + K L + V+ RL D P N S GQRQ + +AR L K +IL++DE
Sbjct: 123 DERVEWALKKAALWDEVKD--RLNDYP-----SNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1371 ATASIDTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYD 1424
TA+ID I++ + E T++ V H R+ +D V L GK++E
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARV-----SDYVAFLYLGKLIEVG 230
Query: 1425 SPRQLLED 1432
R++ E+
Sbjct: 231 PTRKVFEN 238
|
Length = 253 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 59/216 (27%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG V + G GSGKS+LL I + I + G K + + + +R+
Sbjct: 21 LTVKKGEVVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINE---LRQ 76
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG------E 716
+ +F Q F + VLE L + E A L VG
Sbjct: 77 KVGMVF-----QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------AHTGTHLFKQ 762
LSGGQ+QR+ +ARA+ N V +FD+P SA+D A G
Sbjct: 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM----- 186
Query: 763 CLMGLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKI 797
T++ TH++ F + AD V+ M DG+I
Sbjct: 187 ---------TMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 5e-15
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 31/236 (13%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IEL+N+ + + L ++ P + GV+G +G+GKSTLI+ + + P+ GR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1266 ILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQG-------TVRTNLD-PLE--QHSDQEI 1314
+L+DG D++ + ++LR R I M+FQ TV N+ PLE EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQI----GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI 117
Query: 1315 WEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
+ + L E+V D+ D A S GQ+Q V +AR L ++L+ DEAT+
Sbjct: 118 KARVTE--LLELVGLSDKA--DRYPA----QLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 1374 SIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1425
++D AT I + +++ T++ + H + V+ D V V+D G+++E +
Sbjct: 170 ALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+E+ N+ Y L+ I+ + GE + +VG +G GKSTL++ + + P+ G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEF-VALVGPSGCGKSTLLRIIAGLERPTSG 59
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTN-LDPLEQH--SDQEIWEV--- 1317
+L+DG + + Q L TV N LE E E
Sbjct: 60 EVLVDGEPV-----TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 1318 -INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
+ L+ L S G RQ V LAR L +L+LDE +++D
Sbjct: 115 LLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRI 1403
T +Q+ + + + TV+ V H I
Sbjct: 164 ALTREQLQEELLDIWRETGKTVLLVTHDI 192
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-15
Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 44/267 (16%)
Query: 1201 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-- 1258
E+ K+ +E+L V Y LKG++ P + ++G +G GKST ++ L R+
Sbjct: 39 EFDGDAKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96
Query: 1259 ------VEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQ 1308
++ G + +DG DI G L +LR R+ ++ Q P F ++R N+ P +
Sbjct: 97 RIKAARID---GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RK 152
Query: 1309 HSDQEIWEVINKCHLAEIVRQDQR----------LLDAPVAED-----GEN---WSVGQR 1350
H D IN LA ++ +D + L A + ++ +N S GQ+
Sbjct: 153 HGD------INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ 206
Query: 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV--ID 1408
Q +C+AR L ++++DE +++D + I+ I E TV+ V H + I
Sbjct: 207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266
Query: 1409 NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
+ + L G+++EYD ++ E+ S
Sbjct: 267 DQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 6e-15
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE N+ Y L GI + + + +VG +G+GKSTL++ +++ P+ G I
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1268 IDGVDISMIGLQD-----LRSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVI 1318
++G D+S L+ LR ++ ++ QD +L V N+ LE +EI + +
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
E+V + P S G++Q V +AR ++ IL+ DE T ++D
Sbjct: 118 PA--ALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKV 1420
T I +++ T + VA ++D V+ L+ GK+
Sbjct: 171 TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 29/237 (12%)
Query: 1208 IELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL +Y L ++ + + ++G GSGKST ++ + ++E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQH--SDQEIWEVINKC 1321
+IDG ++ + D+R ++ ++ Q+P F G TV ++ LE +E+ E +N
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN-- 122
Query: 1322 HLAEIV-------RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E+V R+ RL S GQ+Q V +A + + +I++LDEAT+
Sbjct: 123 EALELVGMQDFKEREPARL------------SGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 1375 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+D + +TI+ + + TVI++ H + V +D VLV+ G+V +PR+L
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 9e-15
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG--------------EIPRISGAAIKVHGKK-AYV 664
I KG + + G GSGKS+L +ILG ++ ++S K+ K+ V
Sbjct: 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 665 PQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
Q SS TI E I + GK ++ +E + L + + V+
Sbjct: 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV--LLLLVGVGL----PEEVLNR 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQ 770
LSGGQ+QR+ +ARA+ N + I D+P SA+D + ++ LL
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV-----QAQILDLLKKLQEELG 196
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
T+L+ TH L + AD V VM GKI + G
Sbjct: 197 LTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 1208 IELENLLVQYNPTLPMV--LKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I + L ++ V + G++ PGE G++G G+GK+T ++ L ++EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEV-TGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTN---------LDPLEQHSDQEI 1314
+DG D+ + R RL + L+ T R N L E +
Sbjct: 61 FATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT--ARL 117
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E+ ++ + E LLD V +S G RQ V +AR L+ +L+LDE T
Sbjct: 118 EELADRLGMEE-------LLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTG 166
Query: 1375 IDTATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVL 1421
+D +++ IR+ + ++ H + V D V+VL G+V+
Sbjct: 167 LDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 32/240 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ ENL +Y V+ G++ + GE +G++G G+GK+T + +V+P G+I
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEI-VGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1267 LIDGVDISMIGLQDLRSRLSII--PQDPMLFQG-TVRTNLD-PLEQHSD------QEIWE 1316
L+DG DI+ + + R+RL I PQ+ +F+ TV N+ LE +++ E
Sbjct: 58 LLDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
++ + H+ + + L S G+R+ V +AR L + L+LDE A +D
Sbjct: 117 LLEEFHITHLRKSKASSL-----------SGGERRRVEIARALATNPKFLLLDEPFAGVD 165
Query: 1377 TATDNVIQQTIREETSR--CTVIT--VAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
IQ+ I+ R +IT ++ D ++ EGKVL +P ++ +
Sbjct: 166 PIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDR--AYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 637 SSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQSSWI-QTGTIRENILF 681
S+LL I G + SG I + G+ V Q + T+REN+ F
Sbjct: 1 STLLKLITGLLQPTSGT-ILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 682 G--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
G + EE LE L ++ E LSGGQKQR+ +ARA+
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLD----------REPVGTLSGGQKQRVAIARALLKKP 109
Query: 740 DVYIFDDPFS 749
+ + D+P +
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWI 670
KG + G G+GK++ L + GE+ I+G +I+ K A Y PQ +
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86
Query: 671 QTG-TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
T+RE++ F ++++ E +L L A+ +R L
Sbjct: 87 FDELTVREHLRFYARLKGLPKSEIKEEV-ELLLRVLGLTD----KAN-------KRARTL 134
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGG K+++ LA A+ V + D+P S +D + ++ ++ + ++++ TTH ++
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMD 193
Query: 782 FLDA-ADLVLVMKDGKI 797
+A D + +M DGK+
Sbjct: 194 EAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 54/218 (24%), Positives = 108/218 (49%), Gaps = 17/218 (7%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPM 1293
++G +GSGKST ++ L R++EP+ G+I IDG +I +L R ++ ++ Q
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81
Query: 1294 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG--ENWSVGQRQ 1351
LF T L + W + E + +L+ E + S G +Q
Sbjct: 82 LFPH--MTILQNTSLGPELLGW---PEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQ 136
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--EETSRCTVITVAHRIPTVID- 1408
V LAR L + IL++DEA +++D + +Q ++ + T + T++ + H + I
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196
Query: 1409 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446
D ++++ G++++ +P ++L + ++ + V EF+
Sbjct: 197 GDRIVIMKAGEIVQVGTPDEILRNPANEY---VEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 23/231 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I EN+ Y P L+ ++ P + + + G +G+GKSTL++ ++ P+ G+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1268 IDGVDISMIGLQD---LRSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVINK 1320
++G D+S + ++ LR ++ ++ QD +L TV N+ PL +EI +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV-- 118
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
+ ++V + P G G++Q V +AR ++ + +L+ DE T ++D
Sbjct: 119 SEVLDLVGLKHKARALPSQLSG-----GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173
Query: 1381 NVIQQTIREETSR--CTVITVAHRIPTVIDNDL---VLVLDEGKVLEYDSP 1426
I + EE +R TV+ H + V N + VL L++G+++ +S
Sbjct: 174 WEIMRLF-EEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 42/244 (17%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQD 1280
+ GI+ T + +G+VG +GSGKSTL AL R++ G I DG DI S ++
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRP 360
Query: 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE--VINKCHLAEIVRQDQRLLDA-- 1336
LR R+ ++ QDP +L P Q I E +++ L+ R DQR+++A
Sbjct: 361 LRRRMQVVFQDPY-------GSLSP-RMTVGQIIEEGLRVHEPKLSAAER-DQRVIEALE 411
Query: 1337 PVAEDGE-------NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
V D +S GQRQ + +AR L+ K +++LDE T+++D + +Q + +
Sbjct: 412 EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQAQVLD 467
Query: 1390 ETSRCTVITVAHRIP-TVIDNDL---------VLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+ H + I +DL V+V+ +GK++E + + +++
Sbjct: 468 LLRD---LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524
Query: 1440 -LVA 1442
L+A
Sbjct: 525 ALLA 528
|
Length = 534 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 44/205 (21%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1280
+LK ++ PGE ++G +G+GKSTL+ AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGEL-TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRS 79
Query: 1281 LRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
R + +PQD +L TVR L A++ + L
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-----------------FAAKL----RGL------ 112
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1398
S G+R+ V +A L+ +L LDE T+ +D+++ + +R T+I
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1399 VAHRIPTVIDN--DLVLVLDEGKVL 1421
H+ + I D +L+L +G+V+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+E + + VL+ I + + + ++G +G GKSTL++ + + +P+ G +
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH------SDQEIWEVI 1318
L+DG + + + Q+ L TV N+ LE + + E++
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
LA D + S G RQ V +AR L + ++L+LDE ++D
Sbjct: 116 ELVGLAG-------FEDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEG-----KVLEYDSPR 1427
T +Q + E +R TV+ V H + + D V+VL + LE D PR
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPR 221
|
Length = 248 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTGT 674
I G VA+ G G+GKS+LL + G + SG+ ++ K + Q G
Sbjct: 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82
Query: 675 I--------R----ENILFGKDMRQSFY---------EEVLEGCALNQDIEMWADGDLSV 713
I R EN+L G+ R+S + EE A + + + L
Sbjct: 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----LDK 137
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD---AHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + + D+P +++D + L K+
Sbjct: 138 AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE--G 195
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ + HQ++ + AD ++ +KDG+I
Sbjct: 196 ITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 4e-14
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKV----HGKKAY--VPQS 667
I G +V + G GSGKS+LLS+ L G+I +I G + +KA+ +PQ
Sbjct: 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKAFGVIPQK 85
Query: 668 SWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+I +GT R+N+ +GK + ++ V E L IE + V+ + G LS G K
Sbjct: 86 VFIFSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
Q + LAR+V S + + + D+P + +D T + ++ L + TV+ + H++E +
Sbjct: 145 QLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVILSEHRIEAMLEC 203
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ 846
LV+++ K+ Q + L+ +++ +Q + L K + Q+
Sbjct: 204 QRFLVIEENKVRQYDSIQKLLNEKS--HFKQAISPSDRLKLFPRRNSSKSKRKPRPQIQA 261
Query: 847 ITEE 850
+ EE
Sbjct: 262 LQEE 265
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-------KVHGKK--------AYV 664
I +G VA+ G G+GKS+LL S+ G + SG + K+ GK+ +
Sbjct: 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMI 86
Query: 665 PQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERG 718
Q + + ++ EN+L G+ S + + G +D D G L +R
Sbjct: 87 FQQFNLVPRLSVLENVLLGRLGYTSTWRSLF-GLFSKEDKAQALDALERVGILDKAYQRA 145
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQKT 772
LSGGQ+QR+ +ARA+ + + D+P +++D + +M +L T
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK-----VMDILKDINQEDGIT 200
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
V+ HQ++ AD ++ +K G+I G +L + E+
Sbjct: 201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243
|
Length = 258 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV------PQSSWIQ 671
+ + G VA+ G G+GKS+LL+ I G I SG+ IKV+ + P S Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS-IKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 672 TG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
T+R+NI G + + + + D +R LSGG
Sbjct: 78 ENNLFAHLTVRQNIGLG--LHPGLKLNAEQQEKVVDAAQQVGIADYL---DRLPEQLSGG 132
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVLYTTH 778
Q+QR+ LAR + + + + D+PFSA+D L ++ ++ L+ Q+T+L TH
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVTH 187
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGK 802
L A A + V+ GKI+
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 6e-14
Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 55/371 (14%)
Query: 1104 FHNCGTMEWLCLRINLLFNFAFFLVLIIL---VTL-PRSAIDPSLA----GLAATYGLNL 1155
H GT W+C F + LI VT+ + +D A L L
Sbjct: 539 LHAVGTFTWVCT--------PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPL 590
Query: 1156 NVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1215
N+L VI ++ +S++R+ F + P I+ P +S I + N
Sbjct: 591 NILPM-VISSIVQAS---VSLKRLRIFLSHEELEPDSIERRTIKPGEGNS--ITVHNATF 644
Query: 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275
+ LP L GIT + P + VVG+ G GKS+L+ AL ++ G + + G
Sbjct: 645 TWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699
Query: 1276 IGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHL---AEIVRQ 1329
++ +PQ + ++R N+ L + Q +V+ C L EI+
Sbjct: 700 --------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQ---QVLEACALLPDLEILPS 748
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT-ATDNVIQQTIR 1388
R + E G N S GQ+Q V LAR + I + D+ +++D ++ + I
Sbjct: 749 GDR---TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805
Query: 1389 EE--TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446
E T I V H I + D+++V+ GK+ E S ++LL+ + + AEFLR
Sbjct: 806 PEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA-----FAEFLR 860
Query: 1447 RTSKSNRNRDL 1457
+ + L
Sbjct: 861 TYAPDEQQGHL 871
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-14
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-LGEIP---RISGAAIKVHGKKAYVPQSSWIQTG 673
+++ G VA+ G GSGK++LL I L E P I I + ++ Q I+
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ- 82
Query: 674 TIRENILFGKDMRQSF--------YEEVLEGCAL-----NQDIEMWADGDLSVVGERGIN 720
+R+++ F + Q+F E ++EG + ++ A L+ VG G
Sbjct: 83 -LRQHVGF---VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-TGTHLFKQCLMGLLSQK-T 772
LSGGQ+QR+ +ARA+ +V +FD+P SA+D G L + L +K T
Sbjct: 139 TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL--NTIRQLAQEKRT 196
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
++ TH++ F D AD + M G+I + G + L AD RQ
Sbjct: 197 MVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQ 242
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 20/232 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE +L Y+ + L I P +I V+G G+GKSTL + +++P+ G +L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE--VINKC 1321
I G I+ ++++R + ++ Q+P +F TV ++ P+ D+E V +
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 1322 HLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
H+ + + L D P + S G+++ V +A V+ + ++LVLDE TA +D
Sbjct: 123 HMLGL----EELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 1381 NVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
+ + + ET TVI H++ V + D + V+D+G+++ Y + ++
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
L+N+ ++ + +L + T K ++G +GSGKSTL+ + + + G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1270 GVDISMIGLQD----LRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVINKC 1321
G + + + R +L + Q+ L + TV NLD L+ S +E E +
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
E V + + L + E S G++Q V LAR +LK +++ DE T S+D +
Sbjct: 119 --LEKVGLNLK-LKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 1382 VIQQTIREETSRC-TVITVAH 1401
+ + E T+I V H
Sbjct: 172 EVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 7e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 1241 VGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMIGLQD--LRSRLSIIPQDPM 1293
+G +G GKST ++ R+ + G + IDG+D+ + LR+++ ++ Q P
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96
Query: 1294 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL------LDAPVAEDGENWSV 1347
F ++ N+ + + NK L EIV + L + + S
Sbjct: 97 PFPKSIYDNV----AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152
Query: 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI 1407
GQ+Q +C+AR + K +L++DE +++D NVI+ I+E T+I V H +
Sbjct: 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK 212
Query: 1408 D-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+D V G+++EY++ +++ ++ SS +K
Sbjct: 213 KVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTK 245
|
Length = 251 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 25/207 (12%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
LK ++ P ++IG++GR G+GKSTL++ L + P G + + G S++GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1284 RLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCH-LAEIVRQDQRLLDAPVA 1339
+P L T R N+ L S +EI E I++ +E+ +D PV
Sbjct: 93 -GGF---NPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL----GDFIDLPV- 140
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC-TVIT 1398
+ +S G + + A + IL++DE A D A Q+ +RE + TVI
Sbjct: 141 ---KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197
Query: 1399 VAHRIPTVIDN-DLVLVLDEGKVLEYD 1424
V+H ++ D LVL++GK+
Sbjct: 198 VSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 31/267 (11%)
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPIT----EPTSKASDVAIDIEAGEYAWDAREENFKK 609
S I + + L + + KP+ P + + ++ E +D K
Sbjct: 282 SRIKRLE-KLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKD 340
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQ-- 666
+ +I +G ++A+ G G+GKS+LL + GE+ +SG K Y Q
Sbjct: 341 LS------FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394
Query: 667 SSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T+ E + D + L + + LSGG+
Sbjct: 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGE 444
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD 784
K R+ LA+ + ++ + D+P + +D + L LL + TVL +H FLD
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEGTVLLVSHDRYFLD 500
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQ 810
A + +++D E G YED + +
Sbjct: 501 RVATRIWLVEDKVEEFEGGYEDYLEQK 527
|
Length = 530 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 7e-14
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP----------QS-SWIQTGTIRE 677
G G GK++LL + G + +I + G+ VP QS + T+ E
Sbjct: 3 GPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEE 61
Query: 678 NILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
N+ FG MR+ E VLE L Q E + LSGGQ+QR+ LAR
Sbjct: 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFAD--------RKPHQLSGGQQQRVALAR 113
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAADLVL 790
A+ + + D+P SA+D + L + Q T ++ TH Q E + +D +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKL-RDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 791 VMKDGKIEQSGKYEDLIADQNSELV 815
+M+ GKI Q G E++ + + V
Sbjct: 173 IMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 7e-14
Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 47/221 (21%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS----SWIQ 671
GSGKS+L+ + I G I V GK + V QS
Sbjct: 64 GSGKSTLVRLLNRLIEPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR- 121
Query: 672 TGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
T+ EN+ FG K R+ E LE L +AD E LSGG
Sbjct: 122 --TVLENVAFGLEVQGVPKAEREERALEALELVGLEG----YAD---KYPNE----LSGG 168
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQL-E 781
+QR+ LARA+ ++ D+ + D+ FSA+D T + + L+ L + +KT+++ TH L E
Sbjct: 169 MQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE-LLELQAKLKKTIVFITHDLDE 227
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L D + +MKDG+I Q G E+++ + ++ VR +
Sbjct: 228 ALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 8e-14
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 41/244 (16%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I++ +L V++ T VL G+ + +G+VG G+GK+TL++A+ + P+ G +L
Sbjct: 4 IDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVR-----------TNLDPLEQHSDQEIW 1315
+ G D+ + + R++ +PQD L F+ VR + D + +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
+ + +A+ D PV S G+RQ V LAR L + +L+LDE TAS+
Sbjct: 122 RAMERTGVAQFA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 1376 DTATDNVIQQTIRE--------ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSP 1426
D I +R + + T + H + D +++L +G+V P
Sbjct: 171 D------INHQVRTLELVRRLVDDGK-TAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223
Query: 1427 RQLL 1430
+L
Sbjct: 224 ADVL 227
|
Length = 402 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 39/232 (16%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ NL V Y + +L+G++ P + V+GR G GK+TL++ L ++ G I +
Sbjct: 2 EVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1269 DGVDISMIGLQDLRSRLSI--IPQDPMLF-QGTVRTNL----DPL---EQHSDQEIWEVI 1318
DG DI+ + + R+R I +PQ +F + TV NL L + EI+E+
Sbjct: 60 DGEDITKLPPHE-RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF 118
Query: 1319 NKCHLAEIVRQDQRLLDAPVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
PV ++ G + S GQ+Q + +AR L+ + ++L+LDE T
Sbjct: 119 ------------------PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
Query: 1374 SIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422
I + I + IR + ++ V + + D V++ G+V+
Sbjct: 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + G A+ G G+GKS+L+ + G P SG I + GK A
Sbjct: 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIAT 87
Query: 664 VPQ-SSWIQTGTIRENILFG------------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
V Q S + ++ ENI G K MR+ E+L L+ D +
Sbjct: 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-ARELLARLGLDIDPD------ 140
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
++VG +LS Q+Q +++ARA+ ++ V I D+P +A+ LF + L +Q
Sbjct: 141 -TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQ 194
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN-SELVRQM 818
++Y +H+L E + AD + V++DG++ + A+ + ELVR M
Sbjct: 195 GVAIIYISHRLDEVFEIADRITVLRDGRVVGTR---PTAAETSEDELVRLM 242
|
Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 47/237 (19%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS-RLSIIPQDPMLF 1295
++G +GSGKSTL++ + R++EP+ G++LIDG DI+ + L++LR ++S++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1296 -QGTVRTNLD-PLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN-----WSV 1347
TV N+ LE Q + E + L+ E E+ S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAERE-----------ERAAEALELVGLEGWEHKYPDELSG 163
Query: 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE------TSRCTVITVAH 1401
G +Q V LAR L IL++DEA +A D +I++ +++E + T++ + H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1402 ------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1452
R+ D + ++ +G++++ +P ++L + ++ + V EF R ++
Sbjct: 220 DLDEALRL-----GDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFFRGVDRAK 268
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-13
Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 30/257 (11%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+ G I +++L V Y VL ++ + + ++G++G GK+TL++A+ V+ +G
Sbjct: 2 ACGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1264 --GRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINK 1320
GRI I D++ + L+++ Q+ LF V N+ + K
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM------PK 111
Query: 1321 CHLAEIVRQDQRL--LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+AE V +L L A S G +Q + +AR + + +L+LDE +++D
Sbjct: 112 ADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 1379 TDNVIQQTIREETSR-------CTVITVAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
I+ +REE + T++ V H + + D ++ +G++ + P+ L
Sbjct: 172 ----IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 1431 EDNSSSFSKLVAEFLRR 1447
+ + F AEFL
Sbjct: 228 DAPADGF---AAEFLGA 241
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 20/205 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ NL M+ +G++ T GE V G G GK+TL++ L ++ P G +
Sbjct: 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQ-VTGPNGIGKTTLLRILAGLLRPDSGEV 57
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCHL 1323
+G ++ + R+ L + + + + NL + + + I + + L
Sbjct: 58 RWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL 117
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
D P A+ S GQ++ + LAR+ L + + +LDE T ++D A ++
Sbjct: 118 TGFE-------DLPAAQ----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 1384 QQTIREETSR--CTVITVAHRIPTV 1406
+R +R ++T + V
Sbjct: 167 AGLLRAHLARGGIVLLTTHQDLGLV 191
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 50/233 (21%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
G +++ GS GSGKS+ L I E P S +I+V+G++ I+ ++ L
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEE--------IRLKRDKDGQL 80
Query: 681 FGKDMRQ---------------------SFYEEVLE------GCALNQDIEMWADGDLSV 713
D RQ + E V+E G + + IE A+ L+
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER-AEKYLAK 139
Query: 714 VG--ERG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
VG E+ +LSGGQ+QR+ +ARA+ +V +FD+P SA+D + K +M
Sbjct: 140 VGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQD 197
Query: 768 LSQ--KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L++ +T++ TH++ F D + V+ + GKIE+ G E + + S ++Q
Sbjct: 198 LAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQ 250
|
Length = 256 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 28/147 (19%)
Query: 674 TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQR 728
T+ EN+ FG M+++ E V+E + Q L +R LSGGQ+QR
Sbjct: 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQ---------LEEFAQRKPHQLSGGQQQR 152
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQK---TVLYTTH-QLEF 782
+ +ARAV + V + D+ SA+D L KQ L L +K T ++ TH Q E
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALDY----KLRKQMQNELKALQRKLGITFVFVTHDQEEA 208
Query: 783 LDAADLVLVMKDGKIEQSGK----YED 805
L +D ++VM+DG+IEQ G YE+
Sbjct: 209 LTMSDRIVVMRDGRIEQDGTPREIYEE 235
|
Length = 375 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG---------KKAY--VPQS 667
+ KG V + G G GK++LL I G E + I G K+ Y V QS
Sbjct: 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYGIVFQS 84
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
+ T+ +NI +G R EV + + L +VG G
Sbjct: 85 YALFPNLTVADNIAYGLKNRGMGRAEV------AERVAEL----LDLVGLPGSERKYPGQ 134
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKTVLYTT 777
LSGGQ+QR+ LARA+ ++ + + D+P SA+DA HL + + L L T++ T
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-RTEIRQLQRRLGVTTIMVTH 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSG 801
Q E L AD ++VM G IEQ G
Sbjct: 194 DQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-13
Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 16/222 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++ N + L L I P + +VG+ G GKS+L+ A+ ++ G++
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 1268 IDGVDISMIGLQDLRSR----LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
+ S + RSR ++ Q P L TV N+ + Q V + C L
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL 119
Query: 1324 AEIVRQDQRLL----DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT-A 1378
+ D LL + E G N S GQRQ +C+AR L + I+ LD+ +++D
Sbjct: 120 ----QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEG 1418
+D+++Q+ I + + + T++ V H++ + D ++ + +G
Sbjct: 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL + VLKGI T GE + ++G +GSGKSTL++ + + EP G I
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEV-VVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1267 LIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
+IDG+ + + +LR ++ M+FQ + NL P H V+ LA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVG------MVFQ---QFNLFP---HLT-----VLENITLA 100
Query: 1325 EIVRQDQ----------RLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLD 1369
I + LL+ D + S GQ+Q V +AR L ++++ D
Sbjct: 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
Query: 1370 EATASIDTATDNVIQQTIREET-SRCTVITVAH 1401
E T+++D + +++ T++ V H
Sbjct: 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTH 193
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSS-------------ILGE-IPRISGAAIKVHGKK-- 661
+ I KG + G GSGKS+ + I GE I + S ++ +K
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 662 AYVPQS-SWIQTGTIRENILFGKDM----RQSFYEEVLEGCALNQ-DIEMWADGDLSVVG 715
V Q + TI +N G ++ Q E+ LE L +E +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALE--LLKLVGLEEYEH------- 124
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKT 772
LSGG +QR+ LARA+ + D+ + D+ FSA+D + K+ L QKT
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKT 182
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+++ TH L E + D +++MK G+I Q G ++++ + +E V +
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEE 228
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-13
Identities = 106/477 (22%), Positives = 187/477 (39%), Gaps = 45/477 (9%)
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
+L I + P+ + S+R+L ++D + RL L A+I L
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAA 140
Query: 1021 LMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA--PILHHFSESIAGATT 1078
++ + ++F L +V + ++IW ++ AR M R+ + + + + G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIW--GGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKE 198
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
+ N+E + ++ I D H +R N A I+L+ L
Sbjct: 199 LT-LNRERAEYVHNNLYIPDAQEYRHH--------IIRANTFHLLAVNWSNIMLLGLIGL 249
Query: 1139 ----AIDPSLAG--LAATYGLNLNVLQA---WVIWNLCNVENKMISVERILQFTNIPSEA 1189
A+ A +AAT L L L+ + L + ++ +I + P +A
Sbjct: 250 VFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309
Query: 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1249
+ P+W +EL N+ Y + I T + + ++G GSGKS
Sbjct: 310 DF--PRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKS 363
Query: 1250 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309
TL L + +P G IL+DG +S L+D R S + D LF + Q
Sbjct: 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423
Query: 1310 SDQ--EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367
++ + E+ +K L D R + + S GQ++ + L LL+++ ILV
Sbjct: 424 IEKWLQRLELAHKTSL-----NDGRFSNLKL-------STGQKKRLALLLALLEERDILV 471
Query: 1368 LDEATASIDTATDNVIQQTIREETSRC--TVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
LDE A D A Q + T+ ++H I D +L + G++ E
Sbjct: 472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---- 1258
S K+E L Y L I+ F + ++G +G GKST ++ L R+
Sbjct: 2 ASPPKMEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 1259 -VEPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
G IL+DG +I + + +LR R+ ++ Q P F ++ N+ +
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVN 114
Query: 1316 EVINKCHLAEIVRQDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
V +K +LAE V + R L D + E S GQ+Q +C+AR L + +L++D
Sbjct: 115 GVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAH 1401
E +++D I++ I E +R T+I V H
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY-VPQSSWIQ----T 672
++I G V + G GSGK++LL+ I G + + ++KV G++ Y + +Q
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQEGSLKVLGQELYGASEKELVQLRRNI 84
Query: 673 G------------TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLS 712
G T R+N+ +++ + +LE L ++ +
Sbjct: 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH---- 140
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
NLSGGQKQR+ +ARA+ + + D+P +A+D+ +G + + LM L+++
Sbjct: 141 -------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE--LMQKLAREQ 191
Query: 772 --TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T+L TH LD AD ++ M+DGK+
Sbjct: 192 GCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 61/217 (28%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+EL + ++ L G++ + GE ++G G+GKSTL++ L + +P G
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEV-HALLGENGAGKSTLMKILSGLYKPDSGE- 56
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
+L G + P + I +
Sbjct: 57 --------------------------ILVDGKEVSFASPRDAR-RAGI----------AM 79
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNVIQQ 1385
V Q L SVG+RQ+V +AR L + R+L+LDE TA++ A + + +
Sbjct: 80 VYQ----L-----------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-K 123
Query: 1386 TIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1420
IR ++ VI ++HR+ V + D V VL +G+V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1298
++G +G GK+TL++ L +P G I++DG D++ + LR ++++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 1299 VRTNLD-PLEQHS------DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
V N+ L+ + E + L E + L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--EETSRCTVITVAHRIPTVID- 1408
V LAR L+ K +IL+LDE +++D + +Q ++ +E T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1409 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
+D + ++ +GK+ + +P ++ E+ ++ F VA F+
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF---VARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 23/207 (11%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VL I+ + G +G G+GK+T ++ + +++P G I DG +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALR 72
Query: 1284 RLSIIPQDPMLFQG-TVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
R+ + + P + T R NL L + I EV++ L + ++ +
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK------- 125
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1398
+S+G +Q + +A LL +L+LDE T +D +++ I + TV+
Sbjct: 126 ----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 1399 VAH---RIPTVIDNDLVLVLDEGKVLE 1422
+H I V D + ++++GK++E
Sbjct: 182 SSHLLSEIQKVADR--IGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY--------VPQSSW 669
+ G KVA+ G GSGKS++L IL + I I+V G++ Y + +
Sbjct: 21 FSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDI-----EMWADGDLSVVG---- 715
+R I F ++ + V E L + E A L +VG
Sbjct: 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK 139
Query: 716 --ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-----MGLL 768
LSGGQ+QR+ +ARA+ V +FD+ SA+D L + L +
Sbjct: 140 ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP----ELVGEVLNVIRRLASE 195
Query: 769 SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
T+L TH++ F + AD V G+I + GK +++ E R
Sbjct: 196 HDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTR 244
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 14/215 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMIGLQDL 1281
VLKG+ F G+VG G GKSTL L ++ P G +L G +D S GL L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW----EVINKCHLAEIVRQDQRLLDAP 1337
R +++ + QDP Q T++D S + + E+ + A + Q P
Sbjct: 76 RQQVATVFQDPE--QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP 133
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT-V 1396
+ + S GQ++ V +A L+ + R L+LDE TA +D A + IR ++ V
Sbjct: 134 I----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHV 189
Query: 1397 ITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
I +H I + + +D V VL +G++L + +P ++
Sbjct: 190 IISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
Length = 271 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 33/196 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVP 665
K+ G K+ + G G+GKS+L+ ++ + G I++ G +P
Sbjct: 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTIIP 88
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
Q + +GTIR N+ D + +E + G AL V E G+NLS GQ
Sbjct: 89 QDPTLFSGTIRSNL----DPFDEYSDEEIYG-ALR-------------VSEGGLNLSQGQ 130
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+Q + LARA+ V + D+ +++D T L ++ + + T+L H+L +
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAHRLRTIID 189
Query: 786 ADLVLVMKDGKIEQSG 801
D +LVM G++++
Sbjct: 190 YDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 35/231 (15%)
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
L V LP I E G+ G +G+GKSTL++ + + +P GG I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1272 DISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQHSDQEIWEVINK 1320
L D R ++++ PQ ++FQ VR NL L++ ++E +
Sbjct: 60 V-----LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----R 109
Query: 1321 CHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+ E++ LL+ A+ S G++Q V LAR L + +L+LDE +++D A
Sbjct: 110 ISVDELLDLLGLDHLLNRYPAQ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 1379 TDNVIQQTIREETSR--CTVITVAH---RIPTVIDNDLVLVLDEGKVLEYD 1424
+ +++ VI V H + D ++V+++G++
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR--IVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVR 1300
G G+GKSTL L R+ G+I + G D+ L RL ++ Q P L +VR
Sbjct: 34 GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVR 92
Query: 1301 TNLD---PLEQHSDQEIWEVINKCHLAEIVRQD--QRLLDAPVAEDGENWSVGQRQLVCL 1355
NL L S E I + R +R D V E + G R+ V +
Sbjct: 93 QNLRYHAALHGLSRAEARARIA----ELLARLGLAERA-DDKVRE----LNGGHRRRVEI 143
Query: 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVL 1413
AR LL + +L+LDE T +D A+ I +R +V+ H + + +D ++
Sbjct: 144 ARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLV 203
Query: 1414 VLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
VL G+VL + +L ++ + L A FL T
Sbjct: 204 VLHRGRVLADGAAAELR--GATGGADLEAAFLALT 236
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-13
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 62/233 (26%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKK--------------- 661
+ G + + G GSGKS+L +++G E RI+ + + G+
Sbjct: 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGK 91
Query: 662 --AYVPQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A + Q +S TI + I L GK R + +E L
Sbjct: 92 RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL--------------L 137
Query: 712 SVVG----ERGIN----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
VG ER LSGG +QR+ +A A+ + I D+P +A+D T +
Sbjct: 138 EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----QAQ 192
Query: 764 LMGLLSQ------KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIAD 809
++ LL VL+ TH L + + AD V+VM G+I ++G E+++++
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 19/215 (8%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E ENL + + ++ T GE + G G+GK+TL++ L ++ P G
Sbjct: 2 MLEAENLSCERGER--TLFSDLSFTLNAGEALQ-ITGPNGAGKTTLLRILAGLLRPDAGE 58
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL----DPLEQHSDQEIWEVINKC 1321
+ G I + ++ L + Q + + T NL + IWE + +
Sbjct: 59 VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV 118
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
LA L D PV S GQ++ V LAR+ L + +LDE ++D
Sbjct: 119 GLA-------GLEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1416
++ + ++ ++ + P I + + LD
Sbjct: 168 LLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 6e-13
Identities = 60/231 (25%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 1208 IELENLLVQYNPTLPM-VLKGITCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSG 1263
+E+ENL+ +Y + L G++ + + + ++G+ GSGKST LI LF E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE--- 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVINKC 1321
G++ IDG ++ + +LR ++ ++ Q+P TV ++ ++ E+I +
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
A + +LD E S GQ+Q V +A ++ + I++LDE+T+ +D
Sbjct: 122 DEALLAVN---MLDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 1382 VIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
I + I E E + TV+++ H + +D +LV+ G++++ +P +L
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 7e-13
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRV---VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
K ++G +G GKST ++ R+ + G + I+G D+ + LR + ++ Q P
Sbjct: 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP 88
Query: 1293 MLFQGTVRTN------LDPLEQHSDQE---IWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
+F ++ N L + ++ D+E + + + K L E V+ +L +A G
Sbjct: 89 NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD--KLKQNALALSG- 145
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
GQ+Q +C+AR L K ++L+LDE T+++D + VI++ ++E + ++I V H +
Sbjct: 146 ----GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
Query: 1404 PT---VIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
V D L G+++E+ ++ E+ +K
Sbjct: 202 QQGKRVADYTAFFHL--GELIEFGESKEFFENPKQEKTK 238
|
Length = 246 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GE K+ + G +G GKSTL++ + ++ P+ G +L +G DIS + + R ++S Q P
Sbjct: 32 AGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
Query: 1293 MLFQGTVRTNLD-PLE---QHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWS 1346
LF TV NL P + Q D I+ L ++ R +L +AE S
Sbjct: 91 TLFGDTVYDNLIFPWQIRNQQPDPAIF-------LDDLERFALPDTILTKNIAE----LS 139
Query: 1347 VGQRQLVCLARVLLKKKRILVLDEATASID----TATDNVIQQTIREETSRCTVITVAH 1401
G++Q + L R L ++L+LDE T+++D + +I + +RE+ V+ V H
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--NIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 8e-13
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS- 667
I G VA+ G GSGK++LL I G + SG I+ HG +V Q
Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDI----EMWADGDLSVVGER-GIN 720
+ + T+ +NI FG + R+ E A+ + EM L+ + +R
Sbjct: 84 ALFRHMTVFDNIAFGLTVLPRR----ERPNAAAIKAKVTQLLEMV---QLAHLADRYPAQ 136
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQKQR+ LARA+ + + D+PF A+DA L ++ L L + T ++ TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL-RRWLRQLHEELKFTSVFVTH 195
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E ++ AD V+VM G IEQ+G + + + + V
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFV 233
|
Length = 353 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-13
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---KVHGKKAYVPQ--------S 667
++ G A+ G G+GK++LLS + GE P SG + GK + + S
Sbjct: 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112
Query: 668 SWIQ-----TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NL 721
S + T+R+ +L G Y+E L L + + +R +L
Sbjct: 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL 172
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTH 778
S G+++R+ +ARA+ + ++ I D+P +D L L + +L+ TH
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQLLNRLEELAASPGAPALLFVTH 231
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGK 802
E L++K+G++ GK
Sbjct: 232 HAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 29/206 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP----------QS 667
I +G + G G GK++LL I G E P + I + GK +P Q+
Sbjct: 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQN 80
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQ 725
+ T+ ENI FG +++ E+ E A E L R + LSGGQ
Sbjct: 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVA-----EALDLVQLEGYANRKPSQLSGGQ 135
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH-QL 780
+QR+ +ARA+ + V + D+P A+D + + L L QK T ++ TH Q
Sbjct: 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-LKRL--QKELGITFVFVTHDQE 192
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDL 806
E L +D + VM GKI+Q G E++
Sbjct: 193 EALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-12
Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 29/222 (13%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS--RLSIIPQDPMLFQG 1297
++G +GSGKST+++ L R++EP+ G++LIDGVDI+ I +LR R I M+FQ
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI----AMVFQS 114
Query: 1298 TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR--LLDAPVAEDGENW--------SV 1347
L P D + + LA I +++R LDA EN+ S
Sbjct: 115 FA---LMPHMTVLDNTAFGM----ELAGINAEERREKALDALRQVGLENYAHSYPDELSG 167
Query: 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC--TVITVAHRIPT 1405
G RQ V LAR L IL++DEA +++D +Q + + ++ T++ ++H +
Sbjct: 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227
Query: 1406 VID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446
+ D + ++ G+V++ +P ++L + ++ + V F R
Sbjct: 228 AMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY---VRTFFR 266
|
Length = 400 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 49/241 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW------IQTG 673
+ +G + + G GSGKS+L + G +P S +I G+ + IQ
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 674 ------------TIRENI--------LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
T+ + + R++ E+LE L +
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF---------- 422
Query: 714 VGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-----QCLMGL 767
+R + LSGGQ+QR+ +ARA+ + I D+P SA+D + Q +GL
Sbjct: 423 -LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
T L+ +H L + AD V VM DG+I + G E + + R++ A D
Sbjct: 482 ----TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVPKPD 537
Query: 827 Q 827
Sbjct: 538 P 538
|
Length = 539 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 46/219 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWI--- 670
+ KG + G G+GKS+L+ I G E P + G + + K I
Sbjct: 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87
Query: 671 -------QTGTIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ T+ EN+ K + E+LE L + +
Sbjct: 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA-------- 139
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFK--QCLMGLLSQ 770
LSGGQKQR+ +ARA+ +N V + D+ SA+D T T L + +GL
Sbjct: 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-TQSILALLRDINRELGL--- 192
Query: 771 KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
T++ TH++E + D V VM+ G++ + G E++ A
Sbjct: 193 -TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-12
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 20/214 (9%)
Query: 1235 EKKI-GVVGRTGSGKSTLIQALFRVVEPSGG----RILIDGVDISMIGLQDLRSR----L 1285
E +I G+VG +G+GK+TL + + V+EP+ G R+ + VD++ G D R R +
Sbjct: 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAKRYI 367
Query: 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEI---WEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
I+ Q+ L+ RT LD L + E+ + ++V D+ + + +
Sbjct: 368 GILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP 425
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI---REETSRCTVITV 1399
+ S G+R V LA+VL+K+ RI++LDE T ++D T + +I REE + T I V
Sbjct: 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ-TFIIV 484
Query: 1400 AHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
+H + V+D D ++ +GK+++ P +++E+
Sbjct: 485 SHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 34/249 (13%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV----- 1258
+ +I++ENL + Y LK ++ P ++G +G GKST I+ L R+
Sbjct: 9 AQPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 1259 ---VEPSGGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQ 1312
+E G++ I+G DI + +LR + ++ Q P F ++ N+ + H
Sbjct: 67 NCRIE---GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHG-- 121
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKR 1364
NK L +V R A + ++ + S GQ+Q +C+AR L K +
Sbjct: 122 -----ANKKDLDGVVENALR--SAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK 174
Query: 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423
I++ DE T+++D + I+ I T++ V H + +D G+++E+
Sbjct: 175 IILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234
Query: 1424 DSPRQLLED 1432
RQ+ +
Sbjct: 235 GQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I KG A+ G G GKS+LL + L G + + GK Y ++
Sbjct: 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDVLEL 79
Query: 672 --------------TGTIRENILFG------KDMRQSFY--EEVLEGCALNQDIEMWADG 709
G+I +N+ +G K + EE L AL W +
Sbjct: 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL------WDE- 132
Query: 710 DLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
V +R + LSGGQ+QR+ LARA+ + +V + D+P SA+D + T ++ + L
Sbjct: 133 ----VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAEL 187
Query: 768 LSQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGK 802
+ T++ TH ++ AD + +G++ + G
Sbjct: 188 KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I + N+ ++ L I+ + + ++G +G+GKSTL++ + + P GRI
Sbjct: 3 IRINNVKKRF-GAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1268 IDG---VDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN---------LDPLEQHSDQEI 1314
++G D+S + ++D ++ + Q LF TV N P E +
Sbjct: 61 LNGRVLFDVSNLAVRD--RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E++ L + + L S GQRQ V LAR L + ++L+LDE +
Sbjct: 119 EELLRLVQLEGLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 1375 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431
+D +++ +R+ + T + V H ++ D V+VL++G++ + P ++ +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227
Query: 1432 DNSSSFSKLVAEFL 1445
+S F VA FL
Sbjct: 228 HPASRF---VARFL 238
|
Length = 345 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS------- 668
+ I KG A+ G GSGKS+LL+ I+G + + + ++G++ S
Sbjct: 17 LNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASKFRR 75
Query: 669 -----------WIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
I+ T+ EN+ G K+ R+ E LE LN ++
Sbjct: 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE-ALEKVGLNLKLK----- 129
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ I LSGG++QR+ LARA+ + + D+P ++D + ++ LL
Sbjct: 130 -------QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVLDLL 177
Query: 769 SQ-----KTVLYTTHQLEFLDAADLVL 790
+ KT++ TH E AD V+
Sbjct: 178 LELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
++ +G ++ + G G+GKS+LL + G P SG + V G+ + + + G
Sbjct: 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLG---LGGGFNPEL 99
Query: 674 TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T RENI K++ + +E++E L I DL V S G
Sbjct: 100 TGRENIYLNGRLLGLSRKEIDE-KIDEIIEFSELGDFI------DLPVK-----TYSSGM 147
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-C---LMGLLSQ-KTVLYTTHQL 780
K R+ A A D+ + D+ + DA F++ C L LL Q KTV+ +H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVSHDP 202
Query: 781 EFL-DAADLVLVMKDGKIEQSG 801
+ D LV++ GKI G
Sbjct: 203 SSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 54/211 (25%), Positives = 105/211 (49%), Gaps = 21/211 (9%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSG- 1263
K++LE L V + +K ++ FP ++G +G GKST+++++ R+ + PS
Sbjct: 4 KVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1264 --GRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVI 1318
G+IL+D DI G+ +R R+ ++ Q P F ++ N+ + ++ +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI-----AGYKLNGRV 116
Query: 1319 NKCHLAEIVRQDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
N+ EIV + L D + + S GQ+Q +C+AR + K ++++DE
Sbjct: 117 NRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
+++D + I++ I E + T+I V H +
Sbjct: 177 SALDPISTLKIEELIEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 28/238 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I +EN+ Y +VL ++ P ++G G+GKSTL+ + R+++ G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVRTNLD----PLEQ-HSDQEIWEVINKC 1321
IDG++++ ++L +LSI+ Q+ + + TVR + P Q +E +IN+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 1322 ----HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
HL ++ D R LD S GQRQ +A VL + ++LDE ++D
Sbjct: 120 IEYLHLEDL--SD-RYLD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 1378 ATDNVIQQTIR---EETSRCTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
I + +R +E + T++ V H I +D ++ L GKV++ SP ++++
Sbjct: 169 KHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 47/258 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IELEN+ Y + L G++ + ++G +G GK+TL++ + P+ G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLEQHSDQEIWEVINKCHLAE 1325
+DG DI L + ++ + Q+ LF TV N+ L + K AE
Sbjct: 59 LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLR----------LKKLPKAE 106
Query: 1326 IVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
I + LD E N S GQ+Q V +AR L+ + ++L+LDE A D
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG----ALD 162
Query: 1381 NVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPR 1427
+++ ++ E R T + V H D +D + V+++GK+ + +P
Sbjct: 163 LKLRKDMQLELKRLQKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTPE 216
Query: 1428 QLLEDNSSSFSKLVAEFL 1445
++ E+ ++ F VA+F+
Sbjct: 217 EIYEEPANRF---VADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ G++ T + + V G GSGK+TL++ L + P GR+L++G + R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR 73
Query: 1283 SRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341
L + + +V NL HSD+++ E + + L D PVA+
Sbjct: 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-------FEDRPVAQ- 125
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
S GQ++ V LAR+LL + + +LDE T ++D A + + +R ++ +
Sbjct: 126 ---LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
Query: 1402 RIPTVIDNDLVLVLDEG 1418
+ LD G
Sbjct: 183 HQDLGLSEAGARELDLG 199
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 34/217 (15%)
Query: 1208 IELENL-----LVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
+E+E+L L Q VLK ++ T GE + + G +G+GKSTL+++L+ P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGEC-VALSGPSGAGKSTLLKSLYANYLP 60
Query: 1262 SGGRILI----DGVDISMIG---LQDLRSR--------LSIIPQDPMLFQGTVRTNLDPL 1306
GRIL+ VD++ + ++R + L +IP+ + +PL
Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPL 115
Query: 1307 -EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365
E+ +E + LA + +RL P A +S G++Q V +AR + I
Sbjct: 116 LERGVPREAARARARELLARL-NIPERLWHLPPA----TFSGGEQQRVNIARGFIADYPI 170
Query: 1366 LVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAH 1401
L+LDE TAS+D A V+ + I E + +I + H
Sbjct: 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
++ G+ T P G++G GSGKSTL++ L + P G + + GVD+ + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 1284 RLSIIPQD-----PMLFQGTVRTNLDP------LEQHSDQEIW-EVINKCHLAEIVRQDQ 1331
R++++ QD P+ + V P + D + + + L+ + +D
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-E 1390
L S G+RQ V +AR L ++ ++L+LDE T +D +RE
Sbjct: 136 STL-----------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 1391 TSRCTVITVAHRI---PTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
+ TV+ H + + D+ V+VLD G+V+ PR++L
Sbjct: 185 ATGVTVVAALHDLNLAASYCDH--VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 29/187 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG---KKAYVPQSS----WIQ 671
G + V G G GK++LL+ I G +P I+ V G ++ V Q+ W
Sbjct: 27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWR- 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQ 730
+++N+ FG + + LE +M L +R I LSGGQ+QR+
Sbjct: 86 --NVQDNVAFGLQLAGVEKMQRLEIAH-----QMLKKVGLEGAEKRYIWQLSGGQRQRVG 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTTHQLE---FLD 784
+ARA+ +N + + D+PF A+DA T + Q L+ L Q+T VL TH +E F+
Sbjct: 139 IARALAANPQLLLLDEPFGALDAFTREQM--QTLLLKLWQETGKQVLLITHDIEEAVFM- 195
Query: 785 AADLVLV 791
A +LVL+
Sbjct: 196 ATELVLL 202
|
Length = 255 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 28/213 (13%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS- 1262
GKI +++L + Y LK I + ++G +G GKST ++ L R+ + PS
Sbjct: 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1263 --GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWE 1316
G +L+DG DI S I + LR R+ ++ Q P F ++ N+ P
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP-------RTHG 112
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVL 1368
+ +K L EIV ++ L A + ++ ++ S GQ+Q +C+AR L + +L++
Sbjct: 113 IKDKKKLDEIV--EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
DE T+++D + I++ I+E T++ V H
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------YVP 665
I +G + + G GSGKS+L + G SG+ I + GK V
Sbjct: 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVF 88
Query: 666 QSS-------WIQTGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + E + G Q E+L+ L + D R
Sbjct: 89 QDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS---FLD--------R 137
Query: 718 GIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
+ LSGGQ+QRI +ARA+ + I D+P SA+D Q L LL K
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQILNLLLELKKERGL 193
Query: 772 TVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808
T L+ +H L ++ D + VM +G+I + G E+L++
Sbjct: 194 TYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGR----ILIDGVDISMIGL 1278
VLK I FP + ++G +G GKSTL++AL R+ + SG R +L+D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1279 Q--DLRSRLSIIPQDPMLFQGTVRTNL--DP--LEQHSDQEIWEVINKCHLAEIVRQDQR 1332
+LR R+ ++ Q P F ++ N+ P L + + EV+ K L + D+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKS-LRQAALWDE- 136
Query: 1333 LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS 1392
+ + + G S GQ+Q +C+ARVL + ++++DE +++D + I++ ++E
Sbjct: 137 -VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
Query: 1393 RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEY 1423
T+ V H + +D L G ++EY
Sbjct: 196 NYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
|
Length = 251 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 32/214 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQSS---W 669
GS A+ G GSGKS+L +++G + R++ I + G+ AYVPQS W
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVPQSEEVDW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI-NLSGGQK 726
+ + ++ G+ + ++ I A D+ R I LSGGQK
Sbjct: 92 SFPVLVEDVVMMGRYGHMGWLRR---AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL---- 780
+R+ LARA+ V + D+PF+ VD T + L+ L KT+L +TH L
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEGKTMLVSTHNLGSVT 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
EF D VM G + SG E +N EL
Sbjct: 207 EFCDYT----VMVKGTVLASGPTETTFTAENLEL 236
|
Length = 272 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I + + +Y P L + + P + ++G TGSGKSTL+Q L +++P+ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1265 RILIDGVDISM----IGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSD 1311
+ I I+ L+ LR ++ I+ Q P LF+ TV N E+ +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370
Q+ E+I E+V + LL +P G GQ + V +A VL + +LVLDE
Sbjct: 123 QKAREMI------ELVGLPEELLARSPFELSG-----GQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1371 ATASIDTATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426
TA +D + + + +E T + V H + D ++V+ +G V +P
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
Query: 1427 RQLLED 1432
R++ D
Sbjct: 231 REIFAD 236
|
Length = 290 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 30/205 (14%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
KG + + G G+GK++LL +ILG IP G +KV G P W G + + F
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGAS---PGKGWRHIGYVPQRHEF 60
Query: 682 GKDMRQSFYEEVLEGCA---------LNQDIEMWADG----DLSVVGERGI-NLSGGQKQ 727
D S V+ G D D L+ + +R + LSGGQ+Q
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-E 781
R+ +ARA+ + V + D+PF+ +D T ++ L L + +L TTH L +
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAILMTTHDLAQ 175
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
+ D V+++ +G++ G + L
Sbjct: 176 AMATCDRVVLL-NGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-12
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 23/225 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E+ + ++ + ++ + GE I ++G G+GKSTL++ LF + +P G
Sbjct: 5 LEMRGITKRFPGVV--ANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1266 ILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHL 1323
I +DG ++ + +D +R + ++ Q ML TV N+ L + +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQAR- 118
Query: 1324 AEIVRQDQRL-----LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI-DT 1377
A I +R DA VA+ SVG++Q V + + L + R+L+LDE TA +
Sbjct: 119 ARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1378 ATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1420
D + + +R + T+I + H++ V+ D V VL GKV
Sbjct: 175 EADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIK----VHGKKAYVPQSSWIQTGT 674
+G A+ G GSGKS+LL+ I G E P+ I A P S Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ--- 77
Query: 675 IRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQKQ 727
EN LF + Q+ + G L + + L+ VG G+ LSGG++Q
Sbjct: 78 --ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDA 785
R+ LAR + + V + D+PF+A+D ++ L ++ TVL THQ E DA
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPAL-RAEMLDLVLDLHAETKMTVLMVTHQPE--DA 192
Query: 786 ---ADLVLVMKDGKIEQSG 801
A V+ + +G+I G
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-L 1281
+ ++ + +G++G G+GK+TL + +PS G ++ G DI+ GL
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHR 75
Query: 1282 RSRLSIIP--QDPMLFQG-TVRTNL---------------DPLEQHSDQEIWEVINKCHL 1323
+RL I Q LF G TV N+ P + ++E E L
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--EL 133
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI-DTATDNV 1382
E V L N S GQ++ + +AR L + ++L+LDE A + T+ +
Sbjct: 134 LEFVG-----LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1383 IQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
+ IRE + T++ + H + V+ D ++VL+ G+V+ +P ++ +
Sbjct: 189 A-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+EN+ ++ L I+ + + G++G G+GK+T I+ + ++ P G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQ-----HSD--QEIWEVIN 1319
DG + + R+R+ +P++ L+ V L L Q + + I E +
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
+ L+E ++R+ E S G +Q V ++ +L+LDE + +D
Sbjct: 115 RLELSE--YANKRV---------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 1380 DNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423
+++ IRE TVI H++ V + D VL+L++G+ + Y
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQSSWI 670
+ KG + G G+GK++ + ILG I SG + GK Y+P+ +
Sbjct: 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGL 81
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVGERGIN-LSGGQKQ 727
+ + +++ ++ EE I+ W + +LS + + LS G +Q
Sbjct: 82 YPKMKVIDQLVYLAQLKGLKKEEARR------RIDEWLERLELSEYANKRVEELSKGNQQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA- 785
++Q AV + ++ I D+PFS +D L K + L KTV+ +THQ+E ++
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQMELVEEL 194
Query: 786 ADLVLVMKDGKI 797
D VL++ G+
Sbjct: 195 CDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 9e-12
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 38/226 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK---------------- 661
+I KG + G G+GKS+LL I E P + ++ V G+
Sbjct: 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q + + + T+ EN+ F + + V E L + AD +
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL-VGLSDKADRYPA---- 140
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TV 773
LSGGQKQR+ +ARA+ +N + + D+ SA+D T + + L+ ++++ T+
Sbjct: 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRELGLTI 195
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH++E + D V V+ G++ + G ++ A+ + ++
Sbjct: 196 VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEF 241
|
Length = 339 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 42/203 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI-- 675
+ + KG G G+GK++ + ILG I + I GK + + G +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIE 79
Query: 676 ----------RENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-- 720
REN+ +R+ +EVL+ VVG +
Sbjct: 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLD-----------------VVGLKDSAKK 122
Query: 721 ----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLY 775
S G KQR+ +A A+ N D+ I D+P + +D G ++ ++ L Q TVL
Sbjct: 123 KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLI 181
Query: 776 TTHQLEFLD-AADLVLVMKDGKI 797
++H L + AD + ++ GK+
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-12
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 28/214 (13%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQD 1280
+L ++ + + ++G +GSGK+TL+ A+ VE G G+IL +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78
Query: 1281 LRSRLSIIPQDPMLFQG-TVR-----TNLDPLEQHSD----QEIWEVINKCHLAEIVRQD 1330
+ ++ + QD +L G TVR T + L + S ++ E + LA
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----L 133
Query: 1331 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1390
R+ V + S G+R+ V +A LL ++L+LDE T+ +D+ T + T+ +
Sbjct: 134 TRIGGNLV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
Query: 1391 TSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVL 1421
R VI H+ + + D +L+L G+++
Sbjct: 190 ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQD 1280
+ + F K +VG+TGSGKSTLIQ + +++P+ G + +D + I+ ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVINKCH--LAEIVRQDQRLLDA 1336
+R R+ ++ Q P LF+ TV + ++ + EV N H L ++ + +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRC 1394
P G GQ + + + +L I+VLDE TA +D + + + ++
Sbjct: 143 PFQMSG-----GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197
Query: 1395 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434
T+I V+H + V D V+V+ EG ++ SP++L +D
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1280
VL ++ + + +G++GR+G GKSTL + L + +P+ G + G D+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1281 LRSRLSIIPQD-PMLF--QGTVRTNL-DPLEQHSDQEIWEVINKC-HLAEIVRQDQRLLD 1335
R + ++ QD P + TVR + +PL + + E + L ++V D
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-- 1393
+ S GQ Q + +AR L K +++VLDEA +++D VI + +R+
Sbjct: 146 KLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 1394 --CTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422
IT H + V V V+D+G+++E
Sbjct: 202 TAYLFIT--HDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
L N + N TLP GIT F G +GSGK++LI + + P GRI ++
Sbjct: 10 LGNFALDANFTLPAR--GITALF---------GPSGSGKTSLINMIAGLTRPDEGRIELN 58
Query: 1270 G---VDISM-IGLQDLRSRLSIIPQDPMLFQG-TVRTNL----DPLEQHSDQEIWEVINK 1320
G VD I L + R+ + QD LF TVR NL + ++ ++
Sbjct: 59 GRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGI 118
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT- 1379
HL + R L S G++Q V + R LL +L++DE AS+D
Sbjct: 119 EHL--LDRYPGTL------------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 1380 DNVIQ--QTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424
++ + +R+E ++ V+H + V+ D V+VL+ GKV
Sbjct: 165 REILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 24/224 (10%)
Query: 607 FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH----GKK 661
+ + D + +G + G G+GK++LL I + SG
Sbjct: 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP 70
Query: 662 AYVPQSSWIQTG--------TIRENIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGD 710
++V + + G T REN+ F + + + + + L++ +++
Sbjct: 71 SFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA--ELSKRLQL----- 123
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
L + R S G KQ++ +ARA+ + + + D+P S +D T
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSE 813
+ V++++H ++ ++A D V+V+ G++ G E L A
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLR 227
|
Length = 245 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 71/280 (25%), Positives = 113/280 (40%), Gaps = 63/280 (22%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I LENL + Y +L+ ++ T ++IG+VGR G+GKSTL++ L +EP G +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI--------- 1318
R+ + Q+P +T LD + + E+ E++
Sbjct: 62 RPKG-----------LRVGYLSQEP--PLDPEKTVLDYVIE-GFGELRELLAELEEAYAL 107
Query: 1319 ---NKCHLAEIVRQDQRLLDAPVAE------------DGENWSV-----GQRQLVCLARV 1358
L + LD E E+ V G R+ V LAR
Sbjct: 108 LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA 167
Query: 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE- 1417
LL++ +L+LDE T +D + ++ ++ TVI V+H D LD
Sbjct: 168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH------DRYF---LDNV 216
Query: 1418 -GKVLEYDSPRQLLED---NSSSFSKLVAEFLRRTSKSNR 1453
+LE D R L N SS+ + AE LR+ + +
Sbjct: 217 ATHILELD--RGKLTPYKGNYSSYLEQKAERLRQEAAAYE 254
|
Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-11
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIKVHGKK-----------AYVP 665
++I G +A+ G G GK++LL +I G + I + + A +
Sbjct: 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + + +N+ FG ++ ++ E A +++ GD + LSGG
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA--DALKLVGLGDAA--AHLPAQLSGG 141
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH-QLE 781
+QRI +ARA+ DV + D+P SA+DA+ ++ ++ L L + T+L TH Q +
Sbjct: 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L AD +MKDG++ G+ + L
Sbjct: 202 ALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1262
+ +NL + Y L IT + P + ++G +G GKSTL++ R+ + P
Sbjct: 7 LSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1263 GGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1320
G IL +G +I G LR ++ ++ Q P F ++ N+ I NK
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENV-----AYGPRIHGEKNK 119
Query: 1321 CHLAEIVRQD-----------QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
L IV + RL D+ ++ G GQ+Q +C+AR L ++++D
Sbjct: 120 KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG-----GQQQRLCIARTLAVNPEVILMD 174
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428
E +++D I+ I + TVI V H + +D + GK++E+D Q
Sbjct: 175 EPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234
Query: 1429 LLED 1432
+ E+
Sbjct: 235 IFEN 238
|
Length = 253 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 24/245 (9%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGI---TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
S I L+N+ Y P K + + TF K V+G TGSGKST+IQ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1262 SGGRILIDGVDI-----SMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQ 1312
G+ ++ I + ++ LR + ++ Q P LFQ T+ ++ P+ ++
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
+ E K + E+++ Q L + V S GQ++ V LA ++ LVLDE T
Sbjct: 124 Q--EAYKK--VPELLKLVQ-LPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 1373 ASIDTATD----NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1427
+D + N+ ++ +E R +I V H + V+ D V+V+ EGKV+ SP
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKR--IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
Query: 1428 QLLED 1432
++ +
Sbjct: 237 EIFSN 241
|
Length = 289 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG---GRILIDGVDISMIGLQ 1279
LKGI+ + + +G +G GKST ++ R+ + P+ G I IDG +I G+Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1280 --DLRSRLSIIPQDPMLFQGTV--------RTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1329
+LR + ++ Q P F ++ R N Q + E + L + V+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
+L ++ A G GQ+Q +C+AR + +L++DE +++D + +++ I E
Sbjct: 139 --KLKESAFALSG-----GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1390 ETSRCTVITVAHRI---PTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
T++ V H + V D + G+++EYD +++ +
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I +G + + G G GKS+L ILG SG I GK +
Sbjct: 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGK----------------DIT 78
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
K+ R+ E+LE L ++ LSGGQ+QRI +ARA+ N
Sbjct: 79 KLSKEERRERVLELLEKVGLPEEFLYRYP----------HELSGGQRQRIGIARALALNP 128
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE-FLDAADLVLVMKDG 795
+ + D+P SA+D + L+ L ++ T L+ +H L +D + VM G
Sbjct: 129 KLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLG 186
Query: 796 KIEQSGKYEDLIAD 809
KI + G E++ ++
Sbjct: 187 KIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 65/260 (25%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 1200 PEWPSSGKIELE--NLLVQYNPTLP---MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQA 1254
P S I L NL ++ + L I+ TF K ++G +GSGKSTL+
Sbjct: 12 VPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTH 71
Query: 1255 LFRVVEPSGGRILIDGVDIS----------------MIGLQDLRSRLSIIPQDP--MLFQ 1296
+++ G I + + I + ++LR R+S++ Q P LF+
Sbjct: 72 FNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK 131
Query: 1297 GTVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354
T+ ++ P+ + + + K +L ++ D L +P G GQ++ V
Sbjct: 132 DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG-----GQKRRVA 186
Query: 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLV 1412
+A +L + IL+ DE TA +D ++ + Q I + + + TV + H + V++ D V
Sbjct: 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV 246
Query: 1413 LVLDEGKVLEYDSPRQLLED 1432
+V+D+GK+L+ +P ++ D
Sbjct: 247 IVMDKGKILKTGTPYEIFTD 266
|
Length = 320 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-11
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L+ ++ + P K V+G TGSGKSTL+Q+L E S GR+ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
++ +PQ + TVR N+ ++ + + + L + Q L+ + E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT-DNVIQQTIREETSRCTVITVAHR 1402
N S GQ+ V LAR + + + +LD+ +++D + V+++ + T + H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1403 IPTVIDNDLVLVLDEGKV 1420
+ V D V+ L +G+V
Sbjct: 842 VHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-11
Identities = 81/361 (22%), Positives = 163/361 (45%), Gaps = 45/361 (12%)
Query: 490 SLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS-ALATFRILQEPIYN 548
+L+ + I F+ + T +++ T G +L+ A+ LQ + +
Sbjct: 1107 TLRWFQMRIDIIFVFFFIAVTFIAIGTNQD-----GEGEVGIILTLAMNILSTLQWAVNS 1161
Query: 549 LPELISMIAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR-E 604
++ ++ S+ R+ +FI +E+ + ++ + I+ + W + +
Sbjct: 1162 SIDVDGLMR----SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQ 1217
Query: 605 ENFKKPTIKLTD---------KMKIMKGSKVAVCGSVGSGKSSLLSSIL------GEIP- 648
+ + T K T+ + G +V + G GSGKS+LLS++L GEI
Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQI 1277
Query: 649 -RISGAAIKVHG-KKAY--VPQSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALN 700
+S ++ + +KA+ +PQ +I +GT R+N+ D + + +E V E L
Sbjct: 1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLK 1333
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
IE + D V+ + G LS G KQ + LAR++ S + + + D+P + +D T +
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQII 1392
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
++ L S TV+ + H++E L LV++ ++Q + L+ + + L +Q +
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMS 1450
Query: 821 H 821
Sbjct: 1451 A 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 27/250 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ N+ ++ + L ++ P + + ++G +GSGK+TL++ + + P G IL
Sbjct: 3 IEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHLAE 1325
G D + + +Q+ + + Q LF+ TV N+ L + E + AE
Sbjct: 61 FGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRV---KPRSERPPE---AE 112
Query: 1326 IVRQDQRLLDAPVAEDG------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
I + LL V D S GQRQ V LAR L + ++L+LDE ++D
Sbjct: 113 IRAKVHELLKL-VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 1380 DNVIQQTIRE---ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
+++ +R E TV V H ++ D V+V+++G++ + +P ++ + +S
Sbjct: 172 RKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 1436 SFSKLVAEFL 1445
F V FL
Sbjct: 231 PF---VYSFL 237
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHGKKAYV----- 664
I KG + + G GSGKS+L + G + G + K+ G + V
Sbjct: 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ 84
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
P++ ++ T+ E++ FG + C +I D L+ +G
Sbjct: 85 NPETQFVGR-TVEEDLAFGPE----------NLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
LSGGQ Q + LA + + IFD+ S +D +G + ++ KT++Y T
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYIT 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN-----------SELVRQMKAH 821
H LE L AD ++VM GKI G+ E++++D + EL +K H
Sbjct: 194 HNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENLKMH 248
|
Length = 274 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVHGKK----------AYVPQ 666
K G A+ G G+GKS+LL+++ G +SG + ++G+ YVPQ
Sbjct: 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQ 89
Query: 667 -SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T T+RE ++F +R LSGG+
Sbjct: 90 DDILHPTLTVRETLMFAAKLRG---------------------------------LSGGE 116
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL--EF 782
++R+ +A + SN + D+P S +D+ + + L L +T++ + HQ E
Sbjct: 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQPSSEI 175
Query: 783 LDAADLVLVMKDGKI 797
+ D +L++ G++
Sbjct: 176 FELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ KG V G G GK++LL +++G +P SG +I++ G+ AY
Sbjct: 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAY 79
Query: 664 VPQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL-----SVVGER 717
VPQ I T+ EN+L G ++ + E++ +L ++G R
Sbjct: 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPD--------EIY---ELFPVLKEMLGRR 128
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV------DAHTGTHLFKQCLMGLLSQK 771
G +LSGGQ+Q++ +ARA+ + + + D+P + D + + L ++
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG-------RVIRRLRAEG 181
Query: 772 --TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
+L L+F + AD VM+ G++ SG ++L D+ +
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDKVRRYL 228
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 37/201 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK----------AYVPQSS-WIQTG 673
A+ GS GSGK++LL +I G + + I +G+ AYV Q +
Sbjct: 37 AILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96
Query: 674 TIRENILF------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T+RE + + + + ++ +E L + G +SGG+++
Sbjct: 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL------ALTRIGGNLVKGISGGERR 150
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQ--L 780
R+ +A + + V I D+P S +D+ T +L LSQ + V+ T HQ
Sbjct: 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-----TLSQLARRNRIVILTIHQPRS 205
Query: 781 EFLDAADLVLVMKDGKIEQSG 801
+ D +L++ G+I SG
Sbjct: 206 DLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG VA+ GS GSGKS+LL +LG + + + +G+ S+ + +R
Sbjct: 26 LSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPTSGEVLFNGQSLSKLSSN--ERAKLR- 81
Query: 678 NILFGKDMRQSFYEEVLEGCALN-------------QDIEMWADGDLSVVG-ERGIN--- 720
N G F+ + + AL ++ + A L VG E IN
Sbjct: 82 NKKLG--FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKT-VLY 775
LSGG++QR+ +ARA+ + + + D+P +D + +F LM L+ T L
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF--DLMLELNRELNTSFLV 197
Query: 776 TTHQLEFLDAADLVLVMKDGKI 797
TH LE D VL MKDG++
Sbjct: 198 VTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 65/262 (24%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-----PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
++L ++ Y+ LPM F GE+ + ++G +G+GKSTL+ + + P+
Sbjct: 2 LKLTDITWLYH-HLPM-------RFDLTVERGER-VAILGPSGAGKSTLLNLIAGFLTPA 52
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQG-------TVRTN----LDP-LEQ 1308
G + ++G D + + P MLFQ TV N L+P L+
Sbjct: 53 SGSLTLNGQD----------HTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL 102
Query: 1309 HSDQEIWEVINKCHLAEIVRQD--QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366
++ Q + L I RQ + LL + S GQRQ V LAR L++++ IL
Sbjct: 103 NAAQ-------REKLHAIARQMGIEDLLARLPGQ----LSGGQRQRVALARCLVREQPIL 151
Query: 1367 VLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAH------RIPTVIDNDLVLVLDEG 1418
+LDE +++D A + + + + + T++ V+H RI LV+ +G
Sbjct: 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP-----RSLVVADG 206
Query: 1419 KVLEYDSPRQLLEDNSSSFSKL 1440
++ +D P L +S S L
Sbjct: 207 RIA-WDGPTDELLSGKASASAL 227
|
Length = 232 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 29/240 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E +L Y P LKGI F EK + ++G G+GKSTL +++P+ G
Sbjct: 2 LETRDLKYSY-PDGTEALKGIN--FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE 58
Query: 1266 ILIDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWEVIN 1319
+LI G + L ++R + I+ Q+P LF TV ++ PL +E
Sbjct: 59 VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE------ 112
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E+ ++ + L A E EN S GQ++ V +A +L K I+VLDE T+
Sbjct: 113 -----EVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 1375 IDTATDNVIQQTIREETSR-CTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1432
+D + I + + + T+I H + V + D V V+ +GK+++ +P+++ D
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 29/208 (13%)
Query: 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667
KP L D + I G V V G G GK++LL+ I G + G+ I+++G++ P +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGA 74
Query: 668 S------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
W+ + +N+ FG +R + E +M A L
Sbjct: 75 ERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAH-----QMLALVGLEGAE 126
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
+ I LSGG +QR+ +ARA+ + + D+PF A+DA T + ++ L+ L + K
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQ 185
Query: 773 VLYTTHQLE---FLDAADLVLVMKDGKI 797
VL TH +E FL +VL G++
Sbjct: 186 VLLITHDIEEALFLATRLVVLSPGPGRV 213
|
Length = 259 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 30/246 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------V 1259
IE +L V Y L ++ P + ++G +G GKST ++ + R+ V
Sbjct: 40 IEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 1260 EPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN------LDPLEQHSD 1311
E G + G ++ + + LR R+ ++ Q P F ++ N + + D
Sbjct: 98 E---GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
+ + E + + L + V+ DQ LD G + S GQ+Q +C+AR + ++++DE
Sbjct: 155 ERVEESLRRAALWDEVK-DQ--LD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207
Query: 1372 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQL 1429
+++D + I+ I E TV+ V H + I + + L G+++E+D ++
Sbjct: 208 ASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267
Query: 1430 LEDNSS 1435
E+ S
Sbjct: 268 FENPES 273
|
Length = 285 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 28/232 (12%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSG---GRILI 1268
+K IT TF G K + + G G+GKSTL++ L V P G G I+
Sbjct: 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIF 66
Query: 1269 DGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNL---DPLEQHSDQEIWEVINKCHL 1323
+G ++ ++D R+ ++II Q+ L + +V N+ + + + + +
Sbjct: 67 EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ- 125
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+++ Q + LD A N +GQ+QLV +A+ L K+ R+L+LDE TAS+ + V+
Sbjct: 126 -KLLAQLK--LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182
Query: 1384 QQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433
IR+ + I ++H++ V +D + V+ +G+ + + ED+
Sbjct: 183 LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234
|
Length = 506 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 30/223 (13%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS- 1283
+K ++ T + + ++G GSGKSTL + L ++EP+ G +LID + G RS
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDYSYRSQ 87
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN-----KCHLAEIVRQD---QRLLD 1335
R+ +I QDP T+L+P Q I ++++ L R+ + L
Sbjct: 88 RIRMIFQDP-------STSLNP-----RQRISQILDFPLRLNTDLEPEQREKQIIETLRQ 135
Query: 1336 APVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE- 1389
+ D ++ + GQ+Q + LAR L+ + ++++ DEA AS+D + + + + E
Sbjct: 136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 1390 -ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
E + I V + + +D VLV+ +G+V+E S +L
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 41/221 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
I +G+ V + G G GK+++L + G E P + I + G+ V S IQ
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGED--VTHRS-IQQRDICMV 83
Query: 674 ----------TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI 719
++ EN+ +G M EE V E L DL+ +R +
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV---------DLAGFEDRYV 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
+ +SGGQ+QR+ LARA+ V +FD+P S +DA+ + ++ + L Q+ T LY
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNITSLY 192
Query: 776 TTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TH Q E +D V+VM GKI Q G ++L S +
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
|
Length = 351 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 44/233 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ELEN+ ++ L + + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQH--SDQEI 1314
I G D++ + P+D M+FQ TV N+ L+ EI
Sbjct: 59 IGGRDVTDLP-----------PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E + + +AE+++ + LLD + S GQRQ V L R ++++ ++ ++DE ++
Sbjct: 108 DERVRE--VAELLQIEH-LLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
Query: 1375 IDTATDNVIQQTIREETSR------CTVITVAH-RIPTVIDNDLVLVLDEGKV 1420
+D ++ +R E R T I V H ++ + D + V+++G++
Sbjct: 161 LDAK----LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP-----------QS 667
A+ G GSGK++L+ I G R I ++G K ++P ++
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 668 SWIQTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
++R N+ +G R+ +E V IE+ G L +G LS
Sbjct: 85 RLFPHLSVRGNLRYGMKRARPSERRISFERV---------IELLGIGHL--LGRLPGRLS 133
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT---VLYTT 777
GG+KQR+ + RA+ S+ + + D+P +A+D + L L L + +LY +
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERLHAEFGIPILYVS 189
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
H L E L AD V+V++DG++ +G ++ A +
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 1224 VLKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ G++ GE + + G GSGK+TL++ + ++ P+ G I +DG DI D+
Sbjct: 17 LFSGLSFTLAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DDPDVA 72
Query: 1283 SRLSII-PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE- 1340
+ ++ M TV NL E W +I + + AP+A
Sbjct: 73 EACHYLGHRNAMKPALTVAENL---------EFWAAFLGGEELDIAAALEAVGLAPLAHL 123
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400
S GQ++ V LAR+L+ + I +LDE TA++D A + + IR ++ ++ A
Sbjct: 124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
Query: 1401 HRIPTVIDN 1409
IP +
Sbjct: 184 THIPLGLPG 192
|
Length = 207 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 52/194 (26%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDI--SMIG 1277
L GI+ F ++ ++G +G GKST ++ L R+ + G I +G +I S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLD--------PLEQHSDQEIWEVINKCHLAEIVRQ 1329
L +LR + ++ Q P F +V N+ ++ DQ + E + + A I ++
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ---AAIWKE 136
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
+ LD + + +S GQ+Q +C+AR L + ++++LDE T+++D + + I++T+ E
Sbjct: 137 TKDNLD----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 1390 ETSRCTVITVAHRI 1403
+ T I V H +
Sbjct: 193 LKHQYTFIMVTHNL 206
|
Length = 251 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 4e-11
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + + G TGSGK++L+ + +EPS G+I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q + GT++ N+ + + V+ C L E + + + + E G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQR + LAR + K + +LD +D T+ + + + + + T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444
+ + D +L+L EG Y + + L+ FS + +
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFSSKLMGY 259
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------------KKAY 663
I G VA+ G G+GKS+LL I + S +I + G +
Sbjct: 25 INPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------E 716
+ Q + I+ T+ EN+L G+ + + +L G +D E A L VG +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLL-GRFSEEDKER-ALSALERVGLADKAYQ 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------Q 770
R LSGGQ+QR+ +ARA+ D+ + D+P +++D T +M L
Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ-----VMDYLKRINKEDG 196
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ HQ++ AD ++ +K G+I
Sbjct: 197 ITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 48/201 (23%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1297
+G+VG +G GKSTL + + + EP+ G IL +G DI
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI------------------------ 77
Query: 1298 TVRTNLDPLEQHSDQEIWEVINKCHLAE--IVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355
++ + + E++ K L E + R L S GQRQ + +
Sbjct: 78 -----TKLSKEERRERVLELLEKVGLPEEFLYRYPHEL------------SGGQRQRIGI 120
Query: 1356 ARVLLKKKRILVLDEATASIDTAT-DNVIQ--QTIREETSRCTVITVAHRIPTVID-NDL 1411
AR L +++V DE +++D + ++ + ++EE T + ++H + V +D
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-LTYLFISHDLSVVRYISDR 179
Query: 1412 VLVLDEGKVLEYDSPRQLLED 1432
+ V+ GK++E ++ +
Sbjct: 180 IAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 51/165 (30%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299
+ G +G+GKS+L +AL + GRI + L +PQ P L GT+
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIGMPE-----------GEDLLFLPQRPYLPLGTL 80
Query: 1300 RTNLDPLEQHSDQEI--WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357
R +Q I W D L S G++Q + AR
Sbjct: 81 R----------EQLIYPW--------------DDVL------------SGGEQQRLAFAR 104
Query: 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
+LL K + + LDEAT+++D +++ + Q ++E TVI+V HR
Sbjct: 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 45/248 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPS--- 1262
+++ +L V YN L ++ F + ++G +GSGKSTL++++ R+ + P
Sbjct: 6 LQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 1263 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN---------------LDP 1305
G I+ +G +I DLR + ++ Q P F ++ N LD
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE 123
Query: 1306 LEQHSDQ--EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
+ S + IW+ + RL D+ + G GQ+Q VC+ARVL
Sbjct: 124 AVEKSLKGASIWDEVK-----------DRLHDSALGLSG-----GQQQRVCIARVLATSP 167
Query: 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI--PTVIDNDLVLVLDEGKVL 1421
+I++LDE T+++D + I++T+ T++ V + + I + LD G ++
Sbjct: 168 KIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD-GDLI 226
Query: 1422 EYDSPRQL 1429
EY+ +Q+
Sbjct: 227 EYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 54/217 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------PQSSW 669
+I KG +V + G G+GKS+LL I G SG +KV GK A + P+
Sbjct: 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPE--- 103
Query: 670 IQTGTIRENILF--------GKDMRQSFYEEVLE----GCALNQDIEMWADGDLSVVGER 717
TG RENI K++ +E++E G ++Q ++
Sbjct: 104 -LTG--RENIYLRGLILGLTRKEI-DEKVDEIIEFAELGDFIDQPVK------------- 146
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGL----LSQKT 772
S G R+ + A + D+ + D+ + DA F++ CL L KT
Sbjct: 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKT 199
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
++ +H L + D + ++ G+I G E++I
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 33/219 (15%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL- 1281
V+K I+ T PGE +G+VG +GSGKST AL R++ S G I DG + + + L
Sbjct: 301 VVKNISFTLRPGET-LGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1282 --RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI--VRQDQRLLDA- 1336
R R+ ++ QDP ++L+P + + +I E + H + +++Q+++
Sbjct: 359 PVRHRIQVVFQDP-------NSSLNP--RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 1337 -PVAEDGEN-------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
V D E +S GQRQ + +AR L+ K +++LDE T+S+D I ++
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Query: 1389 --EETSRCTVITVAHRIPTVIDNDL---VLVLDEGKVLE 1422
++ + + ++H + V L V+VL +G+V+E
Sbjct: 470 SLQQKHQLAYLFISHDLHVV--RALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP---------QSS 668
+ I +G +++ G G GKS+LL+ I G + + + + + GK+ P S
Sbjct: 6 LTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 669 WIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ T+RENI D+ +S ++E + I + G +R LSG
Sbjct: 65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVE-----EHIALV--GLTEAADKRPGQLSG 117
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL- 780
G KQR+ +ARA+ V + D+PF A+DA T +L ++ LM + + TVL TH +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE-LMQIWEEHRVTVLMVTHDVD 176
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
E L +D V+++ +G G+
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 45/256 (17%)
Query: 1196 SRPSPEWPSSGK--------IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGS 1246
P P+ P IEL+N+ V+ N +L ++ PGE +VG G+
Sbjct: 12 ELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK--ILGDLSWQVNPGEHWA-IVGPNGA 68
Query: 1247 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIPQDPMLFQGTVRTNLDP 1305
GK+TL+ L PS G + + G +LR R+ ++ L + R
Sbjct: 69 GKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETV 125
Query: 1306 LE--------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
+ + E L E++ + L D P S G+++
Sbjct: 126 RDVVLSGFFASIGIYQEDLTAEDLAAAQ--WLLELL-GAKHLADRPFGS----LSQGEQR 178
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC---TVITVAHR---IPT 1405
V +AR L+K +L+LDE +D + + E + ++ V H IP
Sbjct: 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238
Query: 1406 VIDNDLVLVLDEGKVL 1421
+ L+L EG+V+
Sbjct: 239 CFTH--RLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
+ G+ + G +G G+GK+T I+ L ++ P+ G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1285 LSIIPQDPMLFQG-TVRTNLDPL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1336
+ I+PQ + + T R NL+ + + +++ E++ L E+ R +
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---LFELGEAADRPV-- 122
Query: 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CT 1395
+S G R+ + +A L+ + +L LDE T +D T I IR T
Sbjct: 123 ------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1396 VITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
++ H + D + ++D G+++ +P +L
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-11
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 14/219 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I+ + + V G TGSGKS+L+ + +EPS G+I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S PQ + GT++ N+ + + VI C L E + + E G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD-NVIQQTIREETSRCTVITVAHR 1402
S GQR + LAR + K + +LD +D T+ + + + + S T I V +
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+ + D +L+L EG Y + +L S L+
Sbjct: 608 LEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 46/222 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL S+ L RI G + G+ Y + ++
Sbjct: 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVVEL 80
Query: 672 ---TG-----------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
G +I +NI +G K EE L+ AL W +
Sbjct: 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL------WDE- 133
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 134 ----VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEELIQ 188
Query: 766 GLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ +D DG++ + G E +
Sbjct: 189 ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ I+ T P G++G G+GKSTL++ + ++ P+ G I+ DG + +DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1283 SRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
S+I P+ T R NL L D I EV+N L ++ +
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK------- 123
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1398
+S+G +Q + +A LL ++L+LDE T +D +++ IR + TVI
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 1399 VAH 1401
+H
Sbjct: 180 SSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 43/232 (18%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1277
LKGI F + ++G +G GKST ++ L R+ + P G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
+ LR ++ ++ Q P F ++ N VI LA + +D+ +LD
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYEN--------------VIYGLRLAGV--KDKAVLDEA 124
Query: 1338 VA-----------------EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
V E + S GQ+Q VC+ARVL K +++LDE T+++D +
Sbjct: 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184
Query: 1381 NVIQQTIREETSRCTVITVAHRI--PTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
I+ + E + T+I V H + + I + L G ++E+ +Q+
Sbjct: 185 TQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFL-TGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-11
Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 1207 KIELENLLVQYNPTLPMVLK---GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+I+++N++ +N LP LK ++ + I ++G+TGSGK+T I+ L ++ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1264 GRI--------------LIDGVDISMI----------GLQDLRSRLSIIPQ--DPMLFQG 1297
G I + V ++ ++++R R+ ++ Q + LF+
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1298 TVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVC 1354
T+ ++ P+ +E + ++ E+V D+ L +P S GQ++ V
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLDESYLQRSPF-----ELSGGQKRRVA 175
Query: 1355 LARVLLKKKRILVLDEATASIDTA-TDNV--IQQTIREETSRCTVITVAHRIPTVIDNDL 1411
LA +L + LV DE TA +D + I + ++ T+I V H +DN L
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHD----LDNVL 229
Query: 1412 -----VLVLDEGKVLEYDSPRQLLEDN 1433
+ +GK+++ +L DN
Sbjct: 230 EWTKRTIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-11
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 44/218 (20%)
Query: 1223 MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281
VLKGI T GE ++G G+GKSTL++ + +V P G + I G
Sbjct: 25 EVLKGIDFTLHAGEVH-ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN---------P 74
Query: 1282 RSRLS----------IIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINK--CHLAE 1325
+RL+ ++PQ+P+LF +V+ N+ P Q S Q++ +++ C L
Sbjct: 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD- 133
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNVIQ 1384
LD+ + V RQ+V + R L++ RIL+LDE TAS+ A T+ +
Sbjct: 134 --------LDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFS 181
Query: 1385 QTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1420
+ IRE ++ ++ ++H++P + D + V+ +G +
Sbjct: 182 R-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 35/220 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA------------AIKVHGKKAYVP 665
+K G+ + G G+GKS+L+ I I G+ I + K V
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 666 QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q + GT+++NI +G K++ +Y L LN++ +A D+
Sbjct: 84 QQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSIVGLNKE---YATRDVK------- 130
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
NLSGG+ QR+ +AR + +N +V + D+P SA+D T T + ++ ++ L ++ TV++ T
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
H +E D + G + + K D + +E+ +
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229
|
Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 45/228 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSS---LLSSIL----GEIPRISGAAIKVHGKKAYV------- 664
+I +G VA+ G GSGKS+ +L+ +L GEI +I G I K +
Sbjct: 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENLK-EIRKKIGII 88
Query: 665 ---PQSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
P + +I T+ ++I FG K M+ + A +E + D +
Sbjct: 89 FQNPDNQFIGA-TVEDDIAFGLENKKVPPKKMKDIIDD-----LAKKVGMEDYLDKEPQ- 141
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
NLSGGQKQR+ +A + N ++ IFD+ S +D G K+ ++ L K
Sbjct: 142 ------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK-GKREIKKIMVDLRKTRKK 194
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
T++ TH ++ AD V+V +GK+ GK ++++ ++ E++ + K
Sbjct: 195 TLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK--EILEKAK 240
|
Length = 271 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 38/232 (16%)
Query: 613 KLTDKMKI--MKGSKVAVCGSVGSGKSSLLSSILGEI------------PRISGAAIKVH 658
+L D + + G +A+ G G+GKS+LL ++ GE+ P S ++
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 659 GKKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+A +PQ+S + T++E + G+ +S E + Q + A DLS + R
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL---AATDLSGLAGR 131
Query: 718 GIN-LSGGQKQRIQLAR------AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG++QR+QLAR + D+P SA+D H + + L Q
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRLARQ 186
Query: 771 KT-----VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
VL H L L A AD ++++ G++ SG +D++ D+ E V
Sbjct: 187 LAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 56/278 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G V G+ G+GKS+L+ + L E P SG+ I V G+ + S + R
Sbjct: 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVI-VDGQD--LTTLSNSELTKARRQ 83
Query: 679 I--LFGKDMRQSF----YEEVLEGCAL--------NQDIEMWADGDLSVVG------ERG 718
I +F Q F V AL +I+ L++VG
Sbjct: 84 IGMIF-----QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D T Q ++ LL + T
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-----TQSILELLKEINRRLGLT 193
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+L TH+++ + D V V+ +G++ + G ++ + + L ++ R +L ++ P
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI--RSTLH-LSIP 250
Query: 832 QEDKCLSRVPCQMSQITEERFAR--PISCGEFSGRSQD 867
++ ++ FA P+ EF+G++ D
Sbjct: 251 ED---------YQERLQATPFADSVPMVRLEFTGQTVD 279
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 60/250 (24%)
Query: 1234 GEKKIGVV-GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR----SRLSII 1288
E +I V+ G +GSGKSTL++ L R++EP+ G IL+DG DI+ + +LR ++S
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKIS-- 109
Query: 1289 PQDPMLFQG-------TVRTNLD-PLE------QHSDQEIWEVINKCHLAEIVRQDQRLL 1334
M+FQ TV N+ LE ++ E + L + L
Sbjct: 110 ----MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNEL 165
Query: 1335 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC 1394
S G +Q V LAR L IL++DEA +A D +I+ +++E
Sbjct: 166 -----------SGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQDELLEL 210
Query: 1395 ------TVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442
T++ + H RI D + ++ +G++++ +P ++L + ++ + V
Sbjct: 211 QAKLKKTIVFITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPANDY---VR 262
Query: 1443 EFLRRTSKSN 1452
+F+R +S
Sbjct: 263 DFVRNVDRSR 272
|
Length = 386 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY------VPQSSWI-Q 671
A+ G G+GKS+L+ I G +P SG +++ G KA+ VPQ +
Sbjct: 41 ALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99
Query: 672 TGTIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+++ENILFG RQ+ +++ + GC L+ D + G L V +
Sbjct: 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS---SAGSLEV----------ADR 146
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQL-EFLD 784
Q +++ R + +S + I D+P +++ LF + + LL+Q +++ +H+L E
Sbjct: 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQ 205
Query: 785 AADLVLVMKDGKIEQSGKYEDLIADQ 810
AD + VM+DG I SGK DL D
Sbjct: 206 LADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1261
K +ENL + Y LK I P + ++G +G GKSTL++ L R+ +
Sbjct: 3 KFNIENLDLFYGEN--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1262 SGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVIN 1319
G++ +DG DI I + DLR ++ ++ Q P F ++ N+ L + +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQG------IKD 114
Query: 1320 KCHLAEIVRQDQR----------LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
K L E+V + R L + S GQ+Q +C+AR + + ++++D
Sbjct: 115 KKVLDEVVERSLRGAALWDEVKDRLKSH----AFGLSGGQQQRLCIARTIAMEPDVILMD 170
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAH 1401
E T+++D + I++ + E T++ V H
Sbjct: 171 EPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 30/225 (13%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L ++ TFP K G++G GSGKSTL++ L R PS G IL+D + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1284 RLSIIPQDPMLFQG-TVRT-----------NLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331
+++ +PQ +G TVR L +++ E I+ L +
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA---H 142
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTI 1387
RL+D+ S G+RQ +A ++ + R L+LDE T+++D A ++ +
Sbjct: 143 RLVDS--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194
Query: 1388 REETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1431
+E TVI V H I D ++ L G+++ +P +L+
Sbjct: 195 QERG--LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL+ +Y ++G++ + G++G G+GK+T I+ L +++P+ GR
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS----------DQEIWEV 1317
+ G D+ +++R R+ I+ QD + T + L H+ + I E+
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDEL--TGWENLYIHARLYGVPGAERRERIDEL 115
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
++ L E D V +S G R+ + +AR L+ + +L LDE T +D
Sbjct: 116 LDFVGLLEAA-------DRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164
Query: 1378 ATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
T + + I + E T++ H + D V ++D G+++ +P +L
Sbjct: 165 QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 27/226 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE N+ Y P L ++ + + + G +G+GK+TL++ L+ + PS G++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1268 IDGVDISMIGLQD-----LRSRLSIIPQD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINK 1320
I G D++ L+ LR R+ ++ QD +L TV N+ PL EV K
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL---------EVRGK 109
Query: 1321 CHLAEIVRQDQRLLDAPVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
EI R+ L E E S G++Q V +AR ++ +L+ DE T ++
Sbjct: 110 KE-REIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1376 DTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGK 1419
D I ++ R T + VA +++D V++LD+G+
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 45/217 (20%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
E+ L ++ ++ ++ GE +G+ G G+G++ L +ALF + P+ G I
Sbjct: 6 EVRGL------SVKGAVRDVSFEVRAGEI-VGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 1268 IDGVDISMIGLQD-LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE-VINKCHLAE 1325
+DG ++ +D +R+ ++ +P+D +G V D + E + L
Sbjct: 59 LDGKPVTRRSPRDAIRAGIAYVPEDRKR-EGLV----------LDLSVAENIALSSLL-- 105
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
S G +Q V LAR L + R+L+LDE T +D I +
Sbjct: 106 --------------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145
Query: 1386 TIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1420
IRE V+ ++ + ++ D +LV+ EG++
Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 52/209 (24%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1261
+IE+ENL ++ +LK + P ++G +G GKST I+ L R+ +
Sbjct: 3 RIEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1262 SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQE---IW 1315
G I +DGVDI + + +LR ++ ++ Q P F ++ N+ L H + + I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1316 EVINKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E + + A + + + LD + S GQ+Q +C+AR + ++++DE ++
Sbjct: 121 ERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 1375 IDTATDNVIQQTIREETSRCTVITVAHRI 1403
+D + I+ I + T++ V H +
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + +G VA+ G G+GK++LL +I+G +P SG +I+ G+ Y
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGY 79
Query: 664 VPQSSWIQTG-TIRENILFG-----KDMRQSFYEEVLEGCALNQDI-----EMWADGDLS 712
VP+ I T+ EN+L G + R++ E V E + E
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE-------LFPRLKERR------ 126
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKQCLMGL 767
+ LSGG++Q + +ARA+ S + + D+P V+ +F + + L
Sbjct: 127 --KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIF-EAIREL 178
Query: 768 LSQK-TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ T+L F L+ AD V++ G++ G +L+AD
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 37/253 (14%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+E+L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1267 LIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQ 1312
++G +I + LQ LR+RL ++ Q L+ TV N+ H
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH--- 120
Query: 1313 EIWEVINKCHLAEIVRQDQRLLD-APVAEDGENW----SVGQRQLVCLARVLLKKKRILV 1367
V+ AE + + ++ L +AE + + S GQ+Q V +AR L + +++
Sbjct: 121 ----VLGVSK-AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML 175
Query: 1368 LDEATASIDT----ATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422
DE T+++D V+Q E T++ V H + D + V+ L +GK+ E
Sbjct: 176 FDEPTSALDPELVGEVLKVMQDLAEEGR---TMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
Query: 1423 YDSPRQLLEDNSS 1435
P Q+ + S
Sbjct: 233 EGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSS---LLSSILG-----------EIPRISGAAIK-VHGKK- 661
+ I +G + G GSGKS+ LL+ ++ +I +IS A ++ V KK
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGER 717
A V QS + + T+ +N FG ++ EE E AL Q +E +A
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD----- 163
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYT 776
LSGG +QR+ LARA+ N D+ + D+ FSA+D T + + + + Q+T+++
Sbjct: 164 --ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
+H L E + D + +M++G++ Q G ++++ + ++ VR
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 40/216 (18%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1262
I L+N+ + Y +K + C P K ++G +G GKST++++L R+ +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1263 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN-------------LDPLE 1307
GR+L DG D+ + ++R R+ ++ Q P F ++ N +D L
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 1308 QHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365
+ S ++ +W+ +C +D+ + E G + S GQ+Q +C+AR + + +
Sbjct: 132 ERSLRKAAVWD---EC-------KDK------LNESGYSLSGGQQQRLCIARTIAIEPEV 175
Query: 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
+++DE +++D + I++T+ E T++ V H
Sbjct: 176 ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 65/236 (27%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP--QDP--MLF 1295
++G +G GKSTL++ L +P+ G+I++DGVD LS +P Q P M+F
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD------------LSHVPPYQRPINMMF 97
Query: 1296 QG-------TVRTNL------DPLEQHS-DQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341
Q TV N+ D L + + E++ H+ E ++ L
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL------- 150
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTV----- 1396
S GQRQ V LAR L K+ ++L+LDE ++D + +Q + + R V
Sbjct: 151 ----SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 1397 -------ITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
+T+A RI +++ GK ++ P ++ E ++ +S AEF+
Sbjct: 207 THDQEEAMTMAGRIA---------IMNRGKFVQIGEPEEIYEHPTTRYS---AEFI 250
|
Length = 377 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 21/225 (9%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1277
LK I + ++G +G GKST I+ L R+VE PS G+IL +I
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR----- 1332
+++LR+ + ++ Q P F ++ N+ +I + +K L EIV + R
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVT-----YGPKIHGIKDKKTLDEIVEKSLRGAAIW 154
Query: 1333 -LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1391
L + ++ S GQ+Q +C+AR L + ++++DE T+++D + +++ ++E
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 1392 SRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
++I V H + I + L+ G V EYD ++ + S
Sbjct: 215 KDYSIIIVTHNMQQAARISDKTAFFLN-GYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSG---GRILI 1268
+KGI TF G K + G+ G G+GKSTL++ L V P G G I
Sbjct: 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-SGVYPHGTWDGEIYW 62
Query: 1269 DGVDISMIGLQDL-RSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEI 1326
G + ++D R+ + II Q+ L L E EI + +
Sbjct: 63 SGSPLKASNIRDTERAGIVIIHQELTLVP-----ELSVAENIFLGNEITLPGGRMAYNAM 117
Query: 1327 VRQDQRLL------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
+ + LL V ++ GQ+QLV +A+ L K+ R+L+LDE ++S+
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177
Query: 1381 NVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433
++ IR+ + + ++H++ V D + V+ +G+ + + ED+
Sbjct: 178 EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDD 232
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KT 772
G+ ++LSGGQ+QR+ +ARA+ +V +FD+P SA+D + + +M L++ KT
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKT 204
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
++ TH++ F + V+ + GKIE+ G E L + S ++Q
Sbjct: 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
|
Length = 257 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 38/254 (14%)
Query: 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGK 636
+ S VAID+ + K + + G + G G+GK
Sbjct: 28 EAKASIPGSMSTVAIDLA------GVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGK 80
Query: 637 SSLLSSILGEIPRISGAAIKVHG------------KKAYVPQ-SSWIQTGTIRENIL--- 680
S++ ILG +G I V G + VPQ + T+REN+L
Sbjct: 81 STIARMILGMTSPDAGK-ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG 139
Query: 681 --FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
FG R+ E V+ +E AD +S +LSGG K+R+ LARA+ ++
Sbjct: 140 RYFGMSTREI--EAVIPSLLEFARLESKADARVS-------DLSGGMKRRLTLARALIND 190
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ I D+P + +D H HL + L LL++ KT+L TTH +E + D + V++ G+
Sbjct: 191 PQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
Query: 797 IEQSGKYEDLIADQ 810
G+ LI +
Sbjct: 250 KIAEGRPHALIDEH 263
|
Length = 340 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 39/203 (19%)
Query: 627 AVCGSVGSGKSSLLSSILG----EIPRIS-----------GAAIKVHGKK-AYVPQSSWI 670
A+ G GSGK+SL++ I G + RI G + ++ YV Q + +
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
T+R N+ +G M +S + +Q + + L + LSGG+KQR+
Sbjct: 88 FPHYTVRGNLRYG--MWKSMRAQ------FDQLVALLGIEHL--LDRYPGTLSGGEKQRV 137
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKT---VLYTTHQL-EF 782
+ RA+ + ++ + D+P +++D K+ ++ L + +LY +H L E
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPR-----KREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 783 LDAADLVLVMKDGKIEQSGKYED 805
L AD V+V+++GK++ SG E+
Sbjct: 193 LRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 33/233 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
K+ +G G G+GK++ + + + SG A KV VPQ
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73
Query: 667 SSWIQTG-TIRENI-----LFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T REN+ L+G KD + EE+LE E+ D V
Sbjct: 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL------FELGEAADRPVGT--- 124
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
SGG ++R+ +A ++ DV D+P + +D T + + L + T+L TT
Sbjct: 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-WDYIRALKEEGVTILLTT 181
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
H +E D D + ++ G+I G E+L + + +SL
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEV 234
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 1240 VVGRTGSGKSTLIQALFRVVE--PSG---GRILIDGVDI--SMIGLQDLRSRLSIIPQDP 1292
++G +G GKST ++++ R+ + PS G IL +G++I S I + +LR + ++ Q P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 1293 MLFQGTVRTNLDPLEQHS--------DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344
F ++ N+ +++ D+ + E + K L + V+ RL + ++ G
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD--RLHSSALSLSG-- 167
Query: 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404
GQ+Q +C+AR L K +L+LDE +++D ++ I++ I E ++I V H +
Sbjct: 168 ---GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 1405 TVID-NDLVLVLDEGKVLEYDSPRQLL 1430
+ +D G ++EYD Q+
Sbjct: 225 QALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I L+N+ Y P L + T +G TGSGKST++Q L + P+ G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1265 RILIDGVDISMIG----LQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE 1316
+ +D I+ ++ +R ++ ++ Q P LF+ TV ++ P QE E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
+ + LA +V + L + E S GQ + V +A +L + +ILVLDE TA +D
Sbjct: 123 ALAREKLA-LVGISESLFEKNPFE----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1377 TATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
+ ++ S T++ V H + V + D V VL++GK++ P+ + +D
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 34/245 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL+ +++ VL GI PGE + ++G +GSGK+TL++ + + +P G I
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEV-VAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 1267 LIDGVDISM---IGLQ-----DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE-- 1316
+ + I + Q LR + + Q+ LF RT L+ I E
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPH--RTVLE--------NIIEGP 110
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGEN------WSVGQRQLVCLARVLLKKKRILVLDE 1370
VI K E R L A V G+ S GQ+Q V +AR L + +++ DE
Sbjct: 111 VIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE 170
Query: 1371 ATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1427
T+++D + TIR+ + R VI V H + D D + +D+G+++E +
Sbjct: 171 PTSALDPELVGEVLNTIRQLAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
Query: 1428 QLLED 1432
L D
Sbjct: 230 ALFAD 234
|
Length = 250 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 25/213 (11%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQD 1280
VLKG++ + + + +VG +GSGKSTL+ L + P+ G +L +G +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1281 LRSR-LSIIPQ-DPMLFQGTVRTNLD-PL------EQHSDQEIWEVINKCHLAEIVRQDQ 1331
LR++ L I Q +L T N+ PL + + + +E++ K L +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL------EH 133
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-- 1389
R+ P G G+RQ V +AR L+ + +++ DE T ++D +I + E
Sbjct: 134 RINHRPSELSG-----GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 1390 ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
+ + V H + D VL + +G++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HGKKAYVPQSSWIQTGTIRENIL 680
G+ + +CG G GKSSL ILGE+ + G + GK YVPQ ++ GT+R+ I+
Sbjct: 478 GNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQII 536
Query: 681 --------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
+ + E++L+ L +E +G S V + LSGG+KQRI +A
Sbjct: 537 YPDSSEDMKRRGLSDKDLEQILDNVQLTHILE--REGGWSAVQDWMDVLSGGEKQRIAMA 594
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGL----LSQKTVL--YTTHQLEF 782
R Y I D+ SAV ++++ C G+ +S + L Y + L
Sbjct: 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM 651
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ LEN+ V + VL ++ K + ++G G+GKSTL++ + +V P G I
Sbjct: 5 VSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI- 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQ----DPMLFQGTVR-TNLDPLEQHSDQEIWEVINKCH 1322
++ + R+ +PQ D L R L P + D I + +
Sbjct: 62 ----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED--ILPALKRV- 108
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT----A 1378
Q L+DAP+ + S G+ Q V LAR LL + ++LVLDE T +D A
Sbjct: 109 ------QAGHLIDAPM----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDE 1417
++I Q +R E C V+ V+H + V+ D VL L+
Sbjct: 159 LYDLIDQ-LRRELD-CAVLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1288
+PGE + +VG +GSGKST +AL R+VE GG I+ +G I + LQ LR + I
Sbjct: 348 WPGET-LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 1289 PQDPMLFQGTVRTNLDPLEQ--HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW- 1345
QDP +LDP + S E V + LL+ W
Sbjct: 407 FQDPY-------ASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 1346 -----SVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
S GQRQ +C+AR L ++++ DEA +++D +
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 46/226 (20%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1263
I++ NL Y+ +L+G++ K ++G +G GKST ++ L R+ E
Sbjct: 8 IKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65
Query: 1264 -GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN---------------LDP 1305
GR+ +I + L LR ++S++ P LF +V N +D
Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD 125
Query: 1306 LEQHS--DQEIW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362
+ + + D ++W E+ +K H + + + S GQ+Q +C+AR L K
Sbjct: 126 IVESALKDADLWDEIKHKIHKSAL-----------------DLSGGQQQRLCIARALAVK 168
Query: 1363 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV 1406
++L++DE +D ++ I+ S T++ V+H + V
Sbjct: 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-10
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%)
Query: 625 KVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQ 671
KV V G G+GKSS+L+++ G I I + G + +PQS +
Sbjct: 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+GT+R NI + + E LE + I+ G + V E G N S GQ+Q + L
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ S + + D+ ++VD T + L ++ + T+L H+L + D +LV
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441
Query: 792 MKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ G++ + ++L++ S R + +
Sbjct: 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 5e-10
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 25/208 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----------RISGAAIKVHGKKAYVPQSS 668
I +G + G G+GKS++ +LG I + A VPQ
Sbjct: 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFD 86
Query: 669 WIQTG-TIRENIL-FGKDMRQSF--YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+ T+REN+L FG+ S E V+ +E AD ++ LSGG
Sbjct: 87 NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA-------LLSGG 139
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFL 783
K+R+ LARA+ ++ + I D+P + +D H HL + L LL++ KT+L TTH +E
Sbjct: 140 MKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEA 198
Query: 784 DA-ADLVLVMKDGKIEQSGKYEDLIADQ 810
+ D + V++ G+ G+ LI +Q
Sbjct: 199 ERLCDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 28/233 (12%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI------- 1276
VLKG++ I ++G +GSGKST ++ + + +PS G I+++G I+++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1277 ------GLQDLRSRLSIIPQDPMLFQG-TVRTNL--DPLE--QHSDQEIWEVINKCHLAE 1325
L+ LR+RL+++ Q L+ TV N+ P++ S QE E K +LA+
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAK 138
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNV-- 1382
+ ++ PV G GQ+Q V +AR L + +L+ DE T+++D V
Sbjct: 139 VGIDERAQGKYPVHLSG-----GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
I Q + EE V+T + + V+ L +GK+ E +P QL + S
Sbjct: 194 IMQQLAEEGKTMVVVTHEMGFARHVSSH-VIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGR 1265
E+++L V+ +LKG+ T GE ++G GSGKSTL + E + G
Sbjct: 5 EIKDLHVEVEGKKE-ILKGVNLTVKEGEVHA-IMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 1266 ILIDGVDISMIGLQDL----RSRLSIIP--QDPMLFQGTVRTNLDPL-----EQHSDQEI 1314
IL DG DI +L R+R I Q P+ G TN D L + + I
Sbjct: 63 ILFDGEDIL-----ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 1315 WEVINK--CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
K AE++ D+ L+ V E +S G+++ + ++LL + ++ +LDE
Sbjct: 116 LPEFIKELKEKAELLGLDEEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 1373 ASID-TATDNVIQ--QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
+ +D A V + +REE +IT R+ I D V VL +G++++
Sbjct: 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1297
IG++G G GK+T I+ L V++P G I I+ +S I ++G
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY-------IKAD----YEG 76
Query: 1298 TVRTNL-DPLEQHSDQEIW--EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354
TVR L + + E+ + +I+ D+ + + S G+ Q V
Sbjct: 77 TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL--DREVPEL---------SGGELQRVA 125
Query: 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID--ND 1410
+A L K I +LDE +A +D + + IR E + T V H I +ID D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLAD 184
Query: 1411 LVLVLDEGKVLEYD--SPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1455
++V + G+ +P Q L + F K + RR ++ R R
Sbjct: 185 RLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPR 230
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 59/181 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I G ++ + G G+GKS+LL I GE+ G
Sbjct: 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------------------------- 55
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
+ +G ++ ++E+ LSGG+K R+ LA+ +
Sbjct: 56 IVTWGSTVKIGYFEQ----------------------------LSGGEKMRLALAKLLLE 87
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDG 795
N ++ + D+P + +D + L L TV+ +H FLD A ++ ++DG
Sbjct: 88 NPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143
Query: 796 K 796
K
Sbjct: 144 K 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257
S + KI++ NL Y LK I + +G +G GKSTL++ R
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 1258 VVE--P---SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS 1310
+ E P + G IL+DG +I + LR+++ ++ Q P F ++ N+ +
Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL- 120
Query: 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPV--------AEDGENWSVGQRQLVCLARVLLKK 1362
+E +++ + E R + L A + + G + S GQ+Q +C+AR + +
Sbjct: 121 ----FEKLSRAEMDE--RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 1363 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
+L+LDE +++D + I++ I E TV+ V H
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 9e-10
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 31/225 (13%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
V++ ++ T + +G++G G+GK+T + +V G I+ID DIS++ L R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1284 RLSI--IPQDPMLFQG-TVRTNLDPL---------EQHSDQ--EIWEVINKCHLAEIVRQ 1329
R I +PQ+ +F+ +V NL + EQ D+ E+ E + HL + +
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-- 134
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
G++ S G+R+ V +AR L + ++LDE A +D + I++ I
Sbjct: 135 ------------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182
Query: 1390 -ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
S V+ H + + + ++ +G ++ + +P ++L+D
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VL + P + + VVGR+G GKSTL++ L + PS G +L L + R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEARE 81
Query: 1284 RLSIIPQDPMLFQ-GTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341
++ QD L V N+ L+ + + LA+ R + P A
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD------RANEWPAALS 135
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITV 1399
G GQ+Q V LAR L+ + +L+LDE ++D T +Q I + TV+ V
Sbjct: 136 G-----GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190
Query: 1400 AHRIP-TVIDNDLVLVLDEGKV---LEYDSPR 1427
H + V D VL+++EGK+ L D PR
Sbjct: 191 THDVSEAVAMADRVLLIEEGKIGLDLTVDLPR 222
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 42/223 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTG--- 673
+ +G VA+ G GSGKS+L + G + +G I V G ++ W Q G
Sbjct: 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMV-LSEETVWDVRRQVGMVF 87
Query: 674 ----------TIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGERGIN 720
T+++++ FG + EE++E AL Q +E + + +
Sbjct: 88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-------R 140
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-------TGTHLFKQCLMGLLSQKTV 773
LSGGQKQR+ +A + D+ I D+ S +D T L +Q + TV
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI------TV 194
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
L TH L+ AD V+VM G+I + G E+ I L
Sbjct: 195 LSITHDLDEAAQADRVIVMNKGEILEEGTPEE-IFKSGHMLQE 236
|
Length = 279 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-------- 671
I +GSK A+ G G+GKS+LL + G I +KV G++ W++
Sbjct: 28 IPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86
Query: 672 -------TGTIRENILFG-KDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVGERGINL 721
+ T+ +++ FG +M +EV AL + MW D + +L
Sbjct: 87 DPDDQVFSSTVWDDVAFGPVNMGLD-KDEVERRVEEALKA-VRMWDFRD-----KPPYHL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL 780
S GQK+R+ +A + + DV + D+P + +D G + L L +Q KTV+ TH +
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP-RGQETLMEILDRLHNQGKTVIVATHDV 198
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + AD V+V+K+G++ G L +
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 32/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------KKA-----Y 663
+++ G V + G G+GK++ I+G + SG I + K+A Y
Sbjct: 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK-ILLDDEDITKLPMHKRARLGIGY 83
Query: 664 VPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV---GERGI 719
+PQ + I T+ +NI+ ++R+ ++ L+ +E + + +
Sbjct: 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLE-----EFHITHLRDSKAY 138
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ L + VL T
Sbjct: 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI--QRIIKHLKDRGIGVLITD 196
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E LD D ++ DGK+ G E+++ N+E VR+
Sbjct: 197 HNVRETLDICDRAYIISDGKVLAEGSPEEIV---NNEDVRR 234
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKKA-----YVPQS 667
+G V + G G+GK++ I+G + SG + +H K+A Y+PQ
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRARLGIGYLPQE 83
Query: 668 SWIQTG-TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ I T+ ENIL K R+ EE+LE I + +
Sbjct: 84 ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE----EFHIT-------HLRKSKAS 132
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ +L + VL T
Sbjct: 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI--QKIIKILKDRGIGVLITD 190
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E L D ++ +GK+ G E++ A+ ELVR+
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN---ELVRK 228
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 99/522 (18%), Positives = 177/522 (33%), Gaps = 62/522 (11%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
F L + F +G + A + L + + + API D + ++ +
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL--FLVILGISIWYQAYYITT 1050
D + + +A AL I ++ + +F + +I+G + A+
Sbjct: 119 DIDQI-NAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAF---- 173
Query: 1051 ARELARMVGTRKAPIL-----HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC-VTF 1104
+ A H GA ++ +H I + + +
Sbjct: 174 ---MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSF--AHGAIQESANNIAD 228
Query: 1105 HNCGTMEWLCLRINLLFNFAFFLVLIILVTLPR--SAIDPSLAGLAATYGLNLNVLQ--- 1159
+ + N FFL++ + ++ID AA L +L
Sbjct: 229 LHIIEILIFIAAENF-GQLLFFLLIGCALFAAAMFASIDA-----AAISAFVLALLYIKG 282
Query: 1160 --AWVIWNLCNVENKMISVERILQFT---NIPSEAPLVIKNSRPSPEWP--SSGKIELEN 1212
++ L + I+ +R+ F N P + S IEL++
Sbjct: 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342
Query: 1213 LLVQYNP-----TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
V NP + L I + +VG G GKSTL + + P G IL
Sbjct: 343 --VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
+DG +S D R S I D LF + D E S + + + +A+ V
Sbjct: 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DEGEHASLDNAQQYLQRLEIADKV 458
Query: 1328 RQDQRLLDAPVAEDG-----ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
+ EDG S GQ++ + L L+ + IL+ DE A D A
Sbjct: 459 K----------IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRF 508
Query: 1383 IQQTIREETSR--CTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
+ + + R T+I ++H D ++ L G +++
Sbjct: 509 FYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 37/267 (13%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G N ++ I+ P + +G +G G+GKST ++ L ++ P+
Sbjct: 19 EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS 78
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSD----QEIWEVI 1318
G++ ++G D R R + ++ + L L + I+E+
Sbjct: 79 GKVRVNGKD-------PFRRREEYLRSIGLVM--GQKLQLWWDLPALDSLEVLKLIYEIP 129
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATA 1373
+ AE + +LD E W S+GQR LA LL ++L LDE T
Sbjct: 130 DD-EFAERLDFLTEILDL---EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185
Query: 1374 SIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDNDL------VLVLDEGKVLEYDS 1425
+D I++ ++E TV+ H I +D+ VL++D+G+++ +D
Sbjct: 186 GLDVNAQANIREFLKEYNEERQATVLLTTH-----IFDDIATLCDRVLLIDQGQLV-FDG 239
Query: 1426 PRQLLEDNSSSFSKLVAEFLRRTSKSN 1452
L++ + + E + S S
Sbjct: 240 TLAQLQEQFGPYKEFSVELKQAKSLSQ 266
|
Length = 325 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL---GEIP--RISGAAIKVHGKKAYVP------- 665
MKI K A+ G G GK++LL SI IP R+ G I G+ Y P
Sbjct: 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVTEY 82
Query: 666 --------QSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
Q +I +N+ FG K EE L+ AL +++
Sbjct: 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK----- 137
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
S + + G LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ L L
Sbjct: 138 --SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP-IATQRIEKLLEELSE 194
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + + + AD + M G++ + G +++ ++L +
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEE 243
|
Length = 250 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF- 681
G + V G GSGK++LL + G P ++G + Q +I +L+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL-------LNGGPLDFQRDSIARGLLYL 78
Query: 682 ----GKDMRQSFYEEVLEGCALNQDIEMW---ADGDLSVVGERGIN-LSGGQKQRIQLAR 733
G S E + A + D ++ A L+ +R + LS GQ++R+ LAR
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALAR 138
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQ 779
+ S ++I D+P +A+D G F + + G ++ V+ TTHQ
Sbjct: 139 LLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD- 1291
GE +G++G G+GK+TL++A+ ++ P+ G + + G + +PQ
Sbjct: 5 KGEL-LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVPQRH 58
Query: 1292 ------PMLFQGTV---RTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
P+ TV RT + + + V L D PV E
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR--DALRRVGL-TELADRPVGE-- 113
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAH 1401
S GQRQ V +AR L + +L+LDE +D T ++ + E + ++ H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 1402 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
+ + +VL G+V+ +P+QL +
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
K KG VA+ G G+GKS+L G I + + + + G+ + S ++ +R+
Sbjct: 24 KAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSLLE---VRKT 79
Query: 679 --ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGI------NLS 722
I+F Q F V E A LN +++E L VG G +LS
Sbjct: 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQK+R+ +A + ++ + D+P S +D + + K L+ L+++ T++ +TH +
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDLNKEGITIIISTHDV 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + AD V VM DGKI + G +++ +D E +R+
Sbjct: 198 DLVPVYADKVYVMSDGKIIKEGTPKEVFSD--IETIRK 233
|
Length = 275 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP----QSSWI--QTG--- 673
G + + G GSGK++LL I G +P +G IK+ G P ++ +
Sbjct: 28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYLGHRNAMKP 86
Query: 674 --TIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
T+ EN+ F + LE L + L LS GQK+R
Sbjct: 87 ALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLA-----HL-----PFGYLSAGQKRR 135
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHT 755
+ LAR + SN ++I D+P +A+DA
Sbjct: 136 VALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 39/236 (16%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-----MIGL 1278
LK I+ +++G++G G+GKSTL++ + + +P+ G++ + G ++ G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELGAGF 100
Query: 1279 Q-DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
+L R +I + L G R + D+++ E+I L + +D P
Sbjct: 101 DPELTGRENIYLR--GLILGLTR-------KEIDEKVDEIIEFAELGD-------FIDQP 144
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA----TDNVIQQTIREETSR 1393
V + +S G + + + IL+LDE A D A + + + +
Sbjct: 145 V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-- 198
Query: 1394 CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
T++ V+H + + D + L+ G++ SP +++ ++ + +A+ L
Sbjct: 199 -TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP----AYEEDLADRLSLN 249
|
Length = 249 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 35/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G GSGKS+LL I ++ I+ + V G K P+ + IR+
Sbjct: 22 LNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPK---VDERLIRQ 77
Query: 678 N--ILFGKDMRQSFY--------EEVLEG-----CALNQDIEMWADGDLSVVG--ERG-- 718
++F Q FY E V+ G A ++ E A L+ VG ER
Sbjct: 78 EAGMVF-----QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVL 774
LSGGQ+QR+ +ARA+ + +FD+P SA+D + K +M L+++ T++
Sbjct: 133 YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--VMQDLAEEGMTMV 190
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
TH++ F A ++ + G+I + G + LI + S+ +++ H
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQH 238
|
Length = 240 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 1240 VVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDISMIGLQD---LRSRLSIIPQD 1291
++G +G GKST ++A+ R+ + PS G ++ DG DI D LR ++ ++ Q
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG-KFTDEVLLRKKIGMVFQK 128
Query: 1292 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR---LLDAPVAEDGEN---W 1345
P F ++ N+ + + +K L EIV + R L D +N
Sbjct: 129 PNPFPKSIFDNI-----AYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL 183
Query: 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPT 1405
S GQ+Q +C+AR L + IL+LDE T+++D I+ I+E T++ V H +
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243
Query: 1406 VID-NDLVLVLDEGKVLEYDSPRQLL 1430
+D + EG ++E+ QL
Sbjct: 244 ASRVSDYTMFFYEGVLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 35/225 (15%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMI---GLQDLRS-RLSIIPQ 1290
+G+VG +GSGKS AL ++ +G G +G +I + L LR+ ++S+I Q
Sbjct: 45 LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQ 104
Query: 1291 DPMLFQGTVRTNLDPLEQHSDQ--EIWEVINKCHLAEIVRQDQRLLDA---PVAEDGEN- 1344
DPM T+L+P + +Q E+ + AE + R+LDA P A
Sbjct: 105 DPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157
Query: 1345 ----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE---ETSR---C 1394
+S G RQ V +A LL + ++L+ DE T TA D +Q I E R
Sbjct: 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPT----TALDVTVQAQIMTLLNELKREFNT 213
Query: 1395 TVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
+I + H + V D VLV+ G+ +EY + R + S +S
Sbjct: 214 AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYS 258
|
Length = 330 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+G + + G GSGKS+L ++L IP R G I +K P +Q
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ----- 366
Query: 677 ENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVG---ERGIN-------- 720
++F R + + + EG +++ A+ D V+ E G++
Sbjct: 367 --VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC----LMGLLSQK--- 771
SGGQ+QRI +ARA+ ++ + D+P SA+D Q L+ L QK
Sbjct: 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGL 478
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ L+ +H L + A V+VM+DGKI + G E + A+ E R + A
Sbjct: 479 SYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
|
Length = 534 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ L+ + +Y LPM + + ++G +G+GKSTL+ + +EP+ G I
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTN----LDP---LEQHSDQEIWEVIN 1319
++ + GL + +S++ Q+ LF TVR N L P L +++ +
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ 114
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
+ +A+ + RL E S GQRQ V LAR L++ IL+LDE +++D
Sbjct: 115 QVGIADYL---DRL--------PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
Query: 1380 DN----VIQQTIREETSRCTVITVAHRIPTVIDN-DLVLVLDEGKV 1420
+++Q E + T++ V H + + V+ +GK+
Sbjct: 164 REEMLALVKQLCSER--QRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------KAYVPQSSWI--QTG- 673
G + + G G+GK++LL + G + R + G+ ++Y ++ Q G
Sbjct: 28 GEALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 674 ----TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSG 723
T EN+ F + S + AL Q VG G+ LS
Sbjct: 87 KTELTALENLHFWQRFHGSGNAATIWE-ALAQ------------VGLAGLEDLPVGQLSA 133
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR S + ++I D+PF+A+D L L++ VL TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQGGIVLLTTH 188
Query: 779 QLEFLDAADLVLV 791
Q + +A + +
Sbjct: 189 QPLPIASAQIRRL 201
|
Length = 209 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 54/283 (19%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGR 1265
IE++NL +++ VLK I+ T + +G++GR+G+GKS L+ L + EP+ GR
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1266 IL---------------------------------IDGVDISMIGLQDLRSRLSIIPQDP 1292
I+ +D ++S + +R R++I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1293 MLFQG--TVRTN-LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349
G TV N L+ LE+ + V L E+V+ R+ +A D S G+
Sbjct: 119 FALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH--IARD---LSGGE 173
Query: 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVI 1407
+Q V LAR L K+ + + DE T ++D T ++ + E + S +++ +H P VI
Sbjct: 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVI 232
Query: 1408 DN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
++ D + L+ G++ E +P ++ + F + V+E +
Sbjct: 233 EDLSDKAIWLENGEIKEEGTP----DEVVAVFMEGVSEVEKEC 271
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQK+R+ +A + ++ IFD+P + +D + + L + KTV TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 781 E-FLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
E L+ AD V+VM GKI ++G ++ DQ
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 34/243 (13%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITC-TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
S I+ N+ +Y L V+ G++ GE G++G G+GK+T ++ L + P
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGEC-FGLLGPNGAGKTTTLRMLLGLTHPD 60
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQ----DPMLFQGTVRTNLDPLEQH---SDQEIW 1315
G I + G + R R+ ++PQ DP TVR NL ++ S
Sbjct: 61 AGSISLCGEPVPSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAAR 116
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
++ L E + + + DA V E S G ++ + LAR L+ +LVLDE T +
Sbjct: 117 ALVPP--LLEFAKLENKA-DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169
Query: 1376 DTATDNVIQQTIREETSRCTVITV-------AHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1428
D +++ + +R +R I + A R+ D + V++EG+ + +P
Sbjct: 170 DPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHA 224
Query: 1429 LLE 1431
L+E
Sbjct: 225 LIE 227
|
Length = 306 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 46/241 (19%)
Query: 1172 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITC 1230
K+ + + P E + P P +E EN+ Y+ +LK ++
Sbjct: 289 KLEARLAEER----PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRL-LLKDLSF 343
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI--I 1288
+I +VG G+GKSTL++ L + P G + + + I
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-------------GETVKIGYF 390
Query: 1289 PQDPMLFQGTVRTNLDPLEQHSD--QEIWEVINKCHLA------EIVRQDQRLLDAPVAE 1340
Q + + + LE+ S+ + E + +L E + +L
Sbjct: 391 DQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVL------ 440
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400
S G++ + LA++LL+ +L+LDE T +D + +++ + + TV+ V+
Sbjct: 441 -----SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG--TVLLVS 493
Query: 1401 H 1401
H
Sbjct: 494 H 494
|
Length = 530 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
LKG+ T + I ++G +G GKSTL+ + + +P+ G ++++G I+ G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1285 LSIIPQDPMLFQG-------TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
P ++FQ TVR N+ + + ++K IV + L+
Sbjct: 54 ----PDRMVVFQNYSLLPWLTVRENI----ALAVDRVLPDLSKSERRAIVEEHIALVGLT 105
Query: 1338 VAEDGE--NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSR 1393
A D S G +Q V +AR L + ++L+LDE ++D T +Q+ + + E R
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1394 CTVITVAHRI-PTVIDNDLVLVLDE------GKVLEYDSPR 1427
TV+ V H + ++ +D V++L G++LE PR
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPR 206
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 29/255 (11%)
Query: 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKI--------------GVVGR 1243
E G E + + T+ + L G++ ++ G+K + G++G
Sbjct: 17 SPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGP 75
Query: 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ-DPMLFQGTVRTN 1302
G+GKST+ + + + P G+I + GV + + R+R+ ++PQ D + + TVR N
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVREN 134
Query: 1303 LDPLEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359
L ++ S +EI VI L E R + + DA V++ S G ++ + LAR L
Sbjct: 135 LLVFGRYFGMSTREIEAVIPS--LLEFARLESKA-DARVSD----LSGGMKRRLTLARAL 187
Query: 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDE 1417
+ ++L+LDE T +D ++I + +R +R I + + D + VL+
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 1418 GKVLEYDSPRQLLED 1432
G+ + P L+++
Sbjct: 248 GRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKKA------------YVPQSSWIQTGTIRENIL 680
G+GK++L+ + P SG I++ G+ Y+PQ
Sbjct: 35 GAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQ-----------EFG 82
Query: 681 FGKDMRQSFYEEVLEGCALNQDI----------EMWADGDLSVVGERGIN-LSGGQKQRI 729
+ E L+ A + I E+ +L ++ I LSGG ++R+
Sbjct: 83 VYPNFTV---REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+A+A+ + + I D+P + +D F+ L L + V+ +TH +E +++ +
Sbjct: 140 GIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQ 198
Query: 789 VLVMKDGKIEQSG 801
V V+ GK+ G
Sbjct: 199 VAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVP----QS 667
+ + G VG+G++ L ++ G P SG I + GK AYVP
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGE-ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 668 SWIQTGTIRENILF---GKDMRQSFY---EEVLEGCALNQDIEMWADGDLSVVGERGINL 721
+ +I ENI + R+ +E + + + +G L
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TL 402
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYT 776
SGG +Q++ LAR + ++ V I D+P +D G K + L+ + K +L
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGID--VGA---KAEIYRLIRELAAEGKAILMI 457
Query: 777 THQL-EFLDAADLVLVMKDGKI 797
+ +L E L +D +LVM++G+I
Sbjct: 458 SSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 5e-09
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 61/233 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAI----------------KVH 658
++ KG + + G GSGKS L +I+G +P RI G I K+
Sbjct: 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIR 86
Query: 659 GKK-AYVPQSSWIQTG-----TIRENIL------FGKDMRQSFYEEVLEGCALNQDIEMW 706
GK+ A + Q T TI + I ++ E +E L
Sbjct: 87 GKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIE--LLEL----- 137
Query: 707 ADGDLSVVG----ERGIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757
VG ER + LSGG +QR+ +A A+ N + I D+P +A+D
Sbjct: 138 -------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 758 HLFKQCLMGLLSQK--TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLI 807
+ L L +K ++ TH L + + AD V VM G+I + G E++
Sbjct: 191 QILDL-LKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 53/225 (23%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ +G +VA+ G G+GKS+LL+ I G + SG+ + ++G+ + P S Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALN-------QDI--EMWADGDLS-VVGER 717
T+ +NI G + G LN I +M + L+ + G+
Sbjct: 81 NLFSHLTVAQNIGLGLN----------PGLKLNAAQREKLHAIARQMGIEDLLARLPGQ- 129
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QK 771
LSGGQ+QR+ LAR + + + D+PFSA+D +Q ++ L+S Q
Sbjct: 130 ---LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRQEMLTLVSQVCQERQL 181
Query: 772 TVLYTTHQLEFLDAADLV---LVMKDGKIEQSGKYEDLIADQNSE 813
T+L +H LE DAA + LV+ DG+I G ++L++ + S
Sbjct: 182 TLLMVSHSLE--DAARIAPRSLVVADGRIAWDGPTDELLSGKASA 224
|
Length = 232 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-09
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGG-------------RILIDGVDISMIGLQDLR-S 1283
+ +VG +GSGKS AL R++E +GG R +I+ + S ++ +R +
Sbjct: 45 LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGA 104
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA----EIVRQDQRLLDA--- 1336
+++I Q+PM T+L+P+ +Q I E I + H E + + +R+LD
Sbjct: 105 DMAMIFQEPM-------TSLNPVFTVGEQ-IAESI-RLHQGASREEAMVEAKRMLDQVRI 155
Query: 1337 PVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--E 1389
P A+ S G RQ V +A L + +L+ DE T ++D I Q I+ +
Sbjct: 156 PEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 215
Query: 1390 ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429
+ VI + H + V + D VLV+ +G+ +E S Q+
Sbjct: 216 KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 51/213 (23%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+LK I+ +F PG KIGV+G G+GKSTL+ RI+ GVD G
Sbjct: 20 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL------------RIMA-GVDKEFNGEARPA 65
Query: 1283 SRLSI--IPQDPMLFQG-TVRTN-----------LDPLEQHSDQ---------------- 1312
+ + +PQ+P L TVR N LD + S +
Sbjct: 66 PGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
E+ E+I+ ++ R+ + +DA P D S G+R+ V L R+LL K +L+L
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLL 185
Query: 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
DE T +D + ++Q ++E TV+ V H
Sbjct: 186 DEPTNHLDAESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1277
LK I + P + ++G +G GKST I+ L +++ P+ G + +G +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
L +LR + ++ Q F ++ N+ P I NK L EIV ++ L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIV--EKSLKD 138
Query: 1336 APVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1387
+ ++ ++ S GQ+Q +C+AR L +L++DE T+++D + I++ I
Sbjct: 139 VALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
Query: 1388 REETSRCTVITVAH 1401
+ + T++ V H
Sbjct: 199 LKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-09
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AY-----------VP 665
+I KV + G GSGKS+LL + + + + G I+V+G++ AY +P
Sbjct: 1332 RIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + GT+R+N+ ++ EV LE L + + ++G S V E G N S
Sbjct: 1391 QDPVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GQ+Q + +ARA+ +I D +A + +M S TV+ H+L
Sbjct: 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+ D ++VM G + + G +L+ ++ S
Sbjct: 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537
|
Length = 1560 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 7e-09
Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 25/240 (10%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1261
K+E +NL + Y L I K ++G +G GKST ++ L R+ +
Sbjct: 4 KMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1262 SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPL------EQHSD 1311
G +L+DG +I + + +LR R+ ++ Q P F ++ N+ P ++ D
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
+ + + K L + V+ D + + S GQ+Q +C+AR + K ++++DE
Sbjct: 122 KIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1372 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430
T+++D + I+ + E T++ V H + +D G ++E++ ++
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-09
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ KG A+ G G+GKS+L+ + G SG I+V GK+ V
Sbjct: 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGMV 84
Query: 665 PQS-SWIQTGTIRENILFGK--------DMRQSFYEEVLEGCA-LNQDIEMWAD-GDLSV 713
Q + T T+ ENI+ G D RQ+ + E ++ A DLSV
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA-RARIKELSERYGLPVDPDAKVADLSV 143
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
G++QR+++ +A+Y + + I D+P + + LF+ ++ L+ K
Sbjct: 144 ----------GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGK 191
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
T+++ TH+L E + AD V V++ GK+ G + + EL M L V P
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKV--VGTVDPVAETTEEELAELMVGREVVLRVVKP 249
Query: 831 P 831
P
Sbjct: 250 P 250
|
Length = 501 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 593 IEAGEYAWDAREEN-FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI-----LG 645
+GE +AR+ N F L D M I + A+ G G GKS+ L I L
Sbjct: 33 ASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI 92
Query: 646 EIPRISGAAIKVHGKKAY---------------VPQSSWIQTGTIRENILFGKDMR---- 686
+ R+ G + GK Y V Q +I +N+ +G ++
Sbjct: 93 DAARVEGE-LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG 151
Query: 687 --QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
EE L AL +++ D G++LSGGQ+QR+ +ARA+ + +V +
Sbjct: 152 DIDERVEESLRRAALWDEVKDQLD-------SSGLDLSGGQQQRLCIARAIAPDPEVILM 204
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMK 793
D+P SA+D T + + L + TV+ TH ++ FL +LV
Sbjct: 205 DEPASALDP-VATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
Query: 794 DGKI---EQSGKYEDLI 807
KI +S + ED I
Sbjct: 264 TDKIFENPESQRVEDYI 280
|
Length = 285 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-09
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFR------VVEPSGGRILIDGVDISMI 1276
+KGI+ GE + +VG +GSGKS ++ PSG IL DG D+
Sbjct: 25 AVKGISFDIEAGET-LALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAA 82
Query: 1277 GLQDLR----SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCH---------- 1322
+ LR +++ +I Q+PM T+L+PL Q + EV+ + H
Sbjct: 83 SERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQ-LAEVL-RLHRGLSRAAARA 133
Query: 1323 ----LAEIV--RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
L E+V + ++ LDA E S GQRQ V +A L + +L+ DE T ++D
Sbjct: 134 RALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
I ++E ++ + H + V D V V+ G+++E + L
Sbjct: 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 9e-09
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 18/238 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKK---IGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I+ E + Y P P + + KK ++G TGSGKSTL+Q L +++P+ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1265 RILIDGVDISMIGLQD----LRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE 1316
++ + + +S Q +R ++ ++ Q P LF+ TV ++ P +E E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
I L + D+ +P G GQ + V +A +L + +LVLDE TA +D
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSG-----GQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1377 TATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
+ Q S TV+ V H + V D D V +L++G ++ +P + ++
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 9e-09
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 1154 NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK---NSRPS------PEWPS 1204
NLN L A I++ NK +R + +P + +K N + + ++
Sbjct: 21 NLNELDAKAIYDEFQKLNKY---QRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNH 77
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---VEP 1261
+ E+ N Y VL + K +G +G GKST ++ L ++ +E
Sbjct: 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137
Query: 1262 SG--GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS---DQEI 1314
+ G I G + I +LR+R+ ++ Q P F+ ++ N+ +++ D++I
Sbjct: 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKI 197
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
E I + L D+ D A G S GQ+Q +C+AR + + +L++DE T++
Sbjct: 198 LEKIVEKSLKSAALWDEVKDDLDKA--GNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 1375 IDTATDNVIQQTIREETSRCTVITVAHRI 1403
+D I++ I E + ++I V H +
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL + L R+ G + + GK Y P+ ++
Sbjct: 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE-VLLDGKNIYDPKVDVVEL 86
Query: 672 --------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
+I +N+ +G K++ + E L+ AL W +
Sbjct: 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAAL------WDE- 138
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 139 ----VKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEELIT 193
Query: 766 GLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ AA D G++ + G + +
Sbjct: 194 ELKKKYTIVIVTHNMQ--QAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KAYVPQSSWIQTGTIRE 677
+G +A+ G GSGKS+L + G I SG I ++ Y +S I+
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-ILINDHPLHFGDYSFRSKRIRMIFQDP 96
Query: 678 NILFGKDMRQSFYEEVLEG-CALNQDIEMWADGD-----LSVVG------ERGIN-LSGG 724
N +R ++L+ LN D+E L +VG + L+ G
Sbjct: 97 NTSLNPRLRIG---QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE 781
QKQR+ LARA+ + I D+ +++D + L LM L +K + +Y T +
Sbjct: 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVTQHIG 211
Query: 782 FLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +D VLVM +G++ + G D++A EL +++
Sbjct: 212 MIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRL 249
|
Length = 267 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 1e-08
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 76/236 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ +G VA+ G G+GK++LL +I+G + SG I G+ AY
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR-IIFDGEDITGLPPHERARLGIAY 82
Query: 664 VPQSSWI-QTGTIRENILFG------KDMRQSFYEEVLE-----GCALNQDIEMWADGDL 711
VP+ I T+ EN+L G K+ ++ EEV E NQ
Sbjct: 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQ---------- 132
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---- 767
R LSGG++Q + +ARA+ S + + D+P GL
Sbjct: 133 -----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPS----------------EGLAPKI 171
Query: 768 ----------LSQK---TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
L ++ T+L F L+ AD V+++G+I SG +L+AD
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 41/251 (16%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665
+ ++ L G ++ + G G+GKS+LL + GE+ SG + G + Y+
Sbjct: 19 LENVSLTLNP------GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLS 72
Query: 666 QSSWIQTG-TIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMW-AD 708
Q + T+ + ++ G + E + E AL ++++ W +
Sbjct: 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 709 GDLSVVGER-GI--------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759
G +LSGG ++R+ LARA+ D+ + D+P + +D + L
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL 192
Query: 760 FKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIADQNSELVR 816
L TV+ +H FLD A +L + GK+ G Y + +Q +E +R
Sbjct: 193 EDY----LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL-EQKAERLR 247
Query: 817 QMKAHRKSLDQ 827
Q A + +
Sbjct: 248 QEAAAYEKQQK 258
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPS-GGRILIDG--VDISMIGLQDLRSRLSIIPQD--- 1291
+GV G G+G++ L+QALF G + I+G VDI Q +R+ ++++P+D
Sbjct: 289 LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKR 347
Query: 1292 ----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL------DAPVAED 1341
P+L G T L L+ + L I QRL P+
Sbjct: 348 HGIVPILGVGKNIT-LSVLKSFC--FKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-- 402
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVA 1400
S G +Q LA++LL R+L+LDE T +D I + I + +I V+
Sbjct: 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460
Query: 1401 HRIPTVID-NDLVLVLDEGKV 1420
+ V+ +D VLV+ EGK+
Sbjct: 461 SELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ-DPMLFQG 1297
G++G G+GKST+ + L ++ P G+I + G + + R + ++PQ D + +
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEF 92
Query: 1298 TVRTNLDPLEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354
TVR NL ++ S +EI VI L E R + + D VA S G ++ +
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPS--LLEFARLESKA-DVRVAL----LSGGMKRRLT 145
Query: 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLV 1412
LAR L+ ++L+LDE T +D ++I + +R +R I + + D +
Sbjct: 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205
Query: 1413 LVLDEGKVLEYDSPRQLLED 1432
VL+ G+ + P L+++
Sbjct: 206 CVLESGRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 630 GSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRE 677
G G+GK++ L +LG P + G + + A VPQ + T+RE
Sbjct: 40 GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99
Query: 678 NIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
N+L FG+ + + ++ +E AD VGE LSGG K+R+ LARA
Sbjct: 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---VGE----LSGGMKRRLTLARA 152
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAA----DLV 789
+ ++ DV + D+P + +D HL + L LL++ KT+L TTH F++ A D +
Sbjct: 153 LVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH---FMEEAERLCDRL 208
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
V+++G+ G LI +
Sbjct: 209 CVIEEGRKIAEGAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-------TV 773
LSGGQ+QR+ + RA+ V++FD+P S +DA L Q M L Q+ T
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA----KLRVQ--MRLEIQRLHRRLKTTS 188
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
LY TH Q+E + AD V+VM G EQ G
Sbjct: 189 LYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 1203 PSSGKIELENLLVQYNPTLPM------VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL 1255
P+ IE+ +L + T+ +LKG+ GE + +VG +GSGKSTL+ L
Sbjct: 2 PAENIIEVHHL----SKTVGQGEGELSILKGVELVVKRGET-VAIVGPSGSGKSTLLAVL 56
Query: 1256 FRVVEPSGGRILIDGVDISMI---GLQDLRSR-LSIIPQDPMLFQG-TVRTNLD-PLEQH 1309
+ +PS G + + G + + LR+R + + Q L T N+ PLE
Sbjct: 57 AGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116
Query: 1310 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
+ L E V +RL P G G++Q V LAR + +L D
Sbjct: 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSG-----GEQQRVALARAFAGRPDVLFAD 171
Query: 1370 EATASIDTAT 1379
E T ++D AT
Sbjct: 172 EPTGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 40/223 (17%)
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-- 1260
P E+E + V Y L +V + P +K I +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1261 PSG---GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTV-------------RTN 1302
P GR+L +I S I LR ++ ++ Q P F ++ + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1303 LDPLEQHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360
LD L + S + IWE + +D+ + E G S GQ+Q +C+AR +
Sbjct: 134 LDELVEDSLRRAAIWEEV----------KDK------LKEKGTALSGGQQQRLCIARAIA 177
Query: 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
K +L++DE +++D + +++ E + T+I V H +
Sbjct: 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 51/228 (22%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1280
VL ++ + + + ++GR+G GKSTL + L + PS G + G ++ + +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1281 LRSRLSIIPQDPMLF---QGTVR----------TNLDPLEQ-HSDQEIWEVINKCHLAEI 1326
R + ++ QD + + TVR +LD E+ E +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE---------MLRA 137
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD-NVIQQ 1385
V D +LD + S GQ Q VCLAR L + ++L+LDEA +++D VI+
Sbjct: 138 VDLDDSVLDKRPPQ----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 1386 --TIREET-SRCTVIT--------VAHRIPTVIDNDLVLVLDEGKVLE 1422
++++ + C IT R V+V+D G+++E
Sbjct: 194 LKKLQQQFGTACLFITHDLRLVERFCQR---------VMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 1e-08
Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 30/246 (12%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1263
I++++L YN + ++GI+ K ++G +G GKST I+ L R+ E G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1264 -GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1320
G + G +I I + LR ++ ++ Q P F ++ N+ I + +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVLDEAT 1372
L EIV + L A + ++ ++ S GQ+Q +C+AR L K ++L++DE
Sbjct: 121 ADLDEIV--ESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPT---VIDNDLVLVLDE---GKVLEYDSP 1426
+++D +++ I S T+ V H + V D DE G+++E+
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 1427 RQLLED 1432
Q+ +
Sbjct: 239 TQIFSN 244
|
Length = 259 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ + G +A+ G G GKS+LL + I SG + G+ +Y
Sbjct: 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYC 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + T+ +N++F +R + A + +A D S++ + LSGG
Sbjct: 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRA----AALDLLARFALPD-SILTKNITELSGG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH-QLE 781
+KQRI L R + + + D+ SA+D ++ + + ++ VL+ TH + +
Sbjct: 138 EKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQNVAVLWITHDKDQ 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD V+ ++ G
Sbjct: 197 AIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
+ +L + Y L+ ++ T + + V+G +G GK+TL+ + V PS G I ++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1328
G I G + ++ Q+ L V N+ Q I K EI
Sbjct: 66 GRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRG------IEKAQRREIAH 114
Query: 1329 QDQRLLDAPVAEDGENW--SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386
Q L+ AE W S G RQ V +AR L + ++L+LDE ++D T +Q+
Sbjct: 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 1387 I 1387
+
Sbjct: 175 L 175
|
Length = 259 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-08
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 40/183 (21%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG--- 682
V + G VG+G++ L ++ G P SG I + GK + + R+ I G
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKP--------VTRRSPRDAIRAGIAY 79
Query: 683 --KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740
+D R+ EG L+ + ++++ LSGG +Q++ LAR + +
Sbjct: 80 VPED-RKR------EGLVLDLSVAE----NIAL----SSLLSGGNQQKVVLARWLARDPR 124
Query: 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-EFLDAADLVLVMKD 794
V I D+P VD K + L+ + K VL + +L E L D +LVM +
Sbjct: 125 VLILDEPTRGVDVGA-----KAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179
Query: 795 GKI 797
G+I
Sbjct: 180 GRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 25/201 (12%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSRLSIIP 1289
PGE + G +G+GKSTL++ + + PS G+I G DI+ + ++ LR ++ +I
Sbjct: 27 PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 1290 QD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWS 1346
QD +L TV N+ PL +I +I R+ LD + + +N+
Sbjct: 86 QDHHLLMDRTVYDNVAIPL----------IIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 1347 V----GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVA 1400
+ G++Q V +AR ++ K +L+ DE T ++D A I + + EE +R TV+
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMAT 194
Query: 1401 HRIPTVID-NDLVLVLDEGKV 1420
H I + + +L L +G +
Sbjct: 195 HDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
+ P+W +EL N+ Y + I T + + ++G GSGKSTL L
Sbjct: 314 PQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
+ +P G IL+DG ++ +D R S + D LF L P + ++ +
Sbjct: 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL----LGPEGKPANPALV 425
Query: 1316 EV-INKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
E + + +A + +D R+ + S GQ++ + L L +++ IL+LDE A
Sbjct: 426 EKWLERLKMAHKLELEDGRISNL-------KLSKGQKKRLALLLALAEERDILLLDEWAA 478
Query: 1374 SID 1376
D
Sbjct: 479 DQD 481
|
Length = 547 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 1239 GVVGRTGSGKSTLIQALFRV--VEPSG---GRILIDGVDISMIGLQD--LRSRLSIIPQD 1291
++G +G GK+T ++A+ R+ + P GRIL+DG DI + +R R+ ++ Q
Sbjct: 34 ALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93
Query: 1292 PMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR---LLDA---PVAEDGEN 1344
P F +V N+ + ++ + ++ HL E+ + R L D +
Sbjct: 94 PNPFPTMSVFDNV-----VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG 148
Query: 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
S GQ+Q +C+AR L + IL++DE T+++D A+ I+ + + T+I V H +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K A G G GKS+LL L + RI G I++ G+ Y + +
Sbjct: 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKK---VDV 101
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSV--------------- 713
+R + +F + +S YE V+ G L Q I D +V
Sbjct: 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRL-QGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 714 -VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
+ E LSGGQ+QR+ +ARA+ +V + D+P SA+D + L + L+ L K
Sbjct: 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST--LKIEELITELKSKY 218
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 219 TIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---------RISGAAIKVHGKKAYVPQSS 668
+ I G VA+ G GSGKS+LL + G I + G ++ G+ A + S
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 669 WIQTG------------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG- 715
TG ++ EN+L G F+ Q A L+ VG
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR--ALQALTRVGM 142
Query: 716 -----ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + V + D+P +++D + + +M L
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA-----RIVMDTLRD 197
Query: 771 ------KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
TV+ T HQ+++ L + ++ ++ G + G + ++ L R +
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
|
Length = 262 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+KI + A+ G G GKS+LL + L E R+ G +++ G+ Y P I+
Sbjct: 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDPIE- 82
Query: 673 GTIRENILFGKDMRQSF-----YEEVLEGCALNQ---------DIEMWA-------DGDL 711
+R + F Y+ V G LN + WA D
Sbjct: 83 --VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK 140
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + NLSGGQ+QR+ +ARA+ + + D+P + +D GT ++ L L +
Sbjct: 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFELKKEY 199
Query: 772 TVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + GK+ + G + + EL +
Sbjct: 200 TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEK 246
|
Length = 253 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFKQC--LMGLLSQKTV 773
LSGGQKQR+ +ARA+ SN V + D+ SA+D T T L K +GL T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-TRSILELLKDINRELGL----TI 194
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH+++ + D V V+ G++ + G ++ + L R+
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
Length = 343 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN- 678
I GS VA+ G GSGKS+LL + G + SG + + G++ + +R+
Sbjct: 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTI-GERVITAGKKNKKLKPLRKKV 87
Query: 679 -ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVG------ERG-INLS 722
I+F Q F E V + +N +D + A + +VG R LS
Sbjct: 88 GIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQ +R+ +A + +V + D+P + +D G + L +K T + TH +
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKGLTTVLVTHSM 206
Query: 781 EFLDAA---DLVLVMKDGKIEQSGKYEDLIAD 809
E DAA D ++VM G + G ++ AD
Sbjct: 207 E--DAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ I KG A+ G GSGKS+L +I+G ++ I G
Sbjct: 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------------- 63
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQ----DIEMWADGDLSVVGERGIN--LSGGQKQRIQ 730
E+I D+ E G L +I + D R +N SGG+K+R +
Sbjct: 64 EDIT---DL--PPEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNE 114
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQLEFLDA--AD 787
+ + + D+ I D+P S +D L + + L + VL TH LD D
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPD 173
Query: 788 LVLVMKDGKIEQSG 801
V V+ DG+I +SG
Sbjct: 174 RVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA-----------AIKVHGKKAYVPQS 667
+ KG V G G+GKS+ + I G +P SG+ +V Y+P+
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83
Query: 668 SWIQTGT-IRENILFGKDMRQSFYEEVLEGCALNQDI-EMWADGDLSVVGERGIN-LSGG 724
+ + +RE + F + ++G L Q + EM L + I LS G
Sbjct: 84 NPLYLDMYVREYLQFIAGIYG------MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LA+A+ + V I D+P + +D + + + + + KT++ +TH ++ ++
Sbjct: 138 YRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQEVE 196
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIA 808
A D V+++ GKI K ++L A
Sbjct: 197 AICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 47/205 (22%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
A N + + I V V G GSGKS+L++ L SG A +
Sbjct: 5 GANVHNLQN------LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFL 54
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
+ I + L Q + L L Q +
Sbjct: 55 PKFSRNK------LIFIDQL------QFLIDVGLGYLTLGQKLS---------------T 87
Query: 721 LSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTT 777
LSGG+ QR++LA ++S ++I D+P + + L + + GL+ TV+
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIE 146
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H L+ L +AD ++ G + GK
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 39/205 (19%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
GI TFPG K + ++G G+GKSTL++ L +P G ILIDG
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 1272 DISMIGLQD-LRSRLSIIPQD----PMLFQGTVRTNLDPLEQ--HSDQEIWEVINKCHLA 1324
++ L + ++II Q+ P + TV NL L Q H ++N+ L
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEM---TVAENL-YLGQLPHK----GGIVNRRLLN 118
Query: 1325 EIVR-QDQRL-----LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
R Q + L D P+ S+GQRQ+V +A+ L + R++ DE T+S+
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
Query: 1379 TDNVIQQTIREETSRCTVIT-VAHR 1402
+ + IRE + VI V+HR
Sbjct: 175 EIEQLFRVIRELRAEGRVILYVSHR 199
|
Length = 501 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG---AAIKVHGKKAYVPQSS--WI------- 670
G + V G G GK++LL + G + SG ++ P + ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------LSGG 724
+ EN+ F+ A++ + + L+ VG G LS G
Sbjct: 86 PELSALENL--------HFW------AAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAG 131
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQ 779
Q++R+ LAR S + ++I D+P +A+D G L L L++ VL TTHQ
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI--LGE-IPRIS-GAAIKVHGKKAY 663
KK + + + A+ G GSGKS+LL SI + + P ++ +I +G Y
Sbjct: 17 KKKALN-SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 664 VPQSSWIQTGTIRENILFGKDMRQ------SFYEEVLEGCALN--QDIEMWADG-DLSVV 714
P++ + +R+ I G +Q S YE V+ G L +D ++ + + S+
Sbjct: 76 SPRTDTVD---LRKEI--GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK 130
Query: 715 G------------ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
G + + LSGGQ+QR+ +AR + ++ + + D+P SA+D + + ++
Sbjct: 131 GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EE 189
Query: 763 CLMGLLSQKTVLYTTHQLE 781
L+GL T+L T ++
Sbjct: 190 TLLGLKDDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPR----ISGAAIKVHGKKAYVPQSSWIQTGT 674
I G VAV G G GKS+LL + G E P ++G A P +
Sbjct: 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA----------PLAE------ 78
Query: 675 IRENI-LFGKDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVG--ERGIN----LSGGQ 725
RE+ L +D R +++V++ G L A L+ VG +R LSGGQ
Sbjct: 79 AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQ 138
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQL-E 781
KQR+ LARA+ + + D+P A+DA T + Q L+ L Q+ TVL TH + E
Sbjct: 139 KQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTVLLVTHDVSE 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD VL++++GKI
Sbjct: 197 AVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 4e-08
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+++ KGS A+ G GSGKS+LL + G + G + V G S + +R+
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTV-GDIVVSSTSKQKEIKPVRK 84
Query: 678 N--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG-------ERGIN 720
++F Q F E VL+ A + E A L +VG +
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ +R+ +A + +V + D+P + +D + + S +TV+ TH +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 781 -EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
+ D AD V +++ G I G D+ + V +KAH
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQE-----VDFLKAH 241
|
Length = 288 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
+KI +A G G GKS+LL I GA KV G+ Y ++ +
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA--KVEGRLLYRDRNIYDSQINSVK 98
Query: 670 --IQTG-----------TIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
Q G +I ENI F K E+ L A+ ++++
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK------ 152
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ E+G LSGGQ+QR+ +ARA+ DV + D+P SA+D + + + CL L Q
Sbjct: 153 -DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE-LKEQ 210
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 211 YTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
LKGI+ T + +G +G G+GK+T ++ L +++P+ G + + G+ + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHS-DQEIWEV------INKCHLAEIVRQDQRLLDA 1336
R+ ++ + + +L ++ I+++ L+E++ + LLD
Sbjct: 95 RIGVV----FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL-DLEELLDT 149
Query: 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RC 1394
PV S+GQR +A LL + IL LDE T +D I+ ++E
Sbjct: 150 PV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205
Query: 1395 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425
TV+ +H + + VLV+D+G++L YD
Sbjct: 206 TVLLTSHYMKDIEALARRVLVIDKGRLL-YDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDL 1281
L G++ T K + VVG +G GKSTL + L + P+GG + G D+ + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1282 RSRLSIIPQDPMLFQG------TVRTNL-DPLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1334
R ++ I+ Q+P G V L +PL ++ ++ E +
Sbjct: 91 RQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTS------LSAAERREKALA----M 137
Query: 1335 DAPVAEDGENW-------SVGQRQLVCLARVLLKKKRILVLDEATASID 1376
A V E++ S GQRQ + +AR L+ ++V DE +++D
Sbjct: 138 MAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 54/212 (25%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1280
+LKG+ T GE ++G GSGKSTL + + E + G IL G DI+ + ++
Sbjct: 15 ILKGVNLTIKKGEVHA-LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 1281 LRSRLSII--PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1338
R+RL I Q P G N D L R ++
Sbjct: 74 -RARLGIFLAFQYPPEIPGV--KNADFL-------------------------RYVN--- 102
Query: 1339 AEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD--------NVIQQTIREE 1390
E +S G+++ + ++LL + + +LDE D+ D VI + +REE
Sbjct: 103 ----EGFSGGEKKRNEILQLLLLEPDLAILDE----PDSGLDIDALRLVAEVINK-LREE 153
Query: 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
+IT R+ I D V VL +G++++
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG- 1263
+ ENL V Y L +K + P + +G +G GKST+++ R+ + P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1264 --GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN-------------LDPL 1306
G++ G ++ + ++R R+ ++ Q P F ++ N +D L
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1307 EQHSDQE--IW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
+ S ++ +W EV +K + + G + S GQ+Q +C+AR + +
Sbjct: 128 VERSLRQAALWDEVKDK-----------------LKQSGLSLSGGQQQRLCIARAIAVQP 170
Query: 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
++++DE +++D + I++ + E + T+I V H
Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ +G + G VGSG++ L++ + G R G I+++GK AY+
Sbjct: 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNGKDISPRSPLDAVKKGMAYI 343
Query: 665 PQSSWIQTG-----TIRENI----------------LFGKDMRQSFYEEVLE----GCA- 698
+S G +I +N+ LF + Q E E C
Sbjct: 344 TESRR-DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS 402
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
+NQ+I LSGG +Q++ +++ + +V IFD+P +D
Sbjct: 403 VNQNIT---------------ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 759 LFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQ 799
++K +M L+ K +L + +L E + D + V +G++ Q
Sbjct: 448 IYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 38/246 (15%)
Query: 1223 MVLKGITCTF-------------PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
+VLK IT F + ++G +G GK+T+++ + + +P+ G+I ID
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQ-----GTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
G D++ +Q + + ++ Q LF V L L + K
Sbjct: 67 GEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLG----------VPKEERK 114
Query: 1325 EIVRQDQRLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
+ V++ L+D ED + S GQ+Q V LAR L+ K ++L+ DE +++D
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1383 IQQTIREETSR--CTVITVAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+++ IRE + T + V H + +D V+V+++GK+++ SP++L +S F
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF-- 232
Query: 1440 LVAEFL 1445
+A F+
Sbjct: 233 -MASFM 237
|
Length = 351 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 50/223 (22%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-------- 1258
+E+ NL + Y L I+ P + +G +G GKSTL++ R+
Sbjct: 25 ALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1259 VEPSGGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
+E G I +DG +I + +LR R+ M+FQ R N P + I+E
Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVG------MVFQ---RPNPFP------KSIYE 124
Query: 1317 -VINKCHLAEIVRQDQRLLDAPVA-----------------EDGENWSVGQRQLVCLARV 1358
V+ L I ++R+LD V E+ S GQ+Q + +AR
Sbjct: 125 NVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182
Query: 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
+ + +L+LDE T+++D + I++ I E S+ T++ V H
Sbjct: 183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 7e-08
Identities = 45/158 (28%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGIN 720
V Q + +I ENI FGK+ + E+V C A+++ IE + + VG G +
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQKQRI +ARA+ + + D+ S++D+++ L ++ ++ + + KT++ H
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAH 1417
Query: 779 QLEFLDAADLVLVM----KDGKIEQS-GKYEDLIADQN 811
++ + +D ++V + G Q+ G +E+L++ Q+
Sbjct: 1418 RIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455
|
Length = 1466 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 45/222 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPR-----ISGAAIKVHGKK------AYVPQ 666
I KG ++ G GSGKS++ ++G E + + AI + V Q
Sbjct: 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ 90
Query: 667 SSWIQ--TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q ++ ++ FG +M E L+ ++M D
Sbjct: 91 NPDNQFVGSIVKYDVAFGLENHAVPYDEM-HRRVSEALK------QVDMLERAD-----Y 138
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
LSGGQKQR+ +A + N V I D+ S +D +Q L+ L+ +
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA-----RQNLLDLVRKVKSEHN 193
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
T++ TH L AD V+VM G + + G ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG-------THLFKQCLMGLLSQKTV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + L K+ +T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL------GRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGGQKQR+ +A AV + I D+ S +D L + + G+ Q TV+ TH
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITH 199
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L+ + +D VLVMK+G++E + +L + + ++L+
Sbjct: 200 DLDEVALSDRVLVMKNGQVESTSTPRELFS-RGNDLL 235
|
Length = 279 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 41/237 (17%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQS-SWIQTGTIRENI 679
G G+GK++ ILG + G I +G Y+P+ T+ + +
Sbjct: 35 GPNGAGKTTTFRMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI---NLSGGQKQRIQLARAVY 736
+ +++ E+ + ++ W + L +VG++ LS G +Q+IQ AV
Sbjct: 94 KYLAELKGMPKAEI------QKKLQAWLE-RLEIVGKKTKKIKELSKGNQQKIQFISAVI 146
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKD 794
++ I D+PFS +D L K + L + T+++++H++E ++ D +L++K
Sbjct: 147 HEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 795 GKIEQSGKYEDLIAD-----------------QNSELVRQMKAHRKSLDQVNPPQED 834
G+ G ED+ N + ++ + ++ E
Sbjct: 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWRIQIENET 262
|
Length = 300 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 47/214 (21%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKK----AYV 664
+ + G V + G G+GK++ ++G +PR +G I +H + Y+
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 665 PQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER-GINLS 722
PQ + I + ++ +N++ +R E E ++ E+ + + + + G +LS
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDSMGQSLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-E 781
GG+++R+++ARA+ +N + D+PF+ VD + + + S VL T H + E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L + ++ G + G +++ D++ + V
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRV 233
|
Length = 241 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-08
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTV--- 773
+LSGG+KQR+ + RA+ + ++ + D+P +++D K+ L+ L + + +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-----KRELLPYLERLAREINIP 181
Query: 774 -LYTTHQL-EFLDAADLVLVMKDGKIEQSGKYED 805
LY +H L E L AD V+V++ GK++ G E+
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 674 TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+I EN+ +G +R +S EE +E N +W + +G+ NLSGGQ+QR+
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNA--ALWDEVK-DRLGDLAFNLSGGQQQRL 170
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
+ARA+ ++ ++ +FD+P SA+D T ++ + L ++ T+L TH ++
Sbjct: 171 CIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 43/231 (18%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ----DPM 1293
IG++G G GK+T ++ L V++P G +DL ++S PQ D
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEG------------SEEDL--KVSYKPQYISPD-- 413
Query: 1294 LFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350
+ GTV L S E++ +L + LL+ PV + S G+
Sbjct: 414 -YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-------EDLLERPV----DELSGGEL 461
Query: 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1408
Q V +A L ++ + +LDE +A +D ++ + IR E + T + V H I +ID
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMID 520
Query: 1409 --NDLVLVLD--EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1455
+D ++V + GK P + E + L F RR ++ R R
Sbjct: 521 YVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTF-RRDPETGRPR 570
|
Length = 591 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKKAY-- 663
+ I K A+ G G GKS+LL I G+I +G I G
Sbjct: 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIMDSGADVVAL 85
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I EN+ +G K+ + + E+ L+G AL +++
Sbjct: 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK----- 140
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ + ++LSGGQ+QR+ +AR + N +V + D+P SA+D T + + L
Sbjct: 141 --DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLKK 197
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
+ TV+ TH + + +D M GK+ + K + + + EL
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEEL 243
|
Length = 253 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 42/180 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTGTIR 676
+I G ++ + G G+GKSSL ++ G P SG ++PQ ++ GT+R
Sbjct: 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR 81
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
E +++ W D LSGG++QR+ AR +
Sbjct: 82 EQLIYP-----------------------WDD-----------VLSGGEQQRLAFARLLL 107
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKD 794
D+ SA+D + + L LL + TV+ H+ D VL +
Sbjct: 108 HKPKFVFLDEATSALDEES-----EDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
++ +G + G G+GK++ + + + SG A +V + V Q
Sbjct: 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
Query: 667 SSWIQTG-TIRENI-LFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ T EN+ + + R+ +E+L+ + + D V
Sbjct: 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLEAADRLVK---- 130
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQKTVLYTT 777
SGG ++R+++AR++ +V D+P +D T H+++ + T+L TT
Sbjct: 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806
H +E + D V ++ G+I G E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 28/234 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+ I K A G G GKS++L L R+ G + HGK Y P ++
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVDPVEV 89
Query: 673 ---------------GTIRENILFGKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVG 715
+I +NI +G + + +E++E +L Q +W D +
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAA-LW-DEVKDKLK 146
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ G++LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L Q T++
Sbjct: 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHELKEQYTIII 205
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV 828
TH ++ +D+ E G+Y L+ +E + + + D V
Sbjct: 206 VTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259
|
Length = 264 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 36/223 (16%)
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR----- 1257
P+ K E+ L Y LK I ++ ++G +G GKST ++ R
Sbjct: 12 PTQQKSEVNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 1258 ---------VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN------ 1302
++ P IL VD ++R R+S++ Q P F ++ N
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPI-----EVRMRISMVFQKPNPFPKSIFENVAYGLR 124
Query: 1303 LDPLEQHS--DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360
+ +++ S ++ + + L + V+ RL D N S GQ+Q +C+AR L
Sbjct: 125 IRGVKRRSILEERVENALRNAALWDEVKD--RLGDLAF-----NLSGGQQQRLCIARALA 177
Query: 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
IL+ DE T+++D I++ I + ++ T++ V H +
Sbjct: 178 TDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLY 775
LSGGQ+QR+ +ARA+ + V + D+P A+D+H+G +M +L Q TV+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE-----VMAILHQLRDRGHTVII 199
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TH + A+ V+ ++DG+I + + ++ + + +
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEI---------VRNPPAQEKVNVAGGTEPV 240
|
Length = 648 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSS---LLSSILGEIP------RISGAAIKVH 658
KKP + I +GS A+ G GSGKS+ L++ +L +P +I+ I +
Sbjct: 19 KKPALNDIS-FSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLT 75
Query: 659 GKKAY--------VPQSSWIQ--TGTIRENILFGKDMRQSFYEEVLEGCA-LNQDIEMWA 707
K + V Q+ Q T+ +++ FG + R E+++ + D+ M
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM-- 133
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
L + NLSGGQKQR+ +A + + I D+ S +D + K L+
Sbjct: 134 ---LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRK 188
Query: 768 LSQK---TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L +K TV+ TH ++ + AD VLV+ DGK+ G ++ E++++
Sbjct: 189 LKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF--SKVEMLKE 239
|
Length = 282 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 61/244 (25%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAYVPQSSWI--- 670
M I + S A+ G G GKS+ L + RI A I ++ G+ Y + +
Sbjct: 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125
Query: 671 -QTG-----------TIRENILFG--------------------KDMRQSFYEEVLEGCA 698
+ G +IRENI +G KD E L A
Sbjct: 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ + + + LSGGQ+QR+ +AR + + +V + D+P SA+D T
Sbjct: 186 LWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMKDGKI---EQSGKYE 804
+ + L + TV+ TH ++ FL +LV KI +S + E
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVE 297
Query: 805 DLIA 808
D I
Sbjct: 298 DYIT 301
|
Length = 305 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKST---LIQALFRVVEPSGGRILIDGVDISMIG-- 1277
VL I PGE I + G +GSGK+T LI L V E G + + G ++
Sbjct: 20 VLFDINLEINPGEIVI-LTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEK 75
Query: 1278 -LQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH-LAEIVRQDQRL 1333
L LR + I Q L T R N+ LE + E + + E V L
Sbjct: 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL 135
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIRE 1389
P N S GQ+Q V +AR L+ + ++++ DE TA++D+ + ++Q+ RE
Sbjct: 136 DYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1390 ETSRCTVITVAH--RIPTVIDNDLVLVLDEGKVL 1421
+ CT++ V H RI V D ++ +++GK+L
Sbjct: 191 QG--CTILIVTHDNRILDVADR--IVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHG--------KKAYVPQSSWI 670
GS + G GSGKS+LL + G + +G A + +HG + A V Q S
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS-- 84
Query: 671 QTG---TIRENILFGKDMRQSFY-------EEVLEGCALNQDIEMWADGDLSVVGERGIN 720
T T+R+ + G+ +S + V++ ++ AD D+S
Sbjct: 85 DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-------T 137
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--AHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG++QR+ +ARA+ + + D+P + +D A T + L + TV+ H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALH 195
Query: 779 QLEF-LDAADLVLVMKDGKIEQSG 801
L D V+V+ G++ +G
Sbjct: 196 DLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI--IPQDPM-- 1293
+G+ G G+G+S L++A+ + +P+ GRIL++G D+ R RL + +P+D
Sbjct: 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 1294 --LFQGTVRTNLDPLEQHSDQEI-------WEVINKCHLAEIVRQ-DQRL--LDAPVAED 1341
+ ++ NL L +H + I K E++ + D R DAP
Sbjct: 347 GLVLDLSLAENL-VLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPAR-- 402
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1390
+ S G +Q + LAR L ++ +L+ + T +D I + + E
Sbjct: 403 --SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449
|
Length = 501 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1288
+ GE +GVVG +G GKST +A+ +V+ + G + G D+ + + +RS + +I
Sbjct: 45 YEGET-LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN---KCHLAEIVRQDQR-----------LL 1334
QDP+ +L+P I E+I + + ++ RQ+ + LL
Sbjct: 104 FQDPL-------ASLNP-----RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151
Query: 1335 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREE 1390
+ +S GQ Q + +AR L+ + ++++ DE +++D + N++QQ RE
Sbjct: 152 PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE- 210
Query: 1391 TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
++I +AH + V +D VLV+ G +E + ++ + ++K
Sbjct: 211 -MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIP-- 1289
PGE ++ ++G G+GK+TL+ + P G +L DG D + L + R +R I
Sbjct: 30 PGELRV-LIGPNGAGKTTLMDVITGKTRPQEGEVLFDG-DTDLTKLPEHRIARAGIGRKF 87
Query: 1290 QDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL---------DAPVA 1339
Q P +F+ TVR NL+ L + D+ ++ + AE R+ LL D A
Sbjct: 88 QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA 146
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITV 1399
S GQ+Q + + +L + ++L+LDE A + A + ++ + +++ V
Sbjct: 147 ----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV 202
Query: 1400 AHRIPTVID-NDLVLVLDEGKVL 1421
H + V + D V VL EG VL
Sbjct: 203 EHDMGFVREIADKVTVLHEGSVL 225
|
Length = 249 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSR-LSIIPQDP 1292
+ +VG +GSGKS A+ ++ P + G IL+DG + + +R R ++ I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 1293 MLFQGTVRT-------NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345
+ T L L + S Q +I + A + + +L +
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQAR-ALILEALEAVGLPDPEEVLKKYPFQ----L 126
Query: 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRI 1403
S G Q V +A LL + L+ DE T +D + + +RE ++ + H +
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 1404 PTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
V D V V+D+G+++E + +++ + ++
Sbjct: 187 GVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTG 673
+ G + G G+GK++ L + G + +G A V + A + +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 674 --------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSG 723
T REN+ + + L+G L +E AD G ++ R S
Sbjct: 86 STGLYDRLTARENLEYFAGLYG------LKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF 782
G +Q++ +ARA+ + V + D+P + +D T ++ + L + K +L++TH ++
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQLRALGKCILFSTHIMQE 198
Query: 783 LDA-ADLVLVMKDGKIEQSG 801
++ D V+V+ G++ G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE---- 677
+ S++AV G G+GKS+L G + SG+ + + G+ I IRE
Sbjct: 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL-IRGEP--------ITKENIREVRKF 79
Query: 678 -NILFGKDMRQSFYEEVLEG-----CALNQDIEMWADGDLSVVGERGI---------NLS 722
++F Q F V + L D E A S + G+ +LS
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQ 779
GG+K+R+ +A + V + D+P + +D L + L + TV+++THQ
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPETYGMTVIFSTHQ 197
Query: 780 LEFL-DAADLVLVMKDGKIEQSGKYEDL 806
L+ + + AD + VM G+I G E++
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 41/257 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ N+ + T VL I+ P + + ++G +GSGK+TL++ + + + G I
Sbjct: 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TV---------------RTNLDPLEQHSD 1311
G D+S + +D ++ + Q LF+ TV R N ++
Sbjct: 61 FHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118
Query: 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
Q + E++ HLA+ R +L S GQ+Q V LAR L + +IL+LDE
Sbjct: 119 Q-LLEMVQLAHLAD--RYPAQL------------SGGQKQRVALARALAVEPQILLLDEP 163
Query: 1372 TASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428
++D +++ +R+ E + T + V H ++ D V+V+ +G + + +P Q
Sbjct: 164 FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223
Query: 1429 LLEDNSSSFSKLVAEFL 1445
+ + ++ F V EF+
Sbjct: 224 VWREPATRF---VLEFM 237
|
Length = 353 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 44/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSL---LSSIL------GEIPRISGAAIKVHGKK------- 661
+K+ G V++CG G+GKS+L LS + GEI G ++ +
Sbjct: 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDTERAGI 84
Query: 662 -------AYVPQSSWIQTGTIRENILFGKDMRQSF---YEEVLEGCALNQDIEMWADGDL 711
A V + S + ENI G ++ Y+ + ++ A L
Sbjct: 85 AIIHQELALVKELS------VLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQLKL 133
Query: 712 SV-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ NL GQ+Q +++A+A+ + + I D+P +++ L ++ L
Sbjct: 134 DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD--IIRDLKA 191
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
+ +Y +H+L + A +D + V++DG+
Sbjct: 192 HGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-07
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--------ISGAAIK------------- 656
+++ G V +CG G+GKS+L+ + G P SG+ +K
Sbjct: 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81
Query: 657 -VHGKKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGD 710
+H + VP+ S + ENI G ++ R ++ L L +++++ AD
Sbjct: 82 IIHQELTLVPELS------VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
VG+ G GGQ+Q +++A+A+ + + I D+P S++ L ++ L
Sbjct: 136 TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDLKA 189
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
V +Y +H+L + A D + V++DG+
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-07
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVPQSSWI-QTG 673
A G G+GK++ LS + G +P SG + V GK PQ + +
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVL-VGGKDIETNLDAVRQSLGMCPQHNILFHHL 1018
Query: 674 TIRENILFGKDMRQSFYEEV-LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
T+ E+ILF ++ +EE LE A+ +D + + E +LSGG ++++ +A
Sbjct: 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSVA 1073
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLV 791
A ++ V + D+P S VD ++ ++ L+ S +T++ +TH ++ D D + +
Sbjct: 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 792 MKDGKIEQSGKYEDLIADQNS-------ELVRQMK---AHRKSLDQVNPPQEDKCLSRVP 841
+ G++ SG L +N LVR+MK + R + +R P
Sbjct: 1133 ISQGRLYCSGTPLFL---KNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCP 1189
Query: 842 CQMSQITEER 851
++ +IT E+
Sbjct: 1190 ARVDEITPEQ 1199
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 35/262 (13%)
Query: 593 IEAGEYAWDAREENFKKPTIKLTDK-------MKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+EAG+ A D N + + + DK +KI S + G GSGKS+LL +L
Sbjct: 1 MEAGKSAEDVF--NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLN 57
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ-------SFYEEVL---- 694
+ I + IKV GK Y + + Q I+ G +Q S Y+ +
Sbjct: 58 RLIEIYDSKIKVDGKVLYFGKDIF-QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116
Query: 695 -EGCALNQDIEMWADGDLSVVG----------ERGINLSGGQKQRIQLARAVYSNSDVYI 743
G ++I+ + L VG LSGGQ+QR+ +ARA+ V +
Sbjct: 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL 176
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGK 802
D+P S +D + ++ + L ++ ++ +H + AD V + +G++ + G
Sbjct: 177 MDEPTSMIDI-VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
Query: 803 YEDLIADQNSELVRQMKAHRKS 824
++ +EL + R S
Sbjct: 236 SNEIFTSPKNELTEKYVIGRIS 257
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 45/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-P-----RISGAAI-KVHGKK-AYVPQS-- 667
+ I G V + G G+GKS+LL I E P R++G + + G+ Y+ +
Sbjct: 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81
Query: 668 ------SWIQTGTIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ + EN+ F +++R+ LE L+
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-PAALELVGLSHKHRALPAE---- 136
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQC-LMGLLS 769
LSGG++QR+ +ARA+ ++ + I D+P +D T +L K+ G
Sbjct: 137 -------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-- 187
Query: 770 QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797
TV+ TH E +D V+ ++ GK+
Sbjct: 188 --TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 78/345 (22%), Positives = 133/345 (38%), Gaps = 68/345 (19%)
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVI--TFGVCILLKTPLTSGAVLSALATFRI 541
+E ++ + A + W++ L+ +I F + + L T+ A L
Sbjct: 219 QEYRHHIIRANTFHLLA---VNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVL-VLLF 274
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDV-AIDIEAGEYAW 600
L+ P+ + ++ + +V+ +I + E K D +++ +A+
Sbjct: 275 LRTPLLSAVGILPTLLTAQVAFNKIAKL--ELAPYKADFPRPQAFPDWKTLELRNVRFAY 332
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
++ F I LT I +G V + G GSGKS+L + G
Sbjct: 333 --QDNAFHVGPINLT----IKRGELVFLIGGNGSGKSTLAMLLTG--------------- 371
Query: 661 KAYVPQSSWIQTGTIRENILFGK--------DMRQSF---YEEV--------LEGCALNQ 701
Y PQS G I + GK D R+ F + + EG A Q
Sbjct: 372 -LYQPQS-----GEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQ 422
Query: 702 DIEMWAD-----GDLSVVGERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
IE W S+ R N LS GQK+R+ L A+ D+ + D+ + D
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482
Query: 755 TGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDAADLVLVMKDGKI 797
F Q L+ LL + KT+ +H + AD +L M++G++
Sbjct: 483 F-RREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 38/209 (18%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----------AYVPQSS- 668
G +AV GS G+GK++L++++ P+ SG+ + ++G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGS-VLLNGMPIDAKEMRAISAYVQQDDL 109
Query: 669 WIQTGTIRENILF----------GKDMRQSFYEEVLEGCALN--QDIEMWADGDLSVVGE 716
+I T T+RE+++F K ++ +EVL+ L + + G +
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG--- 166
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLY 775
LSGG+++R+ A + ++ + D+P S +D+ + Q L GL KT++
Sbjct: 167 ----LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV-QVLKGLAQKGKTIIC 221
Query: 776 TTHQ--LEFLDAADLVLVMKDGKIEQSGK 802
T HQ E + D +++M +G++ G
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 35/199 (17%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------VEPSGGRILIDGVDI--S 1274
L + P + +G +G GKST ++ L R+ V G+I +DG DI
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT---GKITLDGEDIYDP 91
Query: 1275 MIGLQDLRSRLSIIPQDPMLFQGTVRTN------LDPLEQHSDQEIWEVINKCHLAEIVR 1328
+ + +LR+R+ ++ Q P F ++ N + L + +K L EIV
Sbjct: 92 RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR----------SKAELDEIVE 141
Query: 1329 QDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
R L + + E G S GQ+Q +C+AR + ++++DE +++D
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAK 201
Query: 1383 IQQTIREETSRCTVITVAH 1401
+++ I E T++ V H
Sbjct: 202 VEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 6e-07
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 31/203 (15%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-----------LRSRLS 1286
+G+ G G+G++ L +ALF S G IL+DG + + +D R
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347
Query: 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL-------DAPVA 1339
++ + N+ L +I++ + + R L + P+
Sbjct: 348 LVLDMS------IAENIT-LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG 400
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1398
S G +Q V LAR L ++L+LDE T ID I + IRE + ++
Sbjct: 401 ----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM 456
Query: 1399 VAHRIPTVIDN-DLVLVLDEGKV 1420
++ +P ++ D +LV+ EG++
Sbjct: 457 ISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 56/231 (24%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKVHGKKAYV------ 664
I +G V V GS G+GKS+LL++I G++ SG V + +
Sbjct: 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88
Query: 665 PQSSWIQTGTIRENILF----GKDM---------RQSFYEEVLEGCALNQDIEMWADGDL 711
P + TI EN+ GK R+S + E L L G
Sbjct: 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL---------GLE 139
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + +R LSGGQ+Q + L A + + D+ +A+D T + + L+ K
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME------LTAK 193
Query: 772 -------TVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
T L TH +E LD + ++++ GKI D+ ++ + L
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL-----DVTGEEKASL 239
|
Length = 263 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-07
Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 38/296 (12%)
Query: 498 CSAIAFLFWASPTLVS-VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
S + + A+P S ITFG L++ G V S+L+ F I N I
Sbjct: 302 LSVVLPILIAAPRYFSGQITFGG--LMQAVGAFGQVHSSLSWF------IDNYDA----I 349
Query: 557 AQTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
A + +L R+ EF + + + +P + D A + +++
Sbjct: 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGI------TLENLSLRTP 403
Query: 616 DKMKIMK--------GSKVAVCGSVGSGKSSLLSSILGEIPRISGA-AIKVHGKKAYVPQ 666
D ++ G ++ + G G+GK+SLL ++ G P SG ++ ++PQ
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463
Query: 667 SSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
++ GT+RE + + D + VL L E L LSG
Sbjct: 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAE-----RLDEEDRWDRVLSG 518
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
G++QR+ AR + D+ SA+D T L+ Q L L TV+ H+
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 23/224 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++ +L Y P L+ I T GE + V+G +G GK+TL+ + V G I
Sbjct: 2 LQISHLYADY-GGKP-ALEDINLTLESGELLV-VLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
+DG + G + R + + +L V+ N+ Q + + K EI
Sbjct: 59 TLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNVAFGLQLAG------VEKMQRLEI 108
Query: 1327 VRQDQRLLDAPVAEDGENW--SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1384
Q + + AE W S GQRQ V +AR L ++L+LDE ++D T +Q
Sbjct: 109 AHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 1385 Q---TIREETSRCTVITVAHRIPTVI--DNDLVLVL-DEGKVLE 1422
+ +ET + V+ + H I + +LVL+ G+V+E
Sbjct: 169 TLLLKLWQETGK-QVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGG QR+ +A A+ I D+P + +D + K L L +L TH
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL-LRELRQLFGTGILLITH 184
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L + AD V VM DG+I + G +++ + E R++ +
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 6e-07
Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 45/175 (25%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
G + + G GSGK++L ++ E+ G I + G I + + +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG--------EDILEEVLDQLLLI 52
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
VG + + SG + R+ LA A DV
Sbjct: 53 I-------------------------------VGGKKASGSGELRLRLALALARKLKPDV 81
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQK------TVLYTTHQLEFLDAADLVL 790
I D+ S +DA L + LL TV+ TT+ + L A L
Sbjct: 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG-------------VDISMIGLQ 1279
GEK + ++G +GSGKST+++ L + G+I ++G V L+
Sbjct: 25 AGEK-VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83
Query: 1280 DLRSRLSIIPQDPMLF----------QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1329
+R+++ ++ Q LF + V + + + E+++ LA+
Sbjct: 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-ELLDMVGLAD---- 138
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
+ P G GQ+Q V +AR L + ++++ DE T+++D + IR
Sbjct: 139 --KADHMPAQLSG-----GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191
Query: 1390 ETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431
S T++ V H + + D V D+G+++E P ++
Sbjct: 192 LASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 44/167 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I + A+ G G GKS+ L ++ L +I G + + G+ Y Q
Sbjct: 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVNQL 82
Query: 672 ---TG-----------TIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
G +I +N+ +G KD ++ E+ L+G AL W +
Sbjct: 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL------WDE- 135
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D
Sbjct: 136 ----VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TI ++I+FG EE + A + IE+ D S + LSGGQK+R+ LA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA--KYIEL-VGLDESYLQRSPFELSGGQKRRVALAG 178
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE-FLDAADLVLV 791
+ D +FD+P + +D G + L Q KT++ TH L+ L+ +
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 792 MKDGKIEQSGKYEDLIADQN 811
KDGKI + G D+++D
Sbjct: 238 FKDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-07
Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 51/257 (19%)
Query: 1224 VLKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG--GRILIDGVDISMIGLQD 1280
+L G+T PGE + V+G +GSGKSTL+ AL ++ + G IL + + Q
Sbjct: 83 ILNGVTGMASPGEI-LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QI 138
Query: 1281 LRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHL----AEIVRQDQ-RLL 1334
L+ R + QD +L+ TVR E + C L + +Q++ +
Sbjct: 139 LK-RTGFVTQDDILYPHLTVR---------------ETLVFCSLLRLPKSLTKQEKILVA 182
Query: 1335 DAPVAEDG----ENW----------SVGQRQLVCLARVLLKKKRILVLDEATASID-TAT 1379
++ ++E G EN S G+R+ V +A +L +L+LDE T+ +D TA
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
Query: 1380 DNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLE-----D 1432
++ T++T H+ + + D VLVL EG+ L + +
Sbjct: 243 YRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVG 302
Query: 1433 NSSSFSKLVAEFLRRTS 1449
S SF A+FL +
Sbjct: 303 FSPSFPMNPADFLLDLA 319
|
Length = 659 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAY 663
K +K D + + A+ G G GKS+ L ++ I G I + G+ Y
Sbjct: 17 KFEALKGID-LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 664 VPQSSWIQTG---------------TIRENILFG------KDMR--QSFYEEVLEGCALN 700
P +Q +I EN+++G KD E L+ A+
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+++ + E ++LSGGQ+QR+ +AR + DV + D+P SA+D + T +
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI- 187
Query: 761 KQCLMGLLSQKTVLYTTHQL 780
+ L+ L Q T++ TH +
Sbjct: 188 ENMLLELRDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-07
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQ------ 666
I KG + + G G+GK++LL + G P RI+G + + +P
Sbjct: 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN-RLRGRQLPLLRRRIG 82
Query: 667 -----SSWIQTGTIRENILF-----GKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVV 714
+ T+ EN+ GK R Q L L + + +
Sbjct: 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE------ 136
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQ-CLMGLLSQ 770
LSGG++QR+ +ARA+ ++ + + D+P +D L K+ G
Sbjct: 137 -----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT--- 188
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
TV+ TH L +D A V+++ DG+
Sbjct: 189 -TVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 53/233 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---------------- 663
+ G A+ G G+GKS+L+ +L I + I ++ Y
Sbjct: 28 VYPGEIHALLGENGAGKSTLMK-VLSGIHEPTKGTITINNI-NYNKLDHKLAAQLGIGII 85
Query: 664 VPQSSWIQTGTIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMWAD 708
+ S I T+ EN+ G ++MR +L L D++
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-AAMMLLRVGLKVDLD---- 140
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
E+ NLS KQ +++A+ + ++ V I D+P S++ +LF +M L
Sbjct: 141 -------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMNQL 191
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ ++Y +H+L E D VMKDG SG D+ N ++VR M
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV---SNDDIVRLM 241
|
Length = 510 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 9e-07
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 25/207 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------------- 664
I KG V++ G GSGKS+ I G G +K+ G+
Sbjct: 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK-VKIDGELLTAENVWNLRRKIGMVFQ 88
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
P + ++ T+ +++ FG + + EE+++ D + A L LSG
Sbjct: 89 NPDNQFV-GATVEDDVAFGMENQGIPREEMIK----RVDEALLAVNMLDFKTREPARLSG 143
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLE 781
GQKQR+ +A + ++ I D+ S +D TG + + + + TVL TH L+
Sbjct: 144 GQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEIMRVIHEIKEKYQLTVLSITHDLD 202
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
++D +LVMK G+I + +L A
Sbjct: 203 EAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-07
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVE-PSGGRILIDG--VDISMIGLQDLRSRLSIIPQD--- 1291
+G+ G G+G++ L+Q LF G I IDG V I Q + ++++P+D
Sbjct: 291 LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP-QQAIAQGIAMVPEDRKR 349
Query: 1292 ----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCH-LAEIVRQDQRL------LDAPVAE 1340
P++ G T L L++ + I+ L I+ QRL + +A
Sbjct: 350 DGIVPVMGVGKNIT-LAALDRFTG---GSRIDDAAELKTILESIQRLKVKTASPELAIA- 404
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREETSRCTV 1396
S G +Q LA+ LL +IL+LDE T ID +I Q +++ + +
Sbjct: 405 ---RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA---I 458
Query: 1397 ITVAHRIPTVID-NDLVLVLDEGKV 1420
I ++ +P V+ +D VLV+ EGK+
Sbjct: 459 IVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-06
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 43/219 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW 669
G VA+ G G+GKS+LL ++ GE+ SG ++++G+ +A +PQ S
Sbjct: 28 GEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPAELARRRAVLPQHSS 86
Query: 670 IQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQ 727
+ T+ E + G R E AL A DL+ + R LSGG++Q
Sbjct: 87 LSFPFTVEEVVAMG---RAPHGLSRAEDDALVA--AALAQVDLAHLAGRDYPQLSGGEQQ 141
Query: 728 RIQLARA-----VYSNSDVYIF-DDPFSAVD-AHTGTHLFKQCLMGLLSQKT------VL 774
R+QLAR ++ D+P SA+D AH + ++ L Q V+
Sbjct: 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVI 195
Query: 775 YTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQN 811
H L L A AD ++++ G++ G +++ +
Sbjct: 196 VVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLTPET 233
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 55/268 (20%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE +N+ + PT VL I + + ++G +GSGKSTL++ + ++ E + G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNLDP----LE--------------Q 1308
+DG+ + D + +I Q+ M+FQ + L P LE +
Sbjct: 60 VDGLKV-----NDPKVDERLIRQEAGMVFQ---QFYLFPHLTALENVMFGPLRVRGASKE 111
Query: 1309 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
++++ E++ K LAE R P G GQ+Q V +AR L K ++++
Sbjct: 112 EAEKQARELLAKVGLAE------RAHHYPSELSG-----GQQQRVAIARALAVKPKLMLF 160
Query: 1369 DEATASIDTATDN---VIQQTIREETSRCTVIT----VAHRIPTVIDNDLVLVLDEGKVL 1421
DE T+++D + + Q + EE ++T A ++ + + + +D+G++
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL-----IFIDKGRIA 215
Query: 1422 EYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
E P+ L+ N S+ + EFL+ S
Sbjct: 216 EDGDPQVLI-KNPP--SQRLQEFLQHVS 240
|
Length = 240 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKA--------YVPQSSWIQT 672
G +AV G GSGKS+LL+++ G I +G + + K +V Q +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 673 G-TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---RG 718
T+RE ++F K + E V+ L + +++G RG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRG 206
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
I SGG+++R+ +A + N + I D+P S +DA T + L L + KT++ +
Sbjct: 207 I--SGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSM 263
Query: 778 HQ--LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
HQ D VLV+ +G+ GK D +A
Sbjct: 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 59/217 (27%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+LK I+ +F PG KIGV+G G+GKSTL+ RI+ GVD G
Sbjct: 22 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL------------RIMA-GVDKEFEG----E 63
Query: 1283 SRLS------IIPQDPMLFQG-TVRTN-----------LDPLEQHSDQ------------ 1312
+R + +PQ+P L TVR N LD +
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALA 123
Query: 1313 ----EIWEVINKCHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKR 1364
E+ E+I+ ++ Q + +DA P S G+R+ V L R+LL+K
Sbjct: 124 AEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
+L+LDE T +D + ++Q + + TV+ V H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDYPG--TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR---VVE--PS 1262
IE ENL + Y T L I ++G +G GKST ++ L R +VE
Sbjct: 8 IETENLNLFY--TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65
Query: 1263 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1320
G ++ +G +I + + +LR ++ ++ Q P F ++ N+ +I +K
Sbjct: 66 EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS-----YGPKIHGTKDK 120
Query: 1321 CHLAEIVRQDQRL------LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374
L EIV Q + + + + + S GQ+Q +C+AR L + ++++DE T++
Sbjct: 121 KKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180
Query: 1375 IDTATDNVIQQTIREETSRCTVITVAHRI 1403
+D + I++ I T+I V H +
Sbjct: 181 LDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+G +A+ G+ G+GKS+LL + G + R A+ + G+ + ++ R
Sbjct: 13 FAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQSGAVLIDGEPLDYSRKGLLERRQ-RV 70
Query: 678 NILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGIN------LSG 723
++F Q F +V + A LN ++E L+ VG G+ LSG
Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSG 130
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE 781
G+K+R+ +A AV DV + D+P + +D G L L ++ TV+ +TH ++
Sbjct: 131 GEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 34/221 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS----SWIQTGTI 675
I G +A+ G GSGKS SILG +P S AA G + + S Q +
Sbjct: 33 IEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAASERQLRGV 90
Query: 676 REN---ILFGKDMR-----QSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI------ 719
R N ++F + M + +++ E L++ + L ++ GI
Sbjct: 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-- 771
LSGGQ+QR+ +A A+ + D+ I D+P +A+D + L+ L +
Sbjct: 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELG 208
Query: 772 -TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L+ TH L + AD V VM+ G+I ++G E L A
Sbjct: 209 MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249
|
Length = 534 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 66/230 (28%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKK--------AYVP 665
+ + +GS V + G G+GK++LL +I G + +G A V A VP
Sbjct: 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM-----------WADGDLSVV 714
Q + ++ F D+RQ +EM W + D + V
Sbjct: 84 QDT---------SLSFEFDVRQV--------------VEMGRTPHRSRFDTWTETDRAAV 120
Query: 715 GERGIN--------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
ER + LSGG++QR+ LARA+ + V + D+P +++D +
Sbjct: 121 -ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDLI 807
+ + KT + H L+ AA D ++++ DG++ +G D++
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQ----------- 671
A+ G G GKS+LL ++ +SGA A+ + + Y P +
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 672 ----TGTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+I +N+ FG M QS +EV+E +L Q +W D + + G+ LSG
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQ-AALW-DEVKDNLHKSGLALSG 150
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-- 781
GQ+QR+ +AR + +V + D+P SA+D T ++ + L T+ TH ++
Sbjct: 151 GQQQRLCIARVLAIEPEVILMDEPCSALDP-VSTMRIEELMQELKQNYTIAIVTHNMQQA 209
Query: 782 --------FLDAADLVLVMKDGKI 797
FL DLV + G+I
Sbjct: 210 ARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 36/208 (17%)
Query: 627 AVCGSVGSGKSSLL---SSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTG--------- 673
A+ G G GKS+ L + + +I I IK G+ Y + ++
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQ 93
Query: 674 ------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
++ +N+ +G K++ EE L+ A+ ++ + D +
Sbjct: 94 PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA------ 147
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
SGGQ+QRI +ARA+ V + D+P SA+D + + + ++ LM L Q T + TH
Sbjct: 148 -FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHN 205
Query: 780 LEFLD-AADLVLVMKDGKIEQSGKYEDL 806
L+ +D + +G + ++G E++
Sbjct: 206 LQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 42/221 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWIQ 671
+ I GS A G GSGKS+++ + G +P R+ I K + Q
Sbjct: 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ----- 82
Query: 672 TGTIRENI--LFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG------ 715
IR+ + +F Q F E VL+ A ++ E A L++VG
Sbjct: 83 ---IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 716 ERG-INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQK 771
E+ LSGGQ +R+ +A + + + D+P + +D L FK+ L Q
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK-----LHQS 194
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T++ TH + + + AD V V++ GK+ SGK +D+ D
Sbjct: 195 GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 72/265 (27%), Positives = 108/265 (40%), Gaps = 64/265 (24%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
L +L + N TLP +GIT F GR+G+GK++LI A+ + P GRI+++
Sbjct: 10 LGDLCLTVNLTLPA--QGITAIF---------GRSGAGKTSLINAISGLTRPQKGRIVLN 58
Query: 1270 G---VDISM-IGLQDLRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
G D I L + R+ + QD LF VR NL S
Sbjct: 59 GRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVA--------QFD 110
Query: 1325 EIVR--QDQRLLDA-PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
+IV + LLD P + G G++Q V + R LL +L++DE AS+D
Sbjct: 111 KIVALLGIEPLLDRYPGSLSG-----GEKQRVAIGRALLTAPELLLMDEPLASLDLPRK- 164
Query: 1382 VIQQTIRE---------ETSRCTVITVAHRIPTVI---DNDLVLVLDEGKVLEYDS---- 1425
RE ++ V+H + ++ D V+VL++GKV +
Sbjct: 165 ------RELLPYLERLAREINIPILYVSHSLDEILRLADR--VVVLEQGKVKAFGPLEEV 216
Query: 1426 -------PRQLLEDNSSSFSKLVAE 1443
P E+ SS V E
Sbjct: 217 WASSAMRPWLPKEEQSSILKVTVLE 241
|
Length = 352 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 58/189 (30%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+ I +VG GSGK+TL +AL R + P GG ++ + + + D + + +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62
Query: 1296 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355
RL L
Sbjct: 63 GE-------------------------------LRLRLA--------------------L 71
Query: 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIR-------EETSRCTVITVAHRIPTVID 1408
A K +L+LDE T+ +D + ++ + TVI + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
Query: 1409 NDLVLVLDE 1417
L D
Sbjct: 132 ALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 38/218 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+KI+K S A+ G G GKS+ L ++ L E +I G I GK Y
Sbjct: 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEGKNIYSNNFDILEL 86
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q+ +I +NI +G KD ++ E+ L+ AL +++
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK----- 141
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ ++LSGGQ+QR+ +AR + +V + D+P SA+D T ++ ++ L
Sbjct: 142 --DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINLKE 198
Query: 770 QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806
T++ TH ++ +D +G IE+ ++L
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 31/181 (17%)
Query: 1241 VGRTGSGKSTLIQALFRV--VEPSG---GRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+G +G GKST+++ L R+ V P G +L+DG D+ G+ + R +I M+F
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTI----GMVF 91
Query: 1296 QGTVRTNLDPLEQHSDQ-----EIWEVINKCHLAEIVRQDQR----------LLDAPVAE 1340
Q R N P D ++ V NK L E+V + R LD P
Sbjct: 92 Q---RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400
G S GQ+Q +C+AR + + +L++DE +++D + I+ I E T++ V
Sbjct: 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT 204
Query: 1401 H 1401
H
Sbjct: 205 H 205
|
Length = 258 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP---RISG-----------AAIKVHGKKAYVPQSS 668
G V V G GSG S+LL ++ + G A K G+ YV +
Sbjct: 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEED 92
Query: 669 W-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T T+RE + F + G+ V RGI SGG+++
Sbjct: 93 VHFPTLTVRETLDFALRCK----------------------GNEFV---RGI--SGGERK 125
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQ--LEFL 783
R+ +A A+ S + V +D+ +D+ T +C+ M + + T + +Q E
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLDSST-ALEILKCIRTMADVLKTTTFVSLYQASDEIY 184
Query: 784 DAADLVLVMKDGKI 797
D D VLV+ +G+
Sbjct: 185 DLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ----DPM 1293
IG+VG G GK+T + L V++P G + + + IS PQ D
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISY------------KPQYIKPD-- 412
Query: 1294 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQ 1351
+ GTV L + ++ EI++ Q +RLLD V + S G+ Q
Sbjct: 413 -YDGTVEDLLRSITDDLGSSYYKS-------EIIKPLQLERLLDKNVKD----LSGGELQ 460
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1408
V +A L + + +LDE +A +D + + IR E T + V H I +ID
Sbjct: 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMID 518
|
Length = 590 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS---SWIQTGTIRENI--LF 681
A+ G G GKS+ + ++ I + +K+ G+ Y + + +R+NI +F
Sbjct: 42 AIIGPSGCGKSTFIKTLNLMIQMVPN--VKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99
Query: 682 --GKDMRQSFYEEVLEGCALN----------------QDIEMWADGDLSVVGERGINLSG 723
G QS ++ V G ++ +D+ +W D + + ++LSG
Sbjct: 100 QKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW-DEVKDRLHTQALSLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
GQ+QR+ +ARA+ +N DV + D+P SA+D T ++ ++ L + T++ TH ++
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
M I + A+ G G GKS+ + L I + G +KV G + Q+ +
Sbjct: 28 MDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP-VKVEGVVDFFGQNIYDPRININR 85
Query: 670 --IQTG-----------TIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMW 706
Q G +I EN+ +G +R S E L+G AL Q+++
Sbjct: 86 LRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVK-- 141
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+ + + LSGGQ+QR+ +ARA+ V + D+P SA+D T ++ +
Sbjct: 142 -----DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHS 195
Query: 767 LLSQKTVLYTTHQLE 781
L S+ T+ TH ++
Sbjct: 196 LRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I+L + Y L IT P + + ++G +G+GKS+L++ L + P G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1268 IDG--VDISMI----GLQDLRSRLSIIPQDPMLF-QGTVRTNL--DPL------EQHSDQ 1312
I G D S ++DLR + ++ Q L+ TV+ NL P + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDA-PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
+++ + L D P+ G GQ+Q V +AR L+ + ++L+ DE
Sbjct: 121 RAEKLLKRLRLKP-------YADRYPLHLSG-----GQQQRVAIARALMMEPQVLLFDEP 168
Query: 1372 TASIDTATDNVIQQTIRE--ETSRCTVIT-----VAHRIPTVIDNDLVLVLDEGKVLE 1422
TA++D I I+E ET VI VA + + V+ ++ G ++E
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTAS-----RVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 20/238 (8%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
S ++ E L + Y V + +T P ++G G GKSTL++ L R++ P+
Sbjct: 4 SVARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDP-----MLFQGTV---RTNLDPLEQHSDQEIW 1315
G + +DG I +++ R+ ++ Q+ + Q V R PL +E
Sbjct: 62 GHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE 121
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
E + K A + L D V + S GQRQ +A VL ++ I++LDE T +
Sbjct: 122 EAVTKAMQATGITH---LADQSV----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
Query: 1376 DTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLV-LDEGKVLEYDSPRQLL 1430
D + + + + E T+ V H + L+ L EGK++ +P++++
Sbjct: 175 DISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------ 661
P +K D +K+ S A+ G G+GKS+LL + G + SG+ I GK+
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSS 67
Query: 662 --------AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
+ V Q + + ++ +N+ G+ + + V + ++ + D+
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--VDQDKMYRDTKAIFDELDID 125
Query: 713 V-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + LS Q Q I++A+A N+ + I D+P S++ HLF ++ L ++
Sbjct: 126 IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKER 183
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++Y +H++ E D + +++DG+ + L D+
Sbjct: 184 GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDK 225
|
Length = 491 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIGLQDLRSRLSIIP 1289
GE + ++G +G GKSTL+ + + G + ++ + M L + ++ I+
Sbjct: 27 KGEI-VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPAAQRQIGILF 83
Query: 1290 QDPMLF-QGTVRTNL------DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
QD +LF +V NL + + L QD L
Sbjct: 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATL-------- 135
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
S GQR V L R LL + + L+LDE + +D A + +Q + E A
Sbjct: 136 ---SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR-------AAG 185
Query: 1403 IPTV-IDNDLVLVLDEGKVLE 1422
IPTV + +DL V +V+E
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIE 206
|
Length = 213 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI---LIDGVDISMIGLQD------LR 1282
+PGE +G+VG +GSGKSTL+ L + P G + G ++ + L + +R
Sbjct: 27 YPGEV-LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMR 85
Query: 1283 SRLSIIPQDP-------MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
+ + Q+P + + L + I L E+ R+ D
Sbjct: 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW-LEEVEIDPTRIDD 144
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREET 1391
P A +S G +Q + +AR L+ + R++ +DE T +D + ++++ +R+
Sbjct: 145 LPRA-----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-- 197
Query: 1392 SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
VI V H + + +LV+ +G+V+E Q+L+D +++L+
Sbjct: 198 LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+I +N+L G + + G A + ++ +W D + + LSGGQ+Q + L
Sbjct: 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-DAVKDRLSDSPFRLSGGQQQLLCL 174
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-EFLDAADLVL 790
AR + N +V + D+P SA+D T T ++ + L + TV+ TH L + +D
Sbjct: 175 ARTLAVNPEVLLLDEPTSALDP-TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233
Query: 791 VMKDGKIEQSGKYEDLIAD-QNSELVR 816
+ DG++ + G E L + +++E R
Sbjct: 234 LFFDGRLVEEGPTEQLFSSPKHAETAR 260
|
Length = 276 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 43/216 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQ 666
I KG ++ G G+GKS+LLS + + + SG I + G + + + Q
Sbjct: 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSILKQ 82
Query: 667 SSWIQTG-TIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN- 720
+ I + T+R+ + FG+ R + + + +N+ IE L + +R ++
Sbjct: 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI----INEAIEYL---HLEDLSDRYLDE 135
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQ------KT 772
LSGGQ+QR +A + ++D + D+P + +D K +M +L + KT
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD-------MKHSVQIMKILRRLADELGKT 188
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807
++ H + F +D ++ +K+GK+ + G +++I
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKK---- 661
M+I + S VA G G GKS+ L + + GEI RI G I G +
Sbjct: 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIYDKGVQVDEL 82
Query: 662 ----AYVPQSSWIQTGTIRENILFG------KD---MRQSFYEEVLEGCALNQDIEMWAD 708
V Q +I EN+ +G KD +RQ EE L+G AL +++
Sbjct: 83 RKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV-EETLKGAALWDEVK---- 137
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ E LSGGQ+QR+ +ARA+ + V + D+P SA+D T ++ + L
Sbjct: 138 ---DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP-ISTAKVEELIHELK 193
Query: 769 SQKTVLYTTHQLE 781
T++ TH ++
Sbjct: 194 KDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 49/222 (22%)
Query: 1241 VGRTGSGKSTLIQALFR------VVEPSGGRILIDGVDISMIGLQDLR----SRLSIIPQ 1290
VG +GSGKS ++ R VV PSG I G + Q LR +++++I Q
Sbjct: 41 VGESGSGKSVTALSILRLLPSPPVVYPSG-DIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99
Query: 1291 DPMLFQGTVRTNLDPLEQHS-DQEIWEVIN-------KCHLAEIV--------RQ-DQRL 1333
+PM+ +L+PL H+ +++++EV++ + EI+ RQ +RL
Sbjct: 100 EPMV-------SLNPL--HTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRL 150
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ET 1391
D P S G+RQ V +A LL + +L+ DE T ++D + I Q +RE +
Sbjct: 151 TDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205
Query: 1392 SRCTVITVAHRIPTV---IDNDLVLVLDEGKVLEYDSPRQLL 1430
++ + H + V D V V+ G+ +E + L
Sbjct: 206 LNMGLLFITHNLSIVRKLADR--VAVMQNGRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 46/187 (24%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY----VPQSSWIQTG---- 673
A+ G G GKS+LL + L E +I+G + + G+ Y V I+ G
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK-LTMDGEDIYGNIDVADLR-IKVGMVFQ 90
Query: 674 -------TIRENILFG------KDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVGER- 717
+I EN+ +G KD + E L G AL W + V +R
Sbjct: 91 KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL------WDE-----VKDRL 139
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
LSGGQ+QR+ +AR + DV + D+P SA+D TH ++ + L T++
Sbjct: 140 KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEELKKNYTIV 198
Query: 775 YTTHQLE 781
TH ++
Sbjct: 199 IVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 1231 TFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288
+F +K +G +G G+GKST ++ + + P G + + G D+ + ++++ + +
Sbjct: 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQRNIGYL 80
Query: 1289 PQ-DPMLFQGTVRTNLDPL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340
P+ +P+ VR L + Q Q + E+I L + + +
Sbjct: 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL---RPEQHKKIGQ---- 133
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400
S G RQ V LA+ L+ ++L+LDE T +D I+ I+ T+I
Sbjct: 134 ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189
Query: 1401 HRIPTV--IDNDLVLVLDEGKVL 1421
H + V I + V+++++GK++
Sbjct: 190 HIMQEVEAICDR-VIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 40/203 (19%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---- 663
KK IK D M+ K A+ G GSGKS+ L S+ I A +V G+ Y
Sbjct: 32 KKEAIKGID-MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA--RVTGQILYRGID 88
Query: 664 -----------------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCA 698
V Q +I ENI F KD + E L+ A
Sbjct: 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA 148
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ DL + + LSGGQ+QR+ +ARA+ D+ + D+P SA+D T
Sbjct: 149 LWDQVK----DDL---HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTM 200
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE 781
++ + L T++ TH ++
Sbjct: 201 QLEETMFELKKNYTIIIVTHNMQ 223
|
Length = 267 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------A 662
+ +G VA+ G GSGKS+LL+ +L + S +++ G+
Sbjct: 33 VKRGETVAIVGPSGSGKSTLLA-VLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG 91
Query: 663 YVPQS-SWIQTGTIRENI-----LFGKDMRQSFY--EEVLEGCALNQDIEMWADGDLSVV 714
+V QS I T EN+ L G+ S + +LE L + + +
Sbjct: 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA------ 145
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LSGG++QR+ LARA DV D+P +D TG + L+ L+++
Sbjct: 146 -----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD--LLFALNRERGT 198
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T++ TH + D L ++ G++
Sbjct: 199 TLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
L+ + T PG +VG GSGKSTL +AL V + G+I I G Q L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1285 L-SIIPQD-------PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV-----RQDQ 1331
L + +PQ P+L + V + W K +IV R D
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVV------MMGRYGHMGWLRRAKKRDRQIVTAALARVD- 131
Query: 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-E 1390
+++ + GE S GQ++ V LAR + ++ ++++LDE +D T+ I +RE
Sbjct: 132 -MVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1421
T++ H + +V + V+ +G VL
Sbjct: 190 DEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 40/207 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--- 676
I +G +A+ GS GSGKS+LL +LG + + + +G+ + + S +R
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAKAELRNQK 88
Query: 677 -----------------ENI----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
EN+ L GK LE A A G
Sbjct: 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA--------AVGLEHRAN 140
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---T 772
R LSGG++QR+ +ARA+ +N + + D+P +DA +F+ L+G L++
Sbjct: 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQGTA 198
Query: 773 VLYTTHQLEFLDAADLVLVMKDGKIEQ 799
L TH L+ L M+DG++
Sbjct: 199 FLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 1228 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDLRSR 1284
I+ T P K ++G +G GK+TL++ + + P G IL DG +I S L +R R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1285 LSIIPQDPMLFQ-GTVRTNLD-------PLEQHSD--QEIWEVINKCHLAEI-VRQDQRL 1333
+S MLFQ G + T+++ PL +H+ + L + +R +L
Sbjct: 86 MS------MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL 139
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
+ + + S G + LAR + + +++ DE D T V+ + I E S
Sbjct: 140 MPSEL-------SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA 192
Query: 1394 --CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433
T + V+H +P V+ D ++ + K++ + S + L +
Sbjct: 193 LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 47/261 (18%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
SS + ++N+ ++ LK I+ + + + ++G +G GK+TL++ + + +
Sbjct: 1 SSPYLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA 58
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQD-PMLFQG-------TVRTNLD-PLEQHSDQEI 1314
G I G DI+ RL +D ++FQ TV N+ L+
Sbjct: 59 GTIYQGGRDIT---------RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---- 105
Query: 1315 WEVINKCHLAEIVRQDQRLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
+ + +AE V + L+ P +E S GQ+Q V LAR L +L+LDE
Sbjct: 106 ---MGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162
Query: 1373 ASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDN-------DLVLVLDEGKVLEY 1423
+++D ++ IR+ R T I V H D D ++V++ G + +
Sbjct: 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTH------DQEEALSMADRIVVMNHGVIEQV 216
Query: 1424 DSPRQLLEDNSSSFSKLVAEF 1444
+P+++ ++ F VA+F
Sbjct: 217 GTPQEIYRHPATPF---VADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-06
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKA--------------- 662
+G A+ G GSGKS+L+ +I + +G I + K
Sbjct: 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91
Query: 663 YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
P+S + RE I+FG ++F + E + M V+ + +S
Sbjct: 92 QFPESQLFEDTVERE-IIFGP---KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYT 776
GGQ ++I + + N D+ + D+P + +D + K+ +M LL KT++
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS-----KRQVMRLLKSLQTDENKTIILV 202
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+H + E AD V+VMK+G I ++L D+
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-06
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 50/202 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWI-QTGTIRENIL 680
G+K+ V G G+GKS+LL + G +G A G K Y+PQ + T T+REN+
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE 90
Query: 681 FG----KDMRQSFYE-----------------------EVLEGCA---LNQDIEMWAD-- 708
G KD F E E+++ L++ +E+ D
Sbjct: 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150
Query: 709 ----GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQ 762
D V LSGG+++R+ L R + S D+ + D+P + +DA + L Q
Sbjct: 151 RCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
Query: 763 CLMGLLSQKTVLYTTHQLEFLD 784
G TV+ TH FLD
Sbjct: 206 EYPG-----TVVAVTHDRYFLD 222
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
++ +GS VA+ G GSGKS+L+ + SG I + G P++ +R+
Sbjct: 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHI-TPETGNKNLKKLRKK 86
Query: 679 I--LFGKDMRQSFYEEVLEGC-------------ALNQDIEMWADGDLS--VVGERGINL 721
+ +F Q F VL+ A + ++ LS ++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ +R+ +A + ++ D+P + +D + + + TV+ TH +
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ + AD VLV++ GK+ + +++ +D+
Sbjct: 207 DVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 42/205 (20%)
Query: 1221 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI--DGVDISMIGL 1278
LP VL+ ++ + + + + G +GSGKSTL+++L+ P G+IL+ +G + ++
Sbjct: 24 LP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 1279 Q-----DLRSR--------LSIIPQ--------DPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
+ ++R L +IP+ +P+L +G R + + ++
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREV-------ARAKAADL 135
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ + +L E RL A +S G++Q V +AR + IL+LDE TAS+D
Sbjct: 136 LTRLNLPE------RLWSLAPA----TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
Query: 1378 ATDNVIQQTIREETSR-CTVITVAH 1401
V+ + IRE +R ++ + H
Sbjct: 186 TNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ + + D+P SA+D T++ + + L T++ TH
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQELKKNFTIIVVTHS 207
Query: 780 L-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + +D V + G+I + +++ + S ++
Sbjct: 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKR 246
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 46/242 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI--------------------KV 657
+ K V G+ GSGKS+++ G I +G I K
Sbjct: 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKE 91
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
G P+ Q TI ++I FG + +Q Y++V E L Q E +
Sbjct: 92 IGLVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK----- 145
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
LSGGQK+R+ LA + + + + D+P +D G F L + K
Sbjct: 146 --RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP-KGEEDFINLFERLNKEYKK 202
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
++ TH + + L AD V+VM +GK+ G ++ ++Q EL+ ++ +++P
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ--ELLTKI--------EIDP 252
Query: 831 PQ 832
P+
Sbjct: 253 PK 254
|
Length = 289 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-- 1281
VLKGI+ + + +VG +GSGKSTL+ L + +P+ G + G D++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1282 --RSRLSIIPQDPMLFQGTVRTNLDP-LEQHSDQEIWEVI----NKCHLAEIVRQDQRL- 1333
R I FQ R +L L + E+ V K L QRL
Sbjct: 83 LRREHFGFI------FQ---RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLG 133
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
L+ V S GQ+Q V +AR L+ ++++ DE T ++D+ + + + + R
Sbjct: 134 LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193
Query: 1394 C-TVITVAH 1401
TVI V H
Sbjct: 194 GHTVIIVTH 202
|
Length = 648 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 45/210 (21%)
Query: 623 GSKVAVCGSVGSGKSSLLSSI-LGEIPR-----ISGAAI---KVHGKKA---------YV 664
G + + G G+GKSSLL + L E+PR I+G K KA V
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 665 PQSS--WIQTGTIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
Q W T++EN++ KD + E++L+ L + +
Sbjct: 88 FQQYNLWPHL-TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP------- 139
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--T 772
++LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T
Sbjct: 140 ----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIKELAETGIT 193
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801
+ TH++E A V+ M++G I + G
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+GG ++R+++ARA+ + + D+P +D + + + L++ +VL+ T
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH--VRALARDQGLSVLWAT 190
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H ++ ++A D ++V+ G++ G +L +
Sbjct: 191 HLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEA 230
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI- 1266
IELENL Y L +LK I+ T +IG+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1267 LIDGVDIS 1274
V I
Sbjct: 59 WGSTVKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+ I + A+ G G GKS+ L + L +I G + + GK Y
Sbjct: 25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE-VLLDGKNIYDKDVDVVEL 83
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I +N+ +G KD ++ E L+ AL +++
Sbjct: 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK----D 139
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
DL + + LSGGQ+QR+ +AR + DV + D+P SA+D T + ++ L
Sbjct: 140 DLK---KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKK 195
Query: 770 QKTVLYTTHQLE 781
+ T++ TH ++
Sbjct: 196 EYTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 52/229 (22%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA------------------- 662
G A+ G G+GKS+LL IL + +I + G++
Sbjct: 29 AGQVHALMGENGAGKSTLLK-ILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87
Query: 663 --YVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLS 712
VP+ T+ EN+ G+ + R YE + L DI D D
Sbjct: 88 LHLVPEM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----DPDTP 137
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LS GQ+Q +++A+A+ N+ V FD+P S++ A LF+ ++ L
Sbjct: 138 LK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEG 190
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +LY +H++E + A D + V KDG+ + ++D+ +LV+ M
Sbjct: 191 RVILYVSHRMEEIFALCDAITVFKDGRYVAT--FDDMAQVDRDQLVQAM 237
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALF--RVVEPSGGRILIDGVDISMIGLQD 1280
+LKG+ T GE ++G GSGKSTL + + E + G IL G D+ + +
Sbjct: 15 ILKGVNLTVKKGEIHA-IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 1281 LRSRLSII--PQDPMLFQGTVRTNLD----PLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1334
R+R + Q P G +NL+ L E ++ ++++ LL
Sbjct: 74 -RARAGLFLAFQYPEEIPGV--SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL 130
Query: 1335 DAP--VAEDGEN--WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD--------NV 1382
N +S G+++ + ++ L + ++ +LDE ID+ D
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE----IDSGLDIDALKIVAEG 186
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
I + +RE +IT R+ I D V VL +G++++
Sbjct: 187 INR-LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIP-- 1289
PGE ++ ++G G+GK+T++ + P G +L G D++ GL + + +R I
Sbjct: 27 PGELRV-IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT--GLPEHQIARAGIGRKF 83
Query: 1290 QDPMLFQG-TVRTNLDPLEQHSDQEIWEVI-NKCHLAEIVRQDQRL----LDAPVAEDGE 1343
Q P +F+ TV NL+ L D+ ++ + + E R ++ L L
Sbjct: 84 QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG 142
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT---IREETSRCTVITVA 1400
S GQ+Q + + +L++ ++L+LDE A + TD ++T ++ + +V+ V
Sbjct: 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSLAGKHSVVVVE 199
Query: 1401 HRIPTV--IDNDLVLVLDEGKVL 1421
H + V I D V VL +G VL
Sbjct: 200 HDMEFVRSIA-DKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF---Q 1296
+ G G+GK++L++ L + P G +L G I R R +L+ Q
Sbjct: 32 IEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR-------RQRDE--YHQDLLYLGHQ 82
Query: 1297 GTVRTNLDPLE----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346
++T L LE D+ +WE + + LA D PV S
Sbjct: 83 PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-------GFEDVPVR----QLS 131
Query: 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRIP 1404
GQ++ V LAR+ L + + +LDE +ID ++ + + + ++T +P
Sbjct: 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191
Query: 1405 TVIDNDLVLVLDEG 1418
+ +D V L G
Sbjct: 192 --VASDKVRKLRLG 203
|
Length = 204 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
G++LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ ++ L T+ T
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDYTIALVT 205
Query: 778 HQLE 781
H ++
Sbjct: 206 HNMQ 209
|
Length = 261 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAY------------ 663
+ G + G G+GK++L + I G + SG+ + + G +
Sbjct: 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQ 82
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
+P+ T+ EN++ R + ++ A+ L VG
Sbjct: 83 IPRL--FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP 140
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPF---SAVDAHTGTHLFKQCLMGLLSQK--T 772
LS GQ++R+++ARA+ ++ + + D+P + + L ++ L ++ T
Sbjct: 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE-----LRERGIT 195
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
VL H ++ + AD V V+ G++ G +++ +
Sbjct: 196 VLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL---SSILGEIPRISGAAIKVHGKK------------- 661
M+I + A+ G+ G GKS+ L + + +I +I G +++ GK
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRKNV 81
Query: 662 AYVPQSSWIQTGTIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
V Q + +I ENI + KD ++ + L+ L ++++
Sbjct: 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------D 134
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
+ + + LSGGQ+QR+ +ARA+ + + D+P SA+D + + ++ L L +
Sbjct: 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 773 VLYTTHQLE 781
++ TH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVV---EPSGGRILIDGVDISMIG--LQDLR---------- 1282
+ ++G +GSGKSTL++ L ++ + +G I + G + G +D+R
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92
Query: 1283 ------SRLSIIPQDPMLFQGTV---RTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1333
+RLS++ + G+ RT + Q + + + + Q
Sbjct: 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ET 1391
L S GQ+Q V +AR L+++ ++++ DE AS+D + ++ T+R+ +
Sbjct: 153 L-----------SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN 201
Query: 1392 SRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDN 1433
TV+ H++ + + ++ L +G V YD Q ++
Sbjct: 202 DGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDNE 243
|
Length = 262 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
++NL+ + P+ + + TF + +G G+GK+T + L ++ P+ G +L+
Sbjct: 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990
Query: 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1328
G DI L +R L + PQ +LF TV ++ Q + WE + L
Sbjct: 991 GKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WE---EAQLEMEAM 1045
Query: 1329 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
+ L E+ ++ S G ++ + +A + +++VLDE T+ +D + I +
Sbjct: 1046 LEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105
Query: 1389 EETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSP 1426
+ S T+I H + + D + ++ +G++ +P
Sbjct: 1106 KYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-05
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 43/233 (18%)
Query: 1225 LKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL-FRVVEPSG----GRILIDGVDISMIGL 1278
LK ++ PGE + V+G +G+GK+TL+ AL FR P G G +L++G+ I
Sbjct: 41 LKNVSGVAKPGEL-LAVMGSSGAGKTTLMNALAFR--SPKGVKGSGSVLLNGM---PIDA 94
Query: 1279 QDLRSRLSIIPQDPML-----------FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
+++R+ + + QD + FQ +R ++ + + EV+
Sbjct: 95 KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVL--------- 145
Query: 1328 RQDQRLLDAP-----VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
Q L V + S G+R+ + A LL +L DE T+ +D+
Sbjct: 146 -QALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 1383 IQQTIRE-ETSRCTVITVAHRIPT--VIDN-DLVLVLDEGKVLEYDSPRQLLE 1431
+ Q ++ T+I H+ P+ + + D ++++ EG+V SP Q +
Sbjct: 205 VVQVLKGLAQKGKTIICTIHQ-PSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 48/212 (22%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
+ I+ +FPG K + ++G G+GKSTL++ LF + + G IL G
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 1272 DISMIGLQD-LRSRLSIIPQD-PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1329
+I ++ L + +S++ Q+ ++ Q +V N+ L ++ + ++ +K +
Sbjct: 61 EIDFKSSKEALENGISMVHQELNLVLQRSVMDNM-WLGRYPTKGMFVDQDKMYRDTKAIF 119
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
D+ +D SV Q Q++ +A+ +I+++DE T+S+ N + IR+
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 1390 ETSR-CTVITVAHRIPTVID-NDLVLVLDEGK 1419
R C ++ ++H++ + D + +L +G+
Sbjct: 180 LKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1280
VL ++ + + + +VG +GSGKSTL+ L + P+ G ++ +G +S + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1281 LRSR-LSIIPQ-DPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
LR++ L I Q +L T N+ PL +I K AEI + +L A
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPL----------LIGKKKPAEINSRALEMLAAV 133
Query: 1338 VAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1389
E N S G+RQ V +AR L+ R+++ DE T ++D + I Q + E
Sbjct: 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190
|
Length = 233 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ----------- 666
+ + +G A+ G G GK++LL I G+I G I G+ +P
Sbjct: 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGEN--IPAMSRSRLYTVRK 84
Query: 667 --SSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
S Q+G + +N+ + +L + + L VG RG
Sbjct: 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK---------LEAVGLRG 135
Query: 719 I------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
LSGG +R LARA+ D+ +FD+PF D T L K L+ L+
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSAL 193
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T + +H + E L AD ++ D KI G + L A+ + VRQ
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR-VRQ 241
|
Length = 269 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLSIIPQDPMLFQ 1296
+ +VG G+GKSTL+ + + G I G + +L R R + Q F
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86
Query: 1297 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356
V L L Q D+ E++N +A + D +L + G W Q V LA
Sbjct: 87 MPVWHYL-TLHQP-DKTRTELLN--DVAGALALDDKLGRSTNQLSGGEW-----QRVRLA 137
Query: 1357 RVLLK-------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVI 1407
V+L+ ++L+LDE S+D A + + + + ++ +H + T+
Sbjct: 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLR 197
Query: 1408 DNDLVLVLDEGKVLEYDSPRQLL 1430
+L GK+L ++L
Sbjct: 198 HAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ---------- 671
A+ G G GKS+ L + L R+ G I + G+ Y P ++
Sbjct: 36 ALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDVVELRRRVGMVFQ 94
Query: 672 -----TGTIRENILFG---KDMRQSFY-----EEVLEGCALNQDIEMWADGDLSVVGERG 718
+I EN+ +G ++ Y E L AL +++ + E
Sbjct: 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESA 147
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+ LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L ++ T++ TH
Sbjct: 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARYTIIIVTH 206
Query: 779 QLE 781
++
Sbjct: 207 NMQ 209
|
Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKKAYVPQSSWIQ-- 671
+ I K S A+ G G GKS+ + ++ I G I + G Y P ++
Sbjct: 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83
Query: 672 -------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
+I +N+ +G +D + EE L+ AL +++ D
Sbjct: 84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-- 141
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ + LSGGQ+QR+ +AR + + +V + D+P SA+D + T + + + L
Sbjct: 142 -----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKED 195
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 196 YTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 34/159 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAYVPQSSWIQT--- 672
I +G A+ G G GKS++L S+ I G ++K G Y P+ ++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 673 ------------GTIRENILFGK-------DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+I ENI FG DM + E L A+ W D
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDE-LVERSLRKAAV------W-DECKDK 147
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+ E G +LSGGQ+QR+ +AR + +V + D+P SA+D
Sbjct: 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 37/220 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G A+ G G GKS+LL + SG + + K A +PQ
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSSRQLARRLALLPQHH 85
Query: 669 WIQTG-TIRENILFGKDMRQSFY------EEVLEGCALNQ-DIEMWADGDLSVVGERGIN 720
G T+RE + +G+ S + + A+ Q I AD L+ +
Sbjct: 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-------D 138
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQ+QR LA + ++ V + D+P + +D + L + LM L+ KTV+ H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--LMRELNTQGKTVVTVLH 196
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L + D ++V+ +G + G E+++ L+R
Sbjct: 197 DLNQASRYCDHLVVLANGHVMAQGTPEEVMTP---GLLRT 233
|
Length = 255 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I KG V + G G+GKS+LL I GE R + I V+G + + + +R
Sbjct: 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHD--LSRLKGREIPFLRRQ 80
Query: 679 I--LFGKD----MRQSFYEEV--------LEGCALNQDIEMWADGDLSVVGERG------ 718
I +F +D ++ YE V + + + L +VG +
Sbjct: 81 IGVVF-QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE----VLDLVGLKHKARALP 135
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + V + D+P +D +M L + TV
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-----IMRLFEEINRLGTTV 190
Query: 774 LYTTHQLEFLDAADL-VLVMKDGKI 797
L TH LE ++ VL ++DG++
Sbjct: 191 LMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299
+ G G GKS+L + L + GGR+ + +L +PQ P + GT+
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTL 531
Query: 1300 RTNL---DPLEQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
R + D E SD+++ ++++ L I+ ++ A V + + S G++Q
Sbjct: 532 RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW-SA-VQDWMDVLSGGEKQ 589
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
+ +AR+ K + +LDE T+++ + + + RE T+ +V+HR
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K S A+ G G GKS+ + + L + RI G + + G+ Y P ++
Sbjct: 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPDVDVVE- 90
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALN----QDIEMWADGDL------SVVGER- 717
+R+N+ +F K S Y+ V G ++ +D++ + L +R
Sbjct: 91 --LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRL 148
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
++LSGGQ+QR+ +AR + + +FD+P SA+D T + +M L T++
Sbjct: 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLKKDYTIV 207
Query: 775 YTTHQLE 781
TH ++
Sbjct: 208 IVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTGT 674
M+I + A+ G G GKS+ L L + + ++V G+ + Q+ + +
Sbjct: 28 MEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE-VRVEGRVEFFNQNIYERRVNLNR 85
Query: 675 IRENI--LFGKD--MRQSFYEEVLEGCALN----------------QDIEMWADGDLSVV 714
+R + + K S Y+ V G + +D ++W D +
Sbjct: 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW-DEIKHKI 144
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +ARA+ V + D+P +D L + + L S+
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS--LRLRSEL 202
Query: 772 TVLYTTHQL 780
T++ +H L
Sbjct: 203 TMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
AY P+++ I I E I+ E+ L+ AL +++ DL G L
Sbjct: 184 AYGPRNNGINDRKILEKIV----------EKSLKSAALWDEVK----DDLDKAGNA---L 226
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ+QR+ +ARA+ +V + D+P SA+D T ++ ++ L + +++ TH +
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDP-IATAKIEELILELKKKYSIIIVTHSMA 285
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
+ +D + G IE++G+
Sbjct: 286 QAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 58/236 (24%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---------R 1282
+PGE +G+VG +GSGK+TL+ AL + P G + D + L L R
Sbjct: 30 YPGEV-LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 1283 SRLSIIPQDPM----------------LFQ------GTVR-TNLDPLEQHSDQEIWEVIN 1319
+ + Q P L G +R T D LE+
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLER----------- 137
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379
EI R+ D P +S G +Q + +AR L+ R++ +DE T +D +
Sbjct: 138 ----VEI--DAARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 1380 DNVIQQTIREETSR--CTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1432
+ +R V+ V H + + +LV+ +G+V+E Q+L+D
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242
|
Length = 258 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP---------- 665
+ I KG A+ G+ G GKS+LL + G E P + I + G ++VP
Sbjct: 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 666 QS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
QS + T+ +NI FG K + V E L + M +
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL---VHM-----QEFAKRKPHQ 149
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTH 778
LSGGQ+QR+ LAR++ + + D+P A+D + + + L + V+ T
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
Q E + A + +M GK Q G+ E++ +
Sbjct: 210 QEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-05
Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 529 SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASD 588
S VL+ L ++ P+ L + ++AQ +++ R+ +F + N+ +P E S A +
Sbjct: 271 SAFVLALL----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE-LSDADN 325
Query: 589 VAIDIEAGEYAWDA---REENFKKPTIKLTD-------KMKIMKGSKVAVCGSVGSGKSS 638
V + A + + D+ ++ + + ++ ++I +G V + G G GKS+
Sbjct: 326 VLL--LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383
Query: 639 LLSSILG-EIPR-----ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-- 690
L G IP+ + GAA+ + Y S I + L G D +
Sbjct: 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443
Query: 691 --EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
++ L+ + +++ DG S LS GQ++R+ L A + + +FD+
Sbjct: 444 NAQQYLQRLEIADKVKI-EDGGFSTT----TALSTGQQKRLALICAWLEDRPILLFDEWA 498
Query: 749 SAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAADLVLVMKDGKI 797
+ D +++ L L Q KT++ +H ++ + AD ++ + G I
Sbjct: 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T + TH
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIRELAETGITQVIVTH 199
Query: 779 QLEFL-DAADLVLVMKDGKIEQSG 801
++E A V+ M++G I + G
Sbjct: 200 EVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG A+ G G+GKS+L ++ G + SG I GK + ++ +RE
Sbjct: 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMK---LRE 82
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALN-----QDIEMWADGDLSVVGERGIN------ 720
++ +F Q F Y++V G A+N ++ D L G +
Sbjct: 83 SVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LS GQK+R+ +A + V + D+P + +D G + L+ + + T++ TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMKLLVEMQKELGLTIIIATH 200
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
++ + D V VMK+G++ G +++ A++ E++R
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EMLR 237
|
Length = 283 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISG---AAIKVHGKKAY----- 663
+ I +G V + G G GKS+L +LG E P G + ++A+
Sbjct: 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91
Query: 664 -VPQ---SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL--SVVGER 717
V Q S+ T+R+ I G+ +R + E + E+ L +
Sbjct: 92 LVFQDSPSAVNPRMTVRQII--GEPLRH--LTSLDESEQKARIAELLDMVGLRSEDADKL 147
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQ QRI +ARA+ + + D+ S +D + + L+ L Q L
Sbjct: 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE--LLRKLQQAFGTAYL 205
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDL 806
+ TH L + + V VM G+I E+ + L
Sbjct: 206 FITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-05
Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I + + + P LK + T +PGE ++G G+GKSTL++ L + EP+ G I
Sbjct: 6 ISMAGIGKSFGPV--HALKSVNLTVYPGEIHA-LLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1267 LIDGVDISMIGLQD-LRSRLSIIPQD-PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
I+ ++ + + + + + II Q+ ++ + TV NL + +H +++ V N
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGV-NIIDWR 120
Query: 1325 EIVRQDQRLLD-----APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
E+ + +L + E N S+ +Q++ +A+ L+ +++++DE T+S+
Sbjct: 121 EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+ GQKQR+ LARA+ V I D+ +++D + L LM L +K + +Y T
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L + +D VLVM G++ + G D++A EL +++ A
Sbjct: 208 QHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIA 251
|
Length = 267 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTT 777
LSGG +QR+ +A A+ V I D+P +A+D + + L+ +L ++ V++ T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H + + + AD VLVM G+ ++G E +
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 46/232 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + +G A+ G GSGKS+L +I+G ++ I G+ I +
Sbjct: 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED--------ILELSPD 76
Query: 677 ENILFG----------------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
E G D ++ + + ++G
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 716 -ERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
ER +N SGG+K+R ++ + + + I D+P S +D + + + L +
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 773 -VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
VL TH LD D V V+ DG+I +SG + EL +++
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG---------DPELAEELEEK 238
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-04
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 70/232 (30%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITE-----PTSKASDVAIDIEAGEYAWDAR----EENF 607
A++K L R +E + ++ QK+ T P + D I+ E + + + +F
Sbjct: 284 AKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSF 343
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---KKAYV 664
K P G V V G G+GKS+L I G+ SG IK+ G K AYV
Sbjct: 344 KLP-----------PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-IKI-GETVKLAYV 390
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN---- 720
QS R+ + D ++ +EE+ G D+ +G+R +
Sbjct: 391 DQS--------RDAL----DPNKTVWEEISGG------------LDIIQLGKREVPSRAY 426
Query: 721 -----------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGG++ R+ LA+ + S +V + D+P + +D T
Sbjct: 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 48/212 (22%)
Query: 1241 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP------ML 1294
VG +G GKSTL++ + + + + G + I R++ +P P M+
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGE------------KRMNDVP--PAERGVGMV 80
Query: 1295 FQG-------TVRTNLD---PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344
FQ +V N+ L +EI + +N +AE+++ L P A G
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN--QVAEVLQLAHLLDRKPKALSG-- 136
Query: 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR------CTVIT 1398
GQRQ V + R L+ + + +LDE +++D A ++ +R E SR T+I
Sbjct: 137 ---GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEISRLHKRLGRTMIY 189
Query: 1399 VAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
V H ++ + D ++VLD G+V + P +L
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 49/188 (26%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWI--QTG---- 673
V + G G+GK+SLL + G +G + G+ Y ++ Q G
Sbjct: 30 VQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88
Query: 674 -TIRENILFGKDMRQSFYEEVLEGCALNQDI---EMWADGDLSVVGERGI------NLSG 723
T EN+ FY L+ +W L+ VG G LS
Sbjct: 89 LTALENL--------RFY------QRLHGPGDDEALWEA--LAQVGLAGFEDVPVRQLSA 132
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR + + ++I D+PF+A+D G L LL+Q V+ TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GV----ARLEALLAQHAEQGGMVILTTH 187
Query: 779 QLEFLDAA 786
Q + +
Sbjct: 188 QDLPVASD 195
|
Length = 204 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT----GTHLFKQCLMGLLSQKTVLYTT 777
SGG + RI LARA++ D+ + D+P + +D H T+L K KT + +
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-------PKTFIVVS 398
Query: 778 HQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKS 824
H EFL+ D++ + + G Y+ + +L Q KA +
Sbjct: 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESN 447
|
Length = 718 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 42/194 (21%)
Query: 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ 671
+ L K G VAV G G+GK++LL ILG A K G++ Y P S ++
Sbjct: 402 LNLEIKP----GDVVAVVGQSGAGKTTLLRMILG--------AQKGRGEEKYRPDSGKVE 449
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GD----LSVVGERGIN----- 720
+ L + F E + +E GD + ++ G++
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTI--------LEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LS GQK+R +LA+ + +V + D+ + +D T + ++ + L+++
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGI 559
Query: 772 TVLYTTHQLEFLDA 785
T++ TH+ E +A
Sbjct: 560 TLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 21/210 (10%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLSIIPQD 1291
GE + +VG G+GKSTL+ + ++ P G I G + +L R R + Q
Sbjct: 21 AGEI-LHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78
Query: 1292 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQ 1349
F V L L Q V L E+ L V S G+
Sbjct: 79 TPPFAMPVFQYLT-LHQPDKTRTEAV--ASALNEVAEALGLDDKLGRSV----NQLSGGE 131
Query: 1350 RQLVCLARVLLK-------KKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAH 1401
Q V LA V+L+ ++L+LDE S+D A + + + E + V+ +H
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191
Query: 1402 RIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1430
+ + + D V +L +GK+L ++L
Sbjct: 192 DLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQTGTI 675
I G V + G GSGKS+L+ + G + SG + + KK ++ I
Sbjct: 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK--------VKLSDI 81
Query: 676 REN--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG--------ER 717
R+ ++F Q F E + + A ++IE +++VG +
Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQK+R+ +A V + I D+P + +D + + + L ++ T++
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK--IKELHKEYNMTII 199
Query: 775 YTTHQLEFLDAA---DLVLVMKDGKIEQSGKYED------------LIADQNSELVRQMK 819
+H +E D A D ++VM GK E G + L Q + LVR+++
Sbjct: 200 LVSHSME--DVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQVTYLVRKLR 257
|
Length = 287 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSL---LSSILGEIPRISGAA 654
Y +++ EE+ +K + + +++ KG + + G GSGKS++ ++++L IP S
Sbjct: 12 YKYESNEESTEKLALDDVN-LEVKKGEFLVILGRNGSGKSTIAKHMNALL--IP--SEGK 66
Query: 655 IKVHGKKAYVPQSSWIQTGTIREN--ILFGKDMRQSFYEEVLEGCALN--------QDIE 704
+ V G ++ W IR ++F Q V E A ++I
Sbjct: 67 VYVDGLDTSDEENLW----DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 705 MWADGDLSVVGERGIN------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
D L VG LSGGQKQR+ +A + + IFD+P + +D +G
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGRR 181
Query: 759 LFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+ L + T++ TH +E AD ++VM GK+ G
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M + S A+ G G GKS++L SI L R++G I + Y +
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK-ILLDDTDIY---DRGVDP 80
Query: 673 GTIRENI--LFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSV------------VG 715
+IR + +F K S Y+ V+ G LN + ++ D V V
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR-SEADEIVESSLKRVALWDEVK 139
Query: 716 ER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+R + LSGGQ+QR+ +AR + +V + D+P SA+D T ++ + L +
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP-ISTLKIEELIEELKEKY 198
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 199 TIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQD 1291
GE +G+ G G+G++ L + L+ + GGRI+++G +I+ + L L +P+D
Sbjct: 288 AGEI-LGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346
Query: 1292 PM---LF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL-------DAPVAE 1340
L+ + N+ L H+ + W I ++ + +R L +
Sbjct: 347 RQSSGLYLDAPLAWNVCAL-THNRRGFW--IKPARENAVLERYRRALNIKFNHAEQAA-- 401
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
S G +Q V +A+ L ++L++DE T +D + N I Q IR
Sbjct: 402 --RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG +Q+ LA+ + +N V I D+P VD ++K L+ L+Q+ ++ ++
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK--LINQLAQEGVAIIVVSS 461
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
E L +D VLV+ +GK++
Sbjct: 462 ELAEVLGLSDRVLVIGEGKLKGD 484
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIREN 678
I + + + G G GK++ + + G + G +Y PQ GT+R+
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD- 80
Query: 679 ILFGKDMR---QSFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+L +++ E+ + + Q ++ LSGG+ QR+ +A
Sbjct: 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAAC 129
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--------LLSQKTVLYTTHQLEFLD-A 785
+ ++D+Y+ D+P + +D +Q LM ++KT H + +D
Sbjct: 130 LSKDADIYLLDEPSAYLDV-------EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182
Query: 786 ADLVLVMKDGK 796
AD ++V +G+
Sbjct: 183 ADRLIVF-EGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 42/210 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-------------RISGAAIKVHGKK-- 661
+ + G VA+ G G GKS+L ++G E P +++ A K +
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ 92
Query: 662 --------AYVPQSS--WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A P+ + I +R + K R + E+L L D
Sbjct: 93 MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL----------DD 142
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
SV+ +R LSGGQ QR+ LARA+ + I D+ S +D + + L+ L Q+
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR--LLKKLQQQ 200
Query: 772 T---VLYTTHQLEFLDA-ADLVLVMKDGKI 797
L+ TH L ++ V+VM +G+I
Sbjct: 201 FGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRE 677
+I G + + G G GK++ + + G I G+ + K +Y PQ S GT+ +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVED 420
Query: 678 ---NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+ + F E+++ L +E D LSGG+ QR+ +A A
Sbjct: 421 LLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVD-----------ELSGGELQRVAIAAA 469
Query: 735 VYSNSDVYIFDDPFSAVD 752
+ +D+Y+ D+P + +D
Sbjct: 470 LSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 672 TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----GI 719
T +IR+N++ G K E+ L G L W + V +R G
Sbjct: 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL------WNE-----VKDRLDKPGG 147
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ DV + D+P SA+D T + + L T++ TH
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-ISTLAIEDLINELKQDYTIVIVTHN 206
Query: 780 LE 781
++
Sbjct: 207 MQ 208
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 32/215 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-------------HGKKAYVPQSSW 669
G + + G GSGKS+LL + G + G A + ++ + ++ W
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCA---------LNQDIEMW---ADGDLSVVGER 717
G + +N G MR S + E + + W + D + + +
Sbjct: 89 ---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL 145
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVII 204
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809
TH L A +LVM+ G++ +SG + ++ D
Sbjct: 205 VTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 41/224 (18%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
LKGI FPG K + +VG G+GKST+++ L + G IL G
Sbjct: 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66
Query: 1272 DISMIGLQDLR-SRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1329
+++ G + + + + II Q+ L Q T+ N+ +E + ++ +
Sbjct: 67 EVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENI-----FLGREFVNRFGRIDWKKMYAE 121
Query: 1330 DQRLL---------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT-ASIDTAT 1379
+LL D V E S+G++Q+V +A+VL + +++++DE T A DT T
Sbjct: 122 ADKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
Query: 1380 D---NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1419
+ VI++ ++ + ++ ++HR+ + + D V V +G+
Sbjct: 178 ESLFRVIRE-LKSQ--GRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 62/261 (23%), Positives = 118/261 (45%), Gaps = 47/261 (18%)
Query: 571 KEDNQKKPITEPTSKASD-VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK------- 622
E +T+ + +D ++ E+GE + R ++ IK +K I+
Sbjct: 730 GEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVK-IK-KEKRVILNNVDGWVK 787
Query: 623 -GSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK---------AYVPQSSW- 669
G+ A+ G+ G+GK++LL+ + + I+G V+G+ YV Q
Sbjct: 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLH 847
Query: 670 IQTGTIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ T T+RE++ F +RQ + EEV++ + E +AD +VVG G
Sbjct: 848 LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM----ESYAD---AVVGVPGE 900
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIF-DDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYT 776
L+ Q++R+ + + + + +F D+P S +D+ T + LM L+ + +L T
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC--KLMRKLADHGQAILCT 958
Query: 777 THQ--LEFLDAADLVLVMKDG 795
HQ + D +L+++ G
Sbjct: 959 IHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MG 766
DG V + I+LSGG+ QR+ +A A+ N+ Y+FD+P + +D + + +
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
Query: 767 LLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803
+KT L H L LD +D + V + + G Y
Sbjct: 119 EEGKKTALVVEHDLAVLDYLSDRIHVFEG----EPGVY 152
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 32/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP-------------QSSW 669
G + + G GSGK++LL I G + +G ++ W
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGC------------ALNQDIEMWADGDLSVVGER 717
G + +N G M+ S + E A QD + DL + +
Sbjct: 92 ---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDL 148
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVI 207
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSG 801
TH L AD ++VMK G++ +SG
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)
Query: 599 AWDAREENFKKPTIKLTDKM--KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
AWD N P IK D + + +G + + G VG+G++ L+ + G P I
Sbjct: 267 AWDP--VN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF 321
Query: 657 VHGKK--------------AYVP----QSSWIQTGTIRENIL---FGKDMRQSFYEEVLE 695
+ GK A VP + + + +NI + S ++ E
Sbjct: 322 IDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE 381
Query: 696 GCALNQDIEMW----ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751
+ + I+ A +L++ LSGG +Q+ LA+ + N + I D+P +
Sbjct: 382 LKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
Query: 752 DAHTGTHLFKQCLMGLLSQK--TVLYTTHQL-EFLDAADLVLVMKDGKI 797
D ++K L+ L Q+ ++ + +L E L +D VLVM +GK+
Sbjct: 437 DVGAKYEIYK--LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
SGGQ+QRI +ARA+ + DV + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773
+ E G LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ + L T+
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IATAKVEELIDELRQNYTI 215
Query: 774 LYTTHQLE 781
+ TH ++
Sbjct: 216 VIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 60/266 (22%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--YVP 665
P +K + + G +A+ G G+GKS+++ + G R +G+ I GK+ P
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGP 73
Query: 666 QSS-------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD-- 710
+SS I TI ENI G++ F G + +M+A+ D
Sbjct: 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF------GRIDWK--KMYAEADKL 125
Query: 711 ---LSV-------VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH-- 758
L++ VGE LS G++Q +++A+ + S V I D+P DA T T
Sbjct: 126 LARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEP---TDALTDTETE 178
Query: 759 -LFKQCLMGLLSQKT-VLYTTHQL-EFLDAADLVLVMKDGK-IEQSGKYEDLIADQNSEL 814
LF+ + L SQ ++Y +H+L E + D V V +DG+ I + +AD +
Sbjct: 179 SLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE-----VADLTEDS 232
Query: 815 VRQMKAHRKSLDQ---VNPPQEDKCL 837
+ +M RK DQ ++ + L
Sbjct: 233 LIEMMVGRKLEDQYPRLDKAPGEVRL 258
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 48/213 (22%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI-LIDGVDISMIGLQDLRSRLSIIPQD 1291
PG + IG++GR G+GKSTLI+ L + P G I L G+ +L Q
Sbjct: 337 PGSR-IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI------------KLGYFAQH 383
Query: 1292 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ--DQRLLD---------APVAE 1340
+ F +R + PL+ HLA + Q +Q+L D V E
Sbjct: 384 QLEF---LRADESPLQ--------------HLARLAPQELEQKLRDYLGGFGFQGDKVTE 426
Query: 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT-IREETSRCTVITV 1399
+ +S G++ + LA ++ ++ +L+LDE T +D + + I E + V
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHD 486
Query: 1400 AHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
H + + D DL LV D GKV +D LED
Sbjct: 487 RHLLRSTTD-DLYLVHD-GKVEPFDGD---LED 514
|
Length = 638 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSS---------ILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
G A+ G G+GK++L+ I G+I RISG K ++ + S + +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKK---QETFARISGYCEQN 961
Query: 674 -------TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+RE++++ K+ + F +EV+E L+ + ++VG
Sbjct: 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-------AIVGL 1014
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
G+ LS Q++R+ +A + +N + D+P S +DA + + + + +TV+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 776 TTHQ--LEFLDAADLVLVMKDG 795
T HQ ++ +A D +L+MK G
Sbjct: 1075 TIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--S 769
++VG LSGGQKQRI +ARA+ N + I D+ S++D + +L ++ + L
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNE 629
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKD 794
+ + H+L + A+ + V+ +
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 55/218 (25%)
Query: 628 VCGSVG---SGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQ 671
V G +G SGKS+LL +LG S I + K AY+PQ
Sbjct: 39 VTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAA 97
Query: 672 TG-TIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-L 721
G T+RE + G+ + E+V E +L L + R ++ L
Sbjct: 98 EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSL 148
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
SGG++QR +A V +S + D+P SA+D AH Q VL H+L
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---------------QVDVLALVHRL 193
Query: 781 EFLDAADLVLVMKDGKIEQSGKYED-LIADQNSELVRQ 817
++ V+ D I + +Y D L+A + E++ Q
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQ 229
|
Length = 265 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 674 TIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+I +NI FG +M + E L AL +++ + + G +LSGG
Sbjct: 109 SIYDNIAFGVRLFEKLSRAEMDERV-EWALTKAALWNEVK-------DKLHQSGYSLSGG 160
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
Q+QR+ +AR + +V + D+P SA+D T ++ + L TV+ TH ++
Sbjct: 161 QQQRLCIARGIAIRPEVLLLDEPCSALDP-ISTGRIEELITELKQDYTVVIVTHNMQ 216
|
Length = 260 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG 682
G + + G G+GKS+LL+ + G +I+ G+ P +W T R
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQ----PLEAWSATELARHRAYLS 78
Query: 683 KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---------RGIN-LSGGQKQRIQLA 732
+ F V L+Q + L+ V R N LSGG+ QR++LA
Sbjct: 79 QQQTPPFAMPVWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFK----QCLMGLLSQKTVLYTTHQLE 781
V + + D+P +++D + L + C GL ++ ++H L
Sbjct: 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL----AIVMSSHDLN 193
Query: 782 F-LDAADLVLVMKDGKIEQSGKYEDLI 807
L A ++K GK+ SG+ E+++
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRLSIIPQDPMLF- 1295
+ ++G G+GK+TL+ L + GRI+ DG DI+ + +R ++I+P+ +F
Sbjct: 34 VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93
Query: 1296 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355
+ TV NL ++++ ++ + + RL + + G S G++Q++ +
Sbjct: 94 RMTVEENLAMGGFFAERDQFQE----RIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAI 148
Query: 1356 ARVLLKKKRILVLDEATASIDTATDNVIQ-----QTIREETSRCTVITVAHRIPTVIDND 1410
R L+ + R+L+LDE S+ A + Q + +RE+ T+ V N
Sbjct: 149 GRALMSQPRLLLLDE--PSLGLAPIIIQQIFDTIEQLREQG--MTIFLVEQNA-----NQ 199
Query: 1411 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446
+ + D G VLE + +LED + L E +R
Sbjct: 200 ALKLADRGYVLE--NGHVVLEDTGDAL--LANEAVR 231
|
Length = 237 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----S 1262
+IEL N+ +Q P+V G++ T + + +VG +GSGKS A ++ +
Sbjct: 4 QIELRNIALQ--AAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1263 GGRILIDGVDISMIGLQDLRSRL-SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1321
GR+L+DG ++ LR R + I Q+P R+ +PL C
Sbjct: 61 AGRVLLDGKPVA---PCALRGRKIATIMQNP-------RSAFNPLHTMHTH----ARETC 106
Query: 1322 HLAEIVRQDQRLLDAPVAEDGEN-----------WSVG--QRQLVCLARVLLKKKRILVL 1368
D L A A EN S G QR ++ LA LL + ++
Sbjct: 107 LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALA--LLCEAPFIIA 164
Query: 1369 DEATASIDTATDNVIQQTIRE------ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421
DE T T D V Q I + + ++ V H + V D V V+ G+++
Sbjct: 165 DEPT----TDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220
Query: 1422 E 1422
E
Sbjct: 221 E 221
|
Length = 254 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ + +G+ A+ G G GK++ L +I L R++G I + G+ Y P+ +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDPVAM 83
Query: 672 ---------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWAD 708
T ++ +N++ G +D E L G AL +++
Sbjct: 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---- 139
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ LSGGQ+QR+ +ARA+ ++ + D+P SA+D + + + LM L
Sbjct: 140 ---DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTDL 194
Query: 769 SQ-KTVLYTTHQL 780
+ T++ TH +
Sbjct: 195 KKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 24/200 (12%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQ 1296
+G+ G G+G+S L++ L+ + G++ +DG I + +D +R+ + + P+D +
Sbjct: 282 VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK-AE 340
Query: 1297 G-----TVRTNLD--PLEQHSD-----QEIWEVINKCHLAEIVRQDQRL-LDAPVAE-DG 1342
G +V N++ H WE N A+ R + L + P E
Sbjct: 341 GIIPVHSVADNINISARRHHLRAGCLINNRWEAEN----AD--RFIRSLNIKTPSREQLI 394
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAH 1401
N S G +Q L R L + ++++LDE T ID + I I E ++ V+ V+
Sbjct: 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454
Query: 1402 RIPTVID-NDLVLVLDEGKV 1420
+P V+ D ++V+ EG++
Sbjct: 455 DLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE----GCALNQDIEMWADGD 710
++ K YV + G + E L K + ++EV+E L++D+
Sbjct: 161 LRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLDRDVS------ 212
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG+ QR+ +A A+ ++DVY FD+P S +D + +
Sbjct: 213 ---------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDG 263
Query: 771 KTVLYTTHQLEFLDA-ADLVLVM 792
K V+ H L LD +D V ++
Sbjct: 264 KYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 48/240 (20%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI---LIDGVDISMIGLQD------LR 1282
+PGE +G+VG +GSGK+TL++ + + P G + + DG + + + LR
Sbjct: 30 YPGEV-LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 1283 SRLSIIPQDPMLFQGTVRTNLDPLEQH--SDQEIWE---VINKCHLAEIVRQDQRLL--- 1334
+ + Q+P D L + I E I H I + Q L
Sbjct: 89 TEWGFVHQNP----------RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138
Query: 1335 --------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NV 1382
D P +S G +Q + +AR L+ + R++ +DE T +D + ++
Sbjct: 139 EIDLDRIDDLPRT-----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 193
Query: 1383 IQQTIREETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
++ +RE V+ V H + + D ++V+ +G+V+E ++L+D +++L+
Sbjct: 194 LRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQA----LFRVVEPSG----GRILIDGVDISMIGLQDLRSR 1284
PG ++GR G+GKSTL++A L P G G + ++G ++ I L
Sbjct: 26 PGRV-TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARL 84
Query: 1285 LSIIPQD-----PMLFQGTVRTNLDP------LEQHSDQEI-WEVINKCHLAEIVRQDQR 1332
+++PQ + V P H D EI W+ + +V +D
Sbjct: 85 RAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT 144
Query: 1333 LLDAPVAEDGENWSVGQRQLVCLARVLLK---------KKRILVLDEATASIDTATDNVI 1383
L S G+ V ARVL + R L+LDE TA++D A + +
Sbjct: 145 TL-----------SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRL 193
Query: 1384 QQTIREETS--RCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1430
T+R V+ + H + D + +L +G ++ + +P +L
Sbjct: 194 LDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 721 LSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
LSGG+K+ LA + +YI D+ +D G L + L L+ V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 777 THQLEFLDAADLVLVMK 793
TH E + AD ++ +K
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
I KG V + G G GKS+LLS ++G + +G + ++ ++ + ++ Q G
Sbjct: 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIG--- 80
Query: 677 ENILFGKDM---RQSFYEEVLEGCALNQDIE-----MWADGDLSVVGERGI------NLS 722
ILF + S + +L AL ++ A+ L G G LS
Sbjct: 81 --ILFQDALLFPHLSVGQNLL--FALPATLKGNARRNAANAALERSGLDGAFHQDPATLS 136
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTT 777
GGQ+ R+ L RA+ + + D+PFS +D L Q + S+ + T
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWVFSEVRAAGIPTVQVT 192
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
H L+ + A V+ M + EQ+
Sbjct: 193 HDLQDVPAGSRVIEM--AQWEQN 213
|
Length = 213 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G+ G+GK++LL ++ G+ PR + I GK + W +RE
Sbjct: 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDI----TDWQTAKIMRE 80
Query: 678 NILFGKDMRQSF----YEEVLEGCALNQDIEMWADGDLSVVG----------ERGINLSG 723
+ + R+ F EE L + + + + V +R +SG
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 724 GQKQRIQLARAVYSNSDVYIFDDP 747
G++Q + + RA+ S + + D+P
Sbjct: 141 GEQQMLAIGRALMSQPRLLLLDEP 164
|
Length = 237 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 28/146 (19%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299
+VG+ G+GK+T+I+AL ++ G S+ ++ +G V
Sbjct: 27 IVGQNGAGKTTIIEALK----------------YALTGELPPNSKGGAHDPK-LIREGEV 69
Query: 1300 RTNLDPLEQHSDQEIWEVINKCHLAE---IVRQDQRLLDAPVAEDGENWSVGQRQLVC-- 1354
R + ++++ + + + + E Q + + P+ + S G++ L
Sbjct: 70 RAQVKLAFENANGKKYTITRSLAILENVIFCHQGE--SNWPLLDMRGRCSGGEKVLASLI 127
Query: 1355 ----LARVLLKKKRILVLDEATASID 1376
LA IL LDE T ++D
Sbjct: 128 IRLALAETFGSNCGILALDEPTTNLD 153
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-04
Identities = 45/209 (21%), Positives = 96/209 (45%), Gaps = 23/209 (11%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+ I+ P + G++G G+GK+T + + ++EP+ G I +G +S Q++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+ +P++ L+ + +Q + + AEI ++ Q L+ E
Sbjct: 73 RIGYLPEERGLYP-----KMTVEDQ---LKYLAELKGMPKAEIQKKLQAWLER--LEIVG 122
Query: 1344 N-------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CT 1395
S G +Q + ++ + +L+LDE + +D +++ I E T
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 1396 VITVAHRIPTVID-NDLVLVLDEGKVLEY 1423
+I +HR+ V + D +L+L +G+ + Y
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI--LGEI---PRISGAAIKVHGKKAY--------- 663
++I + A+ G GSGKS+LL L E+ R+SG + G+ +
Sbjct: 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY-LDGQDIFKMDVIELRR 82
Query: 664 -------VPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGD 710
+P I +I EN+ G + ++ E V AL + ++W +
Sbjct: 83 RVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRW--AL-EKAQLWDEVK 137
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ G LSGGQ+QR+ +ARA+ +V + D+P + +D T + + L
Sbjct: 138 DRLDAPAG-KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN-TAKIESLFLELKKD 195
Query: 771 KTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + G+I + G ++ + EL +
Sbjct: 196 MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEK 243
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 630 GSVGSGKS-------SLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-IQT-----GTIR 676
G G GKS SL+S G + G I + Y Q S+ QT T+
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLARAV 735
+N++F +R + D+E +A D + + I LSGG+KQRI L R +
Sbjct: 99 DNLIFPWQIRNQQPDPA----IFLDDLERFALPDTIL--TKNIAELSGGEKQRISLIRNL 152
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVM 792
V + D+ SA+D ++ + + + ++ VL+ TH + ++ AD V+ +
Sbjct: 153 QFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTH 778
+LSGG+KQR+ LAR + +++ D+P +D T + + + +++ T+H
Sbjct: 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
E + D +D + +++G+I++ G ++++A
Sbjct: 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI------------LGEIP----RISGAAIKV---- 657
M I K + A+ G G GKS+ L SI GEI I + I V
Sbjct: 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101
Query: 658 ------HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
K P+S + I + + + R+S +E++E +W D
Sbjct: 102 REIGMVFQKPNPFPKSIY---NNITHALKYAGERRKSVLDEIVEESLTKA--ALW-DEVK 155
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +AR + V + D+P SA+D + + ++ + L +
Sbjct: 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEY 214
Query: 772 TVLYTTHQLE 781
+++ TH ++
Sbjct: 215 SIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGG-----RILIDGVDISMIGLQDL--RSRLSII 1288
+ G +G +G GKST++++L R+ + G + G D+ G+ + R + ++
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 1289 PQDPMLFQGTVRTN------LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
Q P F ++ N L+ + + + L + V+ ++ G
Sbjct: 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV-------SG 147
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402
+ S GQ+Q +C+AR + + +L+LDE +++D +++ + E T+ V H
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Query: 1403 IPTVI 1407
+ I
Sbjct: 208 MQQAI 212
|
Length = 261 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 58/246 (23%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I+L + Y L IT P + + ++G +G+GKS+L++ L + P G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1268 IDG--------VDISMIGLQDLRSRLSIIPQDPMLFQG-------TVRTNL--DPL---- 1306
I G I ++LR + M+FQ TV+ NL P
Sbjct: 61 IAGNHFDFSKTPSDKAI--RELRRNVG------MVFQQYNLWPHLTVQQNLIEAPCRVLG 112
Query: 1307 --EQHSDQEIWEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
+ + +++ + L R L S GQ+Q V +AR L+ +
Sbjct: 113 LSKDQALARAEKLLERLRLKPYADRFPLHL------------SGGQQQRVAIARALMMEP 160
Query: 1364 RILVLDEATASIDTATDNVIQQTIRE--ETSRCTVIT-----VAHRIPTVIDNDLVLVLD 1416
++L+ DE TA++D I IRE ET VI VA + + V+ ++
Sbjct: 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS-----RVVYME 215
Query: 1417 EGKVLE 1422
G ++E
Sbjct: 216 NGHIVE 221
|
Length = 242 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 43/220 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQSS------WIQTG 673
KG + V G +G+G++ L+ + G +PR SG + + G PQ +I
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGY-VTLDGHEVVTRSPQDGLANGIVYISED 335
Query: 674 TIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDL------------SVVGE 716
R+ ++ G ++++ L G +L E A D +G
Sbjct: 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG- 394
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCLMGLLSQ 770
LSGG +Q++ +AR + + V I D+P VD + FK + +
Sbjct: 395 ---LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSI--- 448
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L ++ E L +D +LVM +G+I SG++ A Q
Sbjct: 449 --ILVSSEMPEVLGMSDRILVMHEGRI--SGEFTREQATQ 484
|
Length = 501 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 50/249 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-GKK---AYVPQSSWIQTGTI 675
+ +G K+A+ G G GK++LL +LG++ SG ++H G K AY Q
Sbjct: 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG---RIHCGTKLEVAYFDQH-------- 390
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVG---------ERGIN----L 721
R + D ++ + + EG Q++ + +G V+G +R + L
Sbjct: 391 RAEL----DPEKTVMDNLAEG---KQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKAL 441
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779
SGG++ R+ LAR S++ I D+P + +D T + L LL Q TVL +H
Sbjct: 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LELLEELLDSYQGTVLLVSHD 496
Query: 780 LEFLD--AADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKC 836
+F+D + + +GKI + G Y D A Q +K + + +
Sbjct: 497 RQFVDNTVTECWIFEGNGKIGRYVGGYHD--ARQQQAQYLALKQPAVKKKEEAAAPKAET 554
Query: 837 LSRVPCQMS 845
+ R ++S
Sbjct: 555 VKRSSKKLS 563
|
Length = 635 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG QR+ +A A+ + I D+P +A+D + + L+ L QK ++ T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H L + +AA ++VM G++ ++GK D+
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCL-MGLLSQKTV 773
LSGG++QR+ +A A+ + ++ I D+P +A+D + +Q L MGL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL------ 210
Query: 774 LYTTHQLEFL-DAADLVLVMKDGK-IEQS 800
L+ TH L + AD V VM++G+ +EQ+
Sbjct: 211 LFITHNLSIVRKLADRVAVMQNGRCVEQN 239
|
Length = 529 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI-----QTGTIREN--ILFG 682
G G+GKS+LL I G I R S I G ++ + Q G I ++ +L
Sbjct: 35 GHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL-- 91
Query: 683 KDMRQSFYEEV----LEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLA 732
M ++ Y+ V + A DI L VG I LSGG++QR+ +A
Sbjct: 92 --MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149
Query: 733 RAVYSNSDVYIFDDPFSAVD 752
RAV + V + D+P +D
Sbjct: 150 RAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQDP---- 1292
+GV G G+G++ L++ L+ + + G + +DG ++ QD L + + I +D
Sbjct: 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340
Query: 1293 MLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQ--RL-------LDAPVAED 1341
++ +V+ N L L S + H E RL ++ +
Sbjct: 341 LVLGMSVKENMSLTALRYFSRA--GGSLK--HADEQQAVSDFIRLFNIKTPSMEQAIG-- 394
Query: 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVA 1400
S G +Q V +AR L+ + ++L+LDE T +D I Q I + + ++I V+
Sbjct: 395 --LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
Query: 1401 HRIPTVID-NDLVLVLDEGKV 1420
+P V+ +D +LV+ EG++
Sbjct: 453 SEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 649 RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
++ +KV K YV G + E +L KD R +E+++ L
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGE-LLKKKDERGKL-DELVDQLELRH------- 131
Query: 709 GDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R I LSGG+ QR+ +A A+ ++D Y FD+P S +D
Sbjct: 132 -----VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 43/222 (19%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1280
+L G+ + I ++G +GSGKSTL+ L + + S G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1281 LRSR--------LSIIP--------QDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1324
LR++ +IP + P L +G + S ++ + L
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------SRQSRNGAKALLEQLGLG 137
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1384
+ RL P G G++Q V LAR + +L DE T ++D T + I
Sbjct: 138 K------RLDHLPAQLSG-----GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 1385 QTI----REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422
+ RE + T+I V H + D L L G++ E
Sbjct: 187 DLLFSLNREHGT--TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 63/261 (24%), Positives = 125/261 (47%), Gaps = 43/261 (16%)
Query: 1210 LENLLVQYNPTLPMV-LKGITCTFPGEKKIG-------------VVGRTGSGKSTLIQAL 1255
+ L Q + P+V L+GI+ +F G++ I ++G +G GK+T+++ +
Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD---PLEQHSD 1311
P GRI++DG DI+ + + ++ + Q LF TV N+ +++
Sbjct: 61 AGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118
Query: 1312 QEI----WEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366
EI E + L E R+ +L S GQ+Q V +AR ++ K ++L
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRKPHQL------------SGGQQQRVAIARAVVNKPKVL 166
Query: 1367 VLDEATASIDTATDNVIQQTIR--EETSRCTVITVAH-RIPTVIDNDLVLVLDEGKVLEY 1423
+LDE+ +++D +Q ++ + T + V H + + +D ++V+ +G++ +
Sbjct: 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 1424 DSPRQLLEDNSSSFSKLVAEF 1444
+PR++ E+ + F VA F
Sbjct: 227 GTPREIYEEPKNLF---VARF 244
|
Length = 375 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQ 779
LS G++ R+ LA+ + + I D+P +D T + L ++T + +H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 780 LEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
++F LD D +M+DGKI + G E+++ +
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
IKV K YV + G +RE +L D R +EV+E L L +
Sbjct: 160 IKVVHKPQYVDLIPKVFKGKVRE-LLKKVDERGKL-DEVVE--RLG----------LENI 205
Query: 715 GERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGL 767
+R I LSGG+ QR+ +A A+ ++D Y FD+P S +D +Q L L
Sbjct: 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-------IRQRLNVARLIREL 258
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVM 792
K VL H L LD AD V +
Sbjct: 259 AEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 35/227 (15%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP----RISG---------AAIKVHGKKAYV---- 664
+G +A+ G GSGKS ++ LG +P + +G A + G+K
Sbjct: 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQN 87
Query: 665 PQSSWIQTGTI----RENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
P+S++ T+ RE L GK + LE L + V+
Sbjct: 88 PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL--------ENAARVLKLYPF 139
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+SGG QR+ +A A+ + I D+P + +D + L ++ ++ +L T
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVT 198
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM-KAHR 822
H + + AD V VM G+I + G E L + R + AH
Sbjct: 199 HDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245
|
Length = 254 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 51/181 (28%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIPQD 1291
E+ + +VGR G+GKSTL++ L V GRI+ + QDL +RL QD
Sbjct: 28 DNER-VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE---------QDLIVARL---QQD 74
Query: 1292 -PMLFQGTV-----------------------RTNLDPLEQHSD-----QEIWEVINKCH 1322
P +GTV DP E++ + QE + N
Sbjct: 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ 134
Query: 1323 LAEIVRQDQRLL----DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L + + L DA ++ W R+ L R L+ +L+LDE T +D
Sbjct: 135 LENRINEVLAQLGLDPDAALSSLSGGW---LRK-AALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 1379 T 1379
T
Sbjct: 191 T 191
|
Length = 635 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 46/204 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS- 667
+A+ G GSGKS+LL+ IL + S + + G+ +V QS
Sbjct: 39 IALIGESGSGKSTLLA-ILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF 97
Query: 668 SWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----G 718
I T EN+ L G+ RQS N + L G+R
Sbjct: 98 MLIPTLNALENVELPALLRGESSRQS----------RNGAKALLEQLGL---GKRLDHLP 144
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
LSGG++QR+ LARA DV D+P +D TG + L+ L+++ T++
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD--LLFSLNREHGTTLIL 202
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQ 799
TH L+ D L + +G++++
Sbjct: 203 VTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIP--QDPML 1294
IG+VG GSGKSTL + + P+ G++ +G ++S+I + L +L+ I + ML
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISAGLSGQLTGIENIEFKML 111
Query: 1295 FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354
G R + + ++I L E + Q PV + +S G R +
Sbjct: 112 CMGFKRKEIKAMTP-------KIIEFSELGEFIYQ-------PV----KKYSSGMRAKLG 153
Query: 1355 LARVLLKKKRILVLDEATASID-TATDNVIQQTIREETSRCTVITVAHRIPTV 1406
+ + ILV+DEA + D T + + + T+ V+H + V
Sbjct: 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206
|
Length = 264 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1458 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-276 Score=2627.13 Aligned_cols=1235 Identities=43% Similarity=0.739 Sum_probs=1154.8
Q ss_pred CCCcccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHH
Q 000505 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1458)
Q Consensus 201 ~~p~~~a~~--~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1458)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|+++|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999999854 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1458)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~ 355 (1458)
++++.++++++.+.+.|++|.+|+.+++|+++++. ..+. ||++|++++++.++++++.|||+|..+++|+|+|+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998743 3444 999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCC---CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000505 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1458)
Q Consensus 356 ~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~ 432 (1458)
+||||+|++++.++ +.|+|+|+|++|++|+.++++++|.+|.+|+|+++++++||+++| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999999986 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1458)
Q Consensus 433 ~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v 512 (1458)
.+++++++++|++.|+.+|+|++.|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 000505 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1458)
Q Consensus 513 ~~~tF~~~~-~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1458)
+++||++|+ ..|+.++++++|+++++||+|+.|+.++|..++.++|++||++|+++||..+| +++..++.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999999 5554444455556778
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEcCCCC
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~ 669 (1458)
|+++|++|+|+++ ++.++|+| |++|++|+++||||++||||||||++|+|||++.+|++ .++|++|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999985 45679999 99999999999999999999999999999999999997 99999999999999
Q ss_pred CCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000505 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1458)
Q Consensus 670 i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~s 749 (1458)
|+||||||||+||.|||++||++|+++|+|++|++.+|.||+|+|||+|.||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCC
Q 000505 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1458)
Q Consensus 750 aLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (1458)
|||+|+++|||++|+++.+++||+|+|||++++|++||+|++|+||+|.+.|+|+|+++ .+.++.++..+.+ .+..+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~--~~~~~ 749 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEE--SEQEE 749 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccc--hhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997 7777777632221 11111
Q ss_pred CCCCCcccc---cCcc-----CccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000505 830 PPQEDKCLS---RVPC-----QMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQV 901 (1458)
Q Consensus 830 ~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~ 901 (1458)
+........ ..+. ...+..++ +....+.+..+..++|+++.|.++|++|+.|+++.+|+..+++++++.+
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v 827 (1381)
T KOG0054|consen 750 EASEKDLESGESSRESESRSLESLSSEEE--KSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFV 827 (1381)
T ss_pred ccccccccccccccchhhhhhhhhccccc--ccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 000000000 0000 00000000 0011112245677788999999999999999999888888888888999
Q ss_pred HHHHHHhhhhhHHHhhccccc--c---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Q 000505 902 LFQALQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1458)
Q Consensus 902 ~~~~~~~~~~~wl~~~~~~~~--~---~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ 976 (1458)
+.++++++++||+++|++... . .+...|+++|+++++++.++.++|++.+...++++|+++|++|+++++|+||+
T Consensus 828 ~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~ 907 (1381)
T KOG0054|consen 828 LTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMS 907 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 999999999999999996432 1 35678999999999999999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056 (1458)
Q Consensus 977 ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~r 1056 (1458)
|||+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||++|
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR 987 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR 987 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000505 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLP 1136 (1458)
Q Consensus 1057 l~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~ 1136 (1458)
+++.+|||+++||+||+.|+.|||||++|++|.+++..++|.+++++|...+++||+++|+|+++++++++++++++..+
T Consensus 988 LesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~ 1067 (1381)
T KOG0054|consen 988 LESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP 1067 (1381)
T ss_pred hhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEE
Q 000505 1137 RSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQ 1216 (1458)
Q Consensus 1137 ~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~ 1216 (1458)
.+..+||.+|++++|+++++..++|++|+.+++|++|+|||||.||+++|+|+|+..+..+||++||++|+|+|+|+++|
T Consensus 1068 ~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~R 1147 (1381)
T KOG0054|consen 1068 SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLR 1147 (1381)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEE
Confidence 66678999999999999999999999999999999999999999999999998887777779999999999999999999
Q ss_pred eCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCcc
Q 000505 1217 YNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296 (1458)
Q Consensus 1217 Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1296 (1458)
|+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||+++++|||||+||+
T Consensus 1148 Yrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs 1227 (1381)
T KOG0054|consen 1148 YRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS 1227 (1381)
T ss_pred eCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 000505 1297 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376 (1458)
Q Consensus 1297 gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD 1376 (1458)
||+|+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|
T Consensus 1228 GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1228 GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhhcc
Q 000505 1377 TATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449 (1458)
Q Consensus 1377 ~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~~~ 1449 (1458)
++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.+++.++.
T Consensus 1308 ~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-211 Score=2135.01 Aligned_cols=1414 Identities=31% Similarity=0.510 Sum_probs=1176.8
Q ss_pred hhhhhhhHHhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccc
Q 000505 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSFK 84 (1458)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (1458)
...--|-++.++..+++++++...+....+.....+... ...+....+.++|+....+++...+... ....+ .+ +
T Consensus 30 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 107 (1622)
T PLN03130 30 TPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNLDGQTS-L 107 (1622)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccc-c
Confidence 344456566666666666666555554422111111101 1222345556666666666654443332 11111 12 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-----cccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 000505 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1458)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1458)
...+...++.+++..+++++.+.++ +.+++++.+++||++. +++.+ . ........... ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNL-V---LSVKEYYSSFV--LYLYISEV 181 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3344443555666666522111111 1446799999999998 65554 2 11222222210 01122222
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCCCCCC------ccccccccccCCCCcccCChhHHHHHHhHHHHHHhhccCCC
Q 000505 157 DFVSLPLLVLLCFNATYACCCARDPSDLDIPLL------REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKL 230 (1458)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~a~~~s~~~f~Wl~~l~~~g~~~~L 230 (1458)
.+.+.+.+..+. .+.|..+. ..+.|.. .+.++.+.+.+++||++||+|||++|||++|++++||+++|
T Consensus 182 ~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L 255 (1622)
T PLN03130 182 AAQVLFGILLLV----YFPNLDPY--PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255 (1622)
T ss_pred HHHHHHHHHHHH----HHhcCCCC--cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 222221111100 01122221 0111100 01111233467799999999999999999999999999999
Q ss_pred CCCCCCCCCcCCcHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000505 231 ELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH 309 (1458)
Q Consensus 231 ~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~ 309 (1458)
+.+|||+|+++|+++.++++|++.|+++.+ ++|+|+++++++||+.+++.++++++..++.+++|++++.+++++.+++
T Consensus 256 ~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~ 335 (1622)
T PLN03130 256 TEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE 335 (1622)
T ss_pred ChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998754 5689999999999999999999999999999999999999999997644
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHhhHHHHH
Q 000505 310 DHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIG 386 (1458)
Q Consensus 310 ~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~ 386 (1458)
. ... ||+++++++++.++.+++.++|++...++++++|+.+...||+|.++++.... ++|+++|+|++|++++.
T Consensus 336 ~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~ 412 (1622)
T PLN03130 336 P--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQ 412 (1622)
T ss_pred c--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2 334 78888777777777788888999999999999999999999999999987554 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000505 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466 (1458)
Q Consensus 387 ~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~ 466 (1458)
+++..+|.+|..|+++++++++||..+| +++++|++++++++|++..+++++++.++++|+.+|+|++.++|+|+|||+
T Consensus 413 ~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~ 491 (1622)
T PLN03130 413 QICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDT 491 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000505 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (1458)
Q Consensus 467 IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl 546 (1458)
||+|+||+.|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++++|++.+|++++++++++.|+
T Consensus 492 IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl 571 (1622)
T PLN03130 492 VKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPL 571 (1622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888898889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcE
Q 000505 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSK 625 (1458)
Q Consensus 547 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~ 625 (1458)
..+|..+..+.++++|++||++||..+|..+... .+.......|+++|++|+|+.+ +..+.|+| |+++++|++
T Consensus 572 ~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~ 645 (1622)
T PLN03130 572 FMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDSK-----AERPTLSNINLDVPVGSL 645 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccCC-----CCCceeeceeEEecCCCE
Confidence 9999999999999999999999998776321111 1111123469999999999854 34678999 999999999
Q ss_pred EEEEccCCCChhHHHHHHhCCccCCC-CcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1458)
Q Consensus 626 ~~ivG~~GsGKSTLl~~llG~~~~~~-G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~ 704 (1458)
++|+||+|||||||+++|+|+++|.+ |++ .+++++|||+|+||++++||||||+||+++++++|++++++|+|++|++
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 646 VAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999 886 8999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhc
Q 000505 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1458)
Q Consensus 705 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 784 (1458)
.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||++++++
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~ 804 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS 804 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred cCCEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCc-c-cccCccCc--cchhhhccc-CCCCCC
Q 000505 785 AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK-C-LSRVPCQM--SQITEERFA-RPISCG 859 (1458)
Q Consensus 785 ~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~-~~~~~~ 859 (1458)
.||+|++|+||+|++.|+++|+++ .+..+.++...+....+..+...+.. . ....+... .....+... +.....
T Consensus 805 ~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1622)
T PLN03130 805 QVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKE 883 (1622)
T ss_pred hCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 56666666654321110000000000 0 00000000 000000000 000001
Q ss_pred CCCCCCccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhccccc--ccccchhHHHHHHHH
Q 000505 860 EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLS 937 (1458)
Q Consensus 860 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~ 937 (1458)
......++|+++.|.++|++|+.|+++.++.+++.+++++.++.+++.+++++|+++|++... ......|+++|++++
T Consensus 884 ~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~ 963 (1622)
T PLN03130 884 GKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLS 963 (1622)
T ss_pred cchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHH
Confidence 112345678889999999999999999777666666666777888888999999999986322 122456788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHH
Q 000505 938 GGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLS 1017 (1458)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~ 1017 (1458)
++..++.+++.+++...+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++
T Consensus 964 ~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~ 1043 (1622)
T PLN03130 964 FGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLS 1043 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Q 000505 1018 IIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLID 1097 (1458)
Q Consensus 1018 ~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d 1097 (1458)
.+++++.++|..+++++|+.++++.++++|.+++|+++|.+..+++|+++|+.|+++|+.|||+|+++++|.+.+.+..|
T Consensus 1044 ~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~ 1123 (1622)
T PLN03130 1044 TFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMD 1123 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999988887777888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000505 1098 DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS----AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1458)
Q Consensus 1098 ~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~ 1173 (1458)
.+.+..+.....++|++.++++++++++.+...+.+..... ...++.+|++++|++.+...+.++++.+.++|+.+
T Consensus 1124 ~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1124 NNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887666554443332211 11267889999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH
Q 000505 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1458)
Q Consensus 1174 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~ 1253 (1458)
+|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||++
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~ 1283 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLN 1283 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999998876544445566789999999999999999988788999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccc
Q 000505 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1333 (1458)
Q Consensus 1254 ~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~g 1333 (1458)
+|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|+|
T Consensus 1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEE
Q 000505 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVL 1413 (1458)
Q Consensus 1334 Ldt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVl 1413 (1458)
|||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+++||||+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000505 1414 VLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1447 (1458)
Q Consensus 1414 vL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~ 1447 (1458)
||++|+|+|+|+|++|+++++|.|++|+++.+..
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 9999999999999999988789999999887653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-207 Score=2099.21 Aligned_cols=1415 Identities=30% Similarity=0.503 Sum_probs=1172.9
Q ss_pred hhhhhhhHHhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccc
Q 000505 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSFK 84 (1458)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (1458)
...--|-++..+..+++++++...+....+++....+.. ...+....+.++|+....+++...+... ....+ .. +
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 107 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISL-FDMDEETD-L 107 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccc-c
Confidence 334456566666666666666555554432222211101 1222345556666666666553333222 11111 12 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-----cccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 000505 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1458)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1458)
...+...+..+++..+++++.+.++ +.+++++.+++||++. +++.+ . ........... ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1495)
T PLN03232 108 PPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDL-V---LPLKNSINRTA--LYLCISSR 181 (1495)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3334443555666666622111122 1446799999999998 66555 2 11111111110 01122222
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCC---CCCCc--cccccccccCCCCcccCChhHHHHHHhHHHHHHhhccCCCC
Q 000505 157 DFVSLPLLVLLCFNATYACCCARDPSDLD---IPLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLE 231 (1458)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~p~~~a~~~s~~~f~Wl~~l~~~g~~~~L~ 231 (1458)
.+.+.+.+..+. .+.|..+. +... .+..+ +.+..+.+.+++||++||+|||++|||++|++++||+++|+
T Consensus 182 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~ 256 (1495)
T PLN03232 182 CCQALFGILLLV----YIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPIT 256 (1495)
T ss_pred HHHHHHHHHHHH----hcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222221111100 01122211 0000 00011 00112334678999999999999999999999999999999
Q ss_pred CCCCCCCCcCCcHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000505 232 LLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD 310 (1458)
Q Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~ 310 (1458)
.+|||+|+++|+++.++++|++.|+++.+ ++++|+++++++||+.++..++++++.+++.+++|++++.+++++++++.
T Consensus 257 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~ 336 (1495)
T PLN03232 257 EKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP 336 (1495)
T ss_pred hhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999998754 46899999999999999999999999999999999999999999976442
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHhhHHHHHH
Q 000505 311 HSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGD 387 (1458)
Q Consensus 311 ~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~ 387 (1458)
... |+.++++++++.++.+++.++|++...++++++|+.+...+|+|.++++.... ++|+++|+|++|++++.+
T Consensus 337 --~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~ 413 (1495)
T PLN03232 337 --AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQ 413 (1495)
T ss_pred --cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 334 88888888889999999999999999999999999999999999999987644 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000505 388 FFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467 (1458)
Q Consensus 388 ~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~I 467 (1458)
+..++|.+|..|+++++++++||..+| +++++|++++++++|++..+++++++.++++|+.+|+|.+.++|+++|||+|
T Consensus 414 ~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~I 492 (1495)
T PLN03232 414 IAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTV 492 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 000505 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIY 547 (1458)
Q Consensus 468 Kl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~ 547 (1458)
|+|+||+.|.+++++.|++|++..++..+..+...++....|.++++++|++|.+.++++|++.+|+++++++.+..|+.
T Consensus 493 K~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~ 572 (1495)
T PLN03232 493 KCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLN 572 (1495)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887777788888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEE
Q 000505 548 NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKV 626 (1458)
Q Consensus 548 ~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~ 626 (1458)
.+|..+..+.++++|++||++||+.+|+.+... .+.......|+++|++|+|+.+ ++.++|+| ||++++||++
T Consensus 573 ~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~v 646 (1495)
T PLN03232 573 MLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSLV 646 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCEE
Confidence 999999999999999999999998776321111 1111123469999999999854 34678999 9999999999
Q ss_pred EEEccCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhh
Q 000505 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706 (1458)
Q Consensus 627 ~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l 706 (1458)
+|+||+|||||||+++|+|+++|.+|++..+++.+|||+|+||++++||||||+||+++++++|++++++|+|.+|++.+
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~L 726 (1495)
T PLN03232 647 AIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLL 726 (1495)
T ss_pred EEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhC
Confidence 99999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccC
Q 000505 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786 (1458)
Q Consensus 707 ~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 786 (1458)
|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.|
T Consensus 727 p~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred CCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCCCCC-CCcccccCccCccchhhhcccCCC-CCCCCCCC
Q 000505 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ-EDKCLSRVPCQMSQITEERFARPI-SCGEFSGR 864 (1458)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 864 (1458)
|+|++|+||+|++.|+++|+.+ .+..+.++...+....+..+..+ .+......+.......++...... .+......
T Consensus 807 D~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1495)
T PLN03232 807 DRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVL 885 (1495)
T ss_pred CEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 9999999999999999999987 55666666544321111000000 000000000000000000000000 00011234
Q ss_pred CccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhccccc--ccccchhHHHHHHHHHHHHH
Q 000505 865 SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSF 942 (1458)
Q Consensus 865 ~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~~ 942 (1458)
.++|+++.|.++|++|+.|+++.++++.+.+++++.++.+++.+++++|+++|++... ......|+++|++++++..+
T Consensus 886 ~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~ 965 (1495)
T PLN03232 886 VKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVA 965 (1495)
T ss_pred hhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 6678889999999999999999877666666666777788888999999999985321 22346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000505 943 FILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM 1022 (1458)
Q Consensus 943 ~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~ 1022 (1458)
+.+++.+++...+.++++++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++..++.+++.++++
T Consensus 966 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 966 VTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Q 000505 1023 SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102 (1458)
Q Consensus 1023 ~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~ 1102 (1458)
+..++...++++|+.++++.++.+|.+++|+++|.+..+++|+++|++|+++|+.|||+|+++++|.+++.+..|.+.+.
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~ 1125 (1495)
T PLN03232 1046 GTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88887777777788777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000505 1103 TFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI-----DPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1177 (1458)
Q Consensus 1103 ~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sve 1177 (1458)
.+.....++|+..++++++.+++.+...+.+.. .+.. .++.+|++++|+..+...+.++++.+.++|+.++|+|
T Consensus 1126 ~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~e 1204 (1495)
T PLN03232 1126 TLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVE 1204 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999889999999999988766555444433322 2221 2567888999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhc
Q 000505 1178 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1178 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~r 1257 (1458)
|+.+|.+.|+|++...+...+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|
T Consensus 1205 Ri~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232 1205 RVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred HHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999888654333344566899999999999999998877889999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000505 1258 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337 (1458)
Q Consensus 1258 l~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~ 1337 (1458)
+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++++++++|+++|+||||+
T Consensus 1285 l~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1364 (1495)
T PLN03232 1285 IVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAE 1364 (1495)
T ss_pred CCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000505 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1338 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~ 1417 (1458)
|+|+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++||||+||||++|+++||||+||++
T Consensus 1365 v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSS 1444 (1495)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000505 1418 GKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1447 (1458)
Q Consensus 1418 G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~ 1447 (1458)
|+|+|+|+|+||+++++|.|++|+++....
T Consensus 1445 G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1445 GQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999998888999999887654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-204 Score=2072.29 Aligned_cols=1232 Identities=33% Similarity=0.591 Sum_probs=1097.8
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcc------------------
Q 000505 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1458)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------ 260 (1458)
.+.+||++||++||++|||+||++++|||++|+.+|||+++++|+++.++++|++.|+++.+
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 45689999999999999999999999999999999999999999999999999999986510
Q ss_pred ------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 000505 261 ------------------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1458)
Q Consensus 261 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~ 316 (1458)
++++|+++++++||+.++..++++++.+++.+++|++++.+++|+.++.. ....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-
Confidence 23689999999999999999999999999999999999999999976543 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHhhHHHHHHHHHHHH
Q 000505 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1458)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~~ 393 (1458)
||++++++++..++.+++.+||+|...++|+++|++|+..||+|+|+++.... ++|+++|+|++|++|+.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999987655 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccH
Q 000505 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1458)
Q Consensus 394 ~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE 473 (1458)
.+|..|+++++++++||..+| +++++|++++++++|++..+++.++++++++|+.+|+|++.++|+|+|||.||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1458)
Q Consensus 474 ~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~~~--~~~L~~~~vft~lalf~~l~~pl~~lp~ 551 (1458)
+.|.+++++.|++|++..++..+...+..+.++.+|.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888889999999999998876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCC-CCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEE
Q 000505 552 LISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1458)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~i 628 (1458)
.+..+.++++|++||++||+.+|. ++..+.... ......|+++|++|+|+.+ ..+.|+| |+++++|++++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 999999999999999999987662 221111111 1112369999999999753 3578999 999999999999
Q ss_pred EccCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcC
Q 000505 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1458)
Q Consensus 629 vG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~ 708 (1458)
+||||||||||+++|+|+++|++|++ .++|++|||+|+||++++||+|||.||.++++++|++++++|++.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHH--HHHhCCcEEEEEecccchhccC
Q 000505 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAA 786 (1458)
Q Consensus 709 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~ 786 (1458)
||+|.+|++|.+|||||||||+||||+|++||+||||||||+||+++++++++.++ .+.++++|+|+|||++++++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 99999999999999999999999999999999999999999999999999999887 3566789999999999999999
Q ss_pred CEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCC--CCC------CCCcccc--c----------Ccc-C--
Q 000505 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPP------QEDKCLS--R----------VPC-Q-- 843 (1458)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~--~----------~~~-~-- 843 (1458)
|+|++|++|+|++.|+++++.+ .+..+.++...+....+.. +.. .+..... . .+. +
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999987 5555666554322111000 000 0000000 0 000 0
Q ss_pred --ccc-hhh-hc----c---cCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 000505 844 --MSQ-ITE-ER----F---ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1458)
Q Consensus 844 --~~~-~~~-~~----~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1458)
... ... ++ . ..........+..++|+++.|++++++|+.|+++.+. ..+++++++.++.+++.+++++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00 0 0000000112344567788999999999999998753 4444555556677888899999
Q ss_pred HHHhhccccc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHH
Q 000505 913 WIAWATDEKR----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1458)
Q Consensus 913 wl~~~~~~~~----~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~iln 988 (1458)
|+++|.+... ..+...|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 9999986321 122456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 000505 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1458)
Q Consensus 989 R~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~ 1068 (1458)
||++|++.+|..+|..+..++..++.+++.++++++.+|.++++++|+++++++++++|.+++|+++|++.++++|+++|
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~ 1146 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSH 1146 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999888988888888888888999999999999999999999999999
Q ss_pred HHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHH
Q 000505 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLA 1148 (1458)
Q Consensus 1069 ~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 1148 (1458)
+.|+++|+.|||+|++|++|.+++.+..|.++++.+.....++|+..++++++.++++++..+.+ ...+.+++|.+|++
T Consensus 1147 ~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~ 1225 (1522)
T TIGR00957 1147 FNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLS 1225 (1522)
T ss_pred HHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765554444333 33567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeee
Q 000505 1149 ATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228 (1458)
Q Consensus 1149 l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~i 1228 (1458)
++|++.+...+.++++.+.++|+.++|+||+.+|.+.|+|.+...+...++++||..|.|+|+||+|+|+++.++||+|+
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~i 1305 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccce
Confidence 99999999999999999999999999999999999988876533334456678999999999999999988777899999
Q ss_pred eEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCC
Q 000505 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ 1308 (1458)
Q Consensus 1229 s~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~ 1308 (1458)
||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+||||+||||+++
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 000505 1309 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388 (1458)
Q Consensus 1309 ~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~ 1388 (1458)
++|+|||+||++|+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|+
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1389 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1389 ~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
+.+++||||+||||++|+++||||+|||+|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1466 ~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1466 TQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999986 69999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-199 Score=2015.93 Aligned_cols=1234 Identities=27% Similarity=0.467 Sum_probs=1081.4
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhc---cCCCChHHHHHHHHHHHH
Q 000505 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1458)
Q Consensus 201 ~~p~~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (1458)
.+||++||+|||++|||+||++++||+++|+.+|||+|+++|+++.++++|++.|+++. .++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998753 245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1458)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~I 357 (1458)
++.++++++.+++.+++|++++.+++|++.++. .....||+++++++++.++++++.++++|...++|+++|++|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999964332 2222389999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCC---CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000505 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1458)
Q Consensus 358 y~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~ 434 (1458)
|+|+|+++..+. ++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++| +++++|++++++++|++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999986544 789999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1458)
Q Consensus 435 ~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~ 514 (1458)
+++.+.++|+++|+++|+|++.++|+|+|||+||+|+||+.|.++|+++|++|++.+++..+..+...++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000505 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1458)
Q Consensus 515 ~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1458)
++|++|.+.++ ++++++||++++|++++.|+. .+|..+..+.++++|++||++||..+|..+... ......+++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceEE
Confidence 99999988754 789999999999999999985 799999999999999999999998877322111 111236999
Q ss_pred eeeEEEeCCcc--------cc------cC------------CCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCC
Q 000505 594 EAGEYAWDARE--------EN------FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 594 ~~~~fsw~~~~--------~~------~~------------~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~ 646 (1458)
+|++|+|+... .. .+ ...+.|+| |+++++|++++|+|||||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999996420 00 00 02467999 999999999999999999999999999999
Q ss_pred ccCCCCcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 647 ~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
++|++|++ .++|++|||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||.|.+|++|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999997 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhh
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l 806 (1458)
|||+||||+|++|++|||||||||||+++++++++.|+.+.++++|+|+|||++++++.||+|++|++|+|.+.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888887789999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHhh---h----h-------------cc----------CC-----CCCCC--Cc--------------
Q 000505 807 IADQNSELVRQMKAHR---K----S-------------LD----------QV-----NPPQE--DK-------------- 835 (1458)
Q Consensus 807 ~~~~~~~~~~~~~~~~---~----~-------------~~----------~~-----~~~~~--~~-------------- 835 (1458)
.+ .+..+........ + . .. .. .+..+ ..
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 86 4444444332100 0 0 00 00 00000 00
Q ss_pred ---------------c-c--ccCcc--------C-------ccchh---------------------h-----h-c----
Q 000505 836 ---------------C-L--SRVPC--------Q-------MSQIT---------------------E-----E-R---- 851 (1458)
Q Consensus 836 ---------------~-~--~~~~~--------~-------~~~~~---------------------~-----~-~---- 851 (1458)
. . ...+. . ..... . . +
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 0 00000 0 00000 0 0 0
Q ss_pred --ccC-------------------C-CCC------------CCCCCCCccchhhcCcchHHHHHHHHHHhhhhHHHHHHH
Q 000505 852 --FAR-------------------P-ISC------------GEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1458)
Q Consensus 852 --~~~-------------------~-~~~------------~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~ 897 (1458)
..+ . ... .......++|+++.|.++|++|+.|+++.+++.++.+++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 000 0 000 000112445677889999999999999886656655656
Q ss_pred HHHHHHHHHHhhhhhHHHhhcccc--------cc------------c-ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 898 LCQVLFQALQMGSNYWIAWATDEK--------RK------------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1458)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~~--------~~------------~-~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~ 955 (1458)
++.++.+++..++++|+.+|.... +. . ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999998775311 00 0 11122 45555666556677888999999999
Q ss_pred HHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000505 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1458)
Q Consensus 956 ~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p 1035 (1458)
.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 000505 1036 ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1115 (1458)
Q Consensus 1036 ~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1115 (1458)
+++++++++++|.+++|++++++..+++|+++|+.|++.|+.|||+|+++++|.+++.+..|.+++.++.....++|+..
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccC-
Q 000505 1116 RINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK- 1194 (1458)
Q Consensus 1116 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~- 1194 (1458)
++++++.+.+..++++.+. ...+++|.+|++++|++.+...+.++++.+.++|+.+.|+||+.+|.+.|+|.+...+
T Consensus 1114 ~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 9998876654443333222 2235678899999999999999999999999999999999999999998877542111
Q ss_pred -------------CCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC
Q 000505 1195 -------------NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1195 -------------~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p 1261 (1458)
...+|+.||..|.|+|+||+++|+++.++||+|+||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 123456799999999999999999877899999999999999999999999999999999999998
Q ss_pred CCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCC
Q 000505 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341 (1458)
Q Consensus 1262 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~ 1341 (1458)
++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||+|+|+
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEE
Q 000505 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1421 (1458)
Q Consensus 1342 G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~iv 1421 (1458)
|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+||++|+|+
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHHHHhh
Q 000505 1422 EYDSPRQLLEDNSSSFSKLVAEFLRR 1447 (1458)
Q Consensus 1422 E~g~p~~Ll~~~~s~F~~l~~~~~~~ 1447 (1458)
|+|+|++|++ ++|.|++|+++....
T Consensus 1431 E~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1431 QYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 9999999996 589999999987653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-189 Score=1920.98 Aligned_cols=1242 Identities=29% Similarity=0.479 Sum_probs=1078.1
Q ss_pred CCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHH----------HHhhcc---------
Q 000505 200 NISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEES----------LRKQKT--------- 260 (1458)
Q Consensus 200 ~~~p~~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~----------w~~~~~--------- 260 (1458)
.+.||++||||.++++.|++|++.+..|..|+.+|+|+...+.++-++..++.+. |+-...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 4579999999999999999999999999999999999999999986665554433 321000
Q ss_pred --------------------------------C-----------------------------------------------
Q 000505 261 --------------------------------D----------------------------------------------- 261 (1458)
Q Consensus 261 --------------------------------~----------------------------------------------- 261 (1458)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred -------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000505 262 -------------ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK 328 (1458)
Q Consensus 262 -------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~ 328 (1458)
..+|+|+++++||+.+++.++++++.+++.+++|++++.+++|+++++. .+..|++++++++++.
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~~ 295 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLTQ 295 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHH
Confidence 0379999999999999999999999999999999999999999976543 3334888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-----CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 329 TVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVF 403 (1458)
Q Consensus 329 ~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~-----~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~ 403 (1458)
++++++.++|+|...+.|+++|++|.+.||+|+++++..+. ++|+|+|+|++|++++.+++.++|.+|.+|++++
T Consensus 296 ~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li 375 (1560)
T PTZ00243 296 LIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLL 375 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987532 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH
Q 000505 404 LALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483 (1458)
Q Consensus 404 ~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~ 483 (1458)
+++++||..+| +++++|++++++++|++.++++++.++++++|+++|+|++.++|+++|||+||+||||+.|.++|++.
T Consensus 376 ~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~ 454 (1560)
T PTZ00243 376 LSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDK 454 (1560)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSL 563 (1458)
Q Consensus 484 R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~ 563 (1458)
|++|++.+++..+..++..++.+++|.++.+++|++|++.|++||++.+||++++|++++.|+.++|..++.+.++++|+
T Consensus 455 R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~ 534 (1560)
T PTZ00243 455 RARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSI 534 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC-CCCC----CC-----CCCC------------------------------------------------
Q 000505 564 YRIQEFIKEDNQ-KKPI----TE-----PTSK------------------------------------------------ 585 (1458)
Q Consensus 564 ~RI~~fL~~~e~-~~~~----~~-----~~~~------------------------------------------------ 585 (1458)
+||++||..+|. .+.. +. ....
T Consensus 535 ~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (1560)
T PTZ00243 535 KRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTK 614 (1560)
T ss_pred HHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 999999987661 1000 00 0000
Q ss_pred -CCCccEEEeeeEEEeCCccc--------------------c-----------c-CCCcccccC-cEEeeCCcEEEEEcc
Q 000505 586 -ASDVAIDIEAGEYAWDAREE--------------------N-----------F-KKPTIKLTD-KMKIMKGSKVAVCGS 631 (1458)
Q Consensus 586 -~~~~~I~i~~~~fsw~~~~~--------------------~-----------~-~~~~~~L~~-~l~i~~G~~~~ivG~ 631 (1458)
.....+.++|++|+|+.... . + ..+.+.|+| ||++++|++++|+||
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~ 694 (1560)
T PTZ00243 615 RHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGA 694 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECC
Confidence 00123556666666642110 0 0 012457999 999999999999999
Q ss_pred CCCChhHHHHHHhCCccCCCCcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCc
Q 000505 632 VGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711 (1458)
Q Consensus 632 ~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~ 711 (1458)
|||||||||++|+|+++|++|++ .+++.+|||+|+||++++||+|||.|+.++++++|++++++|++++|++.+|+|+.
T Consensus 695 nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~ 773 (1560)
T PTZ00243 695 TGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLE 773 (1560)
T ss_pred CCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccch
Confidence 99999999999999999999997 78899999999999999999999999998888999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEE
Q 000505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1458)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~ 791 (1458)
|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+.++++|+|+|||++++++.||+|++
T Consensus 774 t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~ 853 (1560)
T PTZ00243 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVA 853 (1560)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999888777789999999999999999999999
Q ss_pred EeCCeEEEcccchhhhhhcchHHHHHHHHhhhhcc--CCCCCCCC-ccc--ccCccCccc--hhhhcc--cC--CCCCCC
Q 000505 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD--QVNPPQED-KCL--SRVPCQMSQ--ITEERF--AR--PISCGE 860 (1458)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~~~~~~~--~~~~~~--~~--~~~~~~ 860 (1458)
|++|++.+.|+++++.+ .+ .+..+........+ ......+. ... ...+..... ..+... .. ......
T Consensus 854 l~~G~i~~~G~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1560)
T PTZ00243 854 LGDGRVEFSGSSADFMR-TS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAA 931 (1560)
T ss_pred EECCEEEEecCHHHHHh-Ch-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999986 32 34444332111100 00000000 000 000000000 000000 00 000111
Q ss_pred CCCCCccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHH
Q 000505 861 FSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGS 940 (1458)
Q Consensus 861 ~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~ 940 (1458)
..++.++|+++.|.++|++|+.|++..++...+.+++++.++.+++..++++|+++|++.....+...|+++|+++.++.
T Consensus 932 ~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 932 AGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLG 1011 (1560)
T ss_pred cchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHH
Confidence 23455677888999999999999999876665555555666778888899999999886443344567888999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000505 941 SFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020 (1458)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~ 1020 (1458)
.++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Q 000505 1021 LMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100 (1458)
Q Consensus 1021 v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~ 1100 (1458)
++++..|.++++++|+.++++.++++|.+..|+++|....+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999998888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000505 1101 CVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1177 (1458)
Q Consensus 1101 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sve 1177 (1458)
+..+.....++|+..+++++.+++.++++++.+ ....+..++|.++++++|+..+...+.++++.+.++|+.|.|+|
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776544433322 22344567899999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCCCcccc-----------------------CCCCCC---CCCCCCccEEEEeeeEEeCCCCCcceeeeeE
Q 000505 1178 RILQFTN-IPSEAPLVI-----------------------KNSRPS---PEWPSSGKIELENLLVQYNPTLPMVLKGITC 1230 (1458)
Q Consensus 1178 Ri~~~~~-~~~E~~~~~-----------------------~~~~~~---~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~ 1230 (1458)
|+.+|.+ .|+|+.... +...++ +.||..|.|+|+||+|+|+++.|+||+||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 9999996 444421100 011122 2355779999999999999887889999999
Q ss_pred EeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCC
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS 1310 (1458)
Q Consensus 1231 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~s 1310 (1458)
+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s 1411 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS 1411 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 000505 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK-KRILVLDEATASIDTATDNVIQQTIRE 1389 (1458)
Q Consensus 1311 deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~-~~ILlLDEaTsslD~~Td~~Iq~~I~~ 1389 (1458)
|+|||+||++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||++||+.||++|++
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred hcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000505 1390 ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1447 (1458)
Q Consensus 1390 ~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~ 1447 (1458)
.+++||||+||||++|+.+||+|+||++|+|+|+|+|+||+++++|.|++|+++....
T Consensus 1492 ~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1492 AFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred HCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999999999999999999999999999999999999988889999999886543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-141 Score=1336.92 Aligned_cols=1080 Identities=22% Similarity=0.272 Sum_probs=825.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 000505 333 LTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALV 407 (1458)
Q Consensus 333 l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~~-----~~~~~w~~plqi~~al~ 407 (1458)
+...+|.+...|...|+|.....+|.|+-....... ++|++++-|+.|+++|.|++. ++|.+-.. +.++.
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~f----i~g~i 164 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATF----IAGFV 164 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 345678899999999999999999999877654443 449999999999999999864 33433322 22222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHH
Q 000505 408 ILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIE 487 (1458)
Q Consensus 408 lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~E 487 (1458)
+-+ ..+|..+++.+.+..++......+++.+.+.-.+.+++--+--....|.+.+||+|-.++-|+...++-.+.
T Consensus 165 i~F-~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~---- 239 (1228)
T KOG0055|consen 165 IGF-YYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKA---- 239 (1228)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHH----
Confidence 222 227788898888888888888889998888888888887888899999999999999999999866665443
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 488 RDSLKKYLYTCSAIAFL------FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561 (1458)
Q Consensus 488 l~~l~k~~~~~a~~~~~------~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~v 561 (1458)
++..+|+...+++...+ +++-......++||..++..+..+++.+|+.+...-+-...|.+....++.+.+|++
T Consensus 240 L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~ 319 (1228)
T KOG0055|consen 240 LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARA 319 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhcccc
Confidence 33333333333322211 112222344567787777778899999999987777777888888889999999999
Q ss_pred HHHHHHHHhcccCCCCC--CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhH
Q 000505 562 SLYRIQEFIKEDNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSS 638 (1458)
Q Consensus 562 S~~RI~~fL~~~e~~~~--~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKST 638 (1458)
+..+|.+-++...+.+. .+..........|+++|+.|+||.+ ++.+.|++ ||.|++|+.+|+|||+||||||
T Consensus 320 aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST 394 (1228)
T KOG0055|consen 320 AAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKST 394 (1228)
T ss_pred chHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHH
Confidence 99999999987652222 1222233356789999999999987 56789999 9999999999999999999999
Q ss_pred HHHHHhCCccCCCCcEEEECC-------------EEEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHH
Q 000505 639 LLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIE 704 (1458)
Q Consensus 639 Ll~~llG~~~~~~G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~ 704 (1458)
++++|.|.++|++|++ .++| ++|.|.|+|.+|++||+|||.||+|- ..++..++.+.....+.+.
T Consensus 395 ~i~LL~RfydP~~G~V-~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 395 LIQLLARFYDPTSGEV-LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred HHHHHHHhcCCCCceE-EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 9999999999999997 8887 47999999999999999999999964 4566666666666777899
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhc
Q 000505 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1458)
Q Consensus 705 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 784 (1458)
.+|+|.+|.+||+|..|||||||||||||||.+||+||||||||||||+++ +++.++.++...+|+|.|+|+|+++.++
T Consensus 474 ~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIr 552 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIR 552 (1228)
T ss_pred hhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhh
Confidence 999999999999999999999999999999999999999999999999997 5666888999999999999999999999
Q ss_pred cCCEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCC-CCCCCccc----ccCccCccchhhhc---cc---
Q 000505 785 AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDKCL----SRVPCQMSQITEER---FA--- 853 (1458)
Q Consensus 785 ~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~---~~--- 853 (1458)
+||+|++|++|+|++.|+++||++ .++.+.++++.++......+ +.+++... +...........+. ..
T Consensus 553 naD~I~v~~~G~IvE~G~h~ELi~-~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~ 631 (1228)
T KOG0055|consen 553 NADKIAVMEEGKIVEQGTHDELIA-LGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLS 631 (1228)
T ss_pred ccCEEEEEECCEEEEecCHHHHHh-ccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccc
Confidence 999999999999999999999999 45888898887644332111 00000000 00000000000000 00
Q ss_pred -CCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhhhHHHh----hc-cccc--cc
Q 000505 854 -RPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYK-GALVPVILLCQVLFQALQMGSNYWIAW----AT-DEKR--KV 924 (1458)
Q Consensus 854 -~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wl~~----~~-~~~~--~~ 924 (1458)
++..+...... .+++ -.++ ++.-++.... |+++.+-+++.++..+..-...+.+++ .. .+.. ..
T Consensus 632 ~~~~~e~~~~~~-~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~ 704 (1228)
T KOG0055|consen 632 VKPEGEDPEEPV-SEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKR 704 (1228)
T ss_pred cccccccccccc-cccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 00000000000 1111 1222 3333333322 223222233333322222222222221 11 1111 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccc--cChhhHHHHHhhhhhHHhhhhH
Q 000505 925 SREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIP 1002 (1458)
Q Consensus 925 ~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~--tp~G~ilnR~s~D~~~id~~l~ 1002 (1458)
....|..+|+++++++.++.++..+++.+.+.+..+++|.++++++++.++.|||. +. |++.+|+++|...+...+.
T Consensus 705 ~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~ 783 (1228)
T KOG0055|consen 705 EVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVG 783 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHH
Confidence 23348889999999999999999999999999999999999999999999999996 55 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhh
Q 000505 1003 YRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1082 (1458)
Q Consensus 1003 ~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf 1082 (1458)
..+..+++++..++..+++.++++|.+.++++.+.++.+.....+.+......+..............|++++++||++|
T Consensus 784 ~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 784 DRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999988776555555444333333333333334444445567789999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH---HHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHH
Q 000505 1083 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF---FLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVL 1158 (1458)
Q Consensus 1083 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~---~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~ 1158 (1458)
+.|++|++.+.+.++...+..+... .|-++...+-..+++ +++..+ ..+..++..++..+-..+.-...-...
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~ 940 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMA 940 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999998888776655432 233333222222222 222222 233445556665443332222222223
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcE
Q 000505 1159 QAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKK 1237 (1458)
Q Consensus 1159 ~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Gek 1237 (1458)
.........+.-....|+.++.+..+-+++-+...+... ..-+.+|+|+|+||+|+|+.. ..+||+|+|++|++||.
T Consensus 941 ~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~--~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 941 LGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGG--KLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--ccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCE
Confidence 344455566777888899999999886653221111110 111358999999999999632 13699999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHH
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWE 1316 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~ 1316 (1458)
+|+||||||||||++.+|.|+|+|.+|.|.|||.||++++++.||++|++|.|||+||++||||||... .+.+.+||.+
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~ 1098 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIE 1098 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 4579999999
Q ss_pred HHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEE
Q 000505 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTV 1396 (1458)
Q Consensus 1317 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TV 1396 (1458)
|++.++.++||.++|+||||.|||+|.+||||||||+|||||++||||||+||||||+||.++|+.+|++|++...++|+
T Consensus 1099 Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~ 1178 (1228)
T KOG0055|consen 1099 AAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTT 1178 (1228)
T ss_pred HHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1397 ITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1397 I~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
|+||||++||++||.|.|+++|+|+|.|+|++|++ ++|.|++|++..
T Consensus 1179 IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1179 IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecchhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhc
Confidence 99999999999999999999999999999999997 789999999854
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-130 Score=1328.55 Aligned_cols=1163 Identities=17% Similarity=0.170 Sum_probs=837.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1458)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1458)
+++...+.+++.++++.++.++..++..+.|+++..+++.+...+. .....+. +++..++..++...+.+...+
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~----~~~~~i~~~~~~~~~~~~~~~ 123 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFS----LVLIGIFQFILSFISSFCMDV 123 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567778888888888888888899999999986642221 1111111 222222222222223333444
Q ss_pred HHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000505 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1458)
Q Consensus 345 ~g~~iR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1458)
++.++-..+...+|+|.++++. .....|++.|-++.|++.+.+++. .+..+...++.++.++++++. +.|..+++
T Consensus 124 ~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv 202 (1466)
T PTZ00265 124 VTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 4555555555555666665542 123779999999999999988764 355555566666666655553 45566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1458)
Q Consensus 421 gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~ 500 (1458)
.++++.+++.+...+.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....++
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888888888888888899999999999999999999999999888876544444433333333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000505 501 IAFLFWAS--PTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI 570 (1458)
Q Consensus 501 ~~~~~~~~--p~~v~~~tF~~~~~~~~--------~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL 570 (1458)
...+.... -..+.+++||.+.+..+ .++++.+++.+....+...++..+...+..+.++++|.+||.+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 12234556777766643 588888887765554445555666667889999999999999999
Q ss_pred cccCCCCC-CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc
Q 000505 571 KEDNQKKP-ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 571 ~~~e~~~~-~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~ 648 (1458)
+.++..+. ....... ....|+++|++|+|+.. +..+.|++ ||++++||+++|+||||||||||+++|+|.++
T Consensus 363 ~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 436 (1466)
T PTZ00265 363 NRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436 (1466)
T ss_pred cCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 87552111 1111111 11369999999999854 23578999 99999999999999999999999999999999
Q ss_pred CCCCcEEEEC-C-------------EEEEEcCCCCCCCCcHHHHHhcCCC------------------------------
Q 000505 649 RISGAAIKVH-G-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------ 684 (1458)
Q Consensus 649 ~~~G~~i~~~-g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~------------------------------ 684 (1458)
|++|++ .++ | .++||+|+|.++++||+|||.+|..
T Consensus 437 p~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 437 PTEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred CCCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999997 773 3 3699999999999999999999742
Q ss_pred ----------------------------CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 000505 685 ----------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1458)
Q Consensus 685 ----------------------------~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1458)
.++++..++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 1234556667777888889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEeCC-------------------
Q 000505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG------------------- 795 (1458)
Q Consensus 737 ~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G------------------- 795 (1458)
++|+|+|||||||+||+++...+.+ .+..+. +++|+|+|||+++.+..||+|++|++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 9999999999999999999877765 555554 489999999999999889999999986
Q ss_pred ----------------------------eEEEcccchhhhhhcchHHHHHHHHhhhhccCCC-C-CCCCc----cc-c-c
Q 000505 796 ----------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P-PQEDK----CL-S-R 839 (1458)
Q Consensus 796 ----------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~-~-~ 839 (1458)
+|+++|+++|+++..++.+..++..+........ . .+... .. . .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDS 754 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccc
Confidence 5999999999997456777777765432211100 0 00000 00 0 0
Q ss_pred Ccc---Cc-cch--hhhcc-c--CCCCC--CCCCCCCcc-c-----h----hhcCcchHHHHHHHHHHhhhhHHHHHHHH
Q 000505 840 VPC---QM-SQI--TEERF-A--RPISC--GEFSGRSQD-E-----D----TELGRVKWTVYSAFITLVYKGALVPVILL 898 (1458)
Q Consensus 840 ~~~---~~-~~~--~~~~~-~--~~~~~--~~~~~~~~~-e-----~----~~~g~v~~~~y~~y~~~~~~~~~~~~~~~ 898 (1458)
.+. .. ... .+... . ..... ....+...+ + + .......+..++.++.......+ +.++
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 832 (1466)
T PTZ00265 755 ERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIAL 832 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHH
Confidence 000 00 000 00000 0 00000 000000000 0 0 00001112223334333222211 1222
Q ss_pred HHHHHHHHHhhhhhHHHhhccc-----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000505 899 CQVLFQALQMGSNYWIAWATDE-----KRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1458)
Q Consensus 899 ~~~~~~~~~~~~~~wl~~~~~~-----~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~a 973 (1458)
+.++..++....++.++.+.+. ........+..++++++++..++.+++.++....+.+...+++..+++++++.
T Consensus 833 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~ 912 (1466)
T PTZ00265 833 SILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ 912 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223333333333333333211 00111234556677777778888899999999999999999999999999999
Q ss_pred ccccccc--cChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Q 000505 974 PISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT-- 1049 (1458)
Q Consensus 974 p~~ffd~--tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~-- 1049 (1458)
|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|+.++.........+
T Consensus 913 ~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 992 (1466)
T PTZ00265 913 EISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLT 992 (1466)
T ss_pred CHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 889999999999999999999988888999999999999999999998887766654433222111111
Q ss_pred HHHHHHHH-------------HhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 000505 1050 TARELARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116 (1458)
Q Consensus 1050 ~sr~l~rl-------------~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 1116 (1458)
..++.++. +.+..+.....+.|+++|+.|||+|+.|+++.+++.+..+...+..........++...
T Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1466)
T PTZ00265 993 ANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGF 1072 (1466)
T ss_pred HHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121111 12234566889999999999999999999999999998888776665554444444444
Q ss_pred HHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCC
Q 000505 1117 INLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195 (1458)
Q Consensus 1117 l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~ 1195 (1458)
.+.+..+..+++.++ ...+..+.++.|.+..++.+.+........+...+.+++....+.+|+.++++.+++.+.....
T Consensus 1073 ~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~ 1152 (1466)
T PTZ00265 1073 SQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNG 1152 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCc
Confidence 444433333322222 3334467777776555444443333345556777888999999999999999876543211111
Q ss_pred CCC-CCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC------------
Q 000505 1196 SRP-SPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP------------ 1261 (1458)
Q Consensus 1196 ~~~-~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p------------ 1261 (1458)
..+ +...+..|.|+|+||+|+|+.+ ..+||+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1153 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1153 GIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred ccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 110 0112346889999999999742 23699999999999999999999999999999999999999
Q ss_pred ------------------------------------------CCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccH
Q 000505 1262 ------------------------------------------SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299 (1458)
Q Consensus 1262 ------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1299 (1458)
++|+|+|||+||+++++++||++|+||||||+||+|||
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTI 1312 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSI 1312 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccH
Confidence 69999999999999999999999999999999999999
Q ss_pred HHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 000505 1300 RTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378 (1458)
Q Consensus 1300 R~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~ 1378 (1458)
||||..+ ++++|+||++|++.+++++||.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++
T Consensus 1313 reNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1313 YENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392 (1466)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 9999887 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeC----CEE-EEecChhHHhhcCCChHHHHHHHH
Q 000505 1379 TDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDE----GKV-LEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1379 Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~----G~i-vE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
|++.|+++|++.. +++|+|+||||++++.+||+|+||++ |++ +|.|+|+||+++++|.|++|++..
T Consensus 1393 sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1393 SEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999873 68999999999999999999999999 995 599999999976689999998753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-88 Score=816.38 Aligned_cols=567 Identities=23% Similarity=0.335 Sum_probs=486.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcc-----cccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 000505 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATD-----EKRKVSREQLIGVFIFLSGGSSFFILGRAVL 950 (1458)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~-----~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~ 950 (1458)
.++..+.|.+..+++... ..++.++.....+..++++...++ ++..........+..++.++++++.++|.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~--a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVA--AFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHH--HHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655433322 222333444445666665543322 1111122334556667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000505 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVF 1030 (1458)
Q Consensus 951 ~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~ 1030 (1458)
+.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...+.+.++.++.++.|+..+|.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000505 1031 PLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110 (1458)
Q Consensus 1031 ~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1110 (1458)
++.+..+++...+.++|.+..|++.+...++-+...+...|.+++++|+|+|+.|++..++|.+.++...+.........
T Consensus 292 lv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~ 371 (716)
T KOG0058|consen 292 LVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAY 371 (716)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888888889999999999999999999999999999999999999999999999999888887766654444343
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Q 000505 1111 EWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1189 (1458)
Q Consensus 1111 ~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1189 (1458)
-.+....++.+++....++++ ..+...+.+++|..--.+.|...+...+.++...+.++.+.+.|.+|+.||++.++.-
T Consensus 372 ~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i 451 (716)
T KOG0058|consen 372 GIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRI 451 (716)
T ss_pred hHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCC
Confidence 334444455555444443333 3445677889999999999999999999999999999999999999999999876554
Q ss_pred ccccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000505 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1458)
Q Consensus 1190 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1268 (1458)
+.. ....|. .-+|.|+|+||+|.|+.. ..+||||+||+|+|||.||+||||||||||++++|.|+|+|++|+|++
T Consensus 452 ~~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 452 PLT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 322 111222 468999999999999643 236999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000505 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1269 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
||+||++++.+.||++||+|.|||+||+|||||||... ...+||||.+|+++++.++||.++|+|+||.|||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999764 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChh
Q 000505 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1348 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~ 1427 (1458)
||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+||||++||+.+|+|+|+++|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHHHHHHhhc
Q 000505 1428 QLLEDNSSSFSKLVAEFLRRT 1448 (1458)
Q Consensus 1428 ~Ll~~~~s~F~~l~~~~~~~~ 1448 (1458)
||+++++|.|++|+++.....
T Consensus 688 eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHhhCcccHHHHHHHHhcccC
Confidence 999999999999999876443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-81 Score=788.91 Aligned_cols=547 Identities=26% Similarity=0.372 Sum_probs=488.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhcccc-cccc--cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 893 VPVILLCQVLFQALQMGSNYWIAWATDEK-RKVS--REQ-LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMIT 968 (1458)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~~~-~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 968 (1458)
+.-+++..++.+++.+++++...+..|.- +..+ ... ....+++.++...++.++|++++...+.+....+-.++++
T Consensus 156 l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~ 235 (709)
T COG2274 156 LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFR 235 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33455566777888888888888777532 2222 222 2233445566677889999999999999999999999999
Q ss_pred HHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000505 969 SVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYI 1048 (1458)
Q Consensus 969 ~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~ 1048 (1458)
++++.|++||++.++|++++|++ |++.|...+...+...+..++.++..+++|++++|+++++.+..++++..+..+..
T Consensus 236 hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~ 314 (709)
T COG2274 236 HLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQ 314 (709)
T ss_pred HHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 88888889999999999999999999999999999999998888888887777777
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 000505 1049 TTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV 1128 (1458)
Q Consensus 1049 ~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1128 (1458)
+..|+..+...+..+...++..|++.|+.|||+.+.|.++..++.+..+++.+..+.......|......++..+..+.+
T Consensus 315 ~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~i 394 (709)
T COG2274 315 PLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394 (709)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888899999999999999999999999999999999999999999998888888888888887766666
Q ss_pred HHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCcc
Q 000505 1129 LII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK 1207 (1458)
Q Consensus 1129 ~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1207 (1458)
+++ ......+.++.|..-...+..-.++..+..++..+.+++....+.+|+.+..+.|+|.+. +..+...|+..|+
T Consensus 395 L~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~ 471 (709)
T COG2274 395 LWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGE 471 (709)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCce
Confidence 555 334456777887777777777788899999999999999999999999999999988642 2224455677899
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++++|++|++
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
||||++||+||||||+...+ +.+|||+++|++.+|++++|.++|.||||+|+|+|.|||||||||++||||+++||+||
T Consensus 552 V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL 631 (709)
T COG2274 552 VLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL 631 (709)
T ss_pred EcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999998764 57889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
+||||||+||++||+.|.+.|.+...+||+|+||||++++++||||+|||+|+|+|+|+|+||++. +|.|+++++.+
T Consensus 632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 89999998753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-78 Score=765.74 Aligned_cols=543 Identities=27% Similarity=0.380 Sum_probs=456.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000505 896 ILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1458)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~a 973 (1458)
.+++.++...+....++++.+..+.-. ......+...++++.++..++.++..+...+.+.+....++.++++++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445556666667777665543221 111223344455555566667777777778888999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1458)
Q Consensus 974 p~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~ 1053 (1458)
|+++|+++++|++++|+++|++.++..+......+..+++.+++.+++++..+|.+.++++...+++.....++.+..++
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886666667888889999999999998888777777777777777766788
Q ss_pred HHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-H
Q 000505 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-L 1132 (1458)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~ 1132 (1458)
..+......+.+.+.+.|+++|..+||+|+.++...+++.+..+...+...........+.....++..+....+..+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999887777777766666554444444444333344333333322222 2
Q ss_pred HhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEe
Q 000505 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1458)
Q Consensus 1133 ~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~n 1212 (1458)
.....+.++.|.....+.|...+...+..+......++....+.||+.++.+.+++... ... +..+..|.|+|+|
T Consensus 259 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~ 333 (567)
T COG1132 259 FLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFEN 333 (567)
T ss_pred HHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEE
Confidence 22345567888888889999999999999999999999999999999999987554211 111 1345568899999
Q ss_pred eeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCC
Q 000505 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292 (1458)
Q Consensus 1213 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp 1292 (1458)
|+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.|||+||+++++.+||++|++|||||
T Consensus 334 vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 334 VSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred EEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 99999863 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHhcCcCCC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCc
Q 000505 1293 MLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371 (1458)
Q Consensus 1293 ~LF~gTIR~NLdp~~~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEa 1371 (1458)
+||+||||+||+++.+ ++|||+++|+++++++|+|.++|+||||.|||+|.+||||||||+|||||++|+|+|||||||
T Consensus 413 ~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEa 492 (567)
T COG1132 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA 492 (567)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 9999999999999865 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1372 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1372 TsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
||++|++||+.|++.+++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++|+++..
T Consensus 493 TSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 493 TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 9999999999999999988888999999999999999999999999999999999999986 899999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-76 Score=755.33 Aligned_cols=560 Identities=18% Similarity=0.221 Sum_probs=449.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc--cccc---cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1458)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1458)
+.++.|++..++.. .+.+++.++..++.+..++.+.+..+.- +..+ ...++..++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666543332 2334444555666666666666555321 1111 112233344445556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1458)
Q Consensus 953 ~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v 1032 (1458)
..+.+...+++.++++++++.|+++|++.++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000505 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1458)
Q Consensus 1033 ~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1458)
++..+++.+++..++.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666677777777777777788899999999999999999999999999999988888877766555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 000505 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA---------GLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183 (1458)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~ 1183 (1458)
......++..+...++.++......+.++.|.. -.++.+...+...+..+...+.++.....+.+|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332222211111111233333321 12223444556667777778888899999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC
Q 000505 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1458)
Q Consensus 1184 ~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1263 (1458)
+.|++.+.. ...+ ...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|++ |++
T Consensus 329 ~~~~~~~~~--~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Cccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 876543211 1111 111234679999999887654 56999999999999999999999999999999999999 999
Q ss_pred cEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1264 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
|+|.+||+|+++++.+++|++|+||||||+||+|||||||..+ ++++|||+++|+++|++++++.++|+|+||.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999999999999999999999999999999999999887 469999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE 1422 (1458)
.|||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHHHH
Q 000505 1423 YDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
.|+|+||+++ ++.|+++++.+.
T Consensus 564 ~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 564 QGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred cCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999974 689999987654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=765.18 Aligned_cols=552 Identities=22% Similarity=0.303 Sum_probs=459.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhccccc-ccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATI 954 (1458)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 954 (1458)
.++.|++..+. .+...+++.++...+.+..+++.....+.-. ..+ ....+..++++.++..++.+++..++...
T Consensus 151 ~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554322 2334444556666777777777765554211 111 11234445555666777888888999999
Q ss_pred HHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000505 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFL 1034 (1458)
Q Consensus 955 ~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~ 1034 (1458)
+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHh---H
Q 000505 1035 VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM---E 1111 (1458)
Q Consensus 1035 p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~---~ 1111 (1458)
..+++.+++.+++.+..+++.+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+......... .
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777788887788877778888889999999999999999999999999999888887766554433222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
|....+..+..+++.. +.......+.+++|.+...+.|...+...+..+...+.++.+...+.+|+.++.+.+++.+.
T Consensus 389 ~~~~~~~~~~~~~il~--~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLY--YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3332222222222111 11223446788999888888999999999999999999999999999999999987655321
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1270 (1458)
. .....++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 467 ~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 111123456889999999999753 35799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
+|+++++.+++|++|+||||||.+|+|||||||... ++.+||++++++++++++++++++|+|+||.+||+|.+|||||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999865 4688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
|||++||||++++|+|||||||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 999999999999999999999999999999999999 334578999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHH
Q 000505 1430 LEDNSSSFSKLV 1441 (1458)
Q Consensus 1430 l~~~~s~F~~l~ 1441 (1458)
+++ ++.|++|+
T Consensus 701 ~~~-~~~y~~lv 711 (711)
T TIGR00958 701 MED-QGCYKHLV 711 (711)
T ss_pred HhC-CCchHhcC
Confidence 975 67898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-75 Score=756.86 Aligned_cols=540 Identities=21% Similarity=0.260 Sum_probs=456.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhcccc-ccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 895 VILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1458)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~v 970 (1458)
.++++.++...+.+..++.+....+.- +..+. ..+...++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777666555321 11111 12234455555666778888999999999999999999999999
Q ss_pred ccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1458)
Q Consensus 971 l~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~ 1050 (1458)
++.|++||++.++|++++|++ |++.+...+...+...+..++..++.+++++.++|++.++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7888988888777777777777778888889999998887776666666666566666
Q ss_pred HHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000505 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1458)
Q Consensus 1051 sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~ 1130 (1458)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778899999999999999999999999999999999988888887777777776666655444333333
Q ss_pred H-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEE
Q 000505 1131 I-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1458)
Q Consensus 1131 ~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1209 (1458)
+ ......+.++.|.+-.+..+...+...+..+...+.++.....+.+|+.++.+.|+|.+. ...+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEE
Confidence 2 233346778888777777788888888888999999999999999999999987766431 1111 113457899
Q ss_pred EEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEc
Q 000505 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1458)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1289 (1458)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|+++++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999866678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1290 QDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1290 Qdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
|||.+|+|||||||..++.++|+++++|++.+++++++.++|+|+||.++|+|.|||||||||++||||++++|+||+||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 000505 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
||||+||++|++.|++.|++. ++|+|+||||++++..||+|+||++|+++|.|+|++|++ +++.|++|+++
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~-~~~~y~~l~~~ 684 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLARR 684 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh-CCcHHHHHHHh
Confidence 999999999999999999986 689999999999999999999999999999999999997 57899999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-75 Score=740.34 Aligned_cols=544 Identities=24% Similarity=0.357 Sum_probs=449.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhcccc-cccc--cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 896 ILLCQVLFQALQMGSNYWIAWATDEK-RKVS--REQL---IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1458)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~~~~---l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 969 (1458)
.+++.++...+....++++.+..+.. +..+ .... +.+++++.++..++.+++.+.....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777777665421 1111 1111 1223333445566677788888899999999999999999
Q ss_pred HccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1458)
Q Consensus 970 vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~ 1049 (1458)
++++|+++|+..+.|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.++++..+++.+.+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888889999998876655444444444455555
Q ss_pred HHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHH
Q 000505 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL-CLRINLLFNFAFFLV 1128 (1458)
Q Consensus 1050 ~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~ 1128 (1458)
..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677888999999999999999999999999988887776666555444333332 222333333222222
Q ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccE
Q 000505 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1458)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1208 (1458)
.++......+.++.|.......|...+...+..+...+.++++...+.+|+.++.+.+++++. .. ..++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 122112346778888888888888889999999999999999999999999999886654321 11 122345789
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+|+||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000505 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1458)
Q Consensus 1289 pQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlL 1368 (1458)
||||.+|+||||+||.++++++|++++++++++|++++++++|+||||.++|+|.+||||||||++||||++++|+||+|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000505 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1447 (1458)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~ 1447 (1458)
|||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||+++ ++.|++|++.....
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhhh
Confidence 9999999999999999999998889999999999999999999999999999999999999975 68999999876543
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-75 Score=757.33 Aligned_cols=559 Identities=21% Similarity=0.264 Sum_probs=467.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc-ccccc---chhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1458)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1458)
++.++.+++..++. +..++++.++..++.++.++++....+.. +.... ..+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGA--LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666644322 22334444555666666677766555321 11111 12233444455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1458)
Q Consensus 953 ~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v 1032 (1458)
..+.+...+++.++++++++.|++||++.++|++++|++.| ..+...+...+..++..++.+++.+++++.++|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56887888888888888888888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000505 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1458)
Q Consensus 1033 ~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1458)
.+.++++++++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777777778888999999999999999999999999999988888887777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
......++..+...++.++ ......+.++.|.+..+..+...+...+..+...+.++.....+.+|+.++.+.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6666665555443333332 233456788888888888888888888889999999999999999999999988776532
Q ss_pred ccCC--C-CCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000505 1192 VIKN--S-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1458)
Q Consensus 1192 ~~~~--~-~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1268 (1458)
.... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+++|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456889999999999876677999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000505 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1269 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
||+|+++++.+++|++++||||||.+|+|||||||..++ +++|++++++++++++++++.++|+|+||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChh
Q 000505 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1348 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~ 1427 (1458)
|||||++||||++++|+||+||||||+||++|++.|.+.|++ .++|+|+||||++++.+||||+||++|+++|.|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHH
Q 000505 1428 QLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1428 ~Ll~~~~s~F~~l~ 1441 (1458)
||++ +++.|++|+
T Consensus 697 ~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWA-VGGAYARLI 709 (710)
T ss_pred HHHH-cCCcHHHHh
Confidence 9997 478899886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-75 Score=755.95 Aligned_cols=558 Identities=21% Similarity=0.275 Sum_probs=460.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc-ccccc---chhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLL 951 (1458)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1458)
++..++.|++...+. +..++++.++..++.++.++++....+.. +.... ..+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666654332 23344455666677777788887666421 11111 1122233344455567778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...+.+...+++.++++++++.|++||++.++|++++|++ |...+...+...+...+..++.+++.+++++..+|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888887777766666677777777777888889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
+++..+++++.+...+.+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777888888888889999999999999999999999999999988888877776665544444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc
Q 000505 1112 WLCLRINLLFNFAFFLVL-IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP 1190 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1190 (1458)
+......++..+...++. +.......+.++.|.+..+..+...+...+..+...+.++.....+++|+.++.+.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 443333333322222222 1223334778888888888888888888888999999999999999999999998877653
Q ss_pred cccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000505 1191 LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1191 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1270 (1458)
.. ....+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||
T Consensus 460 ~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred cc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 21 1111233457889999999999744 5699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
+|+++++.+++|++++||||||.+|+|||||||..+ .+++|++++++++.+++++++.++|+||||.++|+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999876 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhH
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||||++||||++++|+||+||||||+||++|++.|++.|++. +++|+|+||||++++..||+|++|++|+++|.|+|++
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999974 7899999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 000505 1429 LLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1429 Ll~~~~s~F~~l~~ 1442 (1458)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9975 689999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-74 Score=731.08 Aligned_cols=542 Identities=21% Similarity=0.270 Sum_probs=460.3
Q ss_pred HHHHHHHHHHhhhhhHHHhhcccccccccc---h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000505 898 LCQVLFQALQMGSNYWIAWATDEKRKVSRE---Q-LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1458)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~---~-~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~a 973 (1458)
++.++...+.....++++...+.....+.. . +...++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444445555566666444311111111 1 122233345556677777878888889999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1458)
Q Consensus 974 p~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~ 1053 (1458)
|.++|++...|++++|+++|++.+...+...+..++..++.+++.+++++..+|+++++++..+++.+++..++.+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999998887777666666666666676677
Q ss_pred HHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-H
Q 000505 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-L 1132 (1458)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~ 1132 (1458)
..+......+...+++.|.++|+.+||+|+.++++.+++.+..+...+..........|.....+++..+...++.++ .
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788899999999999999999999999999999999998888887777777777776666665544333332 2
Q ss_pred HhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEe
Q 000505 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1458)
Q Consensus 1133 ~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~n 1212 (1458)
.....+.+++|...++.++...+...+..+...+.++.+...+.+|+.++.+.++|.+. ... ...|..+.|+++|
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~ 346 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRN 346 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEE
Confidence 33445788999988888888888889999999999999999999999999987655321 111 1123456899999
Q ss_pred eeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCC
Q 000505 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292 (1458)
Q Consensus 1213 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp 1292 (1458)
|+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||||
T Consensus 347 vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred EEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 99999876667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHhcCcC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000505 1293 MLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1458)
Q Consensus 1293 ~LF~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1370 (1458)
++|+||||+||... ++++|+++++++++++++++++++|+||||.+||+|.+||||||||++||||++++|+||+|||
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE 506 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_pred eeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999864 3489999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1371 ATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
|||+||++|++.|.+.|++..++||+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|++++.
T Consensus 507 ptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHh
Confidence 99999999999999999998889999999999999999999999999999999999999975 589999987653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=740.74 Aligned_cols=549 Identities=21% Similarity=0.251 Sum_probs=455.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc-cccccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSRE---QLIGVFIFLSGGSSFFILGRAVLLA 952 (1458)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~---~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1458)
+..++.+++..++. +..++++.++..++..+.++.+....+.. +..+.. .+...++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPL--YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666543332 23344445566666777777776655421 111111 1222333344556677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1458)
Q Consensus 953 ~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v 1032 (1458)
..+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.+++++.++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999988887777777777888888888999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000505 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1458)
Q Consensus 1033 ~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1458)
.+..+++++.+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777777777788889999999999999999999999999999998888877777666555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
......++..+...++.++ ......+.++.|..-.+.++...+...+..+...+.++.....+.+|+.++.+.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 5544444443332222222 233446788888888888888888888889999999999999999999999988776432
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCe
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~ 1271 (1458)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112345789999999999766667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
|+++++++++|++++||||||++|+|||||||...+ +++|+|++++++++++++++.++|+|+||.++|+|.|||||||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999999775 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||++||||++++|+||+||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred hc
Q 000505 1431 ED 1432 (1458)
Q Consensus 1431 ~~ 1432 (1458)
++
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 65
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=722.02 Aligned_cols=555 Identities=20% Similarity=0.246 Sum_probs=446.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc---ccc---ccch--hHHHHHHHHHHHHHHHHHHHHHH
Q 000505 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKV---SREQ--LIGVFIFLSGGSSFFILGRAVLL 951 (1458)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~---~~~~--~l~vy~~l~~~~~~~~~~~~~~~ 951 (1458)
++.|++...+. +.+.+++.++..++.++.++.+.|..+.. ... .... .+..+.+++++..++.++..++.
T Consensus 7 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 7 FLKLYKRHWFM--LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543322 22333444555556666666666655421 110 0011 11223334455666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...+.+....++.++++++++.|++||++.++|++++|+++|++.++..+...+..++.+++.+++.+++++..+|++.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999987
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000505 1032 LFLVILGIS-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110 (1458)
Q Consensus 1032 v~~p~~~l~-~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1110 (1458)
+++..+++. +.+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..++..+.........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (574)
T PRK11160 165 TLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLT 244 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765444433 3345566666677777777888899999999999999999999999999999999888888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Q 000505 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1189 (1458)
Q Consensus 1111 ~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~-l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1189 (1458)
.+.....+++..+...++.++......+..+.|....++.|. +.....+..+...+.++.....+.+|+.++.+.|+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 245 GLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 666555565555444333333222224555555544444443 2233344555666777888899999999999876553
Q ss_pred ccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEc
Q 000505 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269 (1458)
Q Consensus 1190 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1269 (1458)
+.. ...+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+|
T Consensus 325 ~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 325 TFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 211 1111 113457899999999997654579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1270 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
|+|+++++.+++|+++++|||||.+|+|||||||... ++.+|++++++++++++++++.+ |+||||.+||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999865 36899999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhH
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||||++||||++++|+||+||||||++|++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 000505 1429 LLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1429 Ll~~~~s~F~~l~~ 1442 (1458)
|++ +++.|++|++
T Consensus 560 l~~-~~g~y~~l~~ 572 (574)
T PRK11160 560 LLA-QQGRYYQLKQ 572 (574)
T ss_pred HHh-cCcHHHHHHh
Confidence 996 4789999876
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=717.50 Aligned_cols=543 Identities=22% Similarity=0.307 Sum_probs=470.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhcccccc---cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000505 896 ILLCQVLFQALQMGSNYWIAWATDEKRK---VS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1458)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~---~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 971 (1458)
.+++.++..++....+++++...+.... .. ...+...++++.++..++.+++.++....+.+....++..++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666543321111 11 1122334556666677788889999999999999999999999999
Q ss_pred cCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1458)
Q Consensus 972 ~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~s 1051 (1458)
+.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++.+.++.+++..++.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000505 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1458)
Q Consensus 1052 r~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1131 (1458)
++..+......++..+.+.|+++|+.+||+++.++++.+++.+..++..+..........+.....+++..+...++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999998888877777777777666666655443333322
Q ss_pred -HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEE
Q 000505 1132 -LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1458)
Q Consensus 1132 -~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1458)
......+.+++|.+..+.++...+...+..+...+.++.+...+.+|+.++.+.++|.+. ...+.+ +..+.|++
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~ 333 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEF 333 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEE
Confidence 333456788999988888898899999999999999999999999999999987655321 111111 24568999
Q ss_pred EeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEcc
Q 000505 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1458)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1458)
+||+|+|+++.+++|+|+||+|++||+|+|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++|+||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHhcCcCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000505 1291 DPMLFQGTVRTNLDPLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1458)
Q Consensus 1291 dp~LF~gTIR~NLdp~~--~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlL 1368 (1458)
||.+|+||||+||..+. +.+|++++++++++++++++.++|+||||.++|+|.+||||||||+|||||++++|+||+|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998763 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++++ ++.|++++.+.
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999999998899999999999999999999999999999999999999975 67899887754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-72 Score=726.11 Aligned_cols=561 Identities=21% Similarity=0.280 Sum_probs=464.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc-cccc--c-chhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVS--R-EQLIGVFIFLSGGSSFFILGRAVLL 951 (1458)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~-~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1458)
++..++.+++...+. +..++++.++..++.++.++.+....+.. +..+ . ..+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666543322 22333444555566666777776555421 1111 1 1223334445555677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...+.+...+++.++++++++.|++||++.++|++++|+ +|++.+...+...+..++..++.+++.+++++.++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988877777777777777778888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
+++..++++..+..+..+..+...+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666665555555555555555666777889999999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc
Q 000505 1112 WLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP 1190 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1190 (1458)
+.....+++..+..+++.++ ......+.++.|....+.++...+...+..+...+.+++....+.+|+.++.+.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666655444333322 23344678888888888888888888899999999999999999999999998876643
Q ss_pred cccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000505 1191 LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1191 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1270 (1458)
.. ...+.+ +..|.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||
T Consensus 443 ~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 11 111111 23578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
+|+++++.+++|+++++|||||.+|+|||||||... .+++|++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
|||++||||++++|+||+||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHH
Q 000505 1430 LEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1430 l~~~~s~F~~l~~~~ 1444 (1458)
+++ +|.|++|+++.
T Consensus 679 ~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 679 LAL-QGLYARLWQQQ 692 (694)
T ss_pred HHc-CChHHHHHHhh
Confidence 975 68999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-72 Score=664.89 Aligned_cols=514 Identities=21% Similarity=0.283 Sum_probs=433.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHH
Q 000505 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1458)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~ 1007 (1458)
.+++..++..++..+....+.......+.++-..++.++++++.+.+..+-...|+|.+...++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666777777777788888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHH
Q 000505 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1458)
Q Consensus 1008 ~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~ 1087 (1458)
...+.+..+.+++.++..+|...++++..+++...+.......++...+..-..-..+.+||-+.++|+.|+|+|+..+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999877665544444433334445556666667777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh-hcC-CCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPR-SAIDPSLAGLAATYGLNLNVLQAWVIWN 1165 (1458)
Q Consensus 1088 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gl~l~y~l~l~~~~~~~i~~ 1165 (1458)
..++..+...++.+.........---+..+|++..+.++.+++.... +.. |.++-...-+++..+.-+-..+.-+-..
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99988888888888777766666556677888888777666655332 222 3444333334444455555556556666
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCC
Q 000505 1166 LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTG 1245 (1458)
Q Consensus 1166 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTG 1245 (1458)
+....+...+.+.+..+.+.|.+.+.. .......|....+|+.+|++++|+++. ++++|+||+++||++++|||+||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCC
Confidence 677777788899999999877664321 111122333345567779999998764 79999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCC-CCHHHHHHHHHHcCcH
Q 000505 1246 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLA 1324 (1458)
Q Consensus 1246 SGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~-~sdeeI~~aL~~~~L~ 1324 (1458)
||||||+++|+|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+. .+||||+++++++++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 999999999999999999999999999999999999999999999999999999999987754 8999999999999999
Q ss_pred HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 000505 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404 (1458)
Q Consensus 1325 ~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ 1404 (1458)
++++. |+|||+.+||+|.+|||||+||++||||++++++++++|||||+||.+||+.|++.|.+.++++|||+||||++
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~ 516 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHh
Q 000505 1405 TVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446 (1458)
Q Consensus 1405 ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~ 1446 (1458)
.+.++|+|+|||+|+++|.|+|++|.+ +++.|++|+++...
T Consensus 517 ~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~q~~ 557 (559)
T COG4988 517 DAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQQEG 557 (559)
T ss_pred HHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHHHhc
Confidence 999999999999999999999999997 47899999987654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=650.88 Aligned_cols=494 Identities=21% Similarity=0.300 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000505 942 FFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1458)
Q Consensus 942 ~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v 1021 (1458)
+.-++.-+.......+.-..++.++++++...+..-..+...|+++||+..|++.+|..+-..+...+.++...+++.+.
T Consensus 73 ~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~ 152 (573)
T COG4987 73 AARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG 152 (573)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444555677888889999999999999989999999999999999999999999999999999999988888888
Q ss_pred HHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Q 000505 1022 MSQAAWQVFPLFLV-ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100 (1458)
Q Consensus 1022 ~~~~~~~~~~v~~p-~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~ 1100 (1458)
+.+.+|++.+.+.. ++.+.+.+...+.+..|...+.-...++.+.++|.|.+.|....+.||++++|.+.+....+.+.
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 88888888765544 44455566777778888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHH
Q 000505 1101 CVTFHNCGTMEWLCLRINLLFNFAFFL-VLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI-WNLCNVENKMISVER 1178 (1458)
Q Consensus 1101 ~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i-~~~~~le~~~~sveR 1178 (1458)
+..........|-...+.++.++.+.. .++.......|..+...+.+++.-.+.....+.-+. ..+.++....-|.+|
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~R 312 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARR 312 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHH
Confidence 999999999999999999888877763 333344345555442222222222122222222222 445678888889999
Q ss_pred HHHHhcCCCCCccccCCCCCCCCCCCCc-cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhc
Q 000505 1179 ILQFTNIPSEAPLVIKNSRPSPEWPSSG-KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1179 i~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~r 1257 (1458)
+.+..+.++|.... + +.-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+||||||||||+++|.|
T Consensus 313 l~~i~~q~~e~~~~--~----~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 313 LNDILDQKPEVTFP--D----EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred HhhhccCCcccCCC--c----cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 99988766654321 1 1112222 799999999999888899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCc
Q 000505 1258 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1336 (1458)
Q Consensus 1258 l~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt 1336 (1458)
.++|++|+|..+|.+++.++.+++|+.|++++|.+++|+||+|+||... .+.||||+|++|+++||.+++++.|+||+|
T Consensus 387 ~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t 466 (573)
T COG4987 387 AWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNT 466 (573)
T ss_pred ccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhc
Confidence 9999999999999999999999999999999999999999999999754 468999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEe
Q 000505 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1416 (1458)
Q Consensus 1337 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~ 1416 (1458)
.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..||||+|||
T Consensus 467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHHHH
Q 000505 1417 EGKVLEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1417 ~G~ivE~g~p~~Ll~~~~s~F~~l~~ 1442 (1458)
+|+++|+|+|.+|++ ++|.|++|.+
T Consensus 547 ~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhc-cccHHHHHhc
Confidence 999999999999998 5799999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=721.27 Aligned_cols=513 Identities=22% Similarity=0.312 Sum_probs=428.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHH
Q 000505 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1458)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~ 1006 (1458)
..+...|+.++++..+..++....+...+.+...+++.+.+++++|++++|||++..|.+..|+++|++.+.+.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45666777888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchH
Q 000505 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQEN 1086 (1458)
Q Consensus 1007 ~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~ 1086 (1458)
.++..+.++++.+++.++..|+++++++++.++.......+.+..-.+...+...-+..-+...|++.+++|+.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999988888777777777666666666677777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHH-HhhcCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 000505 1087 RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA---FFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWV 1162 (1458)
Q Consensus 1087 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~ 1162 (1458)
+..+++.+.++...+...... -|.++...+...++ .+...++. ..+..+..++|.+...+.+.+.-...+...
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 999999988887766544322 22222222221111 11122221 222334455554433333333333333444
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCC-CcceeeeeEEeeCCcEEEEE
Q 000505 1163 IWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVV 1241 (1458)
Q Consensus 1163 i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIV 1241 (1458)
...+..+.+...|..+|.+.++..++.....+..++ .-..+|.|||+||+|+|+... .++|+|+||+|++||.||+|
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 445666777888899999987643332111111111 123579999999999997542 37999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHH
Q 000505 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINK 1320 (1458)
Q Consensus 1242 GrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~ 1320 (1458)
|+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+||+.... +.|++|+.+|++.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 6899999999999
Q ss_pred cCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000505 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400 (1458)
Q Consensus 1321 ~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IA 1400 (1458)
++.++||.++|+|+||.|||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+++|.|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1401 HRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1401 Hrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
||++||+++|+|+||++|+|+|.|+|+||++++ |.|++||+...
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 999999999999999999999999999999876 99999997653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=698.99 Aligned_cols=505 Identities=20% Similarity=0.254 Sum_probs=412.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhcccccccccchhH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000505 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLI-GV---FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1458)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l-~v---y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 971 (1458)
.+++.++..++.++.++.+++..+..........+ .. .+++.++..++.+++.+.....+.+...+++.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666677777665421111111111 11 112334455666777778888889999999999999999
Q ss_pred cCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Q 000505 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITT 1050 (1458)
Q Consensus 972 ~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~-~~~y~~~ 1050 (1458)
+.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..++++.++ ..++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998998999999999999999999999988776655554443 3444555
Q ss_pred HHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000505 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1458)
Q Consensus 1051 sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~ 1130 (1458)
.++..+......+.+.+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677889999999999999999999999999999998888877776665555555444444444433333222
Q ss_pred H-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEE
Q 000505 1131 I-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1458)
Q Consensus 1131 ~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1209 (1458)
+ ......+.++.|.....+.|...+...+..+...+.++.+...+.+|+.++.+.++|.+.. +...+...+|..+.|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEE
Confidence 2 2334467788888888888888888888888888899999999999999999876653211 1111111234567899
Q ss_pred EEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEc
Q 000505 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1458)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1289 (1458)
|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++|||
T Consensus 337 ~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 99999999764 3599999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000505 1290 QDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1458)
Q Consensus 1290 Qdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlL 1368 (1458)
|||++|+|||||||..+ ++.+||++++|++++++++++.++|+|+||.+||+|.|||||||||+|||||++++|+||||
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliL 494 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 494 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999985 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000505 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1458)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl 1403 (1458)
|||||+||++|++.|++.|++..+++|+|+||||+
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=700.12 Aligned_cols=548 Identities=19% Similarity=0.250 Sum_probs=446.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhcccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000505 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1458)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 971 (1458)
+.+++++.++..++.+..++++.+..+.-.... ...++..++++.++..+..+...........+...++..+++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777777888876664221111 1112223333333333333334444444555555566679999999
Q ss_pred cCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1458)
Q Consensus 972 ~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~s 1051 (1458)
+.|+++|++.+.|++++|+++|++.+...+...+..++..++..++.+++++..+|+++++++.++++++.+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777777777777777778888888999888887777777777788888888
Q ss_pred HHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000505 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1458)
Q Consensus 1052 r~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1131 (1458)
++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999888888777766555555555444444443333322222
Q ss_pred -HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEE
Q 000505 1132 -LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1458)
Q Consensus 1132 -~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1458)
......+.+++|.+..++.+...+...+..+...+.++.....+.+|+.++.+.+++.+.. ...++.. +..+.|++
T Consensus 261 g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~~-~~~~~I~~ 337 (588)
T PRK13657 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDLG-RVKGAVEF 337 (588)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCcC-CCCCeEEE
Confidence 3334567888888888888888888888888888888888899999999988765432211 1111111 23467999
Q ss_pred EeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEcc
Q 000505 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1458)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1458)
+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++|+||
T Consensus 338 ~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 338 DDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 9999999743 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1291 dp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
||.+|+||||+||... ++.+|++++++++++++++++.++|+|+||.++++|.+||||||||+|||||++++|+||+||
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999876 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++..
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 999999999999999999988789999999999999999999999999999999999999975 689999998654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=700.42 Aligned_cols=561 Identities=22% Similarity=0.300 Sum_probs=462.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhccc-ccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDE-KRKVS---REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1458)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~-~~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1458)
+.++.|++...+.. .+.+++.++...+.++.++.+....+. -+..+ ...++..++++.+...++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555432222 223334455556666666666544432 11111 1123334444445556667778888889
Q ss_pred HHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000505 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1458)
Q Consensus 954 ~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~ 1033 (1458)
.+.+....++..+++++++.|.++|++...|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888889999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 000505 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1458)
Q Consensus 1034 ~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1458)
+...++.+.+..++.+..+...+.....++...+++.|+++|+.+||+|+.++++.+++.+..++..+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777777777778888899999999999999999999999999999988888777766665555666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Q 000505 1114 CLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1458)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1458)
.....++..+...++.++ ......+.++.|.......|...+...+..+...+.++.+...+.+|+.++.+.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 555444443322222222 2334467788898888888888889999999999999999999999999998876553211
Q ss_pred cCCCCCCCCCCCCccEEEEeeeEEeCCCC-CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCe
Q 000505 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1458)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~ 1271 (1458)
....+..+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 325 --~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 --AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred --CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 111112234457899999999997543 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
|+++++.+++|++++|+||||.+|+||||+||.+.. +.+|++++++++++++.+++.++|+|+||+++|+|.+||||||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 999999999999999999999999999999998754 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||++||||++++|+||+||||||++|.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred hcCCChHHHHHHH
Q 000505 1431 EDNSSSFSKLVAE 1443 (1458)
Q Consensus 1431 ~~~~s~F~~l~~~ 1443 (1458)
+ +++.|++|++.
T Consensus 563 ~-~~~~~~~l~~~ 574 (576)
T TIGR02204 563 A-KGGLYARLARL 574 (576)
T ss_pred H-cCChHHHHHhh
Confidence 6 57899998864
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-73 Score=640.98 Aligned_cols=542 Identities=21% Similarity=0.332 Sum_probs=426.2
Q ss_pred HHHHhhhhhHHHhhccc--ccccccchhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Q 000505 904 QALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSG------GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPI 975 (1458)
Q Consensus 904 ~~~~~~~~~wl~~~~~~--~~~~~~~~~l~vy~~l~~------~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~ 975 (1458)
.......+...+|..+. .|..........|+.+.+ ++.++.-+|+++......-+.+.+-.++++++....+
T Consensus 228 rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSl 307 (790)
T KOG0056|consen 228 RLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSL 307 (790)
T ss_pred HHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhce
Confidence 33344444444444431 222222333444554433 3456677788888888889999999999999999999
Q ss_pred ccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 976 SFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL-MSQAAWQVFPLFLVILGISIWYQAYYITTAREL 1054 (1458)
Q Consensus 976 ~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v-~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l 1054 (1458)
.|.-...+|+++.-+.+..+.+. .+...+.++.-.++.+...++. ....+|++.++++.++.+|..+....-.--.+.
T Consensus 308 rwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~ 386 (790)
T KOG0056|consen 308 RWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKA 386 (790)
T ss_pred eeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHH
Confidence 99999999988877766655554 3333333333334443333332 234567777766666655554322111111222
Q ss_pred HHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHH
Q 000505 1055 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILV 1133 (1458)
Q Consensus 1055 ~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~ 1133 (1458)
+|....+...-...-.+++-+..|+|-|++|+...+++.+.++++++..+........+...-+.+.++..... ++.++
T Consensus 387 rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY 466 (790)
T KOG0056|consen 387 RRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY 466 (790)
T ss_pred HHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee
Confidence 23322333333445678999999999999999999999999999998877766666555555444444433322 22233
Q ss_pred hhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEee
Q 000505 1134 TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213 (1458)
Q Consensus 1134 ~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nv 1213 (1458)
....+..+.|-.-+..+|.+++-+.++|+-.-+..++++.+-.|++.+..+.++|- .+.+..++---.+|.|+|+||
T Consensus 467 ~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnv 543 (790)
T KOG0056|consen 467 RVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNV 543 (790)
T ss_pred eeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEe
Confidence 34466777788889999999999999999999999999999999999998755442 222222222235899999999
Q ss_pred eEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCC
Q 000505 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1458)
Q Consensus 1214 s~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1293 (1458)
+|.|+|+. +||+||||+++||+.||+|||||+||||++++|+|+++.++|.|.|||+||+.+..+.||++||+||||.+
T Consensus 544 tF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv 622 (790)
T KOG0056|consen 544 TFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTV 622 (790)
T ss_pred EEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcce
Confidence 99999875 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 000505 1294 LFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1458)
Q Consensus 1294 LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaT 1372 (1458)
||++||..||... ...+|||+.+|.+.++++|-|-..|+|++|.|||+|-.||||||||+++||++||+|.|++|||||
T Consensus 623 LFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEAT 702 (790)
T KOG0056|consen 623 LFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEAT 702 (790)
T ss_pred eecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchh
Confidence 9999999999865 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhhccc
Q 000505 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSK 1450 (1458)
Q Consensus 1373 sslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~~~~~ 1450 (1458)
|+||..||+.||.++.+..+++|.|+||||++||.++|.|+|+++|+|+|.|+|+||+++++|.|++|++......+.
T Consensus 703 SALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~t 780 (790)
T KOG0056|consen 703 SALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGKT 780 (790)
T ss_pred hhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999755544433
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=684.72 Aligned_cols=561 Identities=20% Similarity=0.269 Sum_probs=447.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR-EQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958 (1458)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~-~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 958 (1458)
++.|++..++ .+.+.+++.++..++.++.++.+.+..+.-...+. ..++..++++.+...+..++..........+.
T Consensus 10 l~~~l~~~k~--~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKN--RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554322 23344455566667777777777765542111111 11222222222233333333444444555555
Q ss_pred HHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000505 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1458)
Q Consensus 959 s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~ 1038 (1458)
..+++.++++++++.|++||++.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667799999999999999999999999999999999998888888777888888888888889999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 000505 1039 ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRIN 1118 (1458)
Q Consensus 1039 l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1118 (1458)
+++++..++.+..++..+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888899999999999999999999999999988888887766665544433333333333
Q ss_pred HHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCC
Q 000505 1119 LLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSR 1197 (1458)
Q Consensus 1119 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~ 1197 (1458)
++..+...++.++ ......+.++.|.+..+..|...+...+..+...+.++.....+.+|+.+..+.+++.+. ...
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~ 324 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Ccc
Confidence 3333222222222 233446778888887788888888888888888888888889999999998876544211 111
Q ss_pred CCCCCC-CCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC
Q 000505 1198 PSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276 (1458)
Q Consensus 1198 ~~~~wp-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i 1276 (1458)
+ ..++ ..+.|+++||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|+.++
T Consensus 325 ~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 A-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred C-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 1 1122 35679999999999754 3589999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1277 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
+.+++|++++++||||.+|++|+|+||... .+.+|++++++++.+++++++.++|+|+||.++++|.+||||||||++|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~l 482 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999875 4579999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+++++ +++
T Consensus 483 ARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~ 561 (585)
T TIGR01192 483 ARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ-KDG 561 (585)
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH-CCC
Confidence 9999999999999999999999999999999998888999999999999999999999999999999999999997 468
Q ss_pred hHHHHHHHHHhhc
Q 000505 1436 SFSKLVAEFLRRT 1448 (1458)
Q Consensus 1436 ~F~~l~~~~~~~~ 1448 (1458)
.|+++++.+....
T Consensus 562 ~y~~l~~~~~~~~ 574 (585)
T TIGR01192 562 RFYKLLRRSGLLT 574 (585)
T ss_pred hHHHHHHhCcccc
Confidence 9999998765433
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=687.69 Aligned_cols=510 Identities=21% Similarity=0.253 Sum_probs=426.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHH
Q 000505 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAF 1010 (1458)
Q Consensus 931 ~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~ 1010 (1458)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+...+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~ 119 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVD 119 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444555666677777778899999999999999999999999999999999999999999998777677777777
Q ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHH
Q 000505 1011 ALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1458)
Q Consensus 1011 ~~~~~i~~~~v~-~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~ 1089 (1458)
.++..++.++++ +..+|++.++++..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.|+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 120 SLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 666655555555 4788888777766666666666666666666666667778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCN 1168 (1458)
Q Consensus 1090 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~ 1168 (1458)
+++.+..++..+..........+..........+...++.+ .......+.++.|.+..+..|...+...+..+...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 279 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNI 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777666655444444333333333222222211 12334467788888877778888787778888888889
Q ss_pred HHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCH
Q 000505 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGK 1248 (1458)
Q Consensus 1169 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGK 1248 (1458)
+.....+.+|+.++.+.++|.+. ...+.+ +..+.|+++|++|+|+++.+++|+|+||+|+|||++||||+|||||
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 354 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCH
Confidence 99999999999999886654321 111111 2356899999999998655679999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHH
Q 000505 1249 STLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIV 1327 (1458)
Q Consensus 1249 STLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i 1327 (1458)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++++||+|.+|+||+|+||... .+++|++++++++.+++++++
T Consensus 355 STLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i 434 (569)
T PRK10789 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDI 434 (569)
T ss_pred HHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 468999999999999999999
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000505 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI 1407 (1458)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~ 1407 (1458)
.++|+|+||.++++|.+||||||||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++.
T Consensus 435 ~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT 514 (569)
T ss_pred HhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999878999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHh
Q 000505 1408 DNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1446 (1458)
Q Consensus 1408 ~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~~ 1446 (1458)
.||+|++|++|+++|.|+|++|+++ ++.|++|++....
T Consensus 515 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 515 EASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred cCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 9999999999999999999999964 6899999876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=678.91 Aligned_cols=514 Identities=21% Similarity=0.264 Sum_probs=424.6
Q ss_pred HHHHHHHHHHHhhhhhHHHhhcccc--cccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000505 897 LLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1458)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 971 (1458)
+++.++..++.+..++.+.+..+.. +... ...++..+++++++..++.+++.++....+.+...+++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666655422 1111 1123444555566677778888889999999999999999999999
Q ss_pred cCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1458)
Q Consensus 972 ~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~s 1051 (1458)
+.|.++|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++...++..++..++.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888999877766655555544445555555
Q ss_pred HHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-H
Q 000505 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-I 1130 (1458)
Q Consensus 1052 r~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~ 1130 (1458)
+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...++. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777889999999999999999999999999999888887777666655566665555555544333322 2
Q ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEE
Q 000505 1131 ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1458)
Q Consensus 1131 ~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1458)
.......+.++.|....+..|...+...+..+...+.++.....+.+|+.++.+.+++... .. +...+..+.|++
T Consensus 249 ~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~~-~~~~~~~~~i~~ 323 (529)
T TIGR02857 249 IGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----KA-PVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----Cc-CCCCCCCCeEEE
Confidence 2222236778888777777777777777888888899999999999999999975533211 11 111223468999
Q ss_pred EeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEcc
Q 000505 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1458)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1458)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++||||
T Consensus 324 ~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 324 SGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 99999998655579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1291 dp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
||.+|+|||||||... ++.+|+++++++++++++++++++|+||||.++|+|.+||||||||++||||++++|+||+||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999875 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEE
Q 000505 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1415 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL 1415 (1458)
||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=626.30 Aligned_cols=510 Identities=22% Similarity=0.336 Sum_probs=393.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHH
Q 000505 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1458)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~ 1006 (1458)
...+..|.+..+++.+|..++.+.+++...++-+....+.+.+.++..+++|.+..+|.+-++...-...+...+.-.+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998877777666666666655555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcch
Q 000505 1007 GLAFALIQLLSIIILMS-QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1458)
Q Consensus 1007 ~~~~~~~~~i~~~~v~~-~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e 1085 (1458)
.++..++.+......+. -..+.+.++.+.....|..+..+..+.-...++....+.....+..-|++.+-.+||+||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 55555444433332222 22333333333333333222111111111223333344445566778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIW 1164 (1458)
Q Consensus 1086 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~ 1164 (1458)
++..+++...+.++-+......+....+.+.-..++......+..... -...+..+.+-.-+..+...++...+..+-.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 999999999988887776665555544444444443332222222111 1122344445555555666666677776666
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCC
Q 000505 1165 NLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244 (1458)
Q Consensus 1165 ~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrT 1244 (1458)
.+.++-..+.-.+-.....+. +. .+.+. +++--+..|.|+|+||+|.|.|+ ++||+|+||+|++||||||||+|
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~--~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEV--DE--DIQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhh--hh--hhhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCC
Confidence 666666555544443332211 10 01111 11222346779999999999875 45999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCc
Q 000505 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHL 1323 (1458)
Q Consensus 1245 GSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L 1323 (1458)
||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.++++++++
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999998664 6899999999999999
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000505 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1458)
Q Consensus 1324 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl 1403 (1458)
+|.+.++|+|++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|+....++|+|+|+||+
T Consensus 467 hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 467 HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRL 546 (591)
T ss_pred HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1404 PTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1404 ~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
+++++||+|+++|+|+++|+|+|+||++ +++.|+.++...
T Consensus 547 ~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 547 DLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred hhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999999999999999999999999998 788887776543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=662.95 Aligned_cols=539 Identities=19% Similarity=0.245 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1458)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1458)
++...+.+++.+++..++.++..++..+.|+++..+++.+..+.. .... .+.+++++++..++..++.....+...+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PREA-LLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888999999999999999999999997642211 1111 23334445555556666666666777789
Q ss_pred HHHHHHHHHHHHHHHhcccccCC---CCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000505 346 GIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1458)
Q Consensus 346 g~~iR~~L~~~Iy~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1458)
+.++...+...+|+|.++++... .++|+++|.+++|++++.+++. .+..++...+.+++++++++ .++|+.+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVF-PINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999987543 3899999999999999998864 56666666665555555444 2444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYT 497 (1458)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I----~~~R~~El~~l~k~~~~ 497 (1458)
++++++...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666778888899999999999999999999999999999999999887776 44555555554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 498 CSAIAFLFWASPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (1458)
Q Consensus 498 ~a~~~~~~~~~p~~v~~~tF~~~~~~~~--------~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (1458)
..+..++.. .+.++ ++.++.+.+.|. .+++..++.++.+...+..|+..++..+..+.++++|.+||.++
T Consensus 250 ~~~~~~~~~-~~~~~-~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 250 SAVLEFFAS-ISIAL-VAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222 12212 223333333331 23344556666677788899999999999999999999999999
Q ss_pred hcccCCCCCCCCCC-CCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCc
Q 000505 570 IKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 570 L~~~e~~~~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 647 (1458)
++.++..+.....+ .......|+++|++|.|+++ .+.|+| ||++++|+++||+|++|||||||+++|+|++
T Consensus 328 l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 328 LETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 98765221111111 11123469999999877643 468999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCccc
Q 000505 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (1458)
Q Consensus 648 ~~~~G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ 713 (1458)
|++|++ .++| .++||||+||+|++||||||.+|++ .++++++++++.|+++++++.+|+|++|.
T Consensus 401 -p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 401 -PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred -CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 899987 8887 4899999999999999999999965 88999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEe
Q 000505 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1458)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~ 793 (1458)
+||+|.+||||||||++||||+++||+|+||||||||||+++++++.+ .+....+++|+|+|||+++.+..||+|++|+
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999998876 5677778999999999999999999999999
Q ss_pred CCeEEEcccchhhhhhcchHHHHHHHH
Q 000505 794 DGKIEQSGKYEDLIADQNSELVRQMKA 820 (1458)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1458)
+|+|++.|+++|+++ .+..+.++...
T Consensus 558 ~G~i~e~G~~~eL~~-~~~~y~~l~~~ 583 (588)
T PRK11174 558 DGQIVQQGDYAELSQ-AGGLFATLLAH 583 (588)
T ss_pred CCeEeecCCHHHHHh-cchHHHHHHHH
Confidence 999999999999998 56666666544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=656.43 Aligned_cols=523 Identities=17% Similarity=0.155 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHhhhhhHHHhhccccc-ccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000505 897 LLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1458)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ 972 (1458)
+++.++..++.+..++.+....+... ..+ ...++.+++++.++..++.+++.++....+.+....++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555666666776665554211 111 11233344444555667778888888899999999999999999999
Q ss_pred CccccccccChhhHHHHHhhhhhHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1458)
Q Consensus 973 ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~-~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~s 1051 (1458)
.|++. .|...+++++|++.+...+.. .+..++..++.++ .+++++..+|++.++++..+++.+.+..++.+..
T Consensus 92 ~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred CcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99842 366789999999999987765 3444444444443 3456788888887666554444445555555555
Q ss_pred HHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-H
Q 000505 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-I 1130 (1458)
Q Consensus 1052 r~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~ 1130 (1458)
+...+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+.................++..+...++. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677788899999999999999999999999999998888877666655444444433333333332222222 2
Q ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEE
Q 000505 1131 ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1458)
Q Consensus 1131 ~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1458)
.......+.+++|.+..+..|...+...+..+...+.++.....+.+|+.++.+.++|.+. ....+ +..+.|++
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEE
Confidence 2233456788999888888888888888899999999999999999999999987655321 11111 23468999
Q ss_pred EeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEcc
Q 000505 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1458)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1458)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++++||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1291 dp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
||.+|++|+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998654 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhh
Q 000505 1370 EATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
||||+||++|++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999875 5799999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-67 Score=710.23 Aligned_cols=512 Identities=18% Similarity=0.236 Sum_probs=424.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHH
Q 000505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1458)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~ 1008 (1458)
+...+++++++..++.+++.++....+.+...+++.++++++++.|++|||..+.|++.+|++.|++.+...+...+..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHH
Q 000505 1009 AFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1458)
Q Consensus 1009 ~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f 1088 (1458)
+..++.+++.++++++.+|.++++++.++++++++..++.+..+...+......+...+.+.|+++|+.+||+|+.|+++
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 258 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTI 258 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHH
Confidence 99999999999999999999999888777777777777777777777777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-HhhcC--------CCcCHHHHHHHHHHHHHHHHHH
Q 000505 1089 LLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPR--------SAIDPSLAGLAATYGLNLNVLQ 1159 (1458)
Q Consensus 1089 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~-~~~~~--------~~~~~~~~gl~l~y~l~l~~~~ 1159 (1458)
.+++.+..+...+..........+......++..+..+++.++. ..... +.++++.+...+.+.+.....+
T Consensus 259 ~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l 338 (1466)
T PTZ00265 259 LKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFML 338 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence 99998888777766655444444333333333322222222221 11112 1234443332333333222333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEE
Q 000505 1160 AWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKI 1238 (1458)
Q Consensus 1160 ~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Gekv 1238 (1458)
..+...+..+.....|.+|+.+.++.+++.+.. .+ ....|..+.|+|+||+|+|+.. ..++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 445566778888999999999999866553211 11 1112334589999999999753 236999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEE-cCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC----------
Q 000505 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILI-DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---------- 1307 (1458)
Q Consensus 1239 gIVGrTGSGKSTLl~~L~rl~~p~~G~I~I-DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---------- 1307 (1458)
||||+||||||||+++|.|+|+|++|+|.+ ||.|+++++.+++|++|++|||+|.||++||++||....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 579999999999999999999999999999999997521
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000505 1308 ------------------------------------------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339 (1458)
Q Consensus 1308 ------------------------------------------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~ 1339 (1458)
+.+|++++++++++++++++.++|+|+||.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 35789999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeC
Q 000505 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1340 e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~ 1417 (1458)
++|.+||||||||++|||||+++|+|||||||||+||++++..|++.|++.. +++|+|+||||++++..||+|+||++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 47999999999999999999999998
Q ss_pred C-----------------------------------------------EEEEecChhHHhhcCCChHHHHHHHH
Q 000505 1418 G-----------------------------------------------KVLEYDSPRQLLEDNSSSFSKLVAEF 1444 (1458)
Q Consensus 1418 G-----------------------------------------------~ivE~g~p~~Ll~~~~s~F~~l~~~~ 1444 (1458)
| +|+|+|+|+||+++++|.|+.|++..
T Consensus 655 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 6 59999999999987799999999654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=601.18 Aligned_cols=487 Identities=22% Similarity=0.388 Sum_probs=412.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCccccccccChh---hHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH-H
Q 000505 948 AVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS---RILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM-S 1023 (1458)
Q Consensus 948 ~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G---~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~-~ 1023 (1458)
..++...+..+.+.+-.+.|.++.+..+.|.-+..+| |.+.|=++-++.+ +-..+...+-.++.+....+++ .
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i---~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETI---LRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHH---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456677777888888889999999999998877666 4455555455444 3344444444444444443333 3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 000505 1024 QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVT 1103 (1458)
Q Consensus 1024 ~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~ 1103 (1458)
.++|+++.+.+..+++|.++.......--..+|.-..+.+...+.-.+++-+..|++.|+.|+.+..++.+.++.+.++.
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 46788888887777777666554444445666777777777888889999999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000505 1104 FHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF 1182 (1458)
Q Consensus 1104 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~ 1182 (1458)
.....+..||++.-..+........... ..-+..+..+.|..-+.-.+.+++..+++++-..+.++.+.....|+..+.
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 8888888888887766665443333222 223346677888888888999999999999999999999999999999998
Q ss_pred hcCCCCCccccCCCCCCCCCC-CCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC
Q 000505 1183 TNIPSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1183 ~~~~~E~~~~~~~~~~~~~wp-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p 1261 (1458)
.+.+.|-. +....++-|| ..|.|.|+||+|.|.+.. ++|+|+||++++|+++||||++|+||||+..+|+|+|++
T Consensus 240 l~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 240 LDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred hccchhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 87766532 2333455675 467899999999999875 499999999999999999999999999999999999999
Q ss_pred CCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccC
Q 000505 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1458)
Q Consensus 1262 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1458)
++|.|.|||+||..+..+.+|+.||+||||.+||+.|+..|+...+ ..+++|++.|+++++++++|+.+|+|+||.|||
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccch
Confidence 9999999999999999999999999999999999999999998654 689999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000505 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420 (1458)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~i 1420 (1458)
.|-.||||||||+++||++|++|+||+||||||+||..||+.||.+|++..+++|.++||||++||.++|.|+||++|+|
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i 475 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRI 475 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhhcCCChHHHHHH
Q 000505 1421 LEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1421 vE~g~p~~Ll~~~~s~F~~l~~ 1442 (1458)
+|.|+|++|+++ +|.|++|+.
T Consensus 476 ~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 476 VERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EecCcHHHHHHc-CChHHHHhc
Confidence 999999999975 899999874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=621.38 Aligned_cols=465 Identities=25% Similarity=0.376 Sum_probs=354.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCC----CCcEEEECC-----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~----~G~~i~~~g----- 659 (1458)
.++++|.+.++.... ...+.++| ||++.+||++||+|.+||||||+.++|.|.+++. +|++ .++|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 688999988887541 22468899 9999999999999999999999999999999876 7876 5665
Q ss_pred ------------EEEEEcCCCC-CCC--CcHHHHHhc----CCCC-CHHHHHHH---HHHhhhhhhHHhhcCCCcccccC
Q 000505 660 ------------KKAYVPQSSW-IQT--GTIRENILF----GKDM-RQSFYEEV---LEGCALNQDIEMWADGDLSVVGE 716 (1458)
Q Consensus 660 ------------~~ayv~Q~~~-i~~--~Ti~enI~f----g~~~-~~~~y~~v---l~~c~l~~dl~~l~~gd~t~ig~ 716 (1458)
.+||++|+|+ .+| .||.+-|.= .... .++..+++ ++..+|.+. ... +.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~-------~~~--~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDP-------ERR--DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCCh-------hhh--cc
Confidence 3799999986 233 477666642 2222 12222222 333333322 111 45
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEe
Q 000505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1458)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~ 793 (1458)
..+.|||||||||.||+||..+|+++|+||||+|||+.++.+|.+ +++.+. .|.++|+||||+..+.+ ||+|+||+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 788999999999999999999999999999999999999999987 455443 48999999999999876 99999999
Q ss_pred CCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcC
Q 000505 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELG 873 (1458)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 873 (1458)
+|++++.|+.++++.+....+...+-+
T Consensus 230 ~G~iVE~G~~~~i~~~p~hpYT~~Ll~----------------------------------------------------- 256 (539)
T COG1123 230 KGEIVETGPTEEILSNPQHPYTRGLLA----------------------------------------------------- 256 (539)
T ss_pred CCEEEEecCHHHHHhccCCcccHHHHh-----------------------------------------------------
Confidence 999999999999876211111000000
Q ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 874 RVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1458)
Q Consensus 874 ~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1458)
..|..
T Consensus 257 ----------------------------------------------a~p~~----------------------------- 261 (539)
T COG1123 257 ----------------------------------------------AVPRL----------------------------- 261 (539)
T ss_pred ----------------------------------------------hCCCc-----------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000505 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1458)
Q Consensus 954 ~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~ 1033 (1458)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 000505 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1458)
Q Consensus 1034 ~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1458)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Q 000505 1114 CLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI 1193 (1458)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~ 1193 (1458)
..+..
T Consensus 262 ------------------------------------------------------------------------~~~~~--- 266 (539)
T COG1123 262 ------------------------------------------------------------------------GDEKI--- 266 (539)
T ss_pred ------------------------------------------------------------------------ccccc---
Confidence 00000
Q ss_pred CCCCCCCCCCCCccEEEEeeeEEeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCc
Q 000505 1194 KNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1458)
Q Consensus 1194 ~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G 1264 (1458)
........-+...-++++|++.+|.. +...+++||||++++||.+||||.||||||||.++|+|+++|++|
T Consensus 267 ~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G 346 (539)
T COG1123 267 IRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG 346 (539)
T ss_pred cccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 00000000001234789999999974 124689999999999999999999999999999999999999999
Q ss_pred EEEEcCee--CCCCCHHHHhcceEEEccCCCCc---cccHHHhcC-cCCC---C----CHHHHHHHHHHcCcHH-HHHhc
Q 000505 1265 RILIDGVD--ISMIGLQDLRSRLSIIPQDPMLF---QGTVRTNLD-PLEQ---H----SDQEIWEVINKCHLAE-IVRQD 1330 (1458)
Q Consensus 1265 ~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~~---~----sdeeI~~aL~~~~L~~-~i~~l 1330 (1458)
+|.++|.| .+.-....+|+++-+|.|||+-. ..||+++|. |... . ..+.+-+.+++++|.+ +..+.
T Consensus 347 ~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 99999977 33333556888999999999633 359999985 4321 1 1234777789998875 33333
Q ss_pred ccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh
Q 000505 1331 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID 1408 (1458)
Q Consensus 1331 p~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~ 1408 (1458)
| ..||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|++..+ +.|.|+|||++..+..
T Consensus 427 P-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 427 P-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred c-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 3 46999999999999999999999999999999999999999999886543 6899999999999987
Q ss_pred -cCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 000505 1409 -NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1409 -~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
||||.||++|+|||.|+.++..+++...|.+...+
T Consensus 496 i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 496 IADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred hCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999999999999999888777766543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=659.95 Aligned_cols=483 Identities=23% Similarity=0.359 Sum_probs=354.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|.... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4689999999996420 12468999 99999999999999999999999999999999999986 4432
Q ss_pred -------------------EEEEEcCCC--CC-CCCcHHHHHhcCCC----CCH----HHHHHHHHHhhhhhhHHhhcCC
Q 000505 660 -------------------KKAYVPQSS--WI-QTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADG 709 (1458)
Q Consensus 660 -------------------~~ayv~Q~~--~i-~~~Ti~enI~fg~~----~~~----~~y~~vl~~c~l~~dl~~l~~g 709 (1458)
.+|||+|+| -+ ...||+|||.++.. .+. ++..++++..++...
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 34 34699999998632 122 122233333333110
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-C
Q 000505 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-A 786 (1458)
Q Consensus 710 d~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~ 786 (1458)
.........+|||||||||+|||||+.+|+++||||||++||+.+...+.+ ++..+. + ++|||+||||++++.. |
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 112456778999999999999999999999999999999999999888776 455543 3 7999999999999865 9
Q ss_pred CEEEEEeCCeEEEcccchhhhhhcchHHHH-HHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCC
Q 000505 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVR-QMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRS 865 (1458)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1458)
|+|++|++|++++.|+++++.......+.. ++.. . +.. .
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~-------~--------------------------~~~-~------ 276 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAA-------V--------------------------PQL-G------ 276 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhcCCCChhhhhhhhc-------c--------------------------Ccc-c------
Confidence 999999999999999988775411100000 0000 0 000 0
Q ss_pred ccchhhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHH
Q 000505 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFIL 945 (1458)
Q Consensus 866 ~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~ 945 (1458)
+ ..|..
T Consensus 277 --~--~~~~~---------------------------------------------------------------------- 282 (623)
T PRK10261 277 --A--MKGLD---------------------------------------------------------------------- 282 (623)
T ss_pred --c--ccccc----------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025 (1458)
Q Consensus 946 ~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~ 1025 (1458)
.| ++ .+
T Consensus 283 ---------------------------~~---------~~---------------~~----------------------- 288 (623)
T PRK10261 283 ---------------------------YP---------RR---------------FP----------------------- 288 (623)
T ss_pred ---------------------------CC---------cc---------------cc-----------------------
Confidence 00 00 00
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 000505 1026 AWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105 (1458)
Q Consensus 1026 ~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~ 1105 (1458)
T Consensus 289 -------------------------------------------------------------------------------- 288 (623)
T PRK10261 289 -------------------------------------------------------------------------------- 288 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 000505 1106 NCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI 1185 (1458)
Q Consensus 1106 ~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1185 (1458)
. .. ...
T Consensus 289 -------------------------------~--~~-----------------------------------------~~~ 294 (623)
T PRK10261 289 -------------------------------L--IS-----------------------------------------LEH 294 (623)
T ss_pred -------------------------------c--cc-----------------------------------------ccc
Confidence 0 00 000
Q ss_pred CC-CCccccCCCCCCCCCCCCccEEEEeeeEEeCCC---------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHH
Q 000505 1186 PS-EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT---------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255 (1458)
Q Consensus 1186 ~~-E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L 1255 (1458)
+. +.+..... ..+ +...-++++|++++|+.. ...+|+|+||+|++||++||+|+||||||||+++|
T Consensus 295 ~~~~~~~~~~~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i 370 (623)
T PRK10261 295 PAKQEPPIEQD-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 370 (623)
T ss_pred ccccCcccccc-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 00 00000000 000 011248999999999621 13599999999999999999999999999999999
Q ss_pred hccCCCCCcEEEEcCeeCCCCCHH---HHhcceEEEccCC--CCccc-cHHHhcCc-C---CCCC----HHHHHHHHHHc
Q 000505 1256 FRVVEPSGGRILIDGVDISMIGLQ---DLRSRLSIIPQDP--MLFQG-TVRTNLDP-L---EQHS----DQEIWEVINKC 1321 (1458)
Q Consensus 1256 ~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~g-TIR~NLdp-~---~~~s----deeI~~aL~~~ 1321 (1458)
.|+.+|++|+|.++|.++...+.. .+|++++||||+| .++.. |+++|+.. . +... ++++.+.|+.+
T Consensus 371 ~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 371 LRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred HcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999877643 4678899999998 36654 99999852 1 1111 24567788888
Q ss_pred CcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEE
Q 000505 1322 HLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVIT 1398 (1458)
Q Consensus 1322 ~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~ 1398 (1458)
++. +.. +..+ ..||||||||++|||||+.+|++|||||||++||..+.+.|.+.|++.. .+.|||+
T Consensus 451 gL~~~~~-------~~~~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~ 519 (623)
T PRK10261 451 GLLPEHA-------WRYP----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 (623)
T ss_pred CCCHHHh-------hCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 874 332 3333 3699999999999999999999999999999999999999999998754 3689999
Q ss_pred EecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH-HHH
Q 000505 1399 VAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK-LVA 1442 (1458)
Q Consensus 1399 IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~-l~~ 1442 (1458)
|||+++.+.. ||||++|++|+++|.|+++++++++...|.+ ++.
T Consensus 520 isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 520 ISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999876 9999999999999999999998776555543 444
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=604.60 Aligned_cols=540 Identities=23% Similarity=0.316 Sum_probs=430.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1458)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1458)
.+.+..|+.+..+.++.++.......-|.++.++++.+.. .+... ..+....++++.+...+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568888888888888888888899999999998876 22201 112233444444444444444445556667777
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000505 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 346 g~~iR~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1458)
..|+|..+...+-+.-...-. ...+|++++.++.|++-+.+.+. ++.+..-..+|...++.+++. +.|-.++..+++
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD-~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i~ 297 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFD-ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhc-cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHH
Confidence 778887776666665543322 22799999999999999988754 677777777888888877663 344556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSA 500 (1458)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~----f~~~I~~~R~~El~~l~k~~~~~a~ 500 (1458)
+.+++.+...+++..++.-++..++.-+-.+...|.|++||+|+.|+-|+. |.+++++.++. -+|-....++
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i----~~k~a~a~~~ 373 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKL----SKKEAVAYGI 373 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhH
Confidence 666677777778888888777777777788899999999999999999986 44444443332 2222222221
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000505 501 IAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1458)
Q Consensus 501 ~~~~--~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1458)
.... +..--..++++.+|.+...++.+|++...+++.+-..+..++..+....+.++++..+-+|+-+|++.+++-+.
T Consensus 374 f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~ 453 (716)
T KOG0058|consen 374 FFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL 453 (716)
T ss_pred hHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC
Confidence 1111 11122456677888999999999999999999999999999999999999999999999999999998762221
Q ss_pred -CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 579 -ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 579 -~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
....|. .-...|+|+|++|+||.+ ++.++|+| ||+|+|||.||+|||+||||||+.++|+..++|++|++ .
T Consensus 454 ~G~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-l 526 (716)
T KOG0058|consen 454 TGTLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-L 526 (716)
T ss_pred CCccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-E
Confidence 111222 345689999999999988 67899999 99999999999999999999999999999999999997 8
Q ss_pred ECC-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
++| +||+|.|+|.+|++||+|||.+|.+ .++++.+++.+.+.-++.+..+|+|.+|.+||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 888 3799999999999999999999986 34566777788888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEccc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1458)
|||||||||||||++||.|+||||.|||||+++ +++.++.+...++++|||+|.|+++.+++||+|+++++|++++.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 999999999999999999999999999999986 6777888988889999999999999999999999999999999999
Q ss_pred chhhhhhcchHHHHHHHHh
Q 000505 803 YEDLIADQNSELVRQMKAH 821 (1458)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~ 821 (1458)
++|+++..++.+.++++.+
T Consensus 686 h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred HHHHhhCcccHHHHHHHHh
Confidence 9999996667788887654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=636.11 Aligned_cols=516 Identities=17% Similarity=0.138 Sum_probs=401.1
Q ss_pred HHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Q 000505 897 LLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1458)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ 976 (1458)
+++.++.....++..+.++.+.+.... .....+..++++.++..++.++..++....+.+...+++.++++++++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~ 102 (555)
T TIGR01194 24 IALGLAGGLAIIALLASINNAIHEENF-LGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE 102 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 334444555556666666655532111 1111233355555666677888888889999999999999999999999999
Q ss_pred cccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056 (1458)
Q Consensus 977 ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~r 1056 (1458)
||++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.+.++++.++++.+++..+..+..++..+
T Consensus 103 ~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~ 181 (555)
T TIGR01194 103 EIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH 181 (555)
T ss_pred HHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875 46677777888888888899999999888776666655555555555555556
Q ss_pred HHhhhhchHHHHHHHhhhhhHHHHhhcchH--HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000505 1057 MVGTRKAPILHHFSESIAGATTIRCFNQEN--RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134 (1458)
Q Consensus 1057 l~~~~~spl~~~~~Etl~G~~tIraf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~ 1134 (1458)
......+.+.+++.|.+.|+.++|+|+.++ ...+++.+..++..+................+++..+...+..++.
T Consensus 182 ~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (555)
T TIGR01194 182 AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAA-- 259 (555)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666677889999999999999999999954 4455555555555544433222222222222222222111111111
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc--CCCCC---CCCCCCCccEE
Q 000505 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI--KNSRP---SPEWPSSGKIE 1209 (1458)
Q Consensus 1135 ~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~--~~~~~---~~~wp~~g~I~ 1209 (1458)
...+.++.|.....+.|...+...+..+...+.++++...+.+|+.++.+.+.+++... ++... .+..+..+.|+
T Consensus 260 ~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 260 AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 11256677777777788888888888889999999999999999999976432221110 00000 01112346899
Q ss_pred EEeeeEEeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1210 LENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1210 ~~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
++||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999753 236999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
++||||.+|++|+|+|+. .+.+|++++++++++++++++..+|+|+||. .+||||||||++||||++++|+||
T Consensus 420 ~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred EEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999974 3578999999999999999999999999995 689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEecChhhhhhcCEEEEEeCCEEEEe
Q 000505 1367 VLDEATASIDTATDNVIQQTIRE-E-TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~-~-~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~ 1423 (1458)
|||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|++|++|+++|.
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999887643 2 368999999999999999999999999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=644.50 Aligned_cols=449 Identities=27% Similarity=0.405 Sum_probs=342.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1458)
.++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996320 12468999 999999999999999999999999999999986 68986 5543
Q ss_pred -------------EEEEEcCCCC--CC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhhhhhhHHhhcCCCccccc
Q 000505 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1458)
Q Consensus 660 -------------~~ayv~Q~~~--i~-~~Ti~enI~fg~----~~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig 715 (1458)
.++|++|+|. +. ..|+++|+.++. .... ++.+++++.+++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 4799999984 33 359999987431 1111 2233344444443210 0124
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEE
Q 000505 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVM 792 (1458)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l 792 (1458)
.+..+|||||||||+|||||+.+|+++||||||++||+.+...+.+ ++..+. .++|+|+||||++++.. ||+|++|
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 5678999999999999999999999999999999999999888776 454443 37999999999999875 9999999
Q ss_pred eCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhc
Q 000505 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1458)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1458)
++|++++.|+.+++..... ..
T Consensus 231 ~~G~i~~~g~~~~~~~~~~-------------------------------------~~---------------------- 251 (529)
T PRK15134 231 QNGRCVEQNRAATLFSAPT-------------------------------------HP---------------------- 251 (529)
T ss_pred ECCEEEEeCCHHHHhhCCC-------------------------------------CH----------------------
Confidence 9999998887655432000 00
Q ss_pred CcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1458)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1458)
+....
T Consensus 252 ----------~~~~~----------------------------------------------------------------- 256 (529)
T PRK15134 252 ----------YTQKL----------------------------------------------------------------- 256 (529)
T ss_pred ----------HHHHH-----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1458)
Q Consensus 953 ~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v 1032 (1458)
T Consensus 257 -------------------------------------------------------------------------------- 256 (529)
T PRK15134 257 -------------------------------------------------------------------------------- 256 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000505 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1458)
Q Consensus 1033 ~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1458)
+ +.
T Consensus 257 --------------~-------------------------------------------------~~-------------- 259 (529)
T PRK15134 257 --------------L-------------------------------------------------NS-------------- 259 (529)
T ss_pred --------------H-------------------------------------------------Hh--------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Q 000505 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1458)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1458)
.+ + .+...+
T Consensus 260 ----------------------~~-----------------------------------------~------~~~~~~-- 268 (529)
T PRK15134 260 ----------------------EP-----------------------------------------S------GDPVPL-- 268 (529)
T ss_pred ----------------------Cc-----------------------------------------c------cccccc--
Confidence 00 0 000000
Q ss_pred cCCCCCCCCCCCCccEEEEeeeEEeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC
Q 000505 1193 IKNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1458)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1263 (1458)
++ +....|+++|++++|.. +...+|+|+||+|++||++||+|+||||||||+++|.|++ |++
T Consensus 269 -----~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~ 339 (529)
T PRK15134 269 -----PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQ 339 (529)
T ss_pred -----CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCC
Confidence 00 01114899999999952 1246999999999999999999999999999999999998 489
Q ss_pred cEEEEcCeeCCCCCHHH---HhcceEEEccCC--CCccc-cHHHhcCcC---C--CCC----HHHHHHHHHHcCcH-HHH
Q 000505 1264 GRILIDGVDISMIGLQD---LRSRLSIIPQDP--MLFQG-TVRTNLDPL---E--QHS----DQEIWEVINKCHLA-EIV 1327 (1458)
Q Consensus 1264 G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~g-TIR~NLdp~---~--~~s----deeI~~aL~~~~L~-~~i 1327 (1458)
|+|.+||.++...+..+ +|++++|+||+| .+|.. |+++|+... . ..+ ++++.++++..++. +..
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 419 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR 419 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999998776543 478899999998 36664 999999631 1 111 23466777777774 222
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh
Q 000505 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1405 (1458)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~t 1405 (1458)
+.++ .+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.
T Consensus 420 -------~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 420 -------HRYP----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred -------hcCC----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 2233 4699999999999999999999999999999999999999999999764 37899999999999
Q ss_pred hhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1406 VID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1406 i~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
+.. ||+|++|++|++++.|+++++++++.
T Consensus 489 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 489 VRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred HHHhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 875 99999999999999999999987554
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=644.68 Aligned_cols=535 Identities=16% Similarity=0.212 Sum_probs=436.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1458)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1458)
+..++.+++.++...+..++..++..+.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDW-LRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778888888889999999999999987654322 111 333444555555666666666667788899
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 347 ~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
.++...+...+|+|.++++.. .+++|+++|.++.| +.+.+++. .+..+....+.+++.+++++. ++|+.+++.+
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l 300 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLL-YDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999998653 34999999999988 67887764 344455555555555555554 3436667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1458)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~ 502 (1458)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|++.||.+++|+.+.++.++.+.++.+...+.....+...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888899999999999999999999999999999999999999999888877776665554444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000505 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1458)
Q Consensus 503 ~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1458)
.+...... .+.+++++++.+.++.++.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22222221 2334567778888899999999999999999999999999999999999999999999998765221111
Q ss_pred ------CCCC-CCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCC
Q 000505 581 ------EPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1458)
Q Consensus 581 ------~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 652 (1458)
.... ......|+++|++|+|+++ ..+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 0101 1223579999999999864 3578999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------EEEEEcCCCCCCCCcHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 653 ~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~-~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
++ .++| .++||||+|+++++||||||.++. +.+++++.++++.+++.++++.+|+|.+|.+||+|
T Consensus 535 ~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 535 EI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred EE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 87 8876 479999999999999999999886 47888999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEE
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~ 798 (1458)
.+|||||||||+||||++++|+|+||||||||||+++++++++.+.. .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999876543 489999999999999999999999999999
Q ss_pred EcccchhhhhhcchHHHHH
Q 000505 799 QSGKYEDLIADQNSELVRQ 817 (1458)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~ 817 (1458)
+.|+++|+++ .++.+.++
T Consensus 691 ~~G~~~~Ll~-~~~~y~~l 708 (710)
T TIGR03796 691 QRGTHEELWA-VGGAYARL 708 (710)
T ss_pred EecCHHHHHH-cCCcHHHH
Confidence 9999999987 45555543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=637.49 Aligned_cols=537 Identities=20% Similarity=0.237 Sum_probs=431.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1458)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1458)
+++..++.+++.++...++.++..++.++.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSL-LVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778888888889999999999999999999997653322 111 3334444555555566666666667788
Q ss_pred HHHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAF 419 (1458)
Q Consensus 345 ~g~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~--~~~w~~plqi~~al~lL~~~lG~~a~l 419 (1458)
++.++...+...+|+|.++++.. .+++|+++|.++ |++.+.+++... ..+...++ +++++++++.. +|+.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYY-SWKLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHH
Confidence 89999999999999999988643 348999999997 899998876432 23333333 33444444433 336666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1458)
Q Consensus 420 ~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a 499 (1458)
+.++++++.+++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776667777788888889999999999999999999999999999999999999888887765555444444433333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000505 500 AIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1458)
Q Consensus 500 ~~~~~~~~~p~~--v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1458)
....+......+ +.++.++.+.+.++.++.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 332222222222 233456777777889999999999999999999999999999999999999999999998765221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
.... ........|+++|++|+|+++ .++.|+| ||++++||+++|+|+||||||||+++|+|+++|++|++ .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111123469999999999753 3578999 99999999999999999999999999999999999997 8
Q ss_pred ECC-------------EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
++| .++||||+|+++++||+|||.+|++.++++..++++.|+++++++.+|+|.+|.+||+|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 887 3799999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1458)
|||||++||||++++|+|++||||||+||+++++++.+.+ +.. ++|+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999887754 433 6899999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHH
Q 000505 804 EDLIADQNSELVRQMK 819 (1458)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1458)
+|+++ .++.+.++..
T Consensus 669 ~~Ll~-~~~~y~~l~~ 683 (686)
T TIGR03797 669 DELMA-REGLFAQLAR 683 (686)
T ss_pred HHHHh-CCcHHHHHHH
Confidence 99987 5666666553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=637.71 Aligned_cols=530 Identities=22% Similarity=0.315 Sum_probs=433.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1458)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1458)
.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888899999999999999997653322 111 2333444444445555555555566778
Q ss_pred HHHHHHHHHHHHHHHHhcccccC--CCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000505 345 IGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1458)
Q Consensus 345 ~g~~iR~~L~~~Iy~K~L~ls~~--~~~~G~ivnlms~D~~ri~~~~~~--~~~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1458)
++.++...+...+|+|.++++.. .+++|++++.+ .|++.+.+++.. +..+...++-+ +.+++++. +.|+.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~-~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAI-IGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHH-HHhHHHHH
Confidence 88899999999999999988654 33899999999 799999987653 23333444433 33344443 33366777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1458)
Q Consensus 421 gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~ 500 (1458)
.++++++.+++...+.+..++..++.++..+++.+.+.|.++|++.||.+++|+.+.++.++..++..+...+.....+.
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888899999999999999999999999999999999999999999999988887777766665555444
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 000505 501 IAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1458)
Q Consensus 501 ~~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~ 577 (1458)
...+...... .+.+++++++.+.++.++.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++ ++
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3333222222 23345677888888899999999999999999999999999999999999999999999987652 21
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
.....+.......|+++|++|+|+.+ ..+.|+| |++|++||+++|+|+||||||||+++|+|+++|++|++ .
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 523 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-L 523 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-E
Confidence 11111111223469999999999753 3578999 99999999999999999999999999999999999987 8
Q ss_pred ECC-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
++| .++||+|+|++|++||+|||.++++ .+++++.++++.+++.++++.+|+|.+|.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 887 5799999999999999999999986 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEccc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1458)
||||||++||||++++|++++||||||+||+++++++.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 999999999999999999999999999999999888876 4666667999999999999999999999999999999999
Q ss_pred chhhhh
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~~l~~ 808 (1458)
++|+++
T Consensus 683 ~~eLl~ 688 (694)
T TIGR03375 683 KDQVLE 688 (694)
T ss_pred HHHHHH
Confidence 999876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=635.82 Aligned_cols=531 Identities=20% Similarity=0.268 Sum_probs=408.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1458)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~ 348 (1458)
++.+|+.++...++.++..++..+.|+++..+++.+....+.... ...++++++.++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888999999999999999999988643320111 1011122222222233333333344445555556
Q ss_pred HHHHHHHHHHHHhccccc---CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000505 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1458)
+|. .+|+|.++... ....+|+++|.++.|++.+.+++. .++.++...+++++++++++. ++|..+++.++.
T Consensus 236 lr~----~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~ 310 (711)
T TIGR00958 236 IRE----DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLIN 310 (711)
T ss_pred HHH----HHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 655 55666655533 234899999999999999988764 456666666777776666664 344556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1458)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~ 504 (1458)
+++...+...+.+..++..++.++..++......|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888888888999999999999999999999999999877766665443333222222222221111
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000505 505 FWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (1458)
Q Consensus 505 ~~~~--p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 582 (1458)
.... -..+.++.++.+.+.++.++.+.+++++.++..+..|+..++..+..+.+++++.+||.+|++.+++.+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 1111 12233455677777888999999999999999999999999999999999999999999999876522211111
Q ss_pred CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--
Q 000505 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1458)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-- 659 (1458)
...+....|+++|++|+|+++ ++.+.|+| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~~ 544 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVP 544 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEE
Confidence 111223469999999999854 33579999 99999999999999999999999999999999999987 8887
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHH
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 727 (1458)
.++||+|+|+++++||||||.+|.+ .++++..++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 4799999999999999999999965 5678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhh
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~ 807 (1458)
|++||||++++|+|+|||||||+||+++.+.+.+ ....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999999999999999999999888776 2234689999999999999999999999999999999999998
Q ss_pred hhcchHHH
Q 000505 808 ADQNSELV 815 (1458)
Q Consensus 808 ~~~~~~~~ 815 (1458)
+ .++.+.
T Consensus 702 ~-~~~~y~ 708 (711)
T TIGR00958 702 E-DQGCYK 708 (711)
T ss_pred h-CCCchH
Confidence 7 444443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=616.45 Aligned_cols=541 Identities=23% Similarity=0.279 Sum_probs=445.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1458)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1458)
+-++..++-+|+.+.-..+..++..++.++.|++.+.++|.+--..+ ...=+++++++.+..+.+.+....-.|...
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666778878777888888899999999999999998754432 222445666677777777777666667788
Q ss_pred HHHHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhhhHHH
Q 000505 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI-HRI-WLLPVQVFLALVILYKNLGAAPA 418 (1458)
Q Consensus 344 r~g~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~-~~~-w~~plqi~~al~lL~~~lG~~a~ 418 (1458)
.++.|+...+...+|++.|+++.. .|++|++++.++ |.++|.++...- ..+ .-.|+ .++.+.+++..=+ +.+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~-~~i~l~vm~~ys~-~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSW-KLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHH
Confidence 899999999999999999998764 459999999987 899999987532 222 22222 2333334443334 778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1458)
Q Consensus 419 l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~ 498 (1458)
+++++.+++.+.+..++.+..++.-++.++..-++-+...|.++||++||..+-|+.+..+.++.=.+..+.-.+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999999887666666655555444
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000505 499 SAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1458)
Q Consensus 499 a~~~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 576 (1458)
..........+. -+.+++||++.++++.+|.|..+++..+...+..|+..+.+....+.+++++.+|+.+.++.|.+.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 443333222222 244678999999999999999999999999999999999999999999999999999999887632
Q ss_pred CCCC-CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcE
Q 000505 577 KPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 577 ~~~~-~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~ 654 (1458)
+... .......+..|+++|++|.|+.+ +.+.|+| |++|++||++||+|+||||||||+|.|+|.++|.+|++
T Consensus 457 ~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 457 EGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred ccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 2211 11223345689999999999876 3479999 99999999999999999999999999999999999997
Q ss_pred EEECC-------------EEEEEcCCCCCCCCcHHHHHhcCCCCCH-HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 655 i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~~-~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++| .++||+|++.+|+|||+|||.+|.|... +...++++..+.++++..+|.|.+|.+||+|.+
T Consensus 531 -~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 531 -LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred -EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 8888 4799999999999999999999998655 555555666678899999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEc
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~ 800 (1458)
||||||||++||||++++|+|+||||||||||+++.+.+.++ +.....++|+|+|||+++.+..||+|+||++|+|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 999999999999999999999999999999999998888775 5666788999999999999999999999999999999
Q ss_pred ccchhhhhhcchHHHHHHH
Q 000505 801 GKYEDLIADQNSELVRQMK 819 (1458)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~ 819 (1458)
|+++|+++ .++.+.++..
T Consensus 689 gs~~ell~-~~g~y~~l~~ 706 (709)
T COG2274 689 GSHEELLA-QGGLYARLYQ 706 (709)
T ss_pred CCHHHHHH-hcChHHHHHh
Confidence 99999998 4666665543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=684.25 Aligned_cols=250 Identities=21% Similarity=0.279 Sum_probs=203.1
Q ss_pred HHHHHHHHhhhHHHHHHHHh--cCCCCCccccCCCCCCCCCCCCc--cEEEEeeeEEeC--CCCCcceeeeeEEeeCCcE
Q 000505 1164 WNLCNVENKMISVERILQFT--NIPSEAPLVIKNSRPSPEWPSSG--KIELENLLVQYN--PTLPMVLKGITCTFPGEKK 1237 (1458)
Q Consensus 1164 ~~~~~le~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~~~nvs~~Y~--~~~~~vL~~is~~I~~Gek 1237 (1458)
+...+.|+++.++||..+|. +.+.|.+.......++. ..| .++++||+++|+ ++.+.+|+|||++++|||+
T Consensus 715 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~ 791 (1394)
T TIGR00956 715 KAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791 (1394)
T ss_pred hcccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEE
Confidence 33456777888999998873 34444432222211221 134 379999999985 3345799999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCC-ccccHHHhcCcC------C
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVRTNLDPL------E 1307 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L-F~gTIR~NLdp~------~ 1307 (1458)
+||+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..||||||+.. .
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999998 78899999999985 3578999999998764 566999999731 1
Q ss_pred CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC-EEEEeCcCCCCCHHHHHH
Q 000505 1308 QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR-ILVLDEATASIDTATDNV 1382 (1458)
Q Consensus 1308 ~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~-ILlLDEaTsslD~~Td~~ 1382 (1458)
+.+++ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||+.+...
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~ 940 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Confidence 23443 3567777777754 36889998888999999999999999999997 999999999999999999
Q ss_pred HHHHHHHh-cCCcEEEEEecChhhh--hhcCEEEEEeCC-EEEEecChh
Q 000505 1383 IQQTIREE-TSRCTVITVAHRIPTV--IDNDLVLVLDEG-KVLEYDSPR 1427 (1458)
Q Consensus 1383 Iq~~I~~~-~~~~TVI~IAHrl~ti--~~~DrVlvL~~G-~ivE~g~p~ 1427 (1458)
|++.|++. .+++|||+++|++++. ..||+|++|++| +++++|++.
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 99999986 4689999999999974 469999999997 999999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-65 Score=636.88 Aligned_cols=442 Identities=22% Similarity=0.349 Sum_probs=335.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC--CCCcEEEECC-------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~~i~~~g------- 659 (1458)
.++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 5899999999953 368999 999999999999999999999999999999986 79987 6665
Q ss_pred -------EEEEEcCCCCCCC-CcHHHHHhcCCCC------CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 -------~~ayv~Q~~~i~~-~Ti~enI~fg~~~------~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++... +.+..++.++ +-++.+. -.........+|||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~--l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQLK--LDINPATPVGNLGLGQ 148 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHH-----HHHHHcC--CCCCcccchhhCCHHH
Confidence 2799999987654 6999999987532 1111111111 1112221 1112345677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1458)
||||+||||+..+|+++||||||++||+.....+.+ ++..+ .+++|+|++|||++++.. ||+|++|++|+++..|+.
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 999999999999999999999999999999888776 45444 357899999999999875 999999999999877654
Q ss_pred hhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHH
Q 000505 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAF 883 (1458)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y 883 (1458)
+++... + ..
T Consensus 228 ~~~~~~---~---~~----------------------------------------------------------------- 236 (506)
T PRK13549 228 AGMTED---D---II----------------------------------------------------------------- 236 (506)
T ss_pred ccCCHH---H---HH-----------------------------------------------------------------
Confidence 332110 0 00
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 884 ITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963 (1458)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 963 (1458)
...
T Consensus 237 -~~~---------------------------------------------------------------------------- 239 (506)
T PRK13549 237 -TMM---------------------------------------------------------------------------- 239 (506)
T ss_pred -HHh----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000505 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY 1043 (1458)
Q Consensus 964 ~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~ 1043 (1458)
T Consensus 240 -------------------------------------------------------------------------------- 239 (506)
T PRK13549 240 -------------------------------------------------------------------------------- 239 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000505 1044 QAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1123 (1458)
Q Consensus 1044 ~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1123 (1458)
+ +
T Consensus 240 ---~-----------------------------------~---------------------------------------- 241 (506)
T PRK13549 240 ---V-----------------------------------G---------------------------------------- 241 (506)
T ss_pred ---h-----------------------------------C----------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCC
Q 000505 1124 AFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP 1203 (1458)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1203 (1458)
. .. .+ ..|.++ ++ +
T Consensus 242 -------------~-~~------------------------------------~~-----~~~~~~--------~~---~ 255 (506)
T PRK13549 242 -------------R-EL------------------------------------TA-----LYPREP--------HT---I 255 (506)
T ss_pred -------------c-Cc------------------------------------cc-----cccccc--------cC---C
Confidence 0 00 00 000000 00 1
Q ss_pred CCccEEEEeeeEEeCC-CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEEcCeeCCCCCH-HH
Q 000505 1204 SSGKIELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGRILIDGVDISMIGL-QD 1280 (1458)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~-~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-p~~G~I~IDG~dI~~i~l-~~ 1280 (1458)
....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+. +.
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 1124899999999952 22359999999999999999999999999999999999998 599999999999875543 45
Q ss_pred HhcceEEEccCC---CCcc-ccHHHhcCcC--CC------CCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1281 LRSRLSIIPQDP---MLFQ-GTVRTNLDPL--EQ------HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1281 LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
.|.+++|+||+| .+|. -|+.+|+... .. .+. +++.++++.+++.+ ...|.++ ..
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~ 405 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELAI----AR 405 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCccccc----cc
Confidence 678899999997 3665 5999999631 11 111 23556666665521 1123334 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|+++.
T Consensus 406 LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 47899999999999866 99999999999999
Q ss_pred ecChhHHh
Q 000505 1423 YDSPRQLL 1430 (1458)
Q Consensus 1423 ~g~p~~Ll 1430 (1458)
.|+++++.
T Consensus 486 ~~~~~~~~ 493 (506)
T PRK13549 486 DLINHNLT 493 (506)
T ss_pred EeccccCC
Confidence 99988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-65 Score=637.04 Aligned_cols=436 Identities=21% Similarity=0.313 Sum_probs=333.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999953 357899 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCCCCC-CcHHHHHhcCCCC----------CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCC
Q 000505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~enI~fg~~~----------~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~ 719 (1458)
.++|++|++.++. .|++||+.++... +.. +.+++++.+++. ...+....
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-----------VDLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-----------CCcccchh
Confidence 3799999987654 5999999886421 111 112222222221 12345667
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
+|||||||||+||||++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999888776 44443 347999999999999875 999999999999
Q ss_pred EEcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchH
Q 000505 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKW 877 (1458)
Q Consensus 798 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 877 (1458)
++.|+++++... +... .
T Consensus 224 ~~~g~~~~~~~~------~~~~------------------------------~--------------------------- 240 (510)
T PRK09700 224 VCSGMVSDVSND------DIVR------------------------------L--------------------------- 240 (510)
T ss_pred eeecchhhCCHH------HHHH------------------------------H---------------------------
Confidence 988776554320 0000 0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIK 957 (1458)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~ 957 (1458)
..+.
T Consensus 241 ---------~~~~------------------------------------------------------------------- 244 (510)
T PRK09700 241 ---------MVGR------------------------------------------------------------------- 244 (510)
T ss_pred ---------hcCC-------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000505 958 TAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVIL 1037 (1458)
Q Consensus 958 ~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~ 1037 (1458)
+
T Consensus 245 ----------------~--------------------------------------------------------------- 245 (510)
T PRK09700 245 ----------------E--------------------------------------------------------------- 245 (510)
T ss_pred ----------------C---------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 000505 1038 GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRI 1117 (1458)
Q Consensus 1038 ~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1117 (1458)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCC
Q 000505 1118 NLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSR 1197 (1458)
Q Consensus 1118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~ 1197 (1458)
.. .+ + +...+ ...
T Consensus 246 ----------------------~~-----------------------------------~~---~---~~~~~----~~~ 258 (510)
T PRK09700 246 ----------------------LQ-----------------------------------NR---F---NAMKE----NVS 258 (510)
T ss_pred ----------------------cc-----------------------------------cc---c---ccccc----ccc
Confidence 00 00 0 00000 000
Q ss_pred CCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC
Q 000505 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277 (1458)
Q Consensus 1198 ~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~ 1277 (1458)
++ +....|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 259 ~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 259 NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331 (510)
T ss_pred cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence 00 0112599999998763 2899999999999999999999999999999999999999999999999987654
Q ss_pred H-HHHhcceEEEccCC---CCccc-cHHHhcCcCCC------------CC----HHHHHHHHHHcCcHHHHHhcccccCc
Q 000505 1278 L-QDLRSRLSIIPQDP---MLFQG-TVRTNLDPLEQ------------HS----DQEIWEVINKCHLAEIVRQDQRLLDA 1336 (1458)
Q Consensus 1278 l-~~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----deeI~~aL~~~~L~~~i~~lp~gLdt 1336 (1458)
. ..+|++++|+||++ .+|.+ |+++|+..... .. .+++.++++..++. ++..+.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~ 405 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQ 405 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccC
Confidence 3 45788999999984 57765 99999864211 01 12345556665542 022344
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEE
Q 000505 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLV 1414 (1458)
Q Consensus 1337 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlv 1414 (1458)
++ ..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++
T Consensus 406 ~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 406 NI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV 481 (510)
T ss_pred cc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence 44 4599999999999999999999999999999999999999999998753 47899999999998865 999999
Q ss_pred EeCCEEEEecChhH
Q 000505 1415 LDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1415 L~~G~ivE~g~p~~ 1428 (1458)
|++|++++.+++.+
T Consensus 482 l~~G~i~~~~~~~~ 495 (510)
T PRK09700 482 FCEGRLTQILTNRD 495 (510)
T ss_pred EECCEEEEEecCcc
Confidence 99999999887633
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=635.56 Aligned_cols=219 Identities=26% Similarity=0.428 Sum_probs=179.0
Q ss_pred cEEEEeeeEEeCC---CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEc-Ce---eCCCCC--
Q 000505 1207 KIELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID-GV---DISMIG-- 1277 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~---~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID-G~---dI~~i~-- 1277 (1458)
.++++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22469999999999999999999999999999999999999999999996 64 344332
Q ss_pred -HHHHhcceEEEccCCCCccc-cHHHhcCc-CC-CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1278 -LQDLRSRLSIIPQDPMLFQG-TVRTNLDP-LE-QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1278 -l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~-~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
...+|++++|+||++.+|.. |+++|+.. .. .. .++++.++++.+++.+.- .++-++.++ ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHH
Confidence 23567889999999988875 99999952 11 11 123466677777764210 000123344 4699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p 1426 (1458)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998764 36899999999999876 999999999999999999
Q ss_pred hHHhh
Q 000505 1427 RQLLE 1431 (1458)
Q Consensus 1427 ~~Ll~ 1431 (1458)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-64 Score=631.11 Aligned_cols=201 Identities=18% Similarity=0.321 Sum_probs=173.4
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEccCCC--Ccc-ccHHHhcCcCC--CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1286 SIIPQDPM--LFQ-GTVRTNLDPLE--QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1286 ~iIpQdp~--LF~-gTIR~NLdp~~--~~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+|+||++. ++. .|+++|+..+. ...++++.++|+..++. +. .|.++ ..||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~----~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD-------IKKSV----KVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-------hcCcc----cccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986432 23456678888888873 32 23333 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQLLED 1432 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv-E~g~p~~Ll~~ 1432 (1458)
+++|+||||||||++||+.+...+.+.|++. ++|||+|||+++.+.. ||+|++|++|+++ +.|++.++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999875 4699999999999876 9999999999998 77999988754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=628.56 Aligned_cols=431 Identities=23% Similarity=0.364 Sum_probs=331.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4889999999953 357999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCCCC-CCcHHHHHhcCCCC-------CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~enI~fg~~~-------~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++|++|++.++ ..|++||+.++... +.. +.+++++.+++. ........+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-----------FSSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCC
Confidence 379999998665 46999999987432 111 112222222221 11245667999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1458)
||||||++||||+..+|+++||||||++||+.+...+.+ .+..+ ..++|+|++|||++++.. ||+|++|++|+++..
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999888765 44443 347899999999999865 999999999999876
Q ss_pred ccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHH
Q 000505 801 GKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVY 880 (1458)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 880 (1458)
|+.+++..+ + .. +
T Consensus 223 ~~~~~~~~~---~---~~-------------------------------~------------------------------ 235 (501)
T PRK10762 223 REVADLTED---S---LI-------------------------------E------------------------------ 235 (501)
T ss_pred cCcCcCCHH---H---HH-------------------------------H------------------------------
Confidence 654332110 0 00 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 881 SAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960 (1458)
Q Consensus 881 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 960 (1458)
.. +.
T Consensus 236 -----~~-----------------------------~~------------------------------------------ 239 (501)
T PRK10762 236 -----MM-----------------------------VG------------------------------------------ 239 (501)
T ss_pred -----Hh-----------------------------cC------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000505 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGIS 1040 (1458)
Q Consensus 961 ~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~ 1040 (1458)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 000505 1041 IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1120 (1458)
Q Consensus 1041 ~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1120 (1458)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCC
Q 000505 1121 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSP 1200 (1458)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1200 (1458)
. +.. ..++..+ ++
T Consensus 240 ----------------~----------------------------------------~~~---~~~~~~~-------~~- 252 (501)
T PRK10762 240 ----------------R----------------------------------------KLE---DQYPRLD-------KA- 252 (501)
T ss_pred ----------------C----------------------------------------Ccc---ccccccc-------cC-
Confidence 0 000 0000000 00
Q ss_pred CCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH-H
Q 000505 1201 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-Q 1279 (1458)
Q Consensus 1201 ~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~ 1279 (1458)
|..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +
T Consensus 253 --~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 253 --PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred --CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 1112489999984 27999999999999999999999999999999999999999999999999987665 3
Q ss_pred HHhcceEEEccCC---CCcc-ccHHHhcCcCC-----C----CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1280 DLRSRLSIIPQDP---MLFQ-GTVRTNLDPLE-----Q----HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp---~LF~-gTIR~NLdp~~-----~----~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
.+|++++|+||+| .+|. -|+++|+.... . .+ ++++.++++.+++.+ ...|.++
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---- 393 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQAI---- 393 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCch----
Confidence 4678899999997 3554 59999996310 0 11 223555666665520 1233444
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
..||||||||++|||||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 4699999999999999999999999999999999999999999999864 47899999999999865 999999999999
Q ss_pred EEecChhHHh
Q 000505 1421 LEYDSPRQLL 1430 (1458)
Q Consensus 1421 vE~g~p~~Ll 1430 (1458)
++.|+++++.
T Consensus 474 ~~~~~~~~~~ 483 (501)
T PRK10762 474 SGEFTREQAT 483 (501)
T ss_pred EEEeccccCC
Confidence 9999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=614.20 Aligned_cols=539 Identities=18% Similarity=0.220 Sum_probs=423.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1458)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1458)
+..++.+++.++...+..++..++..+.|++++.+++.+.+... ... ...++.++++..++..++.....+...+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSV-LKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777788888888889999999887654322 111 122222233333444444444445566778
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 347 ~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
.++...+...+|+|.++++.. .++.|+++|.++.|++++.++.. .+..++..++.+++.+.+++.. +|+.+++.+
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~l 172 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888889999999887653 33899999999999999998654 4455666667777776666643 436666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1458)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~ 502 (1458)
+++++...+...+.+..++..++.++..++..+...|.++|++.||.+++|+.+.++.++.-++-.+...+.....+...
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677788888888999999999999999999999999999999998888877664443333333332222222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000505 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1458)
Q Consensus 503 ~~~~~~p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1458)
.+..... ..+.++.++.+....+.++.+.+..++.++..+..|+..+...+..+.+++.+++|+.++++.++..+...
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 2211111 22334556667677788999999999999999999999999999999999999999999998665221111
Q ss_pred CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC
Q 000505 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1458)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g 659 (1458)
. +.......|+++|++|+|++. ..+.|+| |+++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 333 ~-~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 404 (582)
T PRK11176 333 R-VIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDG 404 (582)
T ss_pred c-CCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECC
Confidence 1 111123469999999999753 3578999 99999999999999999999999999999999999997 7877
Q ss_pred E-------------EEEEcCCCCCCCCcHHHHHhcCCC--CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 K-------------KAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 ~-------------~ayv~Q~~~i~~~Ti~enI~fg~~--~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
. ++||||+|.++++||+|||.+|.+ +++++++++++.++++++++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 3 699999999999999999999863 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||++||||++++|+|++|||||||||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999888764 55555789999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHH
Q 000505 805 DLIADQNSELVRQMK 819 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1458)
++++ .+..+.++..
T Consensus 564 ~l~~-~~~~y~~l~~ 577 (582)
T PRK11176 564 ELLA-QNGVYAQLHK 577 (582)
T ss_pred HHHh-CCChHHHHHH
Confidence 9998 5566776654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=627.11 Aligned_cols=445 Identities=22% Similarity=0.365 Sum_probs=338.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999987 6765
Q ss_pred -----EEEEEcCCCCCCC-CcHHHHHhcCCCCCH---HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~enI~fg~~~~~---~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++. .|++||+.++..... ++.+++++..++.. ....+..+|||||||||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHH
Confidence 2789999987655 599999999754321 22333344333321 224566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
|||||+.+|+++||||||++||+.....+.+. +..+ .+++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998888764 4443 357999999999999865 99999999999999888776643
Q ss_pred hcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhh
Q 000505 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVY 888 (1458)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~ 888 (1458)
+. ..+... . . ... .. . +
T Consensus 230 ~~---~~~~~~------~-----------------------~----~~~----~~-~----~------------------ 246 (510)
T PRK15439 230 DD---IIQAIT------P-----------------------A----ARE----KS-L----S------------------ 246 (510)
T ss_pred HH---HHHHHh------C-----------------------c----ccc----cc-c----c------------------
Confidence 10 000000 0 0 000 00 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 889 KGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMIT 968 (1458)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 968 (1458)
.
T Consensus 247 -------------------------------~------------------------------------------------ 247 (510)
T PRK15439 247 -------------------------------A------------------------------------------------ 247 (510)
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred HHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000505 969 SVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYI 1048 (1458)
Q Consensus 969 ~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~ 1048 (1458)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 000505 1049 TTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV 1128 (1458)
Q Consensus 1049 ~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1128 (1458)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccE
Q 000505 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1458)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1208 (1458)
.++. . ...|...+ .++ +..-.|
T Consensus 248 -----------------------------------------------~~~~-~-~~~~~~~~------~~~---~~~~~l 269 (510)
T PRK15439 248 -----------------------------------------------SQKL-W-LELPGNRR------QQA---AGAPVL 269 (510)
T ss_pred -----------------------------------------------cccc-c-cccccccc------ccC---CCCceE
Confidence 0000 0 00000000 000 011248
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-HhcceEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSI 1287 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~i 1287 (1458)
+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|.+++|
T Consensus 270 ~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 342 (510)
T PRK15439 270 TVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY 342 (510)
T ss_pred EEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence 9999983 1699999999999999999999999999999999999999999999999998776654 5678999
Q ss_pred EccCC---CCccc-cHHHhcCcC-----CC--CC---HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1288 IPQDP---MLFQG-TVRTNLDPL-----EQ--HS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1288 IpQdp---~LF~g-TIR~NLdp~-----~~--~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
+||+| .+|.. |+++|+... .. .. ++++.++++..++. +...|.++ ..||||||||+
T Consensus 343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgG~kqrl 412 (510)
T PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA----RTLSGGNQQKV 412 (510)
T ss_pred CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc----ccCCcHHHHHH
Confidence 99996 36654 999998421 10 01 12344555555542 12234444 46999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+++..|+++++.+
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998753 47899999999999976 99999999999999999988764
Q ss_pred c
Q 000505 1432 D 1432 (1458)
Q Consensus 1432 ~ 1432 (1458)
+
T Consensus 493 ~ 493 (510)
T PRK15439 493 D 493 (510)
T ss_pred H
Confidence 3
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=612.05 Aligned_cols=538 Identities=19% Similarity=0.228 Sum_probs=430.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1458)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1458)
+.+++.+++.+++..++.++..++....|++++.+++..-.... ... -+.+++++++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSV-LWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999999999998885543222 111 122232333344444444444445566777
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 347 ~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
.++...+...+|+|.++.+.. ..+.|+++|.++.|++++.+++. .+..++...+.+++++++++. ++|+.+++.+
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~l 161 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 777788888888888876543 23899999999999999998764 455556555666666665554 4546666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1458)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~ 502 (1458)
+++++.+.+...+.+..++..++..+..+++.+.++|.++|++.||.++.|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778888999999999999999999999999999999999999999888888776655554444433333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000505 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1458)
Q Consensus 503 ~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1458)
.+...... .+.++.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 22222222 2334556777777889999999999999999999999999999999999999999999998765322111
Q ss_pred CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC
Q 000505 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1458)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g 659 (1458)
. +.......|+++|++|+|++. ..+.|++ |+++++||+++|+|+||||||||+++|+|.++|.+|++ .++|
T Consensus 322 ~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~g 393 (571)
T TIGR02203 322 R-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDG 393 (571)
T ss_pred C-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECC
Confidence 1 111123469999999999754 3578999 99999999999999999999999999999999999997 8887
Q ss_pred -------------EEEEEcCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~enI~fg~--~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++||||+|++|++|+||||.++. +.++++.+++++.|++++++..+|+|.+|.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 379999999999999999999996 48889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||++||||++++|+|++||||||+||+++++++.+. +....+++|+|+|||+.+.+..||+|++|++|++++.|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999988664 55566789999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHH
Q 000505 805 DLIADQNSELVRQM 818 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~ 818 (1458)
++++ .+..+.++.
T Consensus 553 ~l~~-~~~~~~~~~ 565 (571)
T TIGR02203 553 ELLA-RNGLYAQLH 565 (571)
T ss_pred HHHH-cCCHHHHHH
Confidence 9987 444555443
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=624.75 Aligned_cols=437 Identities=24% Similarity=0.362 Sum_probs=329.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC--CCCcEEEECC--------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~~i~~~g-------- 659 (1458)
++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 688999999953 358999 999999999999999999999999999999986 79986 6665
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCCC-------CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCC
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~~-------~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~L 721 (1458)
.++|++|++.++. .|++||+.++... +.+ +.+++++.+++... .......+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD----------NVTRPVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC----------cccCchhhC
Confidence 3799999987654 6999999987432 111 11222222222110 012346789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||+||||++.+|+++||||||++||+.+...+.+ ++..+ .+++|||++||+++++.. ||+|++|++|+++.
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999999999999999999888876 44443 357899999999999875 99999999999986
Q ss_pred cccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHH
Q 000505 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTV 879 (1458)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 879 (1458)
.|+.+++..+ .
T Consensus 222 ~~~~~~~~~~----------------------------------------~----------------------------- 232 (500)
T TIGR02633 222 TKDMSTMSED----------------------------------------D----------------------------- 232 (500)
T ss_pred ecCcccCCHH----------------------------------------H-----------------------------
Confidence 5432111000 0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959 (1458)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s 959 (1458)
.+...
T Consensus 233 ---~~~~~------------------------------------------------------------------------ 237 (500)
T TIGR02633 233 ---IITMM------------------------------------------------------------------------ 237 (500)
T ss_pred ---HHHHH------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000505 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGI 1039 (1458)
Q Consensus 960 ~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l 1039 (1458)
T Consensus 238 -------------------------------------------------------------------------------- 237 (500)
T TIGR02633 238 -------------------------------------------------------------------------------- 237 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000505 1040 SIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1119 (1458)
Q Consensus 1040 ~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1119 (1458)
+ +
T Consensus 238 -------~-----------------------------------~------------------------------------ 239 (500)
T TIGR02633 238 -------V-----------------------------------G------------------------------------ 239 (500)
T ss_pred -------h-----------------------------------C------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCC
Q 000505 1120 LFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1199 (1458)
Q Consensus 1120 l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~ 1199 (1458)
. .. ++ ..+.++ .+
T Consensus 240 -----------------~-~~------------------------------------~~-----~~~~~~-------~~- 252 (500)
T TIGR02633 240 -----------------R-EI------------------------------------TS-----LYPHEP-------HE- 252 (500)
T ss_pred -----------------c-cc------------------------------------cc-----cccccc-------cC-
Confidence 0 00 00 000000 00
Q ss_pred CCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEEcCeeCCCCC
Q 000505 1200 PEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGVDISMIG 1277 (1458)
Q Consensus 1200 ~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~dI~~i~ 1277 (1458)
+..-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+
T Consensus 253 ---~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 253 ---IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN 329 (500)
T ss_pred ---CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCC
Confidence 011248999999999432 23599999999999999999999999999999999999995 8999999999987544
Q ss_pred H-HHHhcceEEEccCC---CCcc-ccHHHhcCcCC-----C---CC----HHHHHHHHHHcCcHHHHHhcccccCccccC
Q 000505 1278 L-QDLRSRLSIIPQDP---MLFQ-GTVRTNLDPLE-----Q---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1458)
Q Consensus 1278 l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~~-----~---~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1458)
. ..+|++++++||++ .+|. -|+++|+.... . .. .+++.++++++++.+ ...|.++
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~-- 401 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI-- 401 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc--
Confidence 3 56788999999996 3665 49999996421 1 11 123556666665521 1134444
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCC
Q 000505 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEG 1418 (1458)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G 1418 (1458)
..||||||||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.. ||+|++|++|
T Consensus 402 --~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 402 --GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred --ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999888753 47899999999999976 9999999999
Q ss_pred EEEEecChhHH
Q 000505 1419 KVLEYDSPRQL 1429 (1458)
Q Consensus 1419 ~ivE~g~p~~L 1429 (1458)
+++...+..++
T Consensus 480 ~i~~~~~~~~~ 490 (500)
T TIGR02633 480 KLKGDFVNHAL 490 (500)
T ss_pred EEEEEEccccC
Confidence 99987765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=622.93 Aligned_cols=532 Identities=22% Similarity=0.267 Sum_probs=419.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1458)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1458)
..++.+++.++...++.++..++.++.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777788888899999999999999987643322 111 2233334444445555555555566777888
Q ss_pred HHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 348 ~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~--~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
++...+...+|+|.++++.. .+++|+++|.++ |++.+.++.... ..+...+. +++.+.+++. ++|+.+++.+
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~l~li~l 302 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVR-QNMLLFLLSL 302 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhHHHHHHHH
Confidence 88889999999999988653 349999999998 999999876432 22223333 3333333443 3435556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC---- 498 (1458)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~---- 498 (1458)
+++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+.....
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (708)
T TIGR01193 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677788888899999999999999999999999999999999999998888776554444333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-C
Q 000505 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-K 577 (1458)
Q Consensus 499 a~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~-~ 577 (1458)
++..++.... .+.++++|++.+..+.+|.+.++++..++..+..|+..+...+..+.+++++++|+.++++.+++. +
T Consensus 383 ~~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 383 AIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222 234566788888899999999999999999999999999999999999999999999999876522 1
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
.....+..+....|+++|++|+|+.+ .+.|+| |++|++|+.++|+|+||||||||+++|+|+++|++|++ .
T Consensus 461 ~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I-~ 532 (708)
T TIGR01193 461 KKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-L 532 (708)
T ss_pred cccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-E
Confidence 11111112223479999999999743 478999 99999999999999999999999999999999999997 8
Q ss_pred ECC-------------EEEEEcCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCC
Q 000505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~--~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~L 721 (1458)
++| .++||||+|++|++||+|||.+|. +.++++..++++.++++++++.+|+|.+|.+||+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 887 479999999999999999999983 46778889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcc
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1458)
|||||||++||||++++|+|+|||||||+||+++.+++.+.+ ... +++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988887754 443 689999999999999999999999999999999
Q ss_pred cchhhhhhcchHHHHHH
Q 000505 802 KYEDLIADQNSELVRQM 818 (1458)
Q Consensus 802 ~~~~l~~~~~~~~~~~~ 818 (1458)
+++|+++ .+..+.+++
T Consensus 691 ~~~~L~~-~~~~y~~l~ 706 (708)
T TIGR01193 691 SHDELLD-RNGFYASLI 706 (708)
T ss_pred CHHHHHh-cCCcHHHHh
Confidence 9999987 445555443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=607.16 Aligned_cols=538 Identities=20% Similarity=0.249 Sum_probs=413.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1458)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1458)
..++.+++.++...++.++..++..+.|+++..+++.+..... .+......+++++++..++..++.....+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888888899999999999999997643222 111111222333444444555555555666777888
Q ss_pred HHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000505 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1458)
Q Consensus 348 ~iR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~~~~-~~w~~plqi~~al~lL~~~lG~~a~l~gl~ 423 (1458)
++...+...+|+|.++.+. ...+.|+++|.++.|++++.+++.... .+....+.+++++.+++ .++|+.+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~ 173 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888889999888754 234899999999999999998765433 33333333333333333 345355555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000505 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA--- 500 (1458)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~--- 500 (1458)
++++.+.+.....+..++..++..+..++-.+...|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666677777777788888889999999999999999999999998887655433332222211111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000505 501 -IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1458)
Q Consensus 501 -~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1458)
...++.....++.++ .+.+ ...+.++.+.+++++.++..+..|+..++.....+.++++|.+||.++++.+++++..
T Consensus 254 ~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111112 2223 3567799999999999999999999999999999999999999999999865422111
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC
Q 000505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1458)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1458)
... ......|+++|++|+|+++ .+.|+| |+++++||+++|+|+||||||||+++|+|+++|++|++ .++
T Consensus 332 ~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~id 401 (592)
T PRK10790 332 DDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-RLD 401 (592)
T ss_pred Ccc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EEC
Confidence 111 1123469999999999743 468999 99999999999999999999999999999999999986 888
Q ss_pred CE-------------EEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 659 GK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 659 g~-------------~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
|. ++||||+|++|++||+|||.+|.+.++++.+++++.+++.++++.+|+|.+|.+|++|.+|||||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 73 79999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchh
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~ 805 (1458)
|||++||||++++|+|+|||||||+||+++++++.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++|
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~-~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ-ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999888865 4566667899999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHh
Q 000505 806 LIADQNSELVRQMKAH 821 (1458)
Q Consensus 806 l~~~~~~~~~~~~~~~ 821 (1458)
+++ .+..+.++...+
T Consensus 561 L~~-~~~~y~~l~~~~ 575 (592)
T PRK10790 561 LLA-AQGRYWQMYQLQ 575 (592)
T ss_pred HHh-CCCHHHHHHHHH
Confidence 998 567777766543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=618.99 Aligned_cols=433 Identities=23% Similarity=0.344 Sum_probs=329.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 5889999999963 358899 99999999999999999999999999999999999987 6654
Q ss_pred -----EEEEEcCCCCCCC-CcHHHHHhcCCC------CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~enI~fg~~------~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++|++|++.++. .|++||+.++.. .+.. +.+++++.+++. ........+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCH
Confidence 3799999987765 599999998642 1111 222233333321 112456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
|||||++||||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|+|||+++++.. ||+|++|++|+++..+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999998888764 4443 357999999999999865 9999999999987533
Q ss_pred cchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000505 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1458)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1458)
+..+... .+ +
T Consensus 223 ~~~~~~~----------------------------------------~~------------------~------------ 232 (501)
T PRK11288 223 DDMAQVD----------------------------------------RD------------------Q------------ 232 (501)
T ss_pred CccccCC----------------------------------------HH------------------H------------
Confidence 2100000 00 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1458)
Q Consensus 882 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1458)
+.... .
T Consensus 233 -~~~~~------------------------------~------------------------------------------- 238 (501)
T PRK11288 233 -LVQAM------------------------------V------------------------------------------- 238 (501)
T ss_pred -HHHHh------------------------------c-------------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000505 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1458)
Q Consensus 962 l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~ 1041 (1458)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK11288 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 000505 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLF 1121 (1458)
Q Consensus 1042 ~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1121 (1458)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK11288 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCC
Q 000505 1122 NFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPE 1201 (1458)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~ 1201 (1458)
.... ++. .+.++ .+
T Consensus 239 ---------------~~~~------------------------------------~~~-----~~~~~-------~~--- 252 (501)
T PRK11288 239 ---------------GREI------------------------------------GDI-----YGYRP-------RP--- 252 (501)
T ss_pred ---------------CCCc------------------------------------ccc-----ccccc-------cC---
Confidence 0000 000 00000 00
Q ss_pred CCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH-HH
Q 000505 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QD 1280 (1458)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~ 1280 (1458)
+....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.
T Consensus 253 -~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 325 (501)
T PRK11288 253 -LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325 (501)
T ss_pred -CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHH
Confidence 01124889999742 38999999999999999999999999999999999999999999999999875433 45
Q ss_pred HhcceEEEccCCC---Ccc-ccHHHhcCcCC--C-------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCC
Q 000505 1281 LRSRLSIIPQDPM---LFQ-GTVRTNLDPLE--Q-------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343 (1458)
Q Consensus 1281 LR~~i~iIpQdp~---LF~-gTIR~NLdp~~--~-------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~ 1343 (1458)
.|++++|+||+|. +|. .|+.+|+.... . .. ++++.+.++.+++. ++..++++ .
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~ 395 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLI----M 395 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCcc----c
Confidence 6789999999973 554 69999986321 0 01 12355666666552 11234444 4
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000505 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421 (1458)
Q Consensus 1344 nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv 1421 (1458)
+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+++
T Consensus 396 ~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~ 475 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475 (501)
T ss_pred cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE
Confidence 699999999999999999999999999999999999999999998754 47899999999999965 9999999999999
Q ss_pred EecChhHHh
Q 000505 1422 EYDSPRQLL 1430 (1458)
Q Consensus 1422 E~g~p~~Ll 1430 (1458)
+.|++.+..
T Consensus 476 ~~~~~~~~~ 484 (501)
T PRK11288 476 GELAREQAT 484 (501)
T ss_pred EEEccccCC
Confidence 999987755
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=640.73 Aligned_cols=216 Identities=17% Similarity=0.200 Sum_probs=187.9
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcc
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1458)
...|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ ..++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34599999999997533469999999999999999999999999999999999999999999999999975 46678899
Q ss_pred eEEEccCCCCccc-cHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
|||+||++.++.. |+||||..+ ...+. +.+.+.++.++|.++.. ..+ ..||||||||+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-------k~~----~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-------RLA----GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-------CCh----hhCCHHHHHHHHHH
Confidence 9999999998875 999999642 12222 33556788888876543 333 35999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||+.+|+||+|||||++||+.+.+.+++.|++. .+++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999885 357999999999999976 999999999999999999999754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=603.76 Aligned_cols=471 Identities=17% Similarity=0.201 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHH
Q 000505 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1458)
Q Consensus 933 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1012 (1458)
++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++.++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3333334445667788888889999999999999999999999999999999999999999999987654 466777888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcch---HHHH
Q 000505 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---NRFL 1089 (1458)
Q Consensus 1013 ~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e---~~f~ 1089 (1458)
+.+++.+++++..+|.++++++..+++.+++..++.+..+...+......+.+.+++.|.++|+.+++ ++.+ +.+.
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~ 211 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFE 211 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHH
Confidence 88888888999999999888777776666666666666666666667788899999999999999995 5443 3555
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHhhc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF-FLVLIILVTLP-RSAIDPSLAGLAATYGLNLNVLQAWVIWNLC 1167 (1458)
Q Consensus 1090 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~ 1167 (1458)
+++.+..++..+...... ++......+..+.. ....++++... .+....+..+....+.+.+...+..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~ 287 (547)
T PRK10522 212 NEYEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALP 287 (547)
T ss_pred HHHhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544333322 11111111111111 11111111110 1112233333333444445556777778888
Q ss_pred HHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCC
Q 000505 1168 NVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1247 (1458)
Q Consensus 1168 ~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSG 1247 (1458)
++.....+.+|+.++.+.|.|++. +...+. |..+.|+++||+|+|+++ +++|+|+||+|++||++||||+||||
T Consensus 288 ~~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsG 361 (547)
T PRK10522 288 TLLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSG 361 (547)
T ss_pred HHHHHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCC
Confidence 899999999999998765543211 111111 223579999999999743 46999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHH
Q 000505 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327 (1458)
Q Consensus 1248 KSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i 1327 (1458)
||||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+
T Consensus 362 KSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~ 438 (547)
T PRK10522 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKL 438 (547)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999 2467888999999999988766
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh
Q 000505 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1405 (1458)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~t 1405 (1458)
.. ++|. .+|.+||||||||++||||++++|+||+||||||+||+++++.|.+.+.+.. +++|+|+||||+++
T Consensus 439 ~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 439 EL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred hc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 42 4332 1478999999999999999999999999999999999999999999987654 47999999999999
Q ss_pred hhhcCEEEEEeCCEEEEec
Q 000505 1406 VIDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1406 i~~~DrVlvL~~G~ivE~g 1424 (1458)
+..||+|++|++|+++|.+
T Consensus 513 ~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 513 FIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHhCCEEEEEECCEEEEec
Confidence 9999999999999999883
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=614.10 Aligned_cols=433 Identities=21% Similarity=0.321 Sum_probs=323.9
Q ss_pred eeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------------
Q 000505 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1458)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------------- 659 (1458)
+|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 567787753 368899 99999999999999999999999999999999999987 6665
Q ss_pred -EEEEEcCCCCCC-CCcHHHHHhcCCC-C-----CHHH-HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 -KKAYVPQSSWIQ-TGTIRENILFGKD-M-----RQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -~~ayv~Q~~~i~-~~Ti~enI~fg~~-~-----~~~~-y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++ +.|++||+.++.. . +... .+++.+ -++.+ |-.........+|||||||||+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~l~~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA------IFDEL--DIDIDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHH------HHHHc--CCCCCccCchhhCCHHHHHHHH
Confidence 379999998764 5699999998642 1 1111 111111 11111 1112234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
||||++.+|+++||||||++||+.+...+.+. +..+ ..++|+|++||+++++.. ||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999998888764 4443 357999999999999865 99999999999987765433210
Q ss_pred hcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhh
Q 000505 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVY 888 (1458)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~ 888 (1458)
. + ... . .
T Consensus 224 ~---~---~~~------------------------------~------------------------------------~- 230 (491)
T PRK10982 224 D---K---IIA------------------------------M------------------------------------M- 230 (491)
T ss_pred H---H---HHH------------------------------H------------------------------------H-
Confidence 0 0 000 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 889 KGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMIT 968 (1458)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 968 (1458)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000505 969 SVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYI 1048 (1458)
Q Consensus 969 ~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~ 1048 (1458)
+
T Consensus 231 ------------------------------------------------------------------------------~- 231 (491)
T PRK10982 231 ------------------------------------------------------------------------------V- 231 (491)
T ss_pred ------------------------------------------------------------------------------h-
Confidence 0
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 000505 1049 TTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV 1128 (1458)
Q Consensus 1049 ~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1128 (1458)
+
T Consensus 232 ----------------------------------~--------------------------------------------- 232 (491)
T PRK10982 232 ----------------------------------G--------------------------------------------- 232 (491)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccE
Q 000505 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1458)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1208 (1458)
. . + .+ ..+.+. .+ +....|
T Consensus 233 --------~-~---------------------------------~---~~-----~~~~~~-------~~----~~~~~i 251 (491)
T PRK10982 233 --------R-S---------------------------------L---TQ-----RFPDKE-------NK----PGEVIL 251 (491)
T ss_pred --------C-C---------------------------------c---cc-----cccccc-------CC----CCCcEE
Confidence 0 0 0 00 000000 00 112258
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH-HHhcceEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSI 1287 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~i~i 1287 (1458)
+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|
T Consensus 252 ~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 252 EVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 999999875 2489999999999999999999999999999999999999999999999999877654 45788999
Q ss_pred EccCCC---Cccc-cHHHh-----cCcC----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1288 IPQDPM---LFQG-TVRTN-----LDPL----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1288 IpQdp~---LF~g-TIR~N-----Ldp~----~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
+||++. +|.. |+++| +... +..+. +++.+.++..++. .+.+|.++ ..||||||
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgGq~ 397 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRTQI----GSLSGGNQ 397 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCccccc----ccCCcHHH
Confidence 999963 5653 67666 3211 11121 2234444444432 11234444 46999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||++||||++++|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|+++..+++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997743 47899999999999865 99999999999998887654
Q ss_pred Hh
Q 000505 1429 LL 1430 (1458)
Q Consensus 1429 Ll 1430 (1458)
+.
T Consensus 478 ~~ 479 (491)
T PRK10982 478 TT 479 (491)
T ss_pred CC
Confidence 43
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=656.78 Aligned_cols=474 Identities=19% Similarity=0.215 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...+.+....+...+++++++.|..++++..+|+++||+++|++.++... ..+..++...+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45677777778889999999999999999999999999999999999875 44555555555544444433221101111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
+.++++++++.+..++.+..+..++.....+....+.++|.++|+++||+|++|+.+.+++.+..++..+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333445555666666667777778899999999999999999999999999888776665554443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
+..........+ +.++.+.......+.++++.+..++++...+...+..+...+..+.+...|.+|+.++.+.+++.+.
T Consensus 525 ~~~~~~~~~~~~-~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPVV-VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 322221111111 1111122222336678888888888888888888888888889999999999999999976544211
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1270 (1458)
. .++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ---~-~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 ---Q-NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred ---c-cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 111 11234579999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
.+|++++||||+|.+|+|||||||....++++++++++++.|++.+.++.+|+|+||.|||+|.|||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++||||++++|+|++||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999977 5567766789999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHH
Q 000505 1430 LEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1430 l~~~~s~F~~l~~~~~ 1445 (1458)
++ +++.|++++++..
T Consensus 827 ~~-~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SK-SGSLFKKLMENAG 841 (1495)
T ss_pred Hh-cchhHHHHHHhcc
Confidence 96 5688999987654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-62 Score=612.74 Aligned_cols=483 Identities=22% Similarity=0.309 Sum_probs=332.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC--CEEEEEc
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVP 665 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~--g~~ayv~ 665 (1458)
..++++|++++|+.+ .+.+++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .++ ..++||+
T Consensus 5 ~~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLP 76 (556)
T ss_pred EEEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEe
Confidence 358999999999621 468999 99999999999999999999999999999999999997 654 4699999
Q ss_pred CCCCCCC-CcHHHHHhcCCC-CCH--H---------------------HHHHHHHHhh------hhhhHHhh-cCCCccc
Q 000505 666 QSSWIQT-GTIRENILFGKD-MRQ--S---------------------FYEEVLEGCA------LNQDIEMW-ADGDLSV 713 (1458)
Q Consensus 666 Q~~~i~~-~Ti~enI~fg~~-~~~--~---------------------~y~~vl~~c~------l~~dl~~l-~~gd~t~ 713 (1458)
|+|+++. .|++||+.++.. +.. . .+.++.+.+. ..+.++.+ ..-....
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 9998865 599999988631 000 0 0111111110 01111111 0000112
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEE
Q 000505 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1458)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l 792 (1458)
...+..+|||||||||+||||++.+|+++|||||||+||+.+..++.+ ++..+ ++|+|+|||+++++.. ||+|++|
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 355678999999999999999999999999999999999999877764 55544 3699999999999876 9999999
Q ss_pred eCCeEE-EcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhh
Q 000505 793 KDGKIE-QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTE 871 (1458)
Q Consensus 793 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 871 (1458)
++|+++ +.|+|+++.+.............+. .+ .
T Consensus 234 ~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~-------------------~- 268 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAA-------------------------RQ-------------------K- 268 (556)
T ss_pred eCCEEEEecCCHHHHHHHHHHHHHHHHHHHHH-------------------------HH-------------------H-
Confidence 999986 8899988765211111000000000 00 0
Q ss_pred cCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 872 LGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951 (1458)
Q Consensus 872 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1458)
-+..... |.
T Consensus 269 -----------~~~~~~~-----------------------~~------------------------------------- 277 (556)
T PRK11819 269 -----------ALKRELE-----------------------WV------------------------------------- 277 (556)
T ss_pred -----------HHHHHHH-----------------------HH-------------------------------------
Confidence 0000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
T Consensus 278 -------------------------------------------------------------------------------- 277 (556)
T PRK11819 278 -------------------------------------------------------------------------------- 277 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
++ ++. + + ..
T Consensus 278 -----------------------~~------~~~---------~----~----~~------------------------- 286 (556)
T PRK11819 278 -----------------------RQ------SPK---------A----R----QA------------------------- 286 (556)
T ss_pred -----------------------HH------hhh---------h----h----HH-------------------------
Confidence 00 000 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
..+......+|..+. .+.+.+.
T Consensus 287 --------------------------------------------------------~~~~~~~~~~~~~~~--~~~~~~~ 308 (556)
T PRK11819 287 --------------------------------------------------------KSKARLARYEELLSE--EYQKRNE 308 (556)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhhcc--cccccCC
Confidence 000000000111110 0011000
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCe
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~ 1271 (1458)
......++...+.+..|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 385 (556)
T PRK11819 309 TNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE- 385 (556)
T ss_pred CceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 0000001111112335999999999964 3599999999999999999999999999999999999999999999964
Q ss_pred eCCCCCHHHHhcceEEEccCC-CCccc-cHHHhcCcCCC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1272 DISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLDPLEQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp-~LF~g-TIR~NLdp~~~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
++ +++|+||++ .++.. |+++|+..... ..+++..++++..++.+. .++..+ ..
T Consensus 386 ~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~ 445 (556)
T PRK11819 386 TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV----GV 445 (556)
T ss_pred ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch----hh
Confidence 21 699999997 56654 99999863211 123345566777666321 123334 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeC-CEEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-GKVLE 1422 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~-G~ivE 1422 (1458)
||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+
T Consensus 446 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence 9999999999999999999999999999999999999999999875 3 499999999998876 999999986 88875
Q ss_pred -ecChhHHhhc
Q 000505 1423 -YDSPRQLLED 1432 (1458)
Q Consensus 1423 -~g~p~~Ll~~ 1432 (1458)
.|++.+++++
T Consensus 524 ~~g~~~~~~~~ 534 (556)
T PRK11819 524 FEGNFQEYEED 534 (556)
T ss_pred ecCCHHHHHHH
Confidence 6788877754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-60 Score=601.06 Aligned_cols=541 Identities=19% Similarity=0.260 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1458)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1458)
++.+++.+++.+.+..++.++..++..+.|+++..+++.+-.... ... -..+++.+++..++..+......+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SGL--LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888889999999999999999997432221 111 11122222233333344444455667788
Q ss_pred HHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1458)
Q Consensus 346 g~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1458)
+.++...+...+|+|.++.+.. ..+.|+++|.++.|++.+.+++. .+..++...+.+++++++++..-. +.+++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 8899999999999999987543 23889999999999999988764 344444444445444444432222 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1458)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 501 (1458)
++.+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445567788888889999999999999999999999999999999988888877655444433332222221
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 000505 502 AFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1458)
Q Consensus 502 ~~~~~--~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~ 578 (1458)
..+.. .....+..+.++.+.+..+.++.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++ +..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 11111 112233445567777778899999999999999999999999999999999999999999999986542 111
Q ss_pred CCC-CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 579 ~~~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
... ....+....|+++|++|+|+.+ ..++.|+| |++++|||+++|+|+||||||||+++|+|+++|.+|++ .
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~ 398 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L 398 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-E
Confidence 111 1111123469999999999854 23578999 99999999999999999999999999999999999987 7
Q ss_pred ECC-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
++| .++||||+|+++++||+|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 877 4799999999999999999999875 46778888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEccc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1458)
||||||++||||++++|++++||||||+||+++++.+++ .+....+++|+|+|||+++.++.+|+|++|++|++++.|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 999999999999999999999999999999999877765 4556667999999999999999999999999999999999
Q ss_pred chhhhhhcchHHHHHH
Q 000505 803 YEDLIADQNSELVRQM 818 (1458)
Q Consensus 803 ~~~l~~~~~~~~~~~~ 818 (1458)
++++.+ .+..+.++.
T Consensus 558 ~~~l~~-~~~~~~~l~ 572 (576)
T TIGR02204 558 HAELIA-KGGLYARLA 572 (576)
T ss_pred HHHHHH-cCChHHHHH
Confidence 999887 555555544
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=654.06 Aligned_cols=473 Identities=19% Similarity=0.222 Sum_probs=374.2
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...+.+.-..+...+++++++.|..+++..++|+++|++++|++.++.... .+..++...+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778889999999999999999999999999999999998763 4555555555555544443332112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
+.++++++.+.++.++.+..+..++.....+....+.++|.++|+++||+|++|+.|.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334444555566666667777777788889999999999999999999999999887766654443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
+..........+ +.++.+.......+.++++.+..++++...+...+..+...+..+.+..+|.+|+.+|.+.+++.+.
T Consensus 525 ~~~~~~~~~~~~-v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPVL-VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 222211111111 1111122223346778888887777777777777778888899999999999999999976543211
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC-cEEEEc
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-GRILID 1269 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~-G~I~ID 1269 (1458)
..++ .-+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|.++|.+ |+|.+
T Consensus 604 ----~~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 ----PNPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ----cCCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 0111 11224579999999999753 3579999999999999999999999999999999999999999 89974
Q ss_pred CeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1270 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
|++++||||+|.+|+|||||||..+.++++++++++++.|+|.+.+..+|+|+||.|||+|.||||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 66899999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+++|.|+|++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999876 567877778999999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHHHHHH
Q 000505 1429 LLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1429 Ll~~~~s~F~~l~~~~~ 1445 (1458)
|++ +++.|++++++..
T Consensus 826 L~~-~~~~~~~l~~~~~ 841 (1622)
T PLN03130 826 LSN-NGPLFQKLMENAG 841 (1622)
T ss_pred HHh-cchhHHHHHHhcc
Confidence 996 5688999987654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=614.39 Aligned_cols=439 Identities=21% Similarity=0.297 Sum_probs=329.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. ...|++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD--------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC--------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 3789999999963 247999 99999999999999999999999999999999999987 5544
Q ss_pred ----EEEEEcCCCCC---------CCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 ----~~ayv~Q~~~i---------~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|++-. +..|++||+.++.. ++++.+++++..++.+. .+....+||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHH
Confidence 16899998643 14589999876532 23344455555544321 2356679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccch
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1458)
|||+||||+..+|+++||||||++||+...+.+.+. +..+ .+++|+|++||+++++.. ||+|++|++|+++..|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAEL-LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998888764 4444 347899999999999865 9999999999999888766
Q ss_pred hhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHHH
Q 000505 805 DLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFI 884 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 884 (1458)
++... . ....... .+ . .
T Consensus 221 ~~~~~-~-~~~~~~~-----------------------------~~----~--------~-------------------- 237 (490)
T PRK10938 221 EILQQ-A-LVAQLAH-----------------------------SE----Q--------L-------------------- 237 (490)
T ss_pred HHhcc-h-hhhhhhh-----------------------------hh----c--------c--------------------
Confidence 54320 0 0000000 00 0 0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 885 TLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFL 964 (1458)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 964 (1458)
. ..
T Consensus 238 ---------------------------------~-~~------------------------------------------- 240 (490)
T PRK10938 238 ---------------------------------E-GV------------------------------------------- 240 (490)
T ss_pred ---------------------------------C-cc-------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000505 965 NMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQ 1044 (1458)
Q Consensus 965 ~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~ 1044 (1458)
+
T Consensus 241 ---------~---------------------------------------------------------------------- 241 (490)
T PRK10938 241 ---------Q---------------------------------------------------------------------- 241 (490)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 000505 1045 AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1124 (1458)
Q Consensus 1045 ~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~ 1124 (1458)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCC
Q 000505 1125 FFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS 1204 (1458)
Q Consensus 1125 ~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1204 (1458)
.+ + ..++.. .. ..+ +.
T Consensus 242 ----------~~-----------------------------------------~-------~~~~~~--~~-~~~---~~ 257 (490)
T PRK10938 242 ----------LP-----------------------------------------E-------PDEPSA--RH-ALP---AN 257 (490)
T ss_pred ----------cC-----------------------------------------c-------cccccc--cc-ccC---CC
Confidence 00 0 000000 00 000 01
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEEcCeeCCC-CCHHHHh
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGVDISM-IGLQDLR 1282 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~dI~~-i~l~~LR 1282 (1458)
...|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.. ......|
T Consensus 258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 225999999999964 3599999999999999999999999999999999998876 69999999987632 2334578
Q ss_pred cceEEEccCCCCcc---ccHHHhcCcC--------CCCC---HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1283 SRLSIIPQDPMLFQ---GTVRTNLDPL--------EQHS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~---gTIR~NLdp~--------~~~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
++++|+||++.++. .|+++++.+. .... ++++.++++.+++.+. -+|.++ ..||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR------TADAPF----HSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh------hccCch----hhCCHH
Confidence 89999999986642 3677776421 1111 2356677888777531 123334 469999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh--cCEEEEEeCCEEEEec
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID--NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHrl~ti~~--~DrVlvL~~G~ivE~g 1424 (1458)
||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ + +|||+|||+++.+.. ||+|++|++|++++.-
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999999988643 3 479999999999974 7999999999998864
Q ss_pred C
Q 000505 1425 S 1425 (1458)
Q Consensus 1425 ~ 1425 (1458)
+
T Consensus 486 ~ 486 (490)
T PRK10938 486 Q 486 (490)
T ss_pred c
Confidence 3
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=610.69 Aligned_cols=481 Identities=22% Similarity=0.309 Sum_probs=332.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC--CEEEEEcC
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~--g~~ayv~Q 666 (1458)
.++++|++++|+.+ .+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++ ..++|++|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58899999999622 368999 99999999999999999999999999999999999987 665 46999999
Q ss_pred CCCCC-CCcHHHHHhcCCCC------------------CH---------HHHHHHHHHhhhh---hhHHhh-cCCCcccc
Q 000505 667 SSWIQ-TGTIRENILFGKDM------------------RQ---------SFYEEVLEGCALN---QDIEMW-ADGDLSVV 714 (1458)
Q Consensus 667 ~~~i~-~~Ti~enI~fg~~~------------------~~---------~~y~~vl~~c~l~---~dl~~l-~~gd~t~i 714 (1458)
+|+++ +.|++|||.++... +. .++.++++.++.. ..+..+ ..-.....
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 155 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW 155 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc
Confidence 99886 46999999886310 01 1123333334321 111111 10011123
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEe
Q 000505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1458)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~ 793 (1458)
+....+|||||||||+||||++.+|+++||||||++||+++..++.+ .+... ++|+|+|||+++++.. ||+|++|+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEE
Confidence 55678999999999999999999999999999999999999887765 45443 4699999999999876 99999999
Q ss_pred CCeEE-EcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhc
Q 000505 794 DGKIE-QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1458)
Q Consensus 794 ~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1458)
+|+++ +.|+++++.+...............
T Consensus 233 ~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 263 (552)
T TIGR03719 233 RGRGIPWEGNYSSWLEQKEKRLEQEEKEESA------------------------------------------------- 263 (552)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 99975 7899988865211111000000000
Q ss_pred CcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1458)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1458)
+...+.... -|+
T Consensus 264 -------~~~~~~~~~-----------------------~~~-------------------------------------- 275 (552)
T TIGR03719 264 -------RQKALKREL-----------------------EWV-------------------------------------- 275 (552)
T ss_pred -------HHHHHHHHH-----------------------HHH--------------------------------------
Confidence 000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1458)
Q Consensus 953 ~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v 1032 (1458)
T Consensus 276 -------------------------------------------------------------------------------- 275 (552)
T TIGR03719 276 -------------------------------------------------------------------------------- 275 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000505 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1458)
Q Consensus 1033 ~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1458)
.+ .+.. . ++ +.
T Consensus 276 ----------------------~~------~~~~---~---------~~---------~~-------------------- 286 (552)
T TIGR03719 276 ----------------------RS------SPKA---R---------QA---------KS-------------------- 286 (552)
T ss_pred ----------------------Hh------hhhh---H---------HH---------HH--------------------
Confidence 00 0000 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Q 000505 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1458)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1458)
+......++..+. . +..++..
T Consensus 287 ---------------------------------------------------------~~~~~~~~~~~~~-~-~~~~~~~ 307 (552)
T TIGR03719 287 ---------------------------------------------------------KARLARYEELLSQ-E-FQKRNET 307 (552)
T ss_pred ---------------------------------------------------------HHHHHHHHhhhhh-c-ccccCCC
Confidence 0000000111110 0 0000000
Q ss_pred cCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCee
Q 000505 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1458)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d 1272 (1458)
.....+...-+.+..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~ 384 (552)
T TIGR03719 308 AEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T 384 (552)
T ss_pred ceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c
Confidence 000000000011235999999999964 3599999999999999999999999999999999999999999999965 2
Q ss_pred CCCCCHHHHhcceEEEccCCC-Ccc-ccHHHhcCcCC---CC--CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1273 ISMIGLQDLRSRLSIIPQDPM-LFQ-GTVRTNLDPLE---QH--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1273 I~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~~---~~--sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
+ +++|+||++. ++. -|+++|+.... .. .+.+..++++..++.+. -.|.++ ..|
T Consensus 385 ~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~L 444 (552)
T TIGR03719 385 V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------DQQKKV----GQL 444 (552)
T ss_pred e----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------HhcCch----hhC
Confidence 1 6999999973 665 49999996421 11 13344566666665321 123333 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeC-CEEEEe
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-GKVLEY 1423 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~-G~ivE~ 1423 (1458)
|||||||++|||||+.+|++|+|||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++ |+++++
T Consensus 445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~ 522 (552)
T TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWF 522 (552)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEe
Confidence 999999999999999999999999999999999999999999986 3 499999999999876 999999997 688754
Q ss_pred -cChhHHhh
Q 000505 1424 -DSPRQLLE 1431 (1458)
Q Consensus 1424 -g~p~~Ll~ 1431 (1458)
|++.++.+
T Consensus 523 ~g~~~~~~~ 531 (552)
T TIGR03719 523 EGNYSEYEE 531 (552)
T ss_pred CCCHHHHHH
Confidence 67666654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=593.95 Aligned_cols=521 Identities=20% Similarity=0.232 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1458)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR 350 (1458)
+.+++.++...++.++..++..+.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888999999999999999986543221 111 2334444555556666666666777888999999
Q ss_pred HHHHHHHHHHhcccccCCCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000505 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1458)
Q Consensus 351 ~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~~~--~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~ 428 (1458)
..+...+|+|.++++.. ..+...+.+++|++++.+++.. +..+...++.++..+ +++. +.|+.+++.+++++++
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLL-VCFL-LHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHH-HhhHHHHHHHHHHHHH
Confidence 99999999999988763 3455677888999999987643 333444444443332 2322 2223334444433444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1458)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~ 508 (1458)
+.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777888888999999999999999999999999999999999988876665554444433333332222222
Q ss_pred H--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000505 509 P--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1458)
Q Consensus 509 p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1458)
. ..+.++.++.+...++.+|++.+++++.++..+..|+..++..+..+.++++|.+|+.++++.++..+.... ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCC
Confidence 1 123345677787788899999999999999999999999999999999999999999999976653221111 111
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 000505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1458)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------ 659 (1458)
.+..++++|++|+|++. ..+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 313 ~~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~ 385 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQW 385 (544)
T ss_pred CCCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhC
Confidence 23469999999999753 3578999 99999999999999999999999999999999999987 7776
Q ss_pred -------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHH
Q 000505 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1458)
Q Consensus 660 -------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1458)
.++||||+|+++++|++|||.++.+ .+++++.++++.+++++.++.+|+|.+|.+|++|.+||||||||++|
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 3799999999999999999986654 77888888999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
|||++++|+++|||||||+||+++++.+.+ .+.... +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999888866 455443 6899999999999888899999999999999999988864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=596.44 Aligned_cols=533 Identities=19% Similarity=0.261 Sum_probs=410.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1458)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~ 348 (1458)
.++.+++.+.+..++.++..++..+.|+++..+++.+..... . +. +++.+++..++..+......+...++..+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD---I--FP-LLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888999999999999999997754321 1 11 11111111222222222234456677788
Q ss_pred HHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000505 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1458)
+|..+...+|+|.++++.. ..+.|++++.++.|++.+.+... .+..+....+..++.+++++ .++|+.+++.+++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~l~~ 165 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL-FMNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8888899999999987543 33899999999999999876533 23333222222222222222 2343455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE----IERDSLKKYLYTCSA 500 (1458)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~----~El~~l~k~~~~~a~ 500 (1458)
+++...+...+.+..++.+++.++..++......|.++|++.||.|+.|+.+.+++.+.-+ .+.+..+.......+
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVL 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667778888889999999999999999999999999999999999987776655533 333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Q 000505 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-I 579 (1458)
Q Consensus 501 ~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~-~ 579 (1458)
..++ ..-..+.+++++.+.+..+.++.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..+++.+. .
T Consensus 246 ~~~~--~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 246 NRAA--STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 2211 112234456678888888899999999999999999999999999999999999999999999976542111 1
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC
Q 000505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1458)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1458)
...+....+..|+++|++|+|+++ .+.|+| |+++++|++++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~ 395 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LID 395 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111111223469999999999742 468999 99999999999999999999999999999999999986 787
Q ss_pred C-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 659 g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
| .++||||+|+++++||||||.++++ .++++.+++++.+++++.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 7 4799999999999999999999964 5677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||++||||++++|+|++||||||+||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|++.+.|+++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~-l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAA-LDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765 45555789999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHH
Q 000505 805 DLIADQNSELVRQMKA 820 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1458)
++++ ....+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (588)
T PRK13657 555 ELVA-RGGRFAALLRA 569 (588)
T ss_pred HHHH-CCChHHHHHHH
Confidence 9987 55667766653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=593.91 Aligned_cols=524 Identities=21% Similarity=0.264 Sum_probs=408.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000505 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1458)
Q Consensus 285 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~l 364 (1458)
++..++..+.|++++.+++.+..... .... .+.+++.+++..++..++.....+...+.+.++...+...+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHM-TTGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555667789999999997754321 1111 233344444444455555544455566778888888888999999987
Q ss_pred ccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 365 KFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1458)
Q Consensus 365 s~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~ 440 (1458)
+.. ..++|+++|.+++|++.+..... .+..++..++..++++++++..++|..+++.++++++.+.+...+.+...
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 34899999999999999986653 45566666666666655554456755666666666666666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 000505 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP--TLVSVITFG 518 (1458)
Q Consensus 441 ~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p--~~v~~~tF~ 518 (1458)
+..++..+..++..+...|.++|+++||.+++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999999998777766543332222222222222211111111 123344567
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000505 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1458)
Q Consensus 519 ~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1458)
.+.+.++.++.+.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+.... +....+..|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 777778899999999999999999999999999999999999999999999986542111111 1111234699999999
Q ss_pred EeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEEE
Q 000505 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYV 664 (1458)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ayv 664 (1458)
+|+.+ ..+.|++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|. ++||
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99753 3578999 99999999999999999999999999999999999997 77763 6999
Q ss_pred cCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000505 665 PQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1458)
Q Consensus 665 ~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~l 743 (1458)
+|+|+++++|++|||.+|.+ .++++++++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999964 67788899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHHHHHHH
Q 000505 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1458)
Q Consensus 744 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1458)
||||||+||+++.+++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++++ ....+.++...
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~ 549 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRY 549 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHH
Confidence 9999999999999888765 555567899999999999999999999999999999999999987 55566666544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=592.34 Aligned_cols=499 Identities=17% Similarity=0.205 Sum_probs=381.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVL-ASVFLFAKTVESLTQRQWYFGANRIG 346 (1458)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l-~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1458)
...+.+++.++...++.++..++..+.|++++.+++.+..... .. .+.+ ..++++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VL--YLSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888999999999999999987643221 11 1111 11111222333344333444556777
Q ss_pred HHHHHHHHHHHHHHhcccccCC---CCHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 347 IRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 347 ~~iR~~L~~~Iy~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~~~~-~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
.++...+...+|+|.++++... .++|+++|.++.|++++.+++... ..+....+.+++++++++. ++|..+++.+
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l 160 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 8888888899999999887642 389999999999999999886643 3344444444444444442 3334444444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1458)
Q Consensus 423 ~~~~i~~~~~~~~-~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 501 (1458)
+.++++..+...+ .+..++..++..+..++..+...|.++|+++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333233 344455667777888999999999999999999999999999999887666555555544444433
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000505 502 AFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1458)
Q Consensus 502 ~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1458)
..+...... .+.++.++.+.+.++.++.+.+.+++.+...+..|+..++..+..+.++++|.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 333222222 223345666777788899999999999999999999999999999999999999999999776521111
Q ss_pred C-C--CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEE
Q 000505 580 T-E--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1458)
Q Consensus 580 ~-~--~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i 655 (1458)
+ . .+.......|+++|++|+|+++ ++.|+| |+++++||+++|+||+|||||||+++|+|+++|++|++
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I- 392 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV- 392 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-
Confidence 1 0 0011123469999999999753 358999 99999999999999999999999999999999999997
Q ss_pred EECC------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 656 KVHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 656 ~~~g------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++| .++||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|.+|.+||+|.+||
T Consensus 393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 8888 6899999999999999999999865 57889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEeccc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 780 (1458)
||||||++||||++++|+|++|||||||||+++++.+.+. +....+++|+|+|||++
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999888775 45566789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=587.68 Aligned_cols=537 Identities=20% Similarity=0.248 Sum_probs=405.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1458)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1458)
..+.+++.+++..++.++..++..+.|.++..+++... .+.... ... .+..++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999998542 211000 011 111122233333444555555556677888
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 347 ~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
.++...+...+|+|.++++.. ...+|++++.++.|++++.+++.. +..+....+.+++++++++. +.|..++..+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 889999999999999988653 238999999999999999998754 44445455555544444442 3323334333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVM-VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1458)
Q Consensus 423 ~~~~i~~-~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 501 (1458)
+++++.. .+...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222 233455677778888888888999999999999999999999999988888776554444333333333322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000505 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1458)
Q Consensus 502 ~~~~~~~p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1458)
..+..... ..+.++.++.+. .++.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222111 122233455555 4677888887776665433 3568888999999999999999999999987542111
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEE
Q 000505 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1458)
Q Consensus 579 ~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~ 657 (1458)
....+.......|+++|++|+|+++ ..+.|+| |+++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223469999999999753 2478999 99999999999999999999999999999999999997 88
Q ss_pred CCE-------------EEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 658 HGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 658 ~g~-------------~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
+|. ++||+|+|+++++||+|||.+|.+ .++++..++++.++++++++. |+|.+|.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 873 699999999999999999999975 577888999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1458)
|||||++||||++++|++++||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999888866 45566678999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHH
Q 000505 804 EDLIADQNSELVRQM 818 (1458)
Q Consensus 804 ~~l~~~~~~~~~~~~ 818 (1458)
+|+++ .++.+.++.
T Consensus 558 ~~l~~-~~g~y~~l~ 571 (574)
T PRK11160 558 QELLA-QQGRYYQLK 571 (574)
T ss_pred HHHHh-cCcHHHHHH
Confidence 99997 566665544
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=538.92 Aligned_cols=457 Identities=27% Similarity=0.418 Sum_probs=344.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1458)
..++++|.+.++.... ......++ +|++.+||.+|+||++|||||-..++++|+++. -+|++ ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 4578888777776431 24567889 999999999999999999999999999999975 34554 5554
Q ss_pred --------------EEEEEcCCCCC-CC--CcHHHHHh----cCCCCCH----HHHHHHHHHhhhhhhHHhhcCCCcccc
Q 000505 660 --------------KKAYVPQSSWI-QT--GTIRENIL----FGKDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1458)
Q Consensus 660 --------------~~ayv~Q~~~i-~~--~Ti~enI~----fg~~~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~i 714 (1458)
+|++++|+|-- .| -||...|. ..+.... ++.-+.++..++.+ -...+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl 151 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRL 151 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhh
Confidence 58999999863 23 36655543 3333322 11122222222211 11234
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEE
Q 000505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1458)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~ 791 (1458)
....++|||||||||.||.||..+||++|-||||.|||..+..+|.+ +++.+. .|-.++++|||+..... ||+|+|
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 56788999999999999999999999999999999999999999986 455443 37899999999999986 999999
Q ss_pred EeCCeEEEcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhh
Q 000505 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTE 871 (1458)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 871 (1458)
|.+|++++.|+.+++...+...+.+.+-+
T Consensus 231 M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------- 259 (534)
T COG4172 231 MQHGEIVETGTTETLFAAPQHPYTRKLLA--------------------------------------------------- 259 (534)
T ss_pred EeccEEeecCcHHHHhhCCCChHHHHHHh---------------------------------------------------
Confidence 99999999998777765221111111000
Q ss_pred cCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 872 LGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951 (1458)
Q Consensus 872 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1458)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
.|+.
T Consensus 260 ---------------------------------------------------------------------------aeP~- 263 (534)
T COG4172 260 ---------------------------------------------------------------------------AEPS- 263 (534)
T ss_pred ---------------------------------------------------------------------------cCCC-
Confidence 0110
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCC---------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT---------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~ 1262 (1458)
...+|..-...--++.+||.+.|+-. .-.+.+||||+.++||.+||||+||||||||-.+|+|++++.
T Consensus 264 ---g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 264 ---GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ---CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 00111100111236677777776321 124789999999999999999999999999999999999876
Q ss_pred CcEEEEcCeeCCCCCHHH---HhcceEEEccCCC--Ccc-ccHHHhcC-------cC--CCCCHHHHHHHHHHcCcHHHH
Q 000505 1263 GGRILIDGVDISMIGLQD---LRSRLSIIPQDPM--LFQ-GTVRTNLD-------PL--EQHSDQEIWEVINKCHLAEIV 1327 (1458)
Q Consensus 1263 ~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF~-gTIR~NLd-------p~--~~~sdeeI~~aL~~~~L~~~i 1327 (1458)
|+|.++|.||...+.++ +|+++-+|.|||+ |=. -||-+-+. |. ....|+.+.+||+.+||+.-.
T Consensus 341 -G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~ 419 (534)
T COG4172 341 -GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT 419 (534)
T ss_pred -ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH
Confidence 99999999999988776 6899999999996 211 24444432 11 112356789999999997654
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh
Q 000505 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1405 (1458)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~t 1405 (1458)
... -...+|||||||++||||+.-+|++++||||||+||..-.++|.+.+++.. .+-+-++|+|++..
T Consensus 420 r~R----------YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V 489 (534)
T COG4172 420 RNR----------YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV 489 (534)
T ss_pred hhc----------CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 321 234699999999999999999999999999999999999999999998754 46799999999999
Q ss_pred hhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000505 1406 VID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1406 i~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l 1440 (1458)
++. ||+|+||.+|+|||+|+.+++++++...|.+-
T Consensus 490 vrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 490 VRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 976 99999999999999999999999998777543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=607.71 Aligned_cols=200 Identities=21% Similarity=0.336 Sum_probs=167.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEccCC--CCcc-ccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000505 1287 IIPQDP--MLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1458)
Q Consensus 1287 iIpQdp--~LF~-gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1458)
|+||++ .+.. .|+.+++... ....++++.+.|+..++.+. -.+.++ ..||||||||++|||+++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 3788876422 22345567778888877421 123344 46999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 000505 1363 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQLLE 1431 (1458)
Q Consensus 1363 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv-E~g~p~~Ll~ 1431 (1458)
|++|||||||++||..+...+.+.|++. +.|||+|||++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999885 4599999999999875 9999999999998 6788888753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=598.48 Aligned_cols=540 Identities=19% Similarity=0.227 Sum_probs=426.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1458)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1458)
++..++.+++.+....+..++..++.++.|++++.+++.+-.... ... -+.+++++++..++..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LST-LSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777888888888899999999999987643221 111 23334444445555556655566677788
Q ss_pred HHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1458)
Q Consensus 346 g~~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1458)
+.++...+...+|+|.++++.. .+++|+++|.+ .|++.+.+++. .+..+....+.+++.+++++. ++|+.+++.
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~ 284 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFF-YSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8999999999999999988653 34999999999 59999998764 333333333333444444443 343556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1458)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 501 (1458)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777888888888888999999999999999999999999999988888777555554444443333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000505 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1458)
Q Consensus 502 ~~~~~~~p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1458)
........ ..+.++.+|.+.+..+.++.+.++++..+...+..|+..+...+..+.+++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222222 1233456778877888999999999999999999999999999999999999999999999876522211
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC
Q 000505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1458)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1458)
...+....+..|+++|++|+|+++ ..+.|++ |+++++||+++|+|+||||||||+++|+|+++|++|++ .++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~id 517 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVD 517 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Confidence 111111223569999999999754 3468999 99999999999999999999999999999999999997 888
Q ss_pred CE-------------EEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 659 GK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 659 g~-------------~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
|. ++||+|+|+++++||+|||.++.+ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 73 699999999999999999999864 6678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||++||||++++|+++|||||||+||+++.+.+.+. +....+++|+|++||+++.++.||+|++|++|+|++.|+++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998888764 55556789999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHH
Q 000505 805 DLIADQNSELVRQMK 819 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1458)
++++ .++.+.++..
T Consensus 677 ~l~~-~~~~y~~l~~ 690 (694)
T TIGR01846 677 ELLA-LQGLYARLWQ 690 (694)
T ss_pred HHHH-cCChHHHHHH
Confidence 9998 5566766654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=575.85 Aligned_cols=532 Identities=17% Similarity=0.271 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1458)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~ 348 (1458)
.++.+++.+++..++.++..++..+.|++++.+++.+..... .. .+ ++.+++..++..+...-+.+...++..+
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---VL-PT--LALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888899999999999999999997654321 11 11 1111122233333333344556788888
Q ss_pred HHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000505 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1458)
+|..+...+|+|.++++.. .+++|++++.++.|++.+.+++. .+..+....+.+++.+++++. +.|..++..+++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~ 165 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999988653 34899999999999999987654 333444455555444444432 343555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERD----SLKKYLYTCSA 500 (1458)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~----~l~k~~~~~a~ 500 (1458)
+++...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++.+.-++-.+ ..+.......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777788888888888888999999999999999999999999888777665433222 22221122122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCC
Q 000505 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPI 579 (1458)
Q Consensus 501 ~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~ 579 (1458)
..++... ..+.++.++.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.++. ++..
T Consensus 246 ~~~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 246 NRMASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 2111111 123345677777788899999999999999999999999999999999999999999999976542 1111
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC
Q 000505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1458)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1458)
...+.......++++|++|+|+++ .+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~ 395 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LID 395 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EEC
Confidence 111111123469999999999753 357999 99999999999999999999999999999999999987 777
Q ss_pred C-------------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 659 g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
| .++||+|+|+++++|++|||.+|.+ .++++.+++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 6 3699999999999999999999864 4566777888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||++||||++++|+++|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999888765 456666789999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHH
Q 000505 805 DLIADQNSELVRQMK 819 (1458)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1458)
++.+ +++.+.++..
T Consensus 555 ~l~~-~~~~y~~l~~ 568 (585)
T TIGR01192 555 ELIQ-KDGRFYKLLR 568 (585)
T ss_pred HHHH-CCChHHHHHH
Confidence 9987 5566666554
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=575.29 Aligned_cols=506 Identities=21% Similarity=0.251 Sum_probs=386.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1458)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~ 352 (1458)
|+.+++..++.++..++..+.|+++..+++.+. +... ... -+.+++.+++..++..++.....+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888999999999999999999773 3221 111 222333344444445555555556677778888888
Q ss_pred HHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000505 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1458)
Q Consensus 353 L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~ 428 (1458)
+...+|+|.++++.. ..++|+++|.++.|++++.+++. .+..+....+.+++++++++. ++|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888889998887543 33899999999999999998764 355666555555555544442 2323334433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1458)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~ 508 (1458)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+..........+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777888889999999999999999999999999999888887654333322222222222221111111
Q ss_pred HHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000505 509 PTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1458)
Q Consensus 509 p~~v--~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1458)
..+. .++.++.+.+..+.++.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.++........+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 1111 11233444455778999999999999999999999999999999999999999999997543211111111 11
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-----
Q 000505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1458)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~----- 660 (1458)
....|+++|++|+|++. +++.++| |+++++|++++|+||+|||||||+++|+|+++|++|++ .++|.
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 12469999999999754 3478999 99999999999999999999999999999999999987 78774
Q ss_pred --------EEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHH
Q 000505 661 --------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1458)
Q Consensus 661 --------~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1458)
++||+|+|+++++||+|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+||+|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 799999999999999999999865 56788899999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEE
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1458)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l 792 (1458)
|||++++|++++||||||+||+++.+.+++. +....+++|+|+|||+++.+..||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999988764 55566789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=575.64 Aligned_cols=530 Identities=26% Similarity=0.362 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1458)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~ 352 (1458)
++ .+....++.++..++....|.++..+++.+.. .. .. ...+...+++..++..++.....+....++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-DL--GE--LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77888888888999999999999999987761 11 11 111111122222233333333445555666788888
Q ss_pred HHHHHHHHhcccccC--CC-CHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000505 353 LTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1458)
Q Consensus 353 L~~~Iy~K~L~ls~~--~~-~~G~ivnlms~D~~ri~~~~~~~~~~w~-~plqi~~al~lL~~~lG~~a~l~gl~~~~i~ 428 (1458)
+...+|+|.++++.. .+ ..|++++.++.|++.+...+........ .++-++..++++ ..++|..++..+++.+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLL-FSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 888889999988732 22 7899999999999999998876533222 333333333333 345544555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA-FLFWA 507 (1458)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~-~~~~~ 507 (1458)
......+.++.++...+..+..++..+.+.|.++|+++||.++.|+...++..+..+...+...+.....+... .....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667666888888888999999999999999999999999998766665554433333222222222222 11111
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 000505 508 SP-TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1458)
Q Consensus 508 ~p-~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~ 585 (1458)
.. ....++.++.+.+..+.++.+.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 11 223334456666667779999999999999999999999999999999999999999999998652 221111 12
Q ss_pred CCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-----
Q 000505 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1458)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----- 659 (1458)
..+..|+++|++|+|+++ .+.++| ||++++||++|||||+|||||||+++|+|.++|++|++ .++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 233469999999999853 589999 99999999999999999999999999999999999997 7777
Q ss_pred --------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 --------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
+++||||+|++|++||+|||.+|++ .++++..++++.+++.+.++.+|+|.+|.+||+|.+||||||||++
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 3699999999999999999999988 5777888888888899999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhc
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~ 810 (1458)
||||+++||+|++||||||+||+++.+.+.+. +....++||+|+|+|+++.+..||+|+||++|+|++.|+++|+++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 99999999999999999999999998888765 445557899999999999999999999999999999999999998 5
Q ss_pred chHHHHHHHHh
Q 000505 811 NSELVRQMKAH 821 (1458)
Q Consensus 811 ~~~~~~~~~~~ 821 (1458)
++.+.++...+
T Consensus 554 ~g~y~~l~~~~ 564 (567)
T COG1132 554 GGLYARLYQAQ 564 (567)
T ss_pred CCHHHHHHHHh
Confidence 77777776543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=596.60 Aligned_cols=200 Identities=24% Similarity=0.369 Sum_probs=166.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEccCC-CCccc-cHHHhcCcC-CCC--C--HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1287 IIPQDP-MLFQG-TVRTNLDPL-EQH--S--DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1287 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++.. +..+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46655 999999642 111 1 445666677766632 1124444 35999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe-CCEEEEe-cChhHHhh
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-EGKVLEY-DSPRQLLE 1431 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~-~G~ivE~-g~p~~Ll~ 1431 (1458)
+++|++|||||||++||..+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999999875 5699999999999865 99999998 8999886 56766643
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=532.18 Aligned_cols=523 Identities=22% Similarity=0.296 Sum_probs=402.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1458)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy 358 (1458)
+.+++..+..++...+-+++-.+++-+-..+. ... -+.++++++++.++.+++.---....+|.+.++|..+...++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777666654433221 111 233444555555556655544455677889999999999999
Q ss_pred HHhcccccCC---CCHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000505 359 KRSMAIKFAG---PSSGIIINMINVDVERIGDFFL----YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1458)
Q Consensus 359 ~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~~----~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~ 431 (1458)
+|..+++... ..+|++.++++.-++.+..++. .+...-..|+-+.++++.+.+.-| ++-++++.++..+
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa----lIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA----LILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHH
Confidence 9999887432 3889999999999998877653 333444567777777777765444 4444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (1458)
Q Consensus 432 ~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I----~~~R~~El~~l~k~~~~~a~~~~~~~~ 507 (1458)
.+.+++..++..++.++.-..=-...-+-|+|+-++|.|+-.+...++| ++.|+.-++.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555566778899999999999877665555 567888888887655544444433332
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCC-CCC
Q 000505 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITE-PTS 584 (1458)
Q Consensus 508 ~p~~v~~~tF~~~~~~~-~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~-~~~ 584 (1458)
+ +.+ ++.+...-+.+ ++++-...|.+|-+-.-.-.|++.+...+..-.++..+.+++..|++.++. .+..+. ...
T Consensus 237 s-iAl-vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 S-IAL-VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred H-HHH-HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 2 222 23344444556 599999999999998899999999999999999999999999999998873 222211 111
Q ss_pred CCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----
Q 000505 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1458)
Q Consensus 585 ~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---- 659 (1458)
......+..+|.+|.|++. ++.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 1223345556999999864 388999 99999999999999999999999999999999999986 8886
Q ss_pred ---------EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 ---------~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
+++||+|+|.++.+||||||+++++ -+++...++++..+|.+.++. |+|.+|.+||+|.+|||||+|||
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 3799999999999999999999998 557788899999999999888 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1458)
+||||+++++++|||||||++||+++++.+. +.+..+.++||+|+|||+++.+..+|+|++|++|+++++|+++++.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 9999999999999999999999999976664 56777778999999999999999999999999999999999999988
Q ss_pred cchHHHHHHHHh
Q 000505 810 QNSELVRQMKAH 821 (1458)
Q Consensus 810 ~~~~~~~~~~~~ 821 (1458)
+++-+.+++..+
T Consensus 544 ~~~~y~~l~~~q 555 (559)
T COG4988 544 KQGLYANLLKQQ 555 (559)
T ss_pred cCcHHHHHHHHH
Confidence 666777776543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=584.85 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=165.4
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 4599999999999999999999999999999999999999999999875 3479
Q ss_pred EEEccCCCCccccHHHhcC-----cCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000505 1286 SIIPQDPMLFQGTVRTNLD-----PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLd-----p~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1458)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+.. .+.+ ...||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~------~~~~----~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQP----MYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH------hcCC----ccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 12234677888899998885321 1222 3469999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHH
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQL 1429 (1458)
Q Consensus 1361 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv-E~g~p~~L 1429 (1458)
++|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++.+.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999998874 3 599999999999976 9999999999998 45777664
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=561.91 Aligned_cols=485 Identities=23% Similarity=0.330 Sum_probs=344.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEcC
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--~~ayv~Q 666 (1458)
.|.++|++++|.. .+.+++ |+++.+|+++||||+|||||||||++|.|++.|++|++ ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4788999999953 478899 99999999999999999999999999999999999997 5554 7999999
Q ss_pred CCCCCC-CcHHHHHhcCCCCCH---HHHHHHHH---------------------HhhhhhhHHhhcCCC-cccccCCCCC
Q 000505 667 SSWIQT-GTIRENILFGKDMRQ---SFYEEVLE---------------------GCALNQDIEMWADGD-LSVVGERGIN 720 (1458)
Q Consensus 667 ~~~i~~-~Ti~enI~fg~~~~~---~~y~~vl~---------------------~c~l~~dl~~l~~gd-~t~ig~~g~~ 720 (1458)
++.... .||.|.+.-|...-. .+|+++.. ....+.+++..-.|. .+.......+
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~ 153 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS 153 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhh
Confidence 988875 599999998753211 11111111 111122222222221 1111456679
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeE-E
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI-E 798 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i-~ 798 (1458)
||||||.||+|||||..+||++||||||++||..+..++ ++.+... +| |+|+||||.+||+. |++|+.++.|++ .
T Consensus 154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 999999999999999999999999999999999987665 4444432 45 99999999999987 999999999987 5
Q ss_pred EcccchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHH
Q 000505 799 QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWT 878 (1458)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 878 (1458)
+.|+|+.+.+.+.........+++.. + ++.+
T Consensus 231 y~Gny~~~~~~r~~~~~~~~~~~~~~------------------------~------------------~~~~------- 261 (530)
T COG0488 231 YKGNYSSYLEQKAERLRQEAAAYEKQ------------------------Q------------------KELA------- 261 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHH------------------------H------------------HHHH-------
Confidence 88999998873322211111000000 0 0000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958 (1458)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 958 (1458)
.-..++..
T Consensus 262 ~~~~~i~r------------------------------------------------------------------------ 269 (530)
T COG0488 262 KEQEWIRR------------------------------------------------------------------------ 269 (530)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000505 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1458)
Q Consensus 959 s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~ 1038 (1458)
+.
T Consensus 270 -------------------------------~~----------------------------------------------- 271 (530)
T COG0488 270 -------------------------------GK----------------------------------------------- 271 (530)
T ss_pred -------------------------------HH-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 000505 1039 ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRIN 1118 (1458)
Q Consensus 1039 l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1118 (1458)
....++
T Consensus 272 -------~~~~~~------------------------------------------------------------------- 277 (530)
T COG0488 272 -------AAASKA------------------------------------------------------------------- 277 (530)
T ss_pred -------hccchH-------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hcCCCCCccccC-C
Q 000505 1119 LLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF--TNIPSEAPLVIK-N 1195 (1458)
Q Consensus 1119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~--~~~~~E~~~~~~-~ 1195 (1458)
...+..+...+|+.+- ...|.+...... .
T Consensus 278 ------------------------------------------------k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 278 ------------------------------------------------KKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 0001111112222211 011111000000 0
Q ss_pred CCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC
Q 000505 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275 (1458)
Q Consensus 1196 ~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1275 (1458)
..+++.-+.+-.++++|+++.|.++ .++++++||.|.+|++||||||||+|||||+++|.|-..|.+|+|.+.-.
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~---- 384 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET---- 384 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----
Confidence 0111111123358999999999765 56999999999999999999999999999999999999999999988631
Q ss_pred CCHHHHhcceEEEccCC-CCcc-ccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1276 IGLQDLRSRLSIIPQDP-MLFQ-GTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1276 i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
-++||.+|+. .++. .|+-+++.... +..+.++...|.+.++..- ...++|+ .||||||-|
T Consensus 385 -------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v~----~LSGGEk~R 447 (530)
T COG0488 385 -------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPVG----VLSGGEKAR 447 (530)
T ss_pred -------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCchh----hcCHhHHHH
Confidence 2689999997 4443 38888887543 4447889999999988543 2345554 599999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe-cChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY-DSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~-g~p~~Ll 1430 (1458)
+.||+.++.+|++|||||||++||.+|...+.++|.++ +.|||+|||+...+.. |++|+++++ ++.++ |.+++..
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 99999999999999999999999999999999999875 4599999999999976 999999999 88888 7888877
Q ss_pred hc
Q 000505 1431 ED 1432 (1458)
Q Consensus 1431 ~~ 1432 (1458)
+.
T Consensus 525 ~~ 526 (530)
T COG0488 525 EQ 526 (530)
T ss_pred Hh
Confidence 54
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-57 Score=608.24 Aligned_cols=211 Identities=22% Similarity=0.278 Sum_probs=177.2
Q ss_pred cEEEEeeeEEeCC-----------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeC
Q 000505 1207 KIELENLLVQYNP-----------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDI 1273 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~-----------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI 1273 (1458)
.+.|+||++..+. +...+|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999988742 123599999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhcceEEEccCCCCccc-cHHHhcCcC------CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1274 SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPL------EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1274 ~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~------~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
. ....|+.++|++|++.++.. |+||||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24577889999999987765 999999531 122333 36678888887653 366776544
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeC-
Q 000505 1343 -ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE- 1417 (1458)
Q Consensus 1343 -~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~t-i-~~~DrVlvL~~- 1417 (1458)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999864 47899999999984 3 56999999996
Q ss_pred CEEEEecChh
Q 000505 1418 GKVLEYDSPR 1427 (1458)
Q Consensus 1418 G~ivE~g~p~ 1427 (1458)
|+++++|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-57 Score=518.02 Aligned_cols=486 Identities=18% Similarity=0.191 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHH
Q 000505 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1458)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i 1016 (1458)
.++..++..+|+..+...+.+.-.++....+...+++|..--...+..+.+ +|++.+..++...-...++..-..-
T Consensus 73 y~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P 148 (580)
T COG4618 73 YAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMP 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHH
Confidence 345567778899999999999999999999999988876544333334443 3666666554332111222111222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHH
Q 000505 1017 SIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLI 1096 (1458)
Q Consensus 1017 ~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~ 1096 (1458)
..+++++...|++.++.+.-.++.+.+..+--...|+-.+...+....-.++..-+..+..+|+|.|+..+..+++.+..
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 33445555667766655544433333333333334444444555566667888889999999999999877666665544
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000505 1097 DDYSCVTFHNCGTMEWLCLRINLLFNFAFFL-VLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMIS 1175 (1458)
Q Consensus 1097 d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~s 1175 (1458)
..+....-...-.+.-++...-.+=...... ..+...+...+.+++|..-..-...-..-..+-..+..|-+.-....|
T Consensus 229 ~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s 308 (580)
T COG4618 229 AAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQS 308 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 4433322221111111111111111111111 112233345667777654322111112223344567788888888999
Q ss_pred HHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHH
Q 000505 1176 VERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255 (1458)
Q Consensus 1176 veRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L 1255 (1458)
..|+.+..+..++..... +.| ..+|.+.++++++.=++...++|+|+||+++|||-+|||||||||||||.++|
T Consensus 309 ~~Rl~~lL~~~p~~~~~m---~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 309 YKRLNELLAELPAAAERM---PLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred HHHHHHHHHhCccccCCC---CCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHH
Confidence 999999987544332111 111 13789999999986555566899999999999999999999999999999999
Q ss_pred hccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhccccc
Q 000505 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLL 1334 (1458)
Q Consensus 1256 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gL 1334 (1458)
.|...|.+|.|.+||-|+.+.+.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.++.+|.|.++|+||
T Consensus 383 vG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY 462 (580)
T COG4618 383 VGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY 462 (580)
T ss_pred HcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc
Confidence 9999999999999999999999999999999999999999999999999877 678888999999999999999999999
Q ss_pred CccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEE
Q 000505 1335 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVL 1413 (1458)
Q Consensus 1335 dt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVl 1413 (1458)
||.|||+|..||||||||++||||+..+|+++|||||-||||.+-|+.+.++|.+.. +++|+|+||||++.+..+|+|+
T Consensus 463 dT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred cCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee
Confidence 999999999999999999999999999999999999999999999999999987654 6899999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhc
Q 000505 1414 VLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1414 vL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||++|++..||+-+|.+++
T Consensus 543 vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred eecCChHHhcCCHHHHHHH
Confidence 9999999999999998864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=605.28 Aligned_cols=529 Identities=16% Similarity=0.189 Sum_probs=390.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhccc--ccccc-cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000505 898 LCQVLFQALQMGSNYWIAWATDE--KRKVS-REQ--LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1458)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~--~~~~~-~~~--~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ 972 (1458)
+..++..++....++.+....+. .+... ... +++.++++.++..++.....+.....+.+.-..+...+++++++
T Consensus 324 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ 403 (1522)
T TIGR00957 324 CFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALV 403 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666667777777654431 11111 111 11222222222233322233345567888888899999999999
Q ss_pred CccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1458)
Q Consensus 973 ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr 1052 (1458)
.|..+++...+|+++|++++|++.+.... ..+..++...+.++..++++.....+.+++.+.++++++.+..+..+..+
T Consensus 404 l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~ 482 (1522)
T TIGR00957 404 ITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482 (1522)
T ss_pred CChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998744 34555555555555554444332222222222233344444555555566
Q ss_pred HHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000505 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132 (1458)
Q Consensus 1053 ~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~ 1132 (1458)
..++.....+....+.++|.++|+++||.|++|+.|.+++.+..++..+..........+.... .....+++.++.+..
T Consensus 483 ~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~ 561 (1522)
T TIGR00957 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT-WVCTPFLVALITFAV 561 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6666677777888899999999999999999999999888776655444332222111111111 111111111111111
Q ss_pred H-hhc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCC-CccEE
Q 000505 1133 V-TLP-RSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIE 1209 (1458)
Q Consensus 1133 ~-~~~-~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~-~g~I~ 1209 (1458)
+ ... .+.++++.+-.++++...+...+..+...+..+.....|.+|+.+|.+.+++.+...+.. ...+. .+.|+
T Consensus 562 ~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~~~~i~ 638 (1522)
T TIGR00957 562 YVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR---TIKPGEGNSIT 638 (1522)
T ss_pred HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc---ccCCCCCCcEE
Confidence 1 111 345677766666666666677778888889999999999999999998665432111110 11111 24799
Q ss_pred EEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEc
Q 000505 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1458)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1289 (1458)
++|++++|+++.+++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+|| +++|+|
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~ 705 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVP 705 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEc
Confidence 9999999976556799999999999999999999999999999999999999999999998 599999
Q ss_pred cCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1290 QDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1290 Qdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
|+|.+|++|||+||....++++++..++++.|++.+.+..+|+|+||.+|++|.+||||||||++||||++++|+|++||
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred CCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999876667888899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1370 EATASIDTATDNVIQQTIRE---ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~---~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
||||+||+++++.|.+.+.+ ..+++|+|+||||++.+..||+|++|++|++++.|+|+++++ +++.|+++..++.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~ 863 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYA 863 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhc
Confidence 99999999999999998863 357899999999999999999999999999999999999996 4678999887543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-55 Score=556.86 Aligned_cols=509 Identities=14% Similarity=0.078 Sum_probs=400.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhccccccccc---chhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR---EQLIGVFI----FLSGGSSFFILGRAVLLATIAIKTAQRLFL 964 (1458)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~---~~~l~vy~----~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 964 (1458)
.+.+.+++.++...+.+..+++.....+.-...+. ..++..++ +++++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777778888888766642111111 11122233 333334444455555666677777788888
Q ss_pred HHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Q 000505 965 NMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWY 1043 (1458)
Q Consensus 965 ~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~-~~~~~~~v~~p~~~l~~~~ 1043 (1458)
+.+++....++.|||. ++|++.+|+++|++.+...+...+..++..++.+++.++.++. .+|.+.++++.+.++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877889999997 8899999999999999999999999999999999988887775 8898888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000505 1044 QAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1123 (1458)
Q Consensus 1044 ~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1123 (1458)
.+++.+..+++.+......+.+.+.+.|.++|+.+||+|+.|+.+.+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888888888777777777777776666542
Q ss_pred HHH-H-HHH--HHHhhcC----CCcCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-
Q 000505 1124 AFF-L-VLI--ILVTLPR----SAIDPSL-AGLAATY---GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP- 1190 (1458)
Q Consensus 1124 ~~~-~-~~~--~~~~~~~----~~~~~~~-~gl~l~y---~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~- 1190 (1458)
... + ..+ ..+.... +.++.|. ++...+| ...+...+..+.....++.....+.+|+.++.+.++|..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1 111 1122211 4556553 3334444 445567777888889999999999999999986533210
Q ss_pred ------cccC--CC-----CC------CCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHH
Q 000505 1191 ------LVIK--NS-----RP------SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251 (1458)
Q Consensus 1191 ------~~~~--~~-----~~------~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTL 1251 (1458)
...+ +. ++ .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 00 0000134679999999999643 469999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcC--------CCCCHHHHHHHHHHcCc
Q 000505 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--------EQHSDQEIWEVINKCHL 1323 (1458)
Q Consensus 1252 l~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sdeeI~~aL~~~~L 1323 (1458)
+++|.|+++|++|+|.+|+ |++++++||+|.+|++|+|+|+... .+.++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999642 24678899999999999
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000505 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1458)
Q Consensus 1324 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl 1403 (1458)
.+++.+ |.|+|+..+ .+.+||||||||++||||++++|++|+||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999874 89999999999
Q ss_pred hhhhhcCEEEEEeC
Q 000505 1404 PTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1404 ~ti~~~DrVlvL~~ 1417 (1458)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=563.33 Aligned_cols=191 Identities=25% Similarity=0.343 Sum_probs=163.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|+. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ . +++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------KIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------eEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1 599
Q ss_pred EEccCCCC-ccccHHHhcCcC-CCC-CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1287 IIPQDPML-FQGTVRTNLDPL-EQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1287 iIpQdp~L-F~gTIR~NLdp~-~~~-sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+.. |.++ ..||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-------DKNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-------hCCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 456999998642 122 233567788888886543 3444 359999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~ 1425 (1458)
+||||||||++||.++...+.+.|++.. .++|||+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999864 37899999999999865 999999964 8777666
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=497.46 Aligned_cols=515 Identities=22% Similarity=0.298 Sum_probs=389.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000505 288 TIASYIGPFLITNFVSFLSGKHDHSS--YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK 365 (1458)
Q Consensus 288 ~~~~~~~P~ll~~~i~~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K~L~ls 365 (1458)
-.+....|++++..++-++.-+. .+ .......+.+++++.+..+++.-.-.+....+..++--....-+|+..+.++
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~-~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADG-NPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hHhheehHHHHHHHHhhhhhccc-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555679999999998863222 12 1112233444555555555444333344444455555555666777776665
Q ss_pred cCC---CCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 366 FAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQER 441 (1458)
Q Consensus 366 ~~~---~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~~~~~~ 441 (1458)
... +.+|++.+.|..-...|.+++.. +..+....+++.++...+|...|...++..++.+..-..++...+..-.+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 543 38999999999998888888653 45566667788888899999999444444555555556667777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000505 442 FHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLF---WASPTLVSVITF 517 (1458)
Q Consensus 442 ~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~-R~~El~~l~k~~~~~a~~~~~~---~~~p~~v~~~tF 517 (1458)
+++++.++.|+-.+..-+.|.|-.+||.|+-|+.-.++..+. ++.|-..++-...+. +.++.- +++| ++.++..
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~-~lnfgQ~~iFsv~-~~~im~l 279 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLA-FLNFGQKAIFSVA-LTFIMVL 279 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHH-HHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999877777654 555554444333222 222211 1111 1112222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeE
Q 000505 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597 (1458)
Q Consensus 518 ~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~ 597 (1458)
+..-.....+|.+...-.-+++..|+.|+..|...+..+.|+..-+.-....+..+++.... ..|....+..|+++|++
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVH 358 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeE
Confidence 22224456799999999999999999999999999999988887766554444433321110 12222334569999999
Q ss_pred EEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEE
Q 000505 598 YAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAY 663 (1458)
Q Consensus 598 fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ay 663 (1458)
|+|.++ .+.|++ ||+|++||+|||+|+|||||||++++|++..+ .+|++ .++|. |||
T Consensus 359 f~y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 359 FSYGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred EEeCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeE
Confidence 999864 579999 99999999999999999999999999999999 99997 88884 699
Q ss_pred EcCCCCCCCCcHHHHHhcCCCCCH-HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000505 664 VPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1458)
Q Consensus 664 v~Q~~~i~~~Ti~enI~fg~~~~~-~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~ 742 (1458)
|||+..|||.||.+||.+|.+... ++..++++..++.+-+..+|+|.+|.+||+|..|||||||||+||||+.+||+|+
T Consensus 430 VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 430 VPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred eCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 999999999999999999987532 3333344445778889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHHHH
Q 000505 743 IFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1458)
Q Consensus 743 lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1458)
++|||||+||.++.+.+++. +++...+||+|+|-|+++.++.||+|+++++|++.+.|+++|++. +++.+.++
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred EecCcccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 99999999999999999875 555778999999999999999999999999999999999999998 66555544
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=550.52 Aligned_cols=476 Identities=20% Similarity=0.242 Sum_probs=372.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000505 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1458)
Q Consensus 952 ~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~ 1031 (1458)
...|.+.-..+-..++++.++..-+--..++.|+|+|-++.|.+.+++..+. +..+....++++..+.++...--+-++
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~ 345 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSAL 345 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 4556666666666677777777776667788999999999999999986654 445555666666555554433222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000505 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1458)
Q Consensus 1032 v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1458)
+.+.++++++.++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++..+.-++-.+..........
T Consensus 346 ~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 346 AGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777888888888888888999999999999999999999998876655543333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc
Q 000505 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1458)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1458)
...+.......++.++.....+....+..++..+-.++++.-.+...+..+...+..+-+..+|++|+.+|...++..+.
T Consensus 426 ~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~ 505 (1381)
T KOG0054|consen 426 LNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD 505 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 22222222222222222222222334566776776677666666666666777777777889999999999976654432
Q ss_pred ccCCCCCCCCCCCCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000505 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1270 (1458)
..+. .+.-+.+-.|+++|.+++++++ .++.|+||||+|++|+.+||||++|||||||+++|+|-.+..+|++.++|
T Consensus 506 ~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 506 SVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred cccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 2211 1112334569999999999864 34599999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
.++|+||.|.+|+|||||||-...+++.+.-.++++.|+|.+-++.+|.|=.|.|||+|.|||||||
T Consensus 583 -------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 -------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred -------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++||||+.++++|.+||.|-|+||.++.+.| .+.|+...+++|+|.|||.++.+.++|+|++|++|+|+|.|+++||
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 999999999999999999999999999998766 6788888899999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHH
Q 000505 1430 LEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1430 l~~~~s~F~~l~~~~~ 1445 (1458)
++ .++.|.++..+..
T Consensus 730 ~~-~~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 730 LK-SGGDFAELAHEEE 744 (1381)
T ss_pred Hh-cchhHHHHhhccc
Confidence 95 5788888855443
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=489.38 Aligned_cols=461 Identities=22% Similarity=0.321 Sum_probs=348.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH
Q 000505 344 RIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL--YKNLGAAPA 418 (1458)
Q Consensus 344 r~g~~iR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL--~~~lG~~a~ 418 (1458)
....|+=+.+.-.+|+|...++.... ..|++.|.+..|++.+++.+..+...|...+-+++++.+. |..++ .+.
T Consensus 84 ~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~Al 162 (573)
T COG4987 84 DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LAL 162 (573)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence 34557778888889999987766543 8999999999999999999988887776665554444433 44455 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHH---HH
Q 000505 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKK---YL 495 (1458)
Q Consensus 419 l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k---~~ 495 (1458)
+.++...+..+.+...+.+..++..++..+.+..--....+.+.|+.-.+++|-++.|.+.+++. |..|.+. ..
T Consensus 163 ll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~---e~~~~~~q~k~~ 239 (573)
T COG4987 163 LLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT---EASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66666666666666667777777777777777776778889999999999999999998877654 3333322 22
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH-HhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000505 496 YTCSAIAFLFWA-SPTLVSVITFGVCI-LLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1458)
Q Consensus 496 ~~~a~~~~~~~~-~p~~v~~~tF~~~~-~~~~~L~-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1458)
.......++..+ ...++....++... .-.+.++ +.-+...++.|..+-.-....|.++...-|+..|..|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 222222222211 11122211111111 1112233 22222222223222211122347778888999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCC
Q 000505 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1458)
Q Consensus 573 ~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~ 651 (1458)
++........ ....+..++++|++|+|+.+ +.+.|+| ||++++||++||+|++|||||||++.|.|.++|++
T Consensus 320 ~~e~~~~~~~-~~~~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~ 392 (573)
T COG4987 320 KPEVTFPDEQ-TATTGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392 (573)
T ss_pred CcccCCCccc-cCCccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 7622211111 11122379999999999975 5689999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------EEEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 652 G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
|++ ..+| .+++++|.+.+|++|+|||+.+++|. +.+...++++..+|++-++..|+|.+|.+||.
T Consensus 393 G~i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 393 GSI-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred Cee-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 997 7877 36899999999999999999999875 45677889999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeE
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1458)
|..||||||||++|||++.+|++++||||||.+||+.|++++.+. +....++||+|+|||++..++.+|+|++|++|+|
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~~~~~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHHHhcCCeEEEEecccccHhhcCEEEEEECCee
Confidence 999999999999999999999999999999999999999999875 4556689999999999999999999999999999
Q ss_pred EEcccchhhhhhcchHHHHHH
Q 000505 798 EQSGKYEDLIADQNSELVRQM 818 (1458)
Q Consensus 798 ~~~g~~~~l~~~~~~~~~~~~ 818 (1458)
+++|+|+++++ .++.+.++.
T Consensus 551 ie~G~~~~Ll~-~~g~~~~l~ 570 (573)
T COG4987 551 IEEGTHAELLA-NNGRYKRLY 570 (573)
T ss_pred eecCCHHhhhc-cccHHHHHh
Confidence 99999999998 566665543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=573.15 Aligned_cols=458 Identities=18% Similarity=0.203 Sum_probs=346.4
Q ss_pred HHHHHHHHhccccc---CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000505 353 LTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1458)
Q Consensus 353 L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~ 428 (1458)
+-..+|++.++.+. .....|+|+|.++.|++.+.+++. .+..+....+.++.++++++..-. +..++.+.++++.
T Consensus 1033 l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1033 MHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555666665443 233899999999999999998765 345555566666666555543322 3333222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKK----YLYTCSAIAFL 504 (1458)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k----~~~~~a~~~~~ 504 (1458)
..+...+.+..+..++.....+..-....+|.++|+++||.|++|+.|.++..+.-+...+...+ ..+......++
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666777778999999999999999999999888876553333322111 11111111111
Q ss_pred HHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--C--
Q 000505 505 FWASPTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK--P-- 578 (1458)
Q Consensus 505 ~~~~p~~v~~~tF~~~~--~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~--~-- 578 (1458)
. ...++.++.++++. .....++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..++++ .
T Consensus 1192 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1192 S--NIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred H--HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 1 11111122222222 22335788888888888888999999999999999999999999999996322110 0
Q ss_pred ---------------------CCC--C----CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEc
Q 000505 579 ---------------------ITE--P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCG 630 (1458)
Q Consensus 579 ---------------------~~~--~----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG 630 (1458)
.+. . +.......|+++|++|+|+++ ..+.|+| ||+|++||++||||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEEC
Confidence 000 0 001123469999999999754 3468999 99999999999999
Q ss_pred cCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHh
Q 000505 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (1458)
Q Consensus 631 ~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c 697 (1458)
++|||||||+++|+|.++|++|++ .++|. ++||||+|.+|+|||||||..+.+++++...++++.|
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELV 1422 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHC
Confidence 999999999999999999999996 88873 6999999999999999999987788889999999999
Q ss_pred hhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEE
Q 000505 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776 (1458)
Q Consensus 698 ~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilv 776 (1458)
++.+.++.+|+|.+|.+||+|.|||||||||++||||++++ |+|+|||||||+||+++.+.+. +.++...+++|+|+|
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~I 1501 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITI 1501 (1560)
T ss_pred CChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEE
Confidence 99999999999999999999999999999999999999996 8999999999999999977774 566777789999999
Q ss_pred ecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHHHHHHHh
Q 000505 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821 (1458)
Q Consensus 777 tH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 821 (1458)
+|+++.+..||+|++|++|+|++.|+++|++++++..|.+++...
T Consensus 1502 AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred eccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999974567787776543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=523.21 Aligned_cols=508 Identities=15% Similarity=0.147 Sum_probs=365.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1458)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1458)
+++ .+|+.+++..++.++..++..+.|.+++.+++... .. .....+.+++ +++.. .++..-..+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~--~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEEN--FL--GQGSLFSFGG-LCLLA---LLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc--cchHHHHHHH-HHHHH---HHHHHHHHHHHHHHHH
Confidence 456 67788888888999999999999999988875321 11 1110111222 22221 2222233344566778
Q ss_pred HHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000505 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 348 ~iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1458)
++...+...+|+|.++++.. ..++|++++.++.|++.+.+++..+..+....+.+++++++++. +.|..+++.+++
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAY-LSVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 88888888899999887653 24899999999999999999876555555555555555544443 233444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1458)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~--~f~~~I~~~R~~El~~l~k~~~~~a~~~ 502 (1458)
+++.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.|+ ...+++.+.-++-.+...+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666677777778888888999999999999999999854 3333333322211111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C-CC
Q 000505 503 FLFWASPTLVSVITFGVCILL---KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-Q-KK 577 (1458)
Q Consensus 503 ~~~~~~p~~v~~~tF~~~~~~---~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~-~~ 577 (1458)
.+....+ .+.++.+++. .+.++.+.+++++.+...+..|+..+...+..+.++++|++||.++++.++ + ..
T Consensus 242 ~~~~~~~----~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~ 317 (555)
T TIGR01194 242 NFGQLLF----FLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPE 317 (555)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 1111111 1111111111 257999999999999999999999999999999999999999999986422 1 10
Q ss_pred --CCCCC-----CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC
Q 000505 578 --PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 578 --~~~~~-----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~ 649 (1458)
..+.. +.......|+++|++|+|++.+. ...+.|+| |+++++|++++|+||||||||||+++|+|+++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 318 LELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000 11112346999999999975300 12368999 999999999999999999999999999999999
Q ss_pred CCCcEEEECCE-------------EEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccC
Q 000505 650 ISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1458)
Q Consensus 650 ~~G~~i~~~g~-------------~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~ 716 (1458)
++|++ .++|. ++||+|+|+++++|+++|+ ..+.++++.+++++.+++.++++.+|+|++|.
T Consensus 395 ~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 395 QEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99987 77763 5999999999999999995 23445677788899999999999999999873
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhccCCEEEEEeCC
Q 000505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1458)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~D~i~~l~~G 795 (1458)
.+||||||||++||||++++|+|+|||||||+||+++.+.+.+.+++.. .+++|+|+|||+++.+..||+|++|++|
T Consensus 469 --~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 469 --TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999998887665443 4689999999999998899999999999
Q ss_pred eEEEc
Q 000505 796 KIEQS 800 (1458)
Q Consensus 796 ~i~~~ 800 (1458)
++++.
T Consensus 547 ~i~~~ 551 (555)
T TIGR01194 547 CIVKD 551 (555)
T ss_pred EEEEe
Confidence 99864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=565.34 Aligned_cols=477 Identities=19% Similarity=0.209 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000505 941 SFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020 (1458)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~ 1020 (1458)
.++.....+.....+.+.-..+...+++++++.+...+++.++|+++|++++|++.++..+... ..++...+.++..++
T Consensus 136 ~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~ 214 (1490)
T TIGR01271 136 TLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMG 214 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444555556677777777778899999999999999999999999999999999876543 344455555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Q 000505 1021 LMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100 (1458)
Q Consensus 1021 v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~ 1100 (1458)
++.....+..++.+.++++++.++.+..+.....++..........+..+|.++|+++||.|++|+.|.++..+.-+...
T Consensus 215 lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El 294 (1490)
T TIGR01271 215 LIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDEL 294 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55444434444444445556666667777777777777788888899999999999999999999999988877766554
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHH
Q 000505 1101 CVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQ-AWVIWNLCNVENKMISVERI 1179 (1458)
Q Consensus 1101 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~-~~~i~~~~~le~~~~sveRi 1179 (1458)
+..........|....... ...+..++.+..+.+..+ .+++.+-.++++...+...+ ..+...+..+....+|++||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI 372 (1490)
T TIGR01271 295 KLTRKIAYLRYFYSSAFFF-SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKI 372 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332222222211111 111111111111111122 34544444444444444433 34566677778889999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCC--------------------------------CCcceee
Q 000505 1180 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT--------------------------------LPMVLKG 1227 (1458)
Q Consensus 1180 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~--------------------------------~~~vL~~ 1227 (1458)
.+|++.++..+. +. + +....|+++|++|.|+.. ..++|+|
T Consensus 373 ~~fL~~~e~~~~--~~-----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 444 (1490)
T TIGR01271 373 QDFLCKEEYKTL--EY-----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKN 444 (1490)
T ss_pred HHHhcCcccccc--cc-----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceee
Confidence 999976543211 00 0 112358888888888421 1358999
Q ss_pred eeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCC
Q 000505 1228 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE 1307 (1458)
Q Consensus 1228 is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~ 1307 (1458)
+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+|| +++|+||+|.+|++|||+||....
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~ 511 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL 511 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998 599999999999999999998655
Q ss_pred CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-H
Q 000505 1308 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ-T 1386 (1458)
Q Consensus 1308 ~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~-~ 1386 (1458)
.+++++..++++.|+|.+.+..+|+|.+|.+|++|.+||||||||++||||++++|+|++||||||+||+++.+.|.+ .
T Consensus 512 ~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 512 SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred ccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 667777888999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000505 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1387 I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~ 1442 (1458)
+++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+. ++.|.+.+.
T Consensus 592 l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 592 LCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred HHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 6777789999999999999999999999999999999999999864 456766653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=502.40 Aligned_cols=441 Identities=23% Similarity=0.353 Sum_probs=332.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1458)
..++++|.+-+|+. ...|++ ||++.+||+++++|.||+|||||+|.|.|.++|++|++ .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 46889999988864 478999 99999999999999999999999999999999999986 88885
Q ss_pred -------EEEEcCCCCC-CCCcHHHHHhcCCCCCH-------HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 661 -------KAYVPQSSWI-QTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 661 -------~ayv~Q~~~i-~~~Ti~enI~fg~~~~~-------~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
|+.|.|+.-+ ++.||.|||.+|++... .+.++.. ..+ ++.+... ........+||+||
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A--~~~---l~~lg~~--~~~~~~v~~Lsiaq 150 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA--REL---LARLGLD--IDPDTLVGDLSIAQ 150 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH--HHH---HHHcCCC--CChhhhhhhCCHHH
Confidence 5899999776 67899999999976432 2221111 111 1111111 11445677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc-
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY- 803 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~- 803 (1458)
||-|+||||++.+++|++||||||+|+.+..+++|+.+.+-..+|.++|+|||+++++.. ||+|.||+||+.+..++.
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~ 230 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTA 230 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccc
Confidence 999999999999999999999999999999999998543434479999999999999865 999999999999865431
Q ss_pred hhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHHHH
Q 000505 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAF 883 (1458)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y 883 (1458)
+++.. ++ .
T Consensus 231 ~~~~~----------------------------------------~~--------------------------------l 238 (500)
T COG1129 231 AETSE----------------------------------------DE--------------------------------L 238 (500)
T ss_pred cCCCH----------------------------------------HH--------------------------------H
Confidence 11100 00 0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 884 ITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963 (1458)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 963 (1458)
++.+
T Consensus 239 v~~M---------------------------------------------------------------------------- 242 (500)
T COG1129 239 VRLM---------------------------------------------------------------------------- 242 (500)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000505 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY 1043 (1458)
Q Consensus 964 ~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~ 1043 (1458)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000505 1044 QAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1123 (1458)
Q Consensus 1044 ~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1123 (1458)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCccccCCCCCCCCC
Q 000505 1124 AFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN-IPSEAPLVIKNSRPSPEW 1202 (1458)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~-~~~E~~~~~~~~~~~~~w 1202 (1458)
| +..+ .|. + +..-
T Consensus 245 ------------------------------------------------------r--~~~~~~~~-~---------~~~~ 258 (500)
T COG1129 245 ------------------------------------------------------R--ELEDLFPE-P---------PEEG 258 (500)
T ss_pred ------------------------------------------------------c--chhhhccc-c---------cccC
Confidence 0 0000 000 0 0000
Q ss_pred CCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH-HH
Q 000505 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DL 1281 (1458)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~L 1281 (1458)
+..-.++++|++.. ..++|+||++++||.+||.|=-|||+|-++.+|||.-++.+|+|.+||.++.--++. ..
T Consensus 259 ~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 259 IGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred CCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 11224678887642 258999999999999999999999999999999999999999999999988877765 58
Q ss_pred hcceEEEccCCC---Cc-cccHHHhcCcC--CCCCHH-HHHHHHHHcCcHHHHHhcc---cccCccccCCCCCCChhHHH
Q 000505 1282 RSRLSIIPQDPM---LF-QGTVRTNLDPL--EQHSDQ-EIWEVINKCHLAEIVRQDQ---RLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1282 R~~i~iIpQdp~---LF-~gTIR~NLdp~--~~~sde-eI~~aL~~~~L~~~i~~lp---~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+..|+|||-|-- +| .-+|++|+... ..++.. -+...-++.-..++++.+. ...+.++ .+||||.+|
T Consensus 333 ~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQ 408 (500)
T COG1129 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQ 408 (500)
T ss_pred HcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhh
Confidence 899999998862 44 55999998632 111100 1222333333444554442 2334444 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~ 1427 (1458)
+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. ++.+||+|+-.++.+. -||||+||.+|+++..=+..
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999865 5799999999999987 59999999999998743333
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=468.51 Aligned_cols=525 Identities=21% Similarity=0.263 Sum_probs=412.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1458)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1458)
.....+..-.+++.++..++|..+-.++..++|+.+-++-|-+=...+ .+. -..+.++....++++.+++.--.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~T--Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPT--LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888888888888888888999887766665433322 122 23344444555666677776677888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 000505 343 NRIGIRVRSALTVLIYKRSMAIKFAGPS---SGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLG 414 (1458)
Q Consensus 343 ~r~g~~iR~~L~~~Iy~K~L~ls~~~~~---~G~ivnlms~D~~ri~~~~~-----~~~~~w~~plqi~~al~lL~~~lG 414 (1458)
.|+|.++-..|..-||.-+++.....+. ..+.. .|.+.+..|.. -+.++--+|+-+++ +|++.-.+|
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG 162 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG 162 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH
Confidence 9999999999999999988654444332 23333 47888888764 34444445775544 356666889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000505 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1458)
Q Consensus 415 ~~a~l~gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~ 494 (1458)
+.+++|.++++.+..+|-.++++- -++-.+..-+|....+-.++|..+|+.+|......++..+....-+++-.+.
T Consensus 163 -~~a~~ga~iLv~la~ln~~~t~~p---~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~a 238 (580)
T COG4618 163 -LIALAGAIILVVLALLNERATRKP---LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERA 238 (580)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888887776542 3445566777888999999999999999999999999888877777666555
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000505 495 LYTCSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1458)
Q Consensus 495 ~~~~a~~~~~~~~~p~~v~--~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1458)
.........+.-..-.+.. +...|.|..+++++|++.++..--+..-.-.|+-..-....++..++.|.+|++++|..
T Consensus 239 sd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 239 SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5444433333222222222 34456777888999999999887777777789999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCC
Q 000505 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1458)
Q Consensus 573 ~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~ 651 (1458)
....+..-.. +..+..+.+++.++.-+.. .+|++++ ||++.+|+-++|+||+|||||||.++|.|..+|.+
T Consensus 319 ~p~~~~~m~L--P~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 319 LPAAAERMPL--PAPQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred CccccCCCCC--CCCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC
Confidence 6533322223 3345678999999976554 5799999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------EEEEEcCCCCCCCCcHHHHHh-cCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 652 G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~-fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
|+| +++| .|||.||+-.+|.|||+|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.
T Consensus 391 G~V-RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~ 469 (580)
T COG4618 391 GSV-RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469 (580)
T ss_pred CcE-EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC
Confidence 997 8887 479999999999999999997 6667777765555666667777889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeE
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1458)
|.+|||||||||+||||+|.||.+++||||-|+||.+-...+.+.+..-..+|.|+|+|||+++.+..+|+|++|+||++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999999999999998777766444444579999999999999999999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
...|+-+|+++
T Consensus 550 ~~FG~r~eVLa 560 (580)
T COG4618 550 AAFGPREEVLA 560 (580)
T ss_pred HhcCCHHHHHH
Confidence 99999988876
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=509.02 Aligned_cols=500 Identities=15% Similarity=0.160 Sum_probs=349.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1458)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1458)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.... .. -+.+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~---~~--~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL---LV--LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---hH--HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 566778888888888888888888888774 677788887553211 11 11111111112222222 223334
Q ss_pred HHHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000505 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1458)
Q Consensus 344 r~g~~iR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1458)
+++.++...+...+|+|.++++. ...++|+++|.++.|++.+..++..+..++...+.+++++++++. +.|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~-~~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAW-LSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 44555555566666777776643 234899999999999999998766667778888888777776664 34466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--cHHHHHHHHHH----HHHHHHHHHHHH
Q 000505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKLLR----LREIERDSLKKY 494 (1458)
Q Consensus 421 gl~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~--wE~~f~~~I~~----~R~~El~~l~k~ 494 (1458)
.++++++.+.+...+.++..+..++.++..+++.+.++|.++|++++++.. .++.+.++..+ .++...+..
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 229 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD--- 229 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH---
Confidence 666666666677788888888889999999999999999999999997433 22334444433 333222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000505 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1458)
Q Consensus 495 ~~~~a~~~~~~~~~p~~v~~~tF~~~~~~~~~---L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1458)
.......... .++..+.++.+.+.++. .+.+.+.....+...+..|+..+...+..+.+++++++|+.+++.
T Consensus 230 -~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 230 -TFHLSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred -HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111111 11111122222222211 222222222222333678999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCC
Q 000505 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1458)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~ 650 (1458)
.++.++.....+. +....++++|++|+|+.+ .+.|++ |+++++|++++|+||||||||||+++|+|+++|+
T Consensus 305 ~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 305 APYKAEFPRPQAF-PDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred ccccccccccccc-CcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5432111111111 112469999999999743 468999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 651 ~G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
+|++ .++| .++||+|+|.++++|++|| +.+.+++..++.++.+++..+++. ++|. .+
T Consensus 377 ~G~i-~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~ 446 (547)
T PRK10522 377 SGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----IS 446 (547)
T ss_pred CeEE-EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CC
Confidence 9987 7766 3699999999999999999 445566667777777777665542 2221 24
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCe
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1458)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 789999999999999999999999999999999999998888765443332 4899999999999999999999999999
Q ss_pred EEEc
Q 000505 797 IEQS 800 (1458)
Q Consensus 797 i~~~ 800 (1458)
+.+.
T Consensus 527 i~e~ 530 (547)
T PRK10522 527 LSEL 530 (547)
T ss_pred EEEe
Confidence 9865
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=471.51 Aligned_cols=524 Identities=18% Similarity=0.283 Sum_probs=384.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 283 FAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVE--SLTQRQWYFGANRIGIRVRSALTVLIYKR 360 (1458)
Q Consensus 283 ~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~l~~~~~~~~~~r~g~~iR~~L~~~Iy~K 360 (1458)
+..+.-+....-|.+.+.+++-+..+.. +.+..-+.++...|+-.... .+..+--.|..-++..----.+-..+|++
T Consensus 223 ll~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 3334444455569999999988875543 33332333333322221110 11111111111111111112334455666
Q ss_pred hcccccC---CCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000505 361 SMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLA 436 (1458)
Q Consensus 361 ~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~~~~~~ 436 (1458)
.+.||-. .|.+||+...|......+. +..+ +..+--..+.++++++..+....||-.+..+..|.+..-+...+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT 380 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKIT 380 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeee
Confidence 6555532 4588999988887776665 3332 334444456677777766666665665555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ----EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1458)
Q Consensus 437 ~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~----~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v 512 (1458)
..-.++|+++..+-.+--..-.+.|-|..++|.|+-|+ .+.+.|.+..++|-+.+....++......++-.. +.
T Consensus 381 eWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg--ll 458 (790)
T KOG0056|consen 381 EWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG--LL 458 (790)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--Hh
Confidence 66677777776654444445567788999999999886 4667777777888776655444443333222111 12
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccE
Q 000505 513 SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAI 591 (1458)
Q Consensus 513 ~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I 591 (1458)
....+.+|.+..+.++.|...-.+.++-.|.+|++.+.....++....+-++|+-+.+++++ -.|.....|-......|
T Consensus 459 ~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i 538 (790)
T KOG0056|consen 459 AGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKI 538 (790)
T ss_pred hhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeE
Confidence 22334556566778999998888888899999999999999999999999999999998766 22322223333345689
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE----------
Q 000505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1458)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~---------- 660 (1458)
+++|++|+|++. +|+|+| ||++++|+.+|+|||+|+||||+++.|.+.++..+|.+ .++|+
T Consensus 539 ~fsnvtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 539 EFSNVTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIRNVTQSSL 610 (790)
T ss_pred EEEEeEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHHHHHHHHH
Confidence 999999999865 799999 99999999999999999999999999999999999986 88884
Q ss_pred ---EEEEcCCCCCCCCcHHHHHhcCCCC--CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 661 ---KAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 661 ---~ayv~Q~~~i~~~Ti~enI~fg~~~--~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
||.|||+..+||.||..||.+|++- |++-| ++.++.+..+.+-.+|+|..|.+||+|-.||||+|||||+||++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~Asneevy-aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY-AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHH-HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 6999999999999999999999874 34444 45678888889999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHH
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 815 (1458)
.++|.|++|||.|||||.++.+.| +.++..+.+++|.|+|.|+++.+-+||.|++++||+|++.|+++|+....++.+.
T Consensus 690 LK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya 768 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYA 768 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHH
Confidence 999999999999999999998887 5678888899999999999999999999999999999999999999985566676
Q ss_pred HHHHH
Q 000505 816 RQMKA 820 (1458)
Q Consensus 816 ~~~~~ 820 (1458)
++-.+
T Consensus 769 ~MWq~ 773 (790)
T KOG0056|consen 769 DMWQA 773 (790)
T ss_pred HHHHH
Confidence 65543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=487.00 Aligned_cols=238 Identities=38% Similarity=0.649 Sum_probs=228.9
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.++.+++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000505 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1458)
+||||+|.+|++|+++|++|+...+++++|++++.+++.+++..+|+++|+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~~~ 1445 (1458)
|||||||++||+.++..+++.|++.+.+||||+||||++++..||||++|++|+++|+|+|++|+++ .+.|++++.+..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999984 589999998765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=470.86 Aligned_cols=439 Identities=24% Similarity=0.407 Sum_probs=337.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1458)
..+++++.+-.|+. ...+++ ||++++||++|++|+||+|||||+++|.|.++|++|++ .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46889999888873 356677 99999999999999999999999999999999999997 89885
Q ss_pred -------EEEEcCCCCC-CCCcHHHHHhcCCCCC----------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 661 -------KAYVPQSSWI-QTGTIRENILFGKDMR----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 661 -------~ayv~Q~~~i-~~~Ti~enI~fg~~~~----------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
||+|.|++-+ .+.||.|||..|.+-. .++.++..+.++|.-|. .++...||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-----------~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-----------DAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-----------cceeecCC
Confidence 5999999887 4679999999998632 23334444444444332 35667899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
=||||||.|-+|||++|+++|||||||.|-|...+++|+.+-+-...|+|||+|||.++++.. ||++-||+.|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg-- 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG-- 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe--
Confidence 999999999999999999999999999999999999998654444569999999999999876 99999999999763
Q ss_pred cchhhhhhcchHHHHHHHHhhhhccCCCCCCCCcccccCccCccchhhhcccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000505 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1458)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1458)
+++...+....+..+++
T Consensus 221 t~~~~~~~t~~ela~lM--------------------------------------------------------------- 237 (501)
T COG3845 221 TVDPVAETTEEELAELM--------------------------------------------------------------- 237 (501)
T ss_pred eecCCCCCCHHHHHHHh---------------------------------------------------------------
Confidence 32211000000000000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1458)
Q Consensus 882 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1458)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000505 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1458)
Q Consensus 962 l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~ 1041 (1458)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 000505 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLF 1121 (1458)
Q Consensus 1042 ~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1121 (1458)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCC
Q 000505 1122 NFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPE 1201 (1458)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~ 1201 (1458)
+.+ .+ ..+.+ . ++.
T Consensus 238 -------------vG~-~v-------------------------------------------~~~~~--------~-~~~ 251 (501)
T COG3845 238 -------------VGR-EV-------------------------------------------VLRVV--------K-PPS 251 (501)
T ss_pred -------------cCC-cc-------------------------------------------ccccc--------c-CCC
Confidence 000 00 00000 0 111
Q ss_pred CCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeC-CCCCHHH
Q 000505 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI-SMIGLQD 1280 (1458)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI-~~i~l~~ 1280 (1458)
-|..--++++|+++.=+.+ -..+++|||++++||.+||.|=.|-|-+-|+.+|.|+..|.+|+|.++|.|+ ...+...
T Consensus 252 ~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 1233458999999875443 3579999999999999999999999999999999999999999999999998 6667777
Q ss_pred Hh-cceEEEccCCC----CccccHHHhcCcCCCC----------CHHHHHHHHHHcCcHHHHHh---cccccCccccCCC
Q 000505 1281 LR-SRLSIIPQDPM----LFQGTVRTNLDPLEQH----------SDQEIWEVINKCHLAEIVRQ---DQRLLDAPVAEDG 1342 (1458)
Q Consensus 1281 LR-~~i~iIpQdp~----LF~gTIR~NLdp~~~~----------sdeeI~~aL~~~~L~~~i~~---lp~gLdt~v~e~G 1342 (1458)
.| ..+++||.|.+ ..+-|+.+|+-+.... .-.++.+..+ +.+++ .+.+.++++
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~a---- 401 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAPA---- 401 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcch----
Confidence 55 57999999984 5566999998543211 1122322221 11211 123344444
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
.+||||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +++.|+.|+-+++.+.. ||||.||.+|++
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 4799999999999999999999999999999999999999999888764 68899999999999866 999999999999
Q ss_pred EEecChhH
Q 000505 1421 LEYDSPRQ 1428 (1458)
Q Consensus 1421 vE~g~p~~ 1428 (1458)
+....|++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98887776
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=493.57 Aligned_cols=501 Identities=17% Similarity=0.160 Sum_probs=370.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354 (1458)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~~iR~~L~ 354 (1458)
.+++..++.++.+++....|++.+.+++.+.+.+. ... ...+.+++++++..++.++ ..|...++..++|.-+.
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~ 171 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLT 171 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999998764331 001 1011222223333333333 33445566667777777
Q ss_pred HHHHHHhccc----c--cCCCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000505 355 VLIYKRSMAI----K--FAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1458)
Q Consensus 355 ~~Iy~K~L~l----s--~~~~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i 427 (1458)
..++++.++- + ..+..+|++++.+++|++.+.+.+.. +..+...++.++.+++.|+..++|..++..++.+++
T Consensus 172 ~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 172 RYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666665542 1 11124799999999999999988754 455666777888888888877886666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1458)
Q Consensus 428 ~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~ 507 (1458)
.+.+...+.+...+...+..+..++-....+|.++|++.||.|+-|+...+++.+.=++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77778888888999999999999999999999999999999999999888887766444444444444444333322222
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCCCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000505 508 SP----TLVSVITFGVCILL-K----TPLTSGAVLS-A---LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1458)
Q Consensus 508 ~p----~~v~~~tF~~~~~~-~----~~L~~~~vft-~---lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1458)
.. ..+..+..+..++. . +.++.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12222222232332 1 5688776544 2 334667789999999999999999999999999997533
Q ss_pred C-C-----C-CCCC-----------------CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEE
Q 000505 575 Q-K-----K-PITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1458)
Q Consensus 575 ~-~-----~-~~~~-----------------~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~iv 629 (1458)
+ . + .... .........|+++|++|+|+.+ .+.+++ |+++++||+++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~Iv 484 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLIC 484 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEE
Confidence 1 0 0 0000 0000122459999999999633 368999 9999999999999
Q ss_pred ccCCCChhHHHHHHhCCccCCCCcEEEEC--CEEEEEcCCCCCCCCcHHHHHhcCCC--------CCHHHHHHHHHHhhh
Q 000505 630 GSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCAL 699 (1458)
Q Consensus 630 G~~GsGKSTLl~~llG~~~~~~G~~i~~~--g~~ayv~Q~~~i~~~Ti~enI~fg~~--------~~~~~y~~vl~~c~l 699 (1458)
||||||||||+++|+|+++|.+|++ ..+ ..++||+|+|+++++|++|||.++.. ..+++.+++++.+++
T Consensus 485 G~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 485 GPNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999986 564 36899999999999999999999742 345666788888888
Q ss_pred hhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecc
Q 000505 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1458)
Q Consensus 700 ~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~ 779 (1458)
.+.++. |.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+. +.. .++|+|+|||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI~isH~ 638 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLFSVSHR 638 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEEEEeCc
Confidence 877766 888888776 5779999999999999999999999999999999999998877654 433 38999999999
Q ss_pred cchhccCCEEEEEeC
Q 000505 780 LEFLDAADLVLVMKD 794 (1458)
Q Consensus 780 ~~~l~~~D~i~~l~~ 794 (1458)
++.++.||+|++|++
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999989999999973
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=465.70 Aligned_cols=258 Identities=21% Similarity=0.371 Sum_probs=221.4
Q ss_pred HhhhHHHHHHHHhcCCCCCccccC------CCCC---CCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEE
Q 000505 1171 NKMISVERILQFTNIPSEAPLVIK------NSRP---SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1458)
Q Consensus 1171 ~~~~sveRi~~~~~~~~E~~~~~~------~~~~---~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIV 1241 (1458)
+.+.+++|+.+|...+.|.....+ ...+ +..||..+.|+++|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 446677888888776655432111 1111 3469999999999999999765567999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCC--CCCHHHHhcceEEEccCCCCccccHHHhcC--c-CCCCCH
Q 000505 1242 GRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--P-LEQHSD 1311 (1458)
Q Consensus 1242 GrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd--p-~~~~sd 1311 (1458)
||||||||||+++|+|+++ |++|+|.|||+|+. ++++.++|++++||||+|.+|++|+++|++ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 456788999999999999999999999998 3 234555
Q ss_pred HHH-----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 000505 1312 QEI-----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386 (1458)
Q Consensus 1312 eeI-----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~ 1386 (1458)
++. .++++.++++ .++++.+++.|.+||||||||+|||||++++|+||||||||++||+++...+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 4566777764 3456778899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1387 IREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1387 I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|++.++++|+|+|||+++++.+ ||||+||++|+++|.|+|++++.++..
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 9999889999999999999988 999999999999999999999976653
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=416.40 Aligned_cols=448 Identities=22% Similarity=0.295 Sum_probs=342.7
Q ss_pred HHHHHhcccccC---CCCHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000505 356 LIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1458)
Q Consensus 356 ~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~-~~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~i~~~~ 431 (1458)
..|++.+.||-. .+.+|..---|.--..-|+...+++ ..+....+++++...++++..|||.+...++.+++...+
T Consensus 20 ~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~f 99 (497)
T COG5265 20 VTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLF 99 (497)
T ss_pred HHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHh
Confidence 345555555432 2244544333444444455555543 334455689999999999999988888777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 000505 432 NTPLANRQERFHSMIMEAKDAR-IKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYLYTCSAIAFLFW 506 (1458)
Q Consensus 432 ~~~~~~~~~~~q~~~m~~~D~R-v~~~sE~L~~ik~IKl~~wE~~f~~~I~~~----R~~El~~l~k~~~~~a~~~~~~~ 506 (1458)
.......--.++++.. ..|.. -...-+.|-|-.++|.|+-|+.+..+-.+. ++.+++......++...-..++.
T Consensus 100 tv~~s~wr~~~rr~~n-~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~ 178 (497)
T COG5265 100 TVIVSDWRTDFRRLMN-NADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFS 178 (497)
T ss_pred heeehhhhHHHHHhhh-hhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6655555555555444 44544 345668889999999999998877665544 33344333222222222222211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC
Q 000505 507 ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK 585 (1458)
Q Consensus 507 ~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~ 585 (1458)
. .+....+....-+..+.+|.+...-.-++...+..|++.+......+-|+++-.+++.+.+..+- ..+....++-.
T Consensus 179 ~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~ 256 (497)
T COG5265 179 T--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLW 256 (497)
T ss_pred H--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcccc
Confidence 1 11222233333445678999999999999999999999999999999999999999988887654 22221111111
Q ss_pred -CCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---
Q 000505 586 -ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--- 660 (1458)
Q Consensus 586 -~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--- 660 (1458)
.....|.+++++|.|++. .|.|++ ++.+++|+.++|+|++|+||||+++.|.+.+++.+|.+ .++|+
T Consensus 257 ~~~~g~v~F~~V~F~y~~~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qdir 328 (497)
T COG5265 257 PVRLGAVAFINVSFAYDPR-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIR 328 (497)
T ss_pred ccccceEEEEEEEeecccc-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchhHH
Confidence 234579999999999875 789999 99999999999999999999999999999999999986 88874
Q ss_pred ----------EEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 661 ----------KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 661 ----------~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
||.|||+..+||.|+..||.+|+|- .++...++.++.++...++.+|+|.+|.+||+|-.||||+||||
T Consensus 329 ~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 329 DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 6999999999999999999999875 34556677888889999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1458)
++||++.++|+|++|||.|||||.||.+.|- ..++...+|+|.+++.|+++.+-.||.|+||+||+|++.|+++|++.
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq-~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~- 486 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQ-AALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA- 486 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHH-HHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH-
Confidence 9999999999999999999999999987774 45677778999999999999999999999999999999999999998
Q ss_pred cchHHHH
Q 000505 810 QNSELVR 816 (1458)
Q Consensus 810 ~~~~~~~ 816 (1458)
.++.+.+
T Consensus 487 ~~g~ya~ 493 (497)
T COG5265 487 AGGLYAE 493 (497)
T ss_pred cCChHHH
Confidence 5655544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-47 Score=437.39 Aligned_cols=194 Identities=24% Similarity=0.392 Sum_probs=161.5
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|.++||+|+|+++ |.++++++|-|.++++|++|||||+|||||++++.+.+.|+.|.|.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 48999999999865 479999999999999999999999999999999999999999988643221 233
Q ss_pred EEcc---CCCCccccHHHhcCc-CC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1287 IIPQ---DPMLFQGTVRTNLDP-LE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1287 iIpQ---dp~LF~gTIR~NLdp-~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
+.-| +-.-++-|.-+++.| +. .-..+++...|.++||..-. .+.++ ++||+|||.|+++||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~------q~~p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA------QVVPM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc------cccch----hhcccccchhHHHHHHHhc
Confidence 3334 334566677777755 33 35667888899999997433 34455 4799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+|.||||||||++||.+|-..+.++|.+. +.+||+|+|+...|.. +++|.+.++|.+..++
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecC
Confidence 99999999999999999999999999874 5599999999999977 8999999999987653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=381.68 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=193.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC-CCHHHHhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-IGLQDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~-i~l~~LR~~i 1285 (1458)
-|+++|++.+|... .||||||++|++||++.|+||||||||||+++|.+|.+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999753 59999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEEccCCCCccc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
|+|+|...||+. |+-+|+... ...+ .+.-.+.|+++||.+....-| ..|||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999987 999998632 1222 233466789999998877766 36899999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
|||.-+|+|+++|||||+|||+.-..+.+++++.. .+.|.|+|||.+....+ +|||+.||+|+++|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998865 56799999999999987 99999999999999999999998876
Q ss_pred Ch
Q 000505 1435 SS 1436 (1458)
Q Consensus 1435 s~ 1436 (1458)
+.
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=409.95 Aligned_cols=240 Identities=48% Similarity=0.771 Sum_probs=224.1
Q ss_pred CCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhc
Q 000505 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1458)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1283 (1458)
..|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754346999999999999999999999999999999999999999999999999999998889999
Q ss_pred ceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+++|+||+|.+|++|+++|+++.....+++++++++..++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876545667789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+.+++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998767899999999999999999999999999999999999998777888877653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=397.00 Aligned_cols=224 Identities=28% Similarity=0.477 Sum_probs=194.9
Q ss_pred EEEEeeeEEeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---HHHH
Q 000505 1208 IELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDL 1281 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~L 1281 (1458)
|+++||++.|... ...+|+||||+|++||+.||+|+||||||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999762 356999999999999999999999999999999999999999999999999888776 5567
Q ss_pred hcceEEEccCCCCcc-ccHHHhcC-cCC--CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1282 RSRLSIIPQDPMLFQ-GTVRTNLD-PLE--QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
|++||+|+|++-|++ -||.+|+. |.. ..+.+ .+.+.|+.+||.|...+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 59999996 442 34444 4567888888877655444 57999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++.. -+-||++|||.++.+++ ||||.||++|+++|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999888643 47899999999999987 9999999999999999999999
Q ss_pred hcCCChH-HHHHH
Q 000505 1431 EDNSSSF-SKLVA 1442 (1458)
Q Consensus 1431 ~~~~s~F-~~l~~ 1442 (1458)
.++.... ++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 8885433 33443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=407.05 Aligned_cols=193 Identities=22% Similarity=0.333 Sum_probs=165.1
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcc
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1458)
...+++.+|+|.|.|+.++.++++++.+..-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 446899999999999887899999999999999999999999999999999999999999988876 678
Q ss_pred eEEEccCCCCccccHHHhcC-------cCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQGTVRTNLD-------PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLd-------p~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|++-.|..+=| ..-|.. -++..+++|+.+.|...|+..-+.. .+ + ..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~-----~s-i----~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELAL-----QS-I----ASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhh-----cc-c----cccCCcchhHHHHHH
Confidence 99999977533 222221 1233499999999999888654432 22 2 459999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
....+|.+|||||||+.||.++-..+-++|+.. +.-||+|+|+.+.+.. |+.+++.++|+|.-+
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 999999999999999999999999999999874 3479999999999976 999999999999763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=397.15 Aligned_cols=234 Identities=31% Similarity=0.541 Sum_probs=215.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+.+..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+.+..+|.++++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997543 34566778888889999999999999999888888999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000505 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~ 1442 (1458)
||||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999865 567777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=391.26 Aligned_cols=221 Identities=60% Similarity=0.967 Sum_probs=209.2
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975444699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000505 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1458)
+|+||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998777778889999999999999999999999999989999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecCh
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p 1426 (1458)
|+|||||++||+.+.+.+.+.|++..++.|||+++|+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=411.60 Aligned_cols=260 Identities=21% Similarity=0.307 Sum_probs=218.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEeCCc
Q 000505 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAR 603 (1458)
Q Consensus 525 ~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~i~~~~fsw~~~ 603 (1458)
++++++++|++++.|+.+..|+..+|..... ..|++.|+..+| +.....+ ..+....|+++|++++|+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 5689999999999999999999988866543 569999998766 2211111 11234579999999999743
Q ss_pred ccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEE---------------CCEEE
Q 000505 604 EENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKV---------------HGKKA 662 (1458)
Q Consensus 604 ~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~---------------~g~~a 662 (1458)
..+.|++ ||+|++||+++|+|+||||||||+++|+|+++ |++|++ .+ .+.++
T Consensus 94 ------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i~ 166 (329)
T PRK14257 94 ------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRIG 166 (329)
T ss_pred ------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccEE
Confidence 3468999 99999999999999999999999999999986 468875 43 34589
Q ss_pred EEcCCCCCCCCcHHHHHhcCCCCC----HH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 663 YVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 663 yv~Q~~~i~~~Ti~enI~fg~~~~----~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
||||+||++++|++|||.|+..++ ++ .|+++++.|+|..+++ +.+++++.+|||||||||+||||
T Consensus 167 ~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 167 MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999875332 22 2677788888765543 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
++++|+|+||||||++||+++.++ +.+++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++..
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999887 46678877778999999999999887 99999999999999999999875
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=367.60 Aligned_cols=220 Identities=26% Similarity=0.428 Sum_probs=198.2
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC-----cEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-----GRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~-----G~I~IDG~dI~~--i~l 1278 (1458)
..++++|+++.|.. ..+|+|||+.|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 459999999999999999999999999999999999999875 999999999977 578
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcCC---C----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
-.||+++|+|.|.|.-|..||++|+.... . .-||-+.++|+++.|||.|.. .|+ +.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~----~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLH----KSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hhh----CCccCCChhHHH
Confidence 89999999999999999999999997531 1 224567889999999999864 343 445679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||||||||.-+|+||+||||||+||+-+...|.+.|.+..++-|||+|||.+.-... +|+...+-.|+++|+|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999899999999999998755 9999999999999999999999
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=370.66 Aligned_cols=218 Identities=30% Similarity=0.477 Sum_probs=195.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+|+||+++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCccc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|-|.--||.. ||.+|+..-. ..+ ++++.+.++.+||. ++..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999987 9999996321 223 44567888889985 4666655 458999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
||..+|+||+||||.++||+-|...+|+-+.+.. -++|+|+|||+++... -+|||.+|++|+++.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999887643 3789999999999865 499999999999999999999999988
Q ss_pred ChHH
Q 000505 1435 SSFS 1438 (1458)
Q Consensus 1435 s~F~ 1438 (1458)
..|-
T Consensus 229 n~FV 232 (309)
T COG1125 229 NDFV 232 (309)
T ss_pred HHHH
Confidence 7773
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=384.37 Aligned_cols=231 Identities=33% Similarity=0.539 Sum_probs=211.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
+||+|.+|..|+++|+.... .++.+++.+.++.+++.+++..+|.++++.......+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997543 34566777888889999999999999999888888999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000505 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~ 1439 (1458)
+|||||++||+.+...+.+.|++..++.|||++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999988778999999999999988999999999999999999999864 455543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=376.08 Aligned_cols=207 Identities=61% Similarity=0.972 Sum_probs=188.4
Q ss_pred CCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH
Q 000505 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1281 (1458)
||..+.++++|++++|+....++++|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
|++++|+||+|.+|++|+++|+..+..++++++.++++ +......||+||+||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998765555555555443 234456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecCh
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p 1426 (1458)
+|++|+|||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=381.41 Aligned_cols=226 Identities=38% Similarity=0.618 Sum_probs=209.4
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|.|+++|++++|... .++++|+||++++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999632 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCCCccccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1286 SIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
+|+||+|.+|.+|+++|+.... ...++++.++++.+++.+++..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345677888999999999999999999999888889999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
+|+|||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999998888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=380.97 Aligned_cols=233 Identities=36% Similarity=0.604 Sum_probs=213.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999753 345677788899999999999999999999998888999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000505 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~~ 1442 (1458)
+|||||++||+++...+.+.|++..++.|||+++|+++.+..||++++|++|++++.|+++++.+ ..+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence 99999999999999999999988766789999999999998899999999999999999999886 4566665544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=397.35 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=191.3
Q ss_pred EEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---Hh
Q 000505 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1282 (1458)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCCCcc-ccHHHhcCc-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1283 SRLSIIPQDPMLFQ-GTVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp-~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
++|++|||++.+|. .|+++|+.. . ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 699999962 2 1223 234678899998876544333 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||+.+|+||+||||||+||+.|...|.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7899999999999966 99999999999999999999987
Q ss_pred cCCChH
Q 000505 1432 DNSSSF 1437 (1458)
Q Consensus 1432 ~~~s~F 1437 (1458)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 665544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=379.12 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=210.0
Q ss_pred EEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1208 IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
|+++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000505 1287 IIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1458)
|+||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 23456678888899999999999999999988888899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l 1440 (1458)
|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|+++++.+. .+..+.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHH
Confidence 9999999999999999999999987678999999999999989999999999999999999998853 3444443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=374.58 Aligned_cols=213 Identities=31% Similarity=0.523 Sum_probs=188.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.||.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 3789999999973 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-ccccHHHhcC----c----CCCCC--HH-HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1287 IIPQDPML-FQGTVRTNLD----P----LEQHS--DQ-EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1287 iIpQdp~L-F~gTIR~NLd----p----~~~~s--de-eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
|+||++.. |.-||+|-+. | +...+ |+ .+.+||+.+++.++..+ .+. .||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-------~~~----~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-------PVD----ELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-------ccc----ccChhHHHHHH
Confidence 99999754 4558888764 2 22222 33 47888999999887643 343 49999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti-~~~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||.++|+||+|||||++||....-.+++.+++.. ++.|||+|.|+++.. +.||++++|++|+++..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999865 469999999999876 5599999999999999999999885
Q ss_pred c
Q 000505 1432 D 1432 (1458)
Q Consensus 1432 ~ 1432 (1458)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=371.96 Aligned_cols=209 Identities=30% Similarity=0.456 Sum_probs=184.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+.+ + ||+||||++++||.+||+||||||||||+++++|++.|++|+|.++|.+++.... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999865 4 9999999999999999999999999999999999999999999999998766432 57999
Q ss_pred EEccCC---CCccccHHHhcCcCC--------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1287 IIPQDP---MLFQGTVRTNLDPLE--------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1287 iIpQdp---~LF~gTIR~NLdp~~--------~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
||||.. .-|.-||++-+.... . .+.+++.+||+++++.++. |.++++ |||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHHH
Confidence 999965 357889999876431 1 1247899999999999875 455664 99999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+.|||||+++|++|+|||||+++|+.++..|.+.|++..+ +|||++|+|+++.+++ +|+|+.| ++++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999988764 8999999999999976 9999999 57889999999998
Q ss_pred hc
Q 000505 1431 ED 1432 (1458)
Q Consensus 1431 ~~ 1432 (1458)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=374.35 Aligned_cols=219 Identities=32% Similarity=0.531 Sum_probs=201.1
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|.|+++|++++|+....++++|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
+|+||+|.+|..|+++|+... ...+.+++.++++..++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999754 2345667888999999999999999999999988889999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000505 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g 1424 (1458)
+|||||||++||..+...+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988789999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=414.33 Aligned_cols=199 Identities=25% Similarity=0.322 Sum_probs=168.2
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEEcCeeCCCCCHHHHhcceEEEccCCC-Ccc
Q 000505 1220 TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ 1296 (1458)
Q Consensus 1220 ~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~ 1296 (1458)
+....|+|||=-++||--.|++|.||||||||++.|.+-.+ ..+|+|+|||.+..+ +..++++|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999999764 347999999998765 678999999999874 545
Q ss_pred ccHHHhcCc------CCCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC-CE
Q 000505 1297 GTVRTNLDP------LEQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK-RI 1365 (1458)
Q Consensus 1297 gTIR~NLdp------~~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~-~I 1365 (1458)
-||||-|.. -.+.+++| +.++++..+|.++- |..||.-|..||+.||.||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 599999852 13445544 56677777776553 56799989999999999999999999999 89
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh--hhcCEEEEEeC-CEEEEecChhH
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV--IDNDLVLVLDE-GKVLEYDSPRQ 1428 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti--~~~DrVlvL~~-G~ivE~g~p~~ 1428 (1458)
|.||||||+||+++...|.+++|+.. .|+||++.-|+++.. +.+|+++.|++ |+.|.+|++-+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999854 689999999998864 56999999975 68999988544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=357.46 Aligned_cols=225 Identities=28% Similarity=0.446 Sum_probs=189.2
Q ss_pred cEEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-HHHHhc
Q 000505 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~ 1283 (1458)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997643 15999999999999999999999999999999999999999999999997766543 346788
Q ss_pred ceEEEccCCCC-c--cccHHHhcC-cCCC----CCHHHHHHHHHHcCcHHHH-HhcccccCccccCCCCCCChhHHHHHH
Q 000505 1284 RLSIIPQDPML-F--QGTVRTNLD-PLEQ----HSDQEIWEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1284 ~i~iIpQdp~L-F--~gTIR~NLd-p~~~----~sdeeI~~aL~~~~L~~~i-~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
.+.+|+|||.- + .-||++-|. |... -..++++++|+.+||.+-. .+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999952 2 226666663 3322 2355699999999997644 3333 359999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCC--cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~--~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||.-+|++||||||||+||....+.|.+.+.+..++ -|.|+|||++..+.. ||||+||++|+++|.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999876654 499999999999977 99999999999999999999997
Q ss_pred cCCChHHHHHH
Q 000505 1432 DNSSSFSKLVA 1442 (1458)
Q Consensus 1432 ~~~s~F~~l~~ 1442 (1458)
.+...+.+...
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 75556655443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.14 Aligned_cols=211 Identities=31% Similarity=0.493 Sum_probs=184.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC-----CCCCcEEEEcCeeCCCCC--HHH
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV-----EPSGGRILIDGVDISMIG--LQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----~p~~G~I~IDG~dI~~i~--l~~ 1280 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhcceEEEccCCCCccccHHHhcCcCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 13457788888888765443221 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
++|||||+++|++|+|||||++||+++...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.11 Aligned_cols=224 Identities=30% Similarity=0.500 Sum_probs=194.9
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HH
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DL 1281 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~L 1281 (1458)
.-.|++++|+++|.. ..|++||||+|++||..||+|+||||||||++++.|+..|++|+|.|+|.||.+++-. .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 346999999999964 4699999999999999999999999999999999999999999999999999998864 57
Q ss_pred hcceEEEccCCCCccc-cHHHhcC-cCCCC---CHHHHH----HHHHHcCcHHHHH-hcccccCccccCCCCCCChhHHH
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIW----EVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLd-p~~~~---sdeeI~----~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
|+++|++.|...||+. ||+||+. |..+| +++++. .-|+.+||...+. ..| +.||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 9999999999999987 9999996 55444 455443 4567788876632 233 459999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|++||||+.-+|+||++|||||+|||-+...+-+.|++.. -+.|+|+|||+++++.. ||||+++.+|+|+-.|+|++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999988887653 37899999999999976 89999999999999999999
Q ss_pred HhhcCCChHHHHH
Q 000505 1429 LLEDNSSSFSKLV 1441 (1458)
Q Consensus 1429 Ll~~~~s~F~~l~ 1441 (1458)
|.+.++...++.+
T Consensus 233 l~~sd~P~v~qf~ 245 (263)
T COG1127 233 LLASDDPWVRQFF 245 (263)
T ss_pred HHhCCCHHHHHHh
Confidence 9988776555544
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=389.81 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=184.3
Q ss_pred CccEEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC-----
Q 000505 1205 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----- 1276 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----- 1276 (1458)
...|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34599999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred -----------CHHHHhcceEEEccCC--CCccccHHHhcCcCC---CCCHHH----HHHHHHHcCcHHHHHhcccccCc
Q 000505 1277 -----------GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLAEIVRQDQRLLDA 1336 (1458)
Q Consensus 1277 -----------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sdee----I~~aL~~~~L~~~i~~lp~gLdt 1336 (1458)
....+|++++|+||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 689999999996421 223333 233444444421 2
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEE
Q 000505 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLV 1414 (1458)
Q Consensus 1337 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlv 1414 (1458)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||+|++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 2445567899999999999999999999999999999999999999999998753 5789999999999874 5999999
Q ss_pred EeCCEEEEecChhHHhhc
Q 000505 1415 LDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1415 L~~G~ivE~g~p~~Ll~~ 1432 (1458)
|++|++++.|+|++++++
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=348.50 Aligned_cols=202 Identities=29% Similarity=0.378 Sum_probs=169.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1458)
.|+++|.+-+|.. ..+|++ |++|++||+++||||+||||||||++|.|+.++++|++ .++|.
T Consensus 2 mi~i~~l~K~fg~--------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC--------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 4789999988864 468999 99999999999999999999999999999999999996 88883
Q ss_pred ------EEEEcCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 661 ------KAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 661 ------~ayv~Q~~~i~~-~Ti~enI~fg~~----~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
+|+|+|+..+|. .||.|||..+.- ..+ ++-.+.++..+|.+..+ .....|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHH
Confidence 589999988864 699999998742 222 22233444555544443 4456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccch
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1458)
||||||||||.-+|+++|+|||||||||+....+.+-.......|.|.|+|||++.|... ||||+.|++|+|++.|+++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999888876433444468999999999999987 9999999999999999999
Q ss_pred hhhhhcc
Q 000505 805 DLIADQN 811 (1458)
Q Consensus 805 ~l~~~~~ 811 (1458)
++..++.
T Consensus 222 ~~f~~p~ 228 (240)
T COG1126 222 EFFDNPK 228 (240)
T ss_pred HHhcCCC
Confidence 9987433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.17 Aligned_cols=212 Identities=31% Similarity=0.443 Sum_probs=184.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH---HHHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999963 359999999999999999999999999999999999999999999999999987764 567899
Q ss_pred eEEEccCCCCccc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+... ..+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-------LYP----AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHHHHHH
Confidence 9999999999986 999999632 1123 234567778877755432 223 4699999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998643 7899999999999876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=368.45 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=194.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC-CCCHHHHhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~-~i~l~~LR~~i 1285 (1458)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 77999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEccCC--CCccccHHHhcCcCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
|+|.|+| .+|..||.+.+.... ..+.+ .+.++|+.+++.++..+.| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997542 23443 4778899999987743333 57999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCC--cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~--~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
.+|..+|+|||||||||+||+...+.+.+.+++..++ .|+|+|||+++.+.. |||+++|++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999999987544 699999999999988 9999999999999999999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=380.17 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=196.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++||+.+|.+.. +++|+|++|+.||.++++||||||||||+++|.||.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999998886 7899
Q ss_pred EEccCCCCccc-cHHHhcCcC-C------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
+|+|++.||+. ||++|+... . +.-++++.++++..++.+...+.|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999987 999999742 2 1235678899999999999888874 589999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|.++|++++||||.|+||......+...|++..+ +.|+|.|||+....+. +|||.||.+|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999888887543 5799999999888776 999999999999999999999999887
Q ss_pred hH
Q 000505 1436 SF 1437 (1458)
Q Consensus 1436 ~F 1437 (1458)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 77
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=371.41 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=192.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..++|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCccccHHHhcCcCC---CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000505 1287 IIPQDPMLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~---~~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1458)
|+||+|.+|+.|+++|+.... ...++++.+.++..++. +... .....||+|||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997422 22345677788887774 2221 23457999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000505 1363 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439 (1458)
Q Consensus 1363 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~ 1439 (1458)
|++|||||||++||..+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++.+++.++...+.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998754 37899999999999875 9999999999999999999998765544544
Q ss_pred H
Q 000505 1440 L 1440 (1458)
Q Consensus 1440 l 1440 (1458)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=373.23 Aligned_cols=219 Identities=24% Similarity=0.415 Sum_probs=192.5
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCCHHHHhc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~ 1283 (1458)
.|+++|++++|+. +++|+|+||++++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEccCCCCccccHHHhcCcCC---C------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1284 RLSIIPQDPMLFQGTVRTNLDPLE---Q------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NLdp~~---~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+..+ ....+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1233577888998886655432 23345689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987678999999999998864 9999999999999999999998654
Q ss_pred C
Q 000505 1434 S 1434 (1458)
Q Consensus 1434 ~ 1434 (1458)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=379.67 Aligned_cols=215 Identities=26% Similarity=0.417 Sum_probs=190.6
Q ss_pred cEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+| .++..|+++|+.... ..+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356679999997421 122 345788899999877654433 47999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988643 7899999999999988999999999999999999998764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=368.43 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=197.4
Q ss_pred CCccEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHh
Q 000505 1204 SSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR 1282 (1458)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 23699999999999999999999999999999999999999999999999999888777888
Q ss_pred cceEEEccCCCCccccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1283 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
++++|+||+|.+|++|+++|++.. .....+++++..+..++.+++..+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999843 3344556677777788899999998889888888889999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~i 1420 (1458)
+|++|+|||||++||+++...+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=371.14 Aligned_cols=467 Identities=20% Similarity=0.188 Sum_probs=329.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChh------hHHHHHhhhhhHHhhhh
Q 000505 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS------RILNRCSTDQSTVDTDI 1001 (1458)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G------~ilnR~s~D~~~id~~l 1001 (1458)
..+.+|..++++.......+.++......+.-..+-..++++-+..- .||--...| ..=+|+..|+...-..-
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 45677888888888888888888888888888888888888888766 444443333 23368888887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 000505 1002 PYRLAGLAFALIQLLSIIILMSQAA--------------WQVFP-LFLVILG----ISIWYQAYYITTARELARMVGTRK 1062 (1458)
Q Consensus 1002 ~~~l~~~~~~~~~~i~~~~v~~~~~--------------~~~~~-v~~p~~~----l~~~~~~~y~~~sr~l~rl~~~~~ 1062 (1458)
-.....++.++++++...+++.-.+ +.+++ +++..++ +..++.+...+-.-+-.+.++.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 5555566666666666555554211 11111 1111111 122333334444444444444444
Q ss_pred chHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCcC
Q 000505 1063 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAID 1141 (1458)
Q Consensus 1063 spl~~~~~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~ 1141 (1458)
. ...-.-+....|-.|+.|+...++..+..+.-.+.+......+.++...-...+-+.+.+..+ .+-....|.++
T Consensus 246 ~----~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 Y----SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred H----HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 3 344455677788888888777666666555555444444444444444333333222211111 12223456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC------CCCCccccCCCCCCCCCCCCccEEEEeeeE
Q 000505 1142 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI------PSEAPLVIKNSRPSPEWPSSGKIELENLLV 1215 (1458)
Q Consensus 1142 ~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~------~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~ 1215 (1458)
-|-...+.+-..++...+.|++.++..+.+-.....|+.++.+. +.+.+.... .+....-.....|+++|+++
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 77777777777788889999999999999999999999998741 222111100 00000000146799999999
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCc
Q 000505 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1458)
Q Consensus 1216 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1295 (1458)
.-+++. ..+++++|.++|||.+-|.|+||||||||+++|.|+.+.-+|+|.+-. -+.+-++||.|.+=
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987655 689999999999999999999999999999999999999999987651 12579999999999
Q ss_pred cccHHHhcC-cCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 000505 1296 QGTVRTNLD-PLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1458)
Q Consensus 1296 ~gTIR~NLd-p~~--~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaT 1372 (1458)
.||+||-|. |.. .++|+|+.++|.+|+|.+++.++.+ .+. =..-||+||||||++||.+|+||++++|||||
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 999999996 543 3899999999999999999998743 222 23459999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000505 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1373 sslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~ 1417 (1458)
|+||.+++..+.+.++++..++|||.|+||.....-.++.+-+++
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999999999777666777666543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=388.18 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=189.7
Q ss_pred EEEEeeeEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---Hh
Q 000505 1208 IELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1282 (1458)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEccCCCCcc-ccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
++++|+||+|.+|. .|+++|+... ...++ +++.+.++..++.+.... . ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~----~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-------Y----PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-------C----hhhCCHHHHHHHH
Confidence 89999999999986 6999999632 12222 356677777777654432 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999987
Q ss_pred cCCChHHH
Q 000505 1432 DNSSSFSK 1439 (1458)
Q Consensus 1432 ~~~s~F~~ 1439 (1458)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 65544433
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=353.65 Aligned_cols=204 Identities=29% Similarity=0.435 Sum_probs=175.9
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HH-
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DL- 1281 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~L- 1281 (1458)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|.|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996543 3699999999999999999999999999999999999999999999999999999853 33
Q ss_pred hcceEEEccCCCCccc-cHHHhcC-c--CCCCC----HHHHHHHHHHcCcHHHHH-hcccccCccccCCCCCCChhHHHH
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLD-P--LEQHS----DQEIWEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~s----deeI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
|++||+|+|+..|++. |++||+. | +.... .+.+.+.++.+++.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999998876 9999987 2 22222 345666777778876544 223 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEE
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE 1422 (1458)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3689999999999999999999999999543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=366.42 Aligned_cols=210 Identities=24% Similarity=0.355 Sum_probs=182.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++||+++|+.+..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ..++|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999965324699999999999999999999999999999999999999999999999998764 3667889999
Q ss_pred EccCCCCc-cccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLF-QGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHHH
Confidence 99999998 579999986321 122 24567788888876543 3333 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999865 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=386.12 Aligned_cols=218 Identities=22% Similarity=0.364 Sum_probs=191.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+.+ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++..++.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999432 4599999999999999999999999999999999999999999999999999987764 47899
Q ss_pred EEccCCCCccc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
||||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999742 1 123 245778899999987766555 3699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 6899999999998865 999999999999999999999988765
Q ss_pred hHH
Q 000505 1436 SFS 1438 (1458)
Q Consensus 1436 ~F~ 1438 (1458)
.|.
T Consensus 229 ~~~ 231 (356)
T PRK11650 229 TFV 231 (356)
T ss_pred HHH
Confidence 553
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=347.69 Aligned_cols=212 Identities=26% Similarity=0.416 Sum_probs=189.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---HHHHhc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~ 1283 (1458)
.|+++||+.+|+. ...+|+||||+|++||.|+|+|+||||||||+++|.|+++|++|+|.++|.++.... ++++|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4899999999974 456999999999999999999999999999999999999999999999999999988 677889
Q ss_pred ceEEEccCCCCccc-cHHHhcCc------------CCCCCHH---HHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDP------------LEQHSDQ---EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp------------~~~~sde---eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
++|+|.|.|-|-+. |+-+|+.- |+-++.+ ...++|+++|+.+..-.. .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999988765 89999731 2344443 478899999998876443 247999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1348 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
||+||++|||||.++|+|++-|||||+||+.+.+.|++.|++.. .+.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999754 57899999999999876 9999999999999999
Q ss_pred ChhHHh
Q 000505 1425 SPRQLL 1430 (1458)
Q Consensus 1425 ~p~~Ll 1430 (1458)
+++||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=378.21 Aligned_cols=214 Identities=32% Similarity=0.492 Sum_probs=185.1
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--HHHHh
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR 1282 (1458)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996432 36999999999999999999999999999999999999999999999999998743 46789
Q ss_pred cceEEEccCC--CCccccHHHhcCcCC---CCCH----HHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHH
Q 000505 1283 SRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1283 ~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
++++|+||+| .+|..|+++|+.... ..++ +++.++++.++|. +. .|. ....|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~~----~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-------KDK----SPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-------ccC----CcccCCHHHHH
Confidence 9999999998 578899999996421 2333 3467778888774 22 222 33579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998643 689999999999985 499999999999999999999
Q ss_pred Hhhc
Q 000505 1429 LLED 1432 (1458)
Q Consensus 1429 Ll~~ 1432 (1458)
++++
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.61 Aligned_cols=222 Identities=26% Similarity=0.421 Sum_probs=191.4
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CC
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1277 (1458)
.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. .......+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999642 1222 3457788888887544322 1233456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCCC
Q 000505 1429 LLEDNSS 1435 (1458)
Q Consensus 1429 Ll~~~~s 1435 (1458)
+.+.+.-
T Consensus 242 ~~~~~~~ 248 (260)
T PRK10744 242 IFTKPAK 248 (260)
T ss_pred HHhCCCc
Confidence 9865443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=384.26 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=191.6
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999963 4589999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEccCCCCccc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
++|+|++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 122 346778888888876654333 469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
||+++|+||+||||||+||+.+...+++.|++..+ +.|+|+|||+.+.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988654 7899999999999865 99999999999999999999998887
Q ss_pred ChH
Q 000505 1435 SSF 1437 (1458)
Q Consensus 1435 s~F 1437 (1458)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=371.13 Aligned_cols=222 Identities=24% Similarity=0.346 Sum_probs=191.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3599999999999999999999999999999999999997 48999999999863 3455
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC----CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE----QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~----~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|..|+++|+.... .. .++.+.++++.+++.+.+ ++.+|+. ..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHHH
Confidence 7889999999999999999999996321 11 234577788888875443 2345554 4579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=375.24 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=187.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 678899999997421 122 345788889999876654443 369999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||+++|++|+|||||++||+.+...+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 4789999999999985 49999999999999999987653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=358.50 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=182.7
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcc
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1458)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
++|+||+|.+|++|+++|+......++++.+++++.+++.+++...|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000505 1365 ILVLDEATASIDTATDNVIQQ-TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~-~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~ 1419 (1458)
+++|||||++||+++.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566553 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=336.46 Aligned_cols=207 Identities=27% Similarity=0.427 Sum_probs=186.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---Hhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1284 (1458)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|||||||||++++|++...|+.|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999877 77999999999999999999999999999999999999999999999999999988665 8999
Q ss_pred eEEEccCCCCccc-cHHHhcC-cCC--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLD-PLE--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLd-p~~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
||+|.||--|... |+.||+. |.. ..+ .+++.++|+.+||.+-...+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999987765 9999986 331 222 3457889999999999988884 5899999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhc-CEEEEEeCCEEEEecCh
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~-DrVlvL~~G~ivE~g~p 1426 (1458)
||+..+|++|+-||||-+||+++...|++.+.+.. .+.||++.||+.+.+.++ -|++.+++|+++..+.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998754 578999999999999875 58999999999987764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=375.09 Aligned_cols=215 Identities=25% Similarity=0.424 Sum_probs=191.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|+||+| .++..|+++|+.... ..+ ++++.++++.++|.+++...| ..||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 466789999996421 123 244777888888877665544 369999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+.+|+||+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998653 7899999999999988999999999999999999988753
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=366.47 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=182.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EccCCCCcc-ccHHHhcCcCCC---C----C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPLEQ---H----S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~~---~----s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
+||+|.+|. .|+++|+..... . . ++++.++++..++.+..... ..+||+|||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999986 599999974211 1 1 23456777887776544332 24699999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999987643 6899999999998765 999999999999999999999865
Q ss_pred CC
Q 000505 1433 NS 1434 (1458)
Q Consensus 1433 ~~ 1434 (1458)
+.
T Consensus 228 ~~ 229 (239)
T cd03296 228 PA 229 (239)
T ss_pred CC
Confidence 43
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=368.32 Aligned_cols=221 Identities=29% Similarity=0.460 Sum_probs=190.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCCC--CHHH
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~~ 1280 (1458)
|+++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4566
Q ss_pred HhcceEEEccCCCCccccHHHhcCcC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
.|++++|+||+|.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .++. ...+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLHD----SALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---HhhC----CcccCCHHHHHH
Confidence 78999999999999999999999631 11 12 3456778888888644321 1233 335799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999998865 99999999999999999999987
Q ss_pred cCCChH
Q 000505 1432 DNSSSF 1437 (1458)
Q Consensus 1432 ~~~s~F 1437 (1458)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.16 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=176.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1284 (1458)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred eEEEccCCCCccc-cHHHhcCcC---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~---~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++|+||+|.+|.. |+++|+... .. ..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998874 999999632 11 12456788899998876654433 36999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
|||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998763 47899999999999875 899999999975
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=369.65 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=189.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999875 3456
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC----CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999632 11 123567788888888654432 123344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=368.72 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=183.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---HHHHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~~ 1284 (1458)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 4568899
Q ss_pred eEEEccCCCCcc-ccHHHhcCcC------------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1285 LSIIPQDPMLFQ-GTVRTNLDPL------------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~------------~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
++|+||++.+|. .|+++|+... + ...++++.++++..++.+.. + .....||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-------Y----QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-------C----CCcccCCHH
Confidence 999999998887 5999999531 0 11234566777777775432 2 234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecC
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~ 1425 (1458)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 3789999999999998 499999999999999999
Q ss_pred hhHHh
Q 000505 1426 PRQLL 1430 (1458)
Q Consensus 1426 p~~Ll 1430 (1458)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=367.73 Aligned_cols=212 Identities=26% Similarity=0.436 Sum_probs=181.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH-hcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1458)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999988876664 67899
Q ss_pred EEccCCCCccc-cHHHhcCcCC----CC-------------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLE----QH-------------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
|+||+|.+|.+ |+++|+.... .. ..+++.++++..++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999987 9999985321 10 11234455555555332 23334579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p 1426 (1458)
||||++||||++++|++|+|||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998764 57899999999999866 999999999999999999
Q ss_pred hHHhhc
Q 000505 1427 RQLLED 1432 (1458)
Q Consensus 1427 ~~Ll~~ 1432 (1458)
+++.++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=366.09 Aligned_cols=214 Identities=28% Similarity=0.452 Sum_probs=185.5
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HHh
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1282 (1458)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEccCCCCcc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 5999998631 1122 34577888888886554332 2469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
||||++++|++|+|||||++||+.+...+.+.|++.. .++|||+++|+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999864 37899999999999865 99999999999999999999875
Q ss_pred c
Q 000505 1432 D 1432 (1458)
Q Consensus 1432 ~ 1432 (1458)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=367.61 Aligned_cols=217 Identities=24% Similarity=0.393 Sum_probs=186.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCCCcc-ccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+. ........+||+|||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999996 59999996321 122 3356677777776530 011223457999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
+++|++|+|||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 99999999999999999999999999999864 37899999999998755 99999999999999999999876544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=384.22 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=190.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|.. ..+|+|+||++++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEccCCCCcc-ccHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQ-GTVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~-gTIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||++.+|. .|+++|+... . ..+ ++++.++++..+|.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999997 5999999632 1 122 345777888888766554333 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|+++|++|+||||||+||..+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 6899999999999865 999999999999999999999988776
Q ss_pred hHH
Q 000505 1436 SFS 1438 (1458)
Q Consensus 1436 ~F~ 1438 (1458)
.|.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=367.78 Aligned_cols=222 Identities=28% Similarity=0.437 Sum_probs=191.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCCHHHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~l~~L 1281 (1458)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcceEEEccCCCCc-cccHHHhcCcCC---CC------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1282 RSRLSIIPQDPMLF-QGTVRTNLDPLE---QH------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF-~gTIR~NLdp~~---~~------sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
|++++|+||+|.+| ..|+++|+.... .. .++++.++++.+++.+.+. ..+|..+ .+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHHH
Confidence 99999999999755 579999996321 11 1346788888888865432 2344444 569999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999985 49999999999999999999998
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 7654434
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=384.16 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=182.2
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH----hcceEEEccCCCCccc
Q 000505 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG 1297 (1458)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1297 (1458)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 7899999999999985
Q ss_pred -cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1298 -TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1298 -TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
|+++|+... ...+ ++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999632 1122 355778888888876655444 469999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 000505 1370 EATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~ 1438 (1458)
||||+||+.+.+.+++.+++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998764 37899999999998755 999999999999999999999987654443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.22 Aligned_cols=219 Identities=26% Similarity=0.356 Sum_probs=194.6
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcc
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1458)
.+.|+++|++++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4569999999852 3599999999999999999999999999999999999999999999998 4
Q ss_pred eEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
++|+||+|.+|++|+++|+.......+.++.++++.+++.+.+..+|.+.++.+.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643445556778888899999999999999999988899999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 000505 1365 ILVLDEATASIDTATDNVIQQT-IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~-I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l~ 1441 (1458)
||||||||++||+++...+.+. +++..++.|||+|||+++.+..||+|++|++|+++++|+++++.+. .+.|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 9999999999999999988765 4555567899999999999988999999999999999999999854 34454433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=369.11 Aligned_cols=223 Identities=23% Similarity=0.450 Sum_probs=190.3
Q ss_pred CCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--
Q 000505 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM-- 1275 (1458)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~-- 1275 (1458)
|....|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34457999999999964 359999999999999999999999999999999999987 689999999999863
Q ss_pred CCHHHHhcceEEEccCCCCccccHHHhcCcCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1276 IGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1276 i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
.+..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .+|. ...+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~----~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLNE----SGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhCC----CcccCCHHH
Confidence 56678899999999999999899999997432 11 23456777888877543221 2333 345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeC-----------
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE----------- 1417 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~----------- 1417 (1458)
|||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||+|++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999987667899999999998865 999999996
Q ss_pred CEEEEecChhHHhhcCC
Q 000505 1418 GKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1418 G~ivE~g~p~~Ll~~~~ 1434 (1458)
|+++|.|+++++++++.
T Consensus 240 g~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 240 GYLVEFNETKKIFNSPK 256 (269)
T ss_pred ceEEEeCCHHHHHhCcC
Confidence 67999999999987553
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=367.30 Aligned_cols=211 Identities=28% Similarity=0.419 Sum_probs=182.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH---HHHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1458)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999622 459999999999999999999999999999999999999999999999999987654 447889
Q ss_pred eEEEccCCCCcc-ccHHHhcCcCC------------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1285 LSIIPQDPMLFQ-GTVRTNLDPLE------------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~~------------~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
++|+||+|.+|. .|+++|+.... . ..++++.++++.+++.+... . ...+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-------Q----RADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-------C----CcccCCHH
Confidence 999999998886 59999995310 1 11345677788887765432 2 33579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~ 1425 (1458)
||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 37899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000505 1426 PRQLL 1430 (1458)
Q Consensus 1426 p~~Ll 1430 (1458)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=368.28 Aligned_cols=219 Identities=30% Similarity=0.416 Sum_probs=187.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC--CCCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS--MIGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~--~i~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcceEEEccCCCCccc-cHHHhcCcC---CC--CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ--HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~--~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
++|++++|+||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .++ ....+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLN----DYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhc----cChhhCCHHH
Confidence 788999999999999976 999999631 11 11 2456777888777543321 123 3346799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000505 1429 LLEDNS 1434 (1458)
Q Consensus 1429 Ll~~~~ 1434 (1458)
+++++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 986543
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=369.00 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=191.0
Q ss_pred CCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--C
Q 000505 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--I 1276 (1458)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i 1276 (1458)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999964 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHHhcceEEEccCCCCccccHHHhcCcCC---CC--C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000505 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH--S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1277 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~--s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
+...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .++ ....+||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD---RLH----EPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH---Hhh----CCcccCCH
Confidence 4567889999999999999999999996311 11 1 3456788888888654421 122 33457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000505 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1348 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p 1426 (1458)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999865 899999999999999999
Q ss_pred hHHhhcCC
Q 000505 1427 RQLLEDNS 1434 (1458)
Q Consensus 1427 ~~Ll~~~~ 1434 (1458)
+++..++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986544
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=374.25 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=182.6
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----CHHH
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1280 (1458)
|+++||+++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhcceEEEccCC--CCccccHHHhcCcCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+|++++|+||+| .+|..|+++|+.... ..+.+ .+.++++.+++.. ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 899999999998 588899999996421 22332 3445555555531 1122345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+|.+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999864 4789999999999985 589999999999999999999
Q ss_pred Hhhc
Q 000505 1429 LLED 1432 (1458)
Q Consensus 1429 Ll~~ 1432 (1458)
++++
T Consensus 233 ~~~~ 236 (286)
T PRK13646 233 LFKD 236 (286)
T ss_pred HHhC
Confidence 8864
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=374.11 Aligned_cols=214 Identities=27% Similarity=0.389 Sum_probs=184.1
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----CCHHH
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1280 (1458)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCccccHHHhcCcCC---CCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHH
Q 000505 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
+|++++|++|+| .+|..|+.+|+.... ..+. +++.++++.+++. ++. + ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-------E----KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-------c----CCcccCCHHHH
Confidence 899999999998 789999999996321 1232 3466777777774 232 2 23357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998754 4789999999999885 499999999999999999999
Q ss_pred Hhhc
Q 000505 1429 LLED 1432 (1458)
Q Consensus 1429 Ll~~ 1432 (1458)
+.++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=369.91 Aligned_cols=215 Identities=27% Similarity=0.471 Sum_probs=187.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999644456999999999999999999999999999999999999999999999999998887788999999
Q ss_pred EEccCC--CCccccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|+||+| .++..|+++|+... ...+++ .+.+++++.++.++.... ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999642 123333 356677778876654433 2579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998643 4899999999999888999999999999999999998764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=337.96 Aligned_cols=471 Identities=21% Similarity=0.256 Sum_probs=342.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccccChhhHHHHHhhhhhHHhhhhHHHHHH
Q 000505 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1458)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ap~~ffd~tp~G~ilnR~s~D~~~id~~l~~~l~~ 1007 (1458)
.++.-|+++.....+...+........+.....+++.++.++++.+|+.-+++-..++++.++++|+..|. .-...+..
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHH
Confidence 34444555555555556666777788999999999999999999999999999999999999999999998 33334556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhhhhHHHHhhcchHH
Q 000505 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1458)
Q Consensus 1008 ~~~~~~~~i~~~~v~~~~~~~~~~v~~p~~~l~~~~~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G~~tIraf~~e~~ 1087 (1458)
+.++.+-.+++.+.+++.+|+.+.+.+..+++.++.+.+-++.--+-.+...+....+.++++.-+.|.+..+..+...+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 88888889999999999999998888877777766655444433333344445567788999999999999988765444
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHH---HHHHH
Q 000505 1088 FLLRSHSLID------DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL---NLNVL 1158 (1458)
Q Consensus 1088 f~~~~~~~~d------~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l---~l~~~ 1158 (1458)
........-+ +..+..........|-.+.+-.+..+++... ....-...+ .+.++.+ .+-..
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la----l~~~w~st~-----~a~tivlvlLflr~p 278 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA----LSLGWASTN-----VAATIVLVLLFLRTP 278 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhccchhh-----HHHHHHHHHHHHhhH
Confidence 3332211111 1111111122334454433322222221111 111000111 2222332 23455
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEE
Q 000505 1159 QAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKI 1238 (1458)
Q Consensus 1159 ~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Gekv 1238 (1458)
+..++.....+-...++.+||.++...|..+ ......+.|+| ..||++||.|.|.++. .-+..||++|+.||.|
T Consensus 279 L~s~vgilP~l~~AqvA~~kiakle~~~~~a--~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelv 352 (546)
T COG4615 279 LLSAVGILPTLLTAQVAFNKIAKLELAPYKA--DFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELV 352 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhcCCccc--cCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEE
Confidence 5666667777778888999999887633222 12222333445 4699999999998753 4578899999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHH
Q 000505 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1318 (1458)
Q Consensus 1239 gIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL 1318 (1458)
=|+|.|||||||++++|.|++.|++|+|++||.+++.=++++.|+-++-|.-|-+||+.++ -|-+..+.+.|..-|
T Consensus 353 FliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~L 428 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWL 428 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998654 343447788888778
Q ss_pred HHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHh--cCCcEE
Q 000505 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE--TSRCTV 1396 (1458)
Q Consensus 1319 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~--~~~~TV 1396 (1458)
++..+....+-. +|=-++ ..||-|||.|+++--|+|.+.+|+++||=-|.-||.=.+...+.+-.. -.|+||
T Consensus 429 qrLel~~ktsl~-d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 429 QRLELAHKTSLN-DGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHhhhhccc-CCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 777665543322 111111 358999999999999999999999999999999999998877665432 258999
Q ss_pred EEEecChhhhhhcCEEEEEeCCEEEEec
Q 000505 1397 ITVAHRIPTVIDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1397 I~IAHrl~ti~~~DrVlvL~~G~ivE~g 1424 (1458)
+.|+|+-+....+||++.|++|+++|.-
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999863
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.05 Aligned_cols=202 Identities=26% Similarity=0.416 Sum_probs=174.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 45999999999999999999999999999999999999999999999999997654 35778999
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|. .|+++|+... ...+ ++++.++++.+++.+...+.| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999998886 5999999632 1112 345677888888766543332 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||+++...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999998865 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=363.01 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=180.0
Q ss_pred cEEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---H
Q 000505 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1281 (1458)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCCCccc-cHHHhcCc---CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1282 R-SRLSIIPQDPMLFQG-TVRTNLDP---LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
| ++++|+||+|.+|.+ |+++|+.. +.... ++++.++++.+++.+...+ ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999999876 99999863 11222 2456778888877554322 235799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecC
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~ 1425 (1458)
++||||++++|+||+|||||++||+.+...+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4789999999999999999999999999998775
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=380.09 Aligned_cols=216 Identities=25% Similarity=0.419 Sum_probs=188.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCccc-cHHHhcCcC-C------CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~------~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999985 999999732 1 122 345677888888866544333 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988654 6899999999999766 99999999999999999999998
Q ss_pred cCCChH
Q 000505 1432 DNSSSF 1437 (1458)
Q Consensus 1432 ~~~s~F 1437 (1458)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 776554
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=372.17 Aligned_cols=214 Identities=30% Similarity=0.473 Sum_probs=185.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC--CCCHHHHhcc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSR 1284 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~ 1284 (1458)
-|+++|++++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 45999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred eEEEccCC--CCccccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1285 LSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1285 i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.++. |. ...+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-------~~----~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-------DK----PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-------hC----CcccCCHHHHHHHHH
Confidence 99999998 57889999999642 12232 3466777888876543 22 345799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||||+.+|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988653 789999999999997 5999999999999999999998863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=362.38 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=181.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+ .+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999963 3599999999999999999999999999999999999999999999999999876654 4458999
Q ss_pred EccCCCC-ccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPML-FQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~L-F~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 4679999996431 122 2345566666666432 2233457999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
+++|+||+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998864 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=347.91 Aligned_cols=178 Identities=35% Similarity=0.559 Sum_probs=166.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000505 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g 1424 (1458)
|||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999877789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=361.13 Aligned_cols=212 Identities=25% Similarity=0.423 Sum_probs=178.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH-hcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1458)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EEccCCCCccc-cHHHhcCcCCC-CCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLEQ-HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~-~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1458)
|+||+|.+|.+ |+++|+..... +.+ +++.++++..+ .++..++. ....||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~~----~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRKQ----LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhhC----chhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964321 111 12223333321 12223333 34579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1361 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++|++|+|||||++||+++...+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998764 47899999999998866 99999999999999999988763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=370.77 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=186.5
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH----hcc
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSR 1284 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~ 1284 (1458)
.++|++.+|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 458999999999999999999999999999999999999999999999999988765543 468
Q ss_pred eEEEccCCCCcc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++|+||+|.+|. .|+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 5999999631 111 2345778888888877655443 36999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
|||+++|+||||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 37899999999998865 9999999999999999999998766
Q ss_pred CChHH
Q 000505 1434 SSSFS 1438 (1458)
Q Consensus 1434 ~s~F~ 1438 (1458)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=358.91 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=178.1
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccCCCCccc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|+||+|.+|.+ |+++|+... ... .++++.++++..++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998531 112 23456778888888665433 23579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
|++++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47899999999998865 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.91 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=190.8
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEEcCeeCCCCCHHHHh
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~---G~I~IDG~dI~~i~l~~LR 1282 (1458)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996533459999999999999999999999999999999999999987 8999999999887777889
Q ss_pred cceEEEccCC--CCccccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1283 SRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1283 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999742 12333 34778888999877654443 47999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+|||||+++|++|||||||++||..+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988653 689999999999998899999999999999999999875
Q ss_pred c
Q 000505 1432 D 1432 (1458)
Q Consensus 1432 ~ 1432 (1458)
+
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=365.19 Aligned_cols=220 Identities=24% Similarity=0.403 Sum_probs=188.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc---CCC--CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---VEP--SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl---~~p--~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3599999999999999999999999999999999997 444 589999999998764 346
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC---CC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 788899999999999999999999631 11 123457788888887654422 122345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999865 9999999999999999999998
Q ss_pred hcCCC
Q 000505 1431 EDNSS 1435 (1458)
Q Consensus 1431 ~~~~s 1435 (1458)
+++..
T Consensus 234 ~~~~~ 238 (250)
T PRK14245 234 TNPEK 238 (250)
T ss_pred cCCCC
Confidence 76543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=367.36 Aligned_cols=221 Identities=24% Similarity=0.414 Sum_probs=188.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCCC--HHH
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMIG--LQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i~--l~~ 1280 (1458)
-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987643 346
Q ss_pred HhcceEEEccCCCCccccHHHhcCcC---CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78999999999999999999998632 11 12345677888888765322 1223344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999875 9999999999999999999998
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7665544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=347.40 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=185.3
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999976 5699999999999999999999999999999999999999999999999987443 45799
Q ss_pred EEccCCCCccc-cHHHhcCcCCC-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLEQ-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
||+|++.||.. ||++|+...-+ ...+.+.+.|+++||.++-...|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999998 99999863211 123468899999999998877763 589999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeC--CEE---EEec--ChhH
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDE--GKV---LEYD--SPRQ 1428 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~--G~i---vE~g--~p~~ 1428 (1458)
|+.+|+||+||||.++||..|...+|+-+.+.. .++||++|||+++... -+|||+||.+ |+| ++.+ .|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999887754 3589999999999865 4999999999 444 3333 333
Q ss_pred HhhcCCChHHHHHHHHHh
Q 000505 1429 LLEDNSSSFSKLVAEFLR 1446 (1458)
Q Consensus 1429 Ll~~~~s~F~~l~~~~~~ 1446 (1458)
...+..|..+.++-+.
T Consensus 224 --~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 --IRGDPEFLELREELLE 239 (248)
T ss_pred --cccChHHHHHHHHHHH
Confidence 2345668777766554
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.34 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=187.2
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-------
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG------- 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~------- 1277 (1458)
.+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 35999999999999999999999999999999999999999999999999986421
Q ss_pred ------HHHHhcceEEEccCCCCccc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1278 ------LQDLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1278 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
...+|++++|+||+|.+|.+ |+++|+... .... ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34678899999999999975 999999631 1112 345677788877755431 2234
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
..||+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998864 47999999999999986 999999999999
Q ss_pred EEecChhHHhhcCC
Q 000505 1421 LEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1421 vE~g~p~~Ll~~~~ 1434 (1458)
++.|+++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999886543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=374.97 Aligned_cols=223 Identities=23% Similarity=0.378 Sum_probs=188.7
Q ss_pred cEEEEeeeEEeCCC-----------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC
Q 000505 1207 KIELENLLVQYNPT-----------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~-----------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1275 (1458)
-++++|++++|+.. ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2368999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcceEEEccCC--CCc-cccHHHhcCc----CC-CCCH----HHHHHHHHHcCcHHHHHhcccccCccccC
Q 000505 1276 IGLQD---LRSRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1458)
Q Consensus 1276 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1458)
++.++ +|++++||||+| .+| ..||++|+.. +. ..+. +.+.++++.+++.+. .++.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~------~~~~---- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN------LINR---- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH------HhcC----
Confidence 87544 678999999999 477 4699999852 11 2333 334567777777321 1222
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 000505 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1417 (1458)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~ 1417 (1458)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2356999999999999999999999999999999999999999999987643 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCChHHH
Q 000505 1418 GKVLEYDSPRQLLEDNSSSFSK 1439 (1458)
Q Consensus 1418 G~ivE~g~p~~Ll~~~~s~F~~ 1439 (1458)
|+++|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876656655
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=366.43 Aligned_cols=222 Identities=25% Similarity=0.410 Sum_probs=189.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999998653 345
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+ +..++.+ ...||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~----~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET---SDRLKSP----ALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch---hhhhcCC----hhhCCHHHHHH
Confidence 678899999999999999999999632 1122 23467788888775432 1223443 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999866 99999999999999999999987
Q ss_pred cCCChH
Q 000505 1432 DNSSSF 1437 (1458)
Q Consensus 1432 ~~~s~F 1437 (1458)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 655443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=359.83 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=173.8
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH----H
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----L 1281 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~----L 1281 (1458)
|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcceEEEccCCCCccc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999987 999998642 111 13456777777777554332 2347999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKV 1420 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~i 1420 (1458)
+|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998654 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=374.75 Aligned_cols=225 Identities=25% Similarity=0.405 Sum_probs=190.2
Q ss_pred cEEEEeeeEEeCCC--------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH
Q 000505 1207 KIELENLLVQYNPT--------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1278 (1458)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEccCCC--Cccc-cHHHhcC-cC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1279 Q---DLRSRLSIIPQDPM--LFQG-TVRTNLD-PL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1279 ~---~LR~~i~iIpQdp~--LF~g-TIR~NLd-p~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
. .+|+++++|||||. ++.. |+.+|+. +. .... .+++.++|+++++.+ ..+|... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence 3 56889999999994 5553 8888874 21 1122 245678888888853 2334433 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv 1421 (1458)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987643 7899999999999975 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHH
Q 000505 1422 EYDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1422 E~g~p~~Ll~~~~s~F~~l~ 1441 (1458)
|.|+++++++++...|.+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999987766665543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=380.28 Aligned_cols=218 Identities=22% Similarity=0.405 Sum_probs=191.1
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCC--cEEEEcCeeCCCCCHHHHh
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG--GRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~--G~I~IDG~dI~~i~l~~LR 1282 (1458)
.|.|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999964 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cceEEEccCCCCccc-cHHHhcCc-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1283 SRLSIIPQDPMLFQG-TVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp-~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
+++++++|++.+|.. |+++|+.. . ...+ ++++.++++.++|.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999977 99999963 2 1223 234677888888876654444 369999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS---RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~---~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987543 6899999999999865 9999999999999999999999
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876655
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=364.95 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=188.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC---CC-----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|+.++|+||+|.+|++|+++|+.... .. .++++.++++.+++++.. +..++. ...+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~----~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDR----NAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhcc----ChhhCCHHHHH
Confidence 6788999999999999999999997421 11 123566777777774321 122333 34579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
.++.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 6554334
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=382.14 Aligned_cols=216 Identities=23% Similarity=0.345 Sum_probs=188.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEccCCCCccc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999996421 122 245778888888866544333 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|+++|++|+|||||++||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998865 999999999999999999999987765
Q ss_pred hH
Q 000505 1436 SF 1437 (1458)
Q Consensus 1436 ~F 1437 (1458)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 55
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.63 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=190.2
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1278 (1458)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 35999999999953 469999999999999999999999999999999999997 579999999999864 346
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
..+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999642 111 23456778888888655432 22344567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999999
Q ss_pred hhcCC
Q 000505 1430 LEDNS 1434 (1458)
Q Consensus 1430 l~~~~ 1434 (1458)
.+.+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 86543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=357.37 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=181.1
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCCCccc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ++ ..||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-------LV----KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-------Ch----hhCCHHHHHHHHHHHHH
Confidence 9999998876 999999531 111 23457788888888765433 33 36999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
+.+|++|+|||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987643 6899999999999875 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=374.14 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=185.8
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++|++++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEccCCCCcc-ccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|+||+|.+|. .|+++|+..+. ..++ +++.++++.+++.+ ..+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 59999997432 1232 23556677776643 3455553 69999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+++|++|+|||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+|+++.++
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999864 47899999999999976 999999999999999999999765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=379.29 Aligned_cols=217 Identities=23% Similarity=0.420 Sum_probs=192.0
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCCCccc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|++|++.+|.. ||++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999632 1 222 235678888889887766555 369999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||+|++|++|++++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988653 7899999999998765 99999999999999999999998876
Q ss_pred ChH
Q 000505 1435 SSF 1437 (1458)
Q Consensus 1435 s~F 1437 (1458)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 555
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=382.28 Aligned_cols=213 Identities=27% Similarity=0.448 Sum_probs=190.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-ccccHHHhcCcCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1287 IIPQDPML-FQGTVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1287 iIpQdp~L-F~gTIR~NLdp~~-----------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
++||++.+ |+.|+++|+.... ...++.+.++++.+++.++.. ..+ ..||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-------~~~----~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-------RPV----TSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHHHHH
Confidence 99999987 5779999996321 112346888999999876543 333 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||||+++|+||+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+. .||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999864 4789999999999995 4999999999999999999999853
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.05 Aligned_cols=215 Identities=23% Similarity=0.412 Sum_probs=189.2
Q ss_pred cEEEEeeeEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCccccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+| .++..|+.+|+... ...+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 46788999999632 123333 356778888887654332 246999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987643 7899999999999988999999999999999999998864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=354.43 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=173.1
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999998864 4577899999
Q ss_pred ccCC--CCccccHHHhcCcCC---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1289 PQDP--MLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1289 pQdp--~LF~gTIR~NLdp~~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
||+| .+|..|+++|+.... ...++++.++++.+++.++..+.| ..||+|||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997432 123457889999999876644333 369999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv 1421 (1458)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 357899999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.20 Aligned_cols=213 Identities=25% Similarity=0.427 Sum_probs=187.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 349999999999999999999999999999999999999999999999999988777889999999
Q ss_pred EccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1288 IPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1288 IpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
+||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+...+.| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 477889999996311 223 235778888888876554433 3699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987643 789999999999985 5999999999999999999999853
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.92 Aligned_cols=224 Identities=25% Similarity=0.442 Sum_probs=190.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999632 111 23346777888887654322 123345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987677999999999998765 9999999999999999999998
Q ss_pred hcCCChHHH
Q 000505 1431 EDNSSSFSK 1439 (1458)
Q Consensus 1431 ~~~~s~F~~ 1439 (1458)
+++...|..
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 755444443
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=371.59 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=183.0
Q ss_pred cEEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--------
Q 000505 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-------- 1275 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~-------- 1275 (1458)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996532 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcceEEEccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcH-HHHHh
Q 000505 1276 ----------------IGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLA-EIVRQ 1329 (1458)
Q Consensus 1276 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~-~~i~~ 1329 (1458)
.+...+|++++|+||+| .+|..|+++|+.... ..+ ++++.++++.++|. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13457889999999986 688889999996421 223 23467778888774 3322
Q ss_pred cccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-
Q 000505 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI- 1407 (1458)
Q Consensus 1330 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~- 1407 (1458)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2235799999999999999999999999999999999999999999998753 4789999999999875
Q ss_pred hcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1408 DNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1408 ~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
.||||++|++|++++.|+|+++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 4999999999999999999998864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.12 Aligned_cols=217 Identities=23% Similarity=0.411 Sum_probs=186.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC----------
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---------- 1277 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---------- 1277 (1458)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHhcceEEEccCCCCcc-ccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1278 ---LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1278 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999999885 6999999631 111 234567788888876654333 3569
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
|+|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999865 99999999999999
Q ss_pred ecChhHHhhcCCChH
Q 000505 1423 YDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~F 1437 (1458)
.|+++++.+++...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999986654333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.97 Aligned_cols=213 Identities=27% Similarity=0.431 Sum_probs=185.7
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-HHHHhcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~~i~ 1286 (1458)
++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 45999999999999999999999999999999999999999999999999998765 467889999
Q ss_pred EEccCCC--CccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|+||+|. ++..|+++|+.... ..+ ++++.++++..++.+..... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999996431 122 34567778888886654332 2469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+++|+||+|||||++||+.+...+.+.|++.. +++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998754 47899999999999988999999999999999999998754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.84 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=188.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HHhc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~ 1283 (1458)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ceEEEccCCCCccc-cHHHhcCcC----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPL----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
+++|+||++.+|.+ |+++|+... ...+. +.+.+.++.+++.+.. +..+ .+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-------KLMP----SELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-------hCCh----hhCCHHHHHHHH
Confidence 89999999999987 999999631 11222 3456677777775433 2222 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988643 6899999999999876 99999999999999999999987
Q ss_pred cCCChHHHHHH
Q 000505 1432 DNSSSFSKLVA 1442 (1458)
Q Consensus 1432 ~~~s~F~~l~~ 1442 (1458)
+++.....++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 55444444443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=355.73 Aligned_cols=202 Identities=30% Similarity=0.438 Sum_probs=178.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++++|+||++++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 35999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EccCCCCccc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.. |+.+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1122 34577888888887553 3333 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999865 9999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=371.00 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=183.5
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----CCHHH
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1280 (1458)
|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcceEEEccCC--CCccccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.|++++|+||+| .+|+.|+++|+... ...+.+ .+.++++.++|.+.+ .+. ....||+||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~----~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LAR----SPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhC----CcccCCHHHHH
Confidence 888999999998 68888999999632 112332 456677777775221 122 23579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999864 99999999999999999999
Q ss_pred Hhhc
Q 000505 1429 LLED 1432 (1458)
Q Consensus 1429 Ll~~ 1432 (1458)
+.++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=363.63 Aligned_cols=219 Identities=25% Similarity=0.409 Sum_probs=186.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 359999999999999999999999999999999999953 6 499999999998653 345
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|+.++|+||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 111 23456677888887554322 123344579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998865 9999999999999999999998
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.89 Aligned_cols=202 Identities=23% Similarity=0.380 Sum_probs=178.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++... .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+||++.+|. .|+++|+... ...+++++.++++..++.+...+. ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998884 6999999642 123567788899999987765432 2469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
++|+|||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998754 47899999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=363.42 Aligned_cols=221 Identities=21% Similarity=0.388 Sum_probs=187.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 359999999999999999999999999999999999997 3 58999999999864 4456
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|.+|+++|+.... ..++ +++.++++..++.+.+.. .++ ....+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l~----~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD---RLH----TQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---hhh----CCcccCCHHHHH
Confidence 7889999999999999999999995321 1122 235566777777554321 123 344579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987677899999999999865 9999999999999999999998
Q ss_pred hcCCCh
Q 000505 1431 EDNSSS 1436 (1458)
Q Consensus 1431 ~~~~s~ 1436 (1458)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 665443
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.50 Aligned_cols=223 Identities=24% Similarity=0.424 Sum_probs=192.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 359999999999999999999999999999999999875 389999999999875 3466
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC-C--CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL-E--QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~-~--~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
++|++++|+||+|.+|.+|+++|+... . .. + ++++.++++.+++.+.+.. .+|. .+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~----~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD---KLDK----SALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH---HHhC----CcccCCHHHHH
Confidence 789999999999999999999999732 1 11 2 2346778888898776543 2333 34679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987778999999999999876 8999999999999999999998
Q ss_pred hcCCChHH
Q 000505 1431 EDNSSSFS 1438 (1458)
Q Consensus 1431 ~~~~s~F~ 1438 (1458)
..+.+.+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14266 234 INPKDKRT 241 (250)
T ss_pred hCCCChHH
Confidence 77665553
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=361.86 Aligned_cols=224 Identities=24% Similarity=0.430 Sum_probs=190.4
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCCC--C
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--G 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~ 1277 (1458)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999974 359999999999999999999999999999999999986 4 689999999999753 3
Q ss_pred HHHHhcceEEEccCCCCcc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1278 LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
...+|++++|+||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+... ++ ....+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~----~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR---LK----SNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hh----CCcCcCCHH
Confidence 4578899999999999998 5999999631 1112 24467778888876544321 22 345679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~ 1427 (1458)
||||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHhhcCCChH
Q 000505 1428 QLLEDNSSSF 1437 (1458)
Q Consensus 1428 ~Ll~~~~s~F 1437 (1458)
++..++...+
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9987654433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=361.82 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=184.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH-hcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.+++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999988776654 56799
Q ss_pred EEccCCCCccc-cHHHhcCcCCC------------C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLEQ------------H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~------------~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
|+||+|.+|.+ |+++|+..... . .++++.++++..++.+.. + .....||+|||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-------D----RLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-------c----CChhhCCHHHH
Confidence 99999999987 99999964211 0 233466677776664332 2 33357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999975 999999999999999999998
Q ss_pred hh
Q 000505 1430 LE 1431 (1458)
Q Consensus 1430 l~ 1431 (1458)
.+
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 74
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.20 Aligned_cols=224 Identities=25% Similarity=0.372 Sum_probs=185.6
Q ss_pred EEEEeeeEEeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH
Q 000505 1208 IELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~ 1280 (1458)
|+++||+++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcceEEEccCCC--Cc-cccHHHhcCc-C---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1281 ---LRSRLSIIPQDPM--LF-QGTVRTNLDP-L---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1281 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp-~---~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
+|++++|+||+|. ++ ..|+++|+.. . .. ..++++.++++..++.+.. +| ....+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~----~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------AD----KLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hh----CChhhCC
Confidence 6788999999983 44 3699999842 1 11 1234566777777764211 22 2345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
||||||++|||||+++|+||+|||||++||+++...+.+.|++..+ +.|||+|+|+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 000505 1424 DSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1424 g~p~~Ll~~~~s~F~~l~ 1441 (1458)
|+++++++.++....++.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999864333333343
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=361.59 Aligned_cols=222 Identities=26% Similarity=0.413 Sum_probs=188.9
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1278 (1458)
|.|+++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3599999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcCC---CC-----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
..+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .++ ....+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD---RLK----KSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH---HHh----cCCCCCCHHHH
Confidence 67899999999999999999999996321 11 23456677777777544321 123 33457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998865 999999999999999999999
Q ss_pred hhcCCCh
Q 000505 1430 LEDNSSS 1436 (1458)
Q Consensus 1430 l~~~~s~ 1436 (1458)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8654433
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=360.77 Aligned_cols=219 Identities=26% Similarity=0.425 Sum_probs=188.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999964 45999999999999999999999999999999999999987 69999999998653 456
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC---C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|..|+++|+.... . .. ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7899999999999999999999996421 1 11 2345566777777654432 233455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 7999999999999999999997
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6544
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=323.83 Aligned_cols=210 Identities=28% Similarity=0.427 Sum_probs=185.7
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|.+++|.++|.. .| =..+++|++||+|||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 33 357899999999999999999999999999999999999999999999876654 467999
Q ss_pred EccCCCCccc-cHHHhcCcC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~----~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+.||.-||.. ||++|+... - ....+.+..++.++|+.++..++|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999987 999998642 2 2334568999999999999999985 5899999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++++|||++.|+.+++++.++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999888877644 56899999999999865 99999999999999999999997654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=363.48 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=189.2
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1278 (1458)
+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
..+|.+++|+||+|.+|..|+++|+... .... ++.+.++++.+++.+.+.. .++. ....||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~----~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD---KLNK----SALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh---HhcC----CcccCCHHHH
Confidence 6788999999999999999999999632 1112 2345678888888655432 2333 3457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe-----CCEEEEec
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-----EGKVLEYD 1424 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~-----~G~ivE~g 1424 (1458)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987677899999999999876 99999998 59999999
Q ss_pred ChhHHhhcCCC
Q 000505 1425 SPRQLLEDNSS 1435 (1458)
Q Consensus 1425 ~p~~Ll~~~~s 1435 (1458)
+++++++++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999866543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=367.17 Aligned_cols=215 Identities=25% Similarity=0.419 Sum_probs=188.6
Q ss_pred cEEEEeeeEEeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-HHHH
Q 000505 1207 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDL 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~L 1281 (1458)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4568
Q ss_pred hcceEEEccCCC--CccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1282 RSRLSIIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
|++++|+||+|. +|..|+++|+.... ..+ ++++.++++.+++.++..+.| ..||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67678999996421 122 356788899999877655443 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 378999999999999889999999999999999999997
Q ss_pred hc
Q 000505 1431 ED 1432 (1458)
Q Consensus 1431 ~~ 1432 (1458)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.58 Aligned_cols=215 Identities=24% Similarity=0.418 Sum_probs=187.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754446999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCC--CccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
|+||+|. ++..|+++|+.... ... ++++.++++..++.+... . ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-------Y----EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-------C----CcccCCHHHHHHHHHHH
Confidence 9999994 44558999985321 112 345667778777755432 2 23579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998643 6899999999999988999999999999999999998764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=355.30 Aligned_cols=203 Identities=27% Similarity=0.424 Sum_probs=174.3
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---Hh
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1282 (1458)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 35999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cceEEEccCCCCcc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1283 -SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1283 -~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
++++|+||+|.+|. .|+++|+... .... ++++.++++..++.+..... ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999986 5999999641 1222 23466777777775543322 246999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEE
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1421 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~iv 1421 (1458)
+||||++++|+||+|||||++||+++...+.+.|++.. .++|||+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 368999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=362.81 Aligned_cols=221 Identities=25% Similarity=0.354 Sum_probs=195.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.|+++|++++|+.. ..+.|++ ||+|++||+++|+|+||||||||+++|.|+++ .+|++ .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48899999999743 2468999 99999999999999999999999999999998 78986 7776
Q ss_pred ----EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
.++|+||+|+++++|++||+....++..++..++++.++|...+..+|++.++.+++.|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999964444667778889999999988999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHHH
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 815 (1458)
+.+|+|+||||||++||+.+.+.+.+ .+.....++|+|+|||+++++..||+|++|++|++++.|+++++.+ ....+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 99999999999999999998776654 5555556899999999999988899999999999999999999988 555666
Q ss_pred HHHHH
Q 000505 816 RQMKA 820 (1458)
Q Consensus 816 ~~~~~ 820 (1458)
+++..
T Consensus 232 ~~~~~ 236 (275)
T cd03289 232 QAISP 236 (275)
T ss_pred HHHhh
Confidence 66543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=353.90 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=187.1
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH----HHHhcc
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSR 1284 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~ 1284 (1458)
.+.|+.++|+++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 577999999765 469999999999999999999999999999999999999999999999998876542 345778
Q ss_pred eEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
++|+||+|.+|+.|+++|+.....+.+++..++++.+++.+.+..+|.|+++.......+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998654456777788999999999998899999998888889999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000505 1365 ILVLDEATASIDTATDNVIQQ--TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~--~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~ 1419 (1458)
+|+|||||++||..+...+.+ .++... .+.|+|++||+.+.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999888776 444432 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=360.09 Aligned_cols=213 Identities=24% Similarity=0.345 Sum_probs=181.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC------CCCHHHH
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS------MIGLQDL 1281 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~------~i~l~~L 1281 (1458)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcceEEEccCCCCccc-cHHHhcCc--C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLDP--L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp--~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
|++++|+||+|.+|.+ |+++|+.. . .... .+++.+.++..++.++.... ..+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHH
Confidence 8899999999999976 99999952 1 1122 23456667777765544332 24799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
++||||++++|+||+|||||++||+++...+.+.|++.. +++|+|+++|+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998764 37899999999999865 9999999999999999999876
Q ss_pred hcC
Q 000505 1431 EDN 1433 (1458)
Q Consensus 1431 ~~~ 1433 (1458)
+.+
T Consensus 230 ~~~ 232 (242)
T PRK11124 230 QPQ 232 (242)
T ss_pred Ccc
Confidence 433
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=364.00 Aligned_cols=219 Identities=26% Similarity=0.448 Sum_probs=186.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 459999999999999999999999999999999999865 789999999999865 3445
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC----CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++.+++.+.+.. -++ ....+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD---RLH----SSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH---HHh----cCcccCCHHHHH
Confidence 678899999999999999999998632 11 113446777777777532211 122 334679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998865 9999999999999999999998
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
.++.
T Consensus 252 ~~~~ 255 (268)
T PRK14248 252 TSPK 255 (268)
T ss_pred hCCC
Confidence 6544
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.48 Aligned_cols=213 Identities=25% Similarity=0.401 Sum_probs=183.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--HHHHhcce
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1285 (1458)
++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 45999999999999999999999999999999999999999999999999998643 45678899
Q ss_pred EEEccCCCCcc-ccHHHhcCcCC----CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPLE----QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~----~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||++.+|. .|+++|+.... ..+ ++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998886 59999996321 112 2345667777766544332 2357999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
||++++|++|+|||||++||.++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++.++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47899999999999865 9999999999999999999987654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=368.79 Aligned_cols=218 Identities=23% Similarity=0.393 Sum_probs=196.0
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.|+..|++|+|.+||.||..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 35699999999999999999999999999999999999999999999999999998877 5789
Q ss_pred EEEccCCCCccc-cHHHhcCcC-C---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL-E---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++|+|+..||+. ||++|+.+. . ...+ +.+.++|+.++|.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999987 999998642 2 1233 367899999999998877763 5899999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
|||..+|++|+||||-|+||..-...+|.-+++.. .+.|.|.|||+-+... -+|||.||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999998887643 3789999999988765 59999999999999999999999999
Q ss_pred CChHH
Q 000505 1434 SSSFS 1438 (1458)
Q Consensus 1434 ~s~F~ 1438 (1458)
.+.|-
T Consensus 229 ~~~fV 233 (352)
T COG3842 229 ATRFV 233 (352)
T ss_pred chHHH
Confidence 88773
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=358.96 Aligned_cols=211 Identities=27% Similarity=0.480 Sum_probs=180.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-HhcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~ 1286 (1458)
|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998877665 457899
Q ss_pred EEccCCCCccc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||+|.+|.+ |+++|+... .... ++++.+.++..++.+.. .....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1122 22345566666554332 23345799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++++|++|+|||||++||.++.+.+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 47899999999987765 99999999999999999998864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=355.01 Aligned_cols=200 Identities=31% Similarity=0.463 Sum_probs=173.1
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCC--CCccccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1289 PQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1289 pQdp--~LF~gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
||+| .++..|+++|+... ...+ ++++.+.++..++.+...+. ...||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 23456677777776544322 257999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ 1419 (1458)
+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 37899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=346.55 Aligned_cols=186 Identities=32% Similarity=0.422 Sum_probs=157.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------E
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------~ 660 (1458)
.+++++++.+|.. ...|+| ||+|++||+++|+||+||||||||++|+|+.+|++|++ .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4788899888864 478999 99999999999999999999999999999999999997 7877 4
Q ss_pred EEEEcCCCCCCC-CcHHHHHhcCCCCC-------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHH
Q 000505 661 KAYVPQSSWIQT-GTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 661 ~ayv~Q~~~i~~-~Ti~enI~fg~~~~-------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1458)
++||+|++-++. .||+|||.||.+.. +++-++.++..+|...- +....+|||||||||+||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHH
Confidence 699999988765 59999999997652 23445555555554332 345679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CcEEEEEecccchhc-cCCEEEEEeCC
Q 000505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1458)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~D~i~~l~~G 795 (1458)
||+..+|+++||||||+|||+.|+.++-+.+.+-+.+ ++||++||||+++.- -+|||++|.++
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999998887776655543 799999999999865 49999999983
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=364.80 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=187.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCccc-cHHHhcCcCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~-----------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+..... + .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-------V----DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-------c----ccCCHHHHHHHH
Confidence 99999877665 9999996321 11244678889999887654333 2 369999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
||||++.+|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998764 37899999999999865 99999999999999999999874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=364.54 Aligned_cols=220 Identities=24% Similarity=0.440 Sum_probs=188.6
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1278 (1458)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35899999999964 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcC---CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
..+|++++|+||+|.+|.+|+++|+... .. ..+++++++++..++.+.+.. .++ ....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~----~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD---QLD----SSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH---HHh----CCcccCCHHHHHH
Confidence 6788999999999999999999999632 11 124567888888887544322 123 3345799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEE-EEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVL-VLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVl-vL~~G~ivE~g~p~~Ll 1430 (1458)
++|||||+++|+||||||||++||..+.+.+.+.|++..+++|||+++|+++.+.. |||++ +|++|++++.|++++++
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988767899999999999876 99975 57999999999999998
Q ss_pred hcCC
Q 000505 1431 EDNS 1434 (1458)
Q Consensus 1431 ~~~~ 1434 (1458)
+++.
T Consensus 269 ~~~~ 272 (285)
T PRK14254 269 ENPE 272 (285)
T ss_pred hCcC
Confidence 6544
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=363.53 Aligned_cols=221 Identities=25% Similarity=0.408 Sum_probs=190.5
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CC
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IG 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1277 (1458)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 456999999999964 3599999999999999999999999999999999999884 89999999999875 34
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999632 11 11 2447778888887654432 2234456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|||++||||++++|+||+|||||++||+.+...+.+.|++..++.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987677899999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000505 1429 LLEDNS 1434 (1458)
Q Consensus 1429 Ll~~~~ 1434 (1458)
+.+++.
T Consensus 254 ~~~~~~ 259 (272)
T PRK14236 254 LFTSPA 259 (272)
T ss_pred HhcCCC
Confidence 986543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=362.03 Aligned_cols=222 Identities=23% Similarity=0.383 Sum_probs=187.4
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CC
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1277 (1458)
...++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999964 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcC---CCCCH-----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHSD-----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~sd-----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
...+|++++|+||+|.+|..|+++|+... .+.++ +.+.++++..++.+.+. ......+.+||+||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 56788999999999999999999999631 12222 23455566655433221 22234456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++.+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987778999999999999865 99999999999999999999
Q ss_pred HhhcCCC
Q 000505 1429 LLEDNSS 1435 (1458)
Q Consensus 1429 Ll~~~~s 1435 (1458)
+.+++..
T Consensus 253 ~~~~~~~ 259 (271)
T PRK14238 253 IFSNPSD 259 (271)
T ss_pred HHcCCCC
Confidence 9866543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=354.73 Aligned_cols=201 Identities=26% Similarity=0.368 Sum_probs=174.5
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH---HHHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1458)
|+++|++++|+.+ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 5789999999643 459999999999999999999999999999999999999999999999999987754 357889
Q ss_pred eEEEccCCCCccc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++++||+|.+|.+ |+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999632 112 2345778888888866543332 36999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
||++++|+||+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 47899999999999976 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=359.97 Aligned_cols=215 Identities=26% Similarity=0.426 Sum_probs=183.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--------H
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--------L 1278 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--------l 1278 (1458)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEccCCCCcc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1279 QDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
..+|++++|+||+|.+|. .|+++|+... .... ++.+.++++..++.+. ......+||+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 467889999999999886 5999999631 1222 2335566666665432 223346799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~ 1427 (1458)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998764 37899999999999866 9999999999999999999
Q ss_pred HHhhcCC
Q 000505 1428 QLLEDNS 1434 (1458)
Q Consensus 1428 ~Ll~~~~ 1434 (1458)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9876543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=354.35 Aligned_cols=202 Identities=22% Similarity=0.398 Sum_probs=174.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. |++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999765543 568999
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||++.+|. .|+++|+... .... ++++.++++..++.+.....| ..||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 5999999642 1122 234667788888866543332 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=371.18 Aligned_cols=227 Identities=20% Similarity=0.350 Sum_probs=187.4
Q ss_pred cEEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC----CCCcEEEEcCeeCCCCCHHH
Q 000505 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1280 (1458)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996532 359999999999999999999999999999999999997 48999999999999988776
Q ss_pred Hhc----ceEEEccCCC--Cccc-cHHHhc----CcCCCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1281 LRS----RLSIIPQDPM--LFQG-TVRTNL----DPLEQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1281 LR~----~i~iIpQdp~--LF~g-TIR~NL----dp~~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
+|+ ++++|||+|. ++.. |+.+|+ ...... ..+++.++|++++|.+.... ++ .....|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~----~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LD----VYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hh----CCchhC
Confidence 553 6999999995 4432 555544 322111 23457788888888642211 22 334579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEE
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE 1422 (1458)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 3789999999999985 599999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 000505 1423 YDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~F~~l~ 1441 (1458)
.|+++++++++...|.+..
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999987766665443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=362.12 Aligned_cols=211 Identities=27% Similarity=0.453 Sum_probs=186.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccCCCCccc-cHHHhcCcC--------CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL--------EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~--------~~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
+||++.+|.+ |+++|++.. +. ..++++.++++.+++.+... +. ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-------RR----LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-------CC----cccCCHHHHHHHHH
Confidence 9999998877 999999742 11 12345777888888865433 22 34699999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||++++|++|||||||++||+++...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999865 99999999999999999999874
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=362.55 Aligned_cols=223 Identities=22% Similarity=0.375 Sum_probs=191.9
Q ss_pred CCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC---
Q 000505 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS--- 1274 (1458)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~--- 1274 (1458)
|..+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999974 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCCHHHHhcceEEEccCCCCccccHHHhcCcCC--------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1275 -MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1275 -~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
......+|++++|+||+|.+|.+|+++|+.... ...++++.++++.+++.+.+.. .......+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKD-------RLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhH-------HHhCCcccC
Confidence 234567899999999999999999999996321 1224567888888887643322 223345679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
|+|||||++|||||+++|++|+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999965 9999999999999999
Q ss_pred ChhHHhhcCC
Q 000505 1425 SPRQLLEDNS 1434 (1458)
Q Consensus 1425 ~p~~Ll~~~~ 1434 (1458)
+++++..++.
T Consensus 243 ~~~~~~~~~~ 252 (265)
T PRK14252 243 ATDTIFIKPK 252 (265)
T ss_pred CHHHHHhCCC
Confidence 9999976543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=355.45 Aligned_cols=203 Identities=25% Similarity=0.326 Sum_probs=175.6
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCcc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|+||+|.+|. .|+++|+... ... .++++.+++++.++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 6999998632 111 2356778888888876554433 469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEe--CCEEEEecCh
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKVLEYDSP 1426 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~--~G~ivE~g~p 1426 (1458)
||+++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998765 99999999 7999998763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=354.72 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=174.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HHhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1284 (1458)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4699999999999999999999999999999999999999999999999999887643 46889
Q ss_pred eEEEccCCCCcc-ccHHHhcCcC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++|+||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999998642 1 112456788899988876544333 36999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ 1419 (1458)
|||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47899999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=360.95 Aligned_cols=220 Identities=21% Similarity=0.408 Sum_probs=188.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 359999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
.+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7889999999999999899999996421 11 234566678888887655321 2334567999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe---------CCEEEEe
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKVLEY 1423 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~---------~G~ivE~ 1423 (1458)
+|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987767899999999999865 89999998 8999999
Q ss_pred cChhHHhhcCCC
Q 000505 1424 DSPRQLLEDNSS 1435 (1458)
Q Consensus 1424 g~p~~Ll~~~~s 1435 (1458)
|+++++.+++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=358.86 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=187.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 4599999999999999999999999999999999999875 799999999999653 345
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC---CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... ++ .....||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~----~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD---LK----KSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH---hh----CCcccCCHHHHH
Confidence 6789999999999999999999996321 11 1 23466788888875443221 22 344579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|+||+|||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999866 9999999999999999999998
Q ss_pred hcC
Q 000505 1431 EDN 1433 (1458)
Q Consensus 1431 ~~~ 1433 (1458)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=377.69 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=178.7
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH----hcceEEEccCCCCccc-
Q 000505 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG- 1297 (1458)
Q Consensus 1223 ~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1297 (1458)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998876654 4689999999999975
Q ss_pred cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000505 1298 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1458)
Q Consensus 1298 TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1370 (1458)
|+++|+... ...+ ++++.++++.++|.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999632 1122 345778888988876654443 3699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000505 1371 ATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F 1437 (1458)
||++||+.+...+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998764 47899999999999865 99999999999999999999987665444
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=357.30 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=185.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987654 3688999
Q ss_pred EccCCCCccc-cHHHhcCcC-C------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~-~------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+... . ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999631 1 112456778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
+++|++|+|||||+++|..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|++.++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999987643 7899999999999865 8999999999999999999988654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=356.33 Aligned_cols=212 Identities=24% Similarity=0.350 Sum_probs=179.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-Hhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 45999999999999999999999999999999999999999999999999998887655 67889
Q ss_pred EEEccCCCCccc-cHHHhcCcCCC-CCHH----HHHHHHHHc-CcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-HSDQ----EIWEVINKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~sde----eI~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
+|+||++.+|.+ |+++|+..... .+.+ ++.++++.. ++.+ ..+. ....||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~----~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRIQ----RAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHhC----chhhCCHHHHHHHHHHHH
Confidence 999999999986 99999964211 1222 233333333 1221 1222 345799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++++|+||+|||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998754 47999999999997755 99999999999999999999974
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=367.23 Aligned_cols=217 Identities=28% Similarity=0.406 Sum_probs=181.8
Q ss_pred CccEEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----C-
Q 000505 1205 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----I- 1276 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i- 1276 (1458)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999996532 259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHhcceEEEccCC--CCccccHHHhcCcCC---CCCHHH----HHHHHHHcCcH-HHHHhcccccCccccCCCCCCC
Q 000505 1277 GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1277 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sdee----I~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
+...+|++++|+||+| .+|..|+++|+.... ....++ +.+.++..++. +. ++ .....||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~----~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-------VK----RSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-------hc----CChhhCC
Confidence 3567889999999998 477889999996321 123322 34455555542 21 22 3345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998764 37899999999998754 999999999999999
Q ss_pred cChhHHhhc
Q 000505 1424 DSPRQLLED 1432 (1458)
Q Consensus 1424 g~p~~Ll~~ 1432 (1458)
|++++++++
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999988753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=375.75 Aligned_cols=218 Identities=25% Similarity=0.434 Sum_probs=189.5
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++...+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 359999999999999999999999999999999999999999999999999987664 47789
Q ss_pred EEEccCCCCccc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|++|++.+|.. |+++|+... . ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999986 999999732 1 222 245677888888866544433 369999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988777653 36899999999998765 99999999999999999999998877
Q ss_pred ChHH
Q 000505 1435 SSFS 1438 (1458)
Q Consensus 1435 s~F~ 1438 (1458)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 6653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=339.61 Aligned_cols=172 Identities=36% Similarity=0.614 Sum_probs=162.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000505 1368 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~i 1420 (1458)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=354.63 Aligned_cols=211 Identities=27% Similarity=0.430 Sum_probs=177.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-HhcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~ 1286 (1458)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEccCCCCccc-cHHHhcCcC-CC--CCHHH-HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL-EQ--HSDQE-IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~~--~sdee-I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
|+||++.+|.+ |+++|+... .. ..+++ ..++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999632 11 12222 233333332 12222233345799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 7899999999999986 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=358.85 Aligned_cols=223 Identities=24% Similarity=0.394 Sum_probs=189.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+.|++++|+||+|.+|.+|+++|+.... . . .++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-------RLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-------HhhcChhhCCHHHHH
Confidence 7889999999999999999999997421 1 1 13346677777776543321 233445679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++.+|++++|||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999965 9999999999999999999998
Q ss_pred hcCCChHH
Q 000505 1431 EDNSSSFS 1438 (1458)
Q Consensus 1431 ~~~~s~F~ 1438 (1458)
+++...+.
T Consensus 237 ~~~~~~~~ 244 (253)
T PRK14261 237 ENPHEELT 244 (253)
T ss_pred hCCCcHHH
Confidence 65543333
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=366.19 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=182.1
Q ss_pred EEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----CHHH
Q 000505 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1280 (1458)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEccCC--CCccccHHHhcCcC---CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+|++++|+||+| .+|+.|+++|+... ...++++ +.++++..++.+.. ++ .....|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------FE----KNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hh----CCcccCCHHHHH
Confidence 889999999998 68889999999632 1223332 34556666664211 12 234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 37899999999998865 999999999999999999998
Q ss_pred hhc
Q 000505 1430 LED 1432 (1458)
Q Consensus 1430 l~~ 1432 (1458)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=362.18 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=188.0
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
-.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCCCCcc-ccHHHhcCcCC--------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPLE--------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~--------~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
+|+||++.+|. .|+++|+.... . ..+++++++++..++.+... .. ...||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-------QS----VDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-------CC----cccCChHHHHHH
Confidence 99999998875 59999996421 1 12345788888888876532 22 357999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+||||++++|++|+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998865 9999999999999999999987
Q ss_pred h
Q 000505 1431 E 1431 (1458)
Q Consensus 1431 ~ 1431 (1458)
+
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=356.22 Aligned_cols=204 Identities=27% Similarity=0.363 Sum_probs=178.7
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++ ..+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCce
Confidence 35999999999964 3599999999999999999999999999999999999999999999999876 3568899
Q ss_pred EEEccCCCCcc-ccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+|+||+|.+|. .|+++|+... ....++++.++++..++.+.... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 5999999743 22235678888998888654332 23579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~ 1427 (1458)
++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.++..
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998753 37899999999999865 9999999999999988754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=355.34 Aligned_cols=210 Identities=25% Similarity=0.442 Sum_probs=184.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||++.+|. .|+++|+... ... .++++.++++.+++.+.+.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999631 111 2345678888888877654433 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998643 7999999999999876 9999999999999999999998654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=369.65 Aligned_cols=227 Identities=25% Similarity=0.386 Sum_probs=188.2
Q ss_pred cEEEEeeeEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEEcCeeCCCCCHHHH
Q 000505 1207 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~l~~L 1281 (1458)
.++++|++++|+. +...+++|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 2236999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEccCC--CCcc-ccHHHhcC----cCCCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1282 R----SRLSIIPQDP--MLFQ-GTVRTNLD----PLEQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1282 R----~~i~iIpQdp--~LF~-gTIR~NLd----p~~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
| ++|+|||||| .++. -|+.+|+. .....+. +++.+.|+.+++.+ +.+ .+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------ARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hHH-HhcCCcccCC
Confidence 4 4799999999 4554 37777663 2222232 23556677666532 111 1334556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999874 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 000505 1424 DSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1424 g~p~~Ll~~~~s~F~~l~ 1441 (1458)
|+++++++++...|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999988776666543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=364.87 Aligned_cols=215 Identities=32% Similarity=0.456 Sum_probs=182.5
Q ss_pred cEEEEeeeEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----CHH
Q 000505 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~ 1279 (1458)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 3599999999999999999999999999999999999999999999999998753 245
Q ss_pred HHhcceEEEccCC--CCccccHHHhcCcC---CCCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhH
Q 000505 1280 DLRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
..|+.++|+||+| .+|..|+++|+... ...+. +.+.++++.+++. +.. +.+ ..+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~~----~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-------SKS----PFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-------hCC----cccCCHHH
Confidence 6788999999998 57888999999521 12222 2356667777764 232 222 35799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChh
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPR 1427 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~ 1427 (1458)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. ++.|||++||+++.+. -||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 4689999999999986 49999999999999999999
Q ss_pred HHhhc
Q 000505 1428 QLLED 1432 (1458)
Q Consensus 1428 ~Ll~~ 1432 (1458)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=357.99 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=185.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccCCCC-ccccHHHhcCcCCC---C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPML-FQGTVRTNLDPLEQ---H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~L-F~gTIR~NLdp~~~---~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||++.+ +..|+++|+..... . .++++.++++..++.+... .. ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-------RD----YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-------CC----cccCCHHHHHHHHHHHHH
Confidence 9999987 66799999864211 1 2345778888888865432 22 247999999999999999
Q ss_pred c------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000505 1360 L------KKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1360 L------r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+ ++|++|+|||||++||+.+...+.+.|++.. .+.|||++||+++.+. -||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998764 4789999999999986 49999999999999999999987
Q ss_pred h
Q 000505 1431 E 1431 (1458)
Q Consensus 1431 ~ 1431 (1458)
+
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 5
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=355.51 Aligned_cols=212 Identities=24% Similarity=0.426 Sum_probs=181.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-Hhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999964 35999999999999999999999999999999999999999999999999998877654 57899
Q ss_pred EEEccCCCCccc-cHHHhcCcCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+|.+|.+ |+++|+.... ..+. +.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999885 9999997432 1121 234555555555432 2233457999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
||++++|++|+|||||++||+.+...+.+.+++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988754 47899999999987755 99999999999999999999875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=359.40 Aligned_cols=222 Identities=24% Similarity=0.417 Sum_probs=189.9
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCC--CCH
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGL 1278 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l 1278 (1458)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.+++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcceEEEccCCCCccccHHHhcCcC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
..+|+.++++||++.+|..|+++|+... .. .+ ++++.++++.+++.+++..+ .......||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999632 11 12 23467788888886655422 2334467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeC-----CEEEE
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDE-----GKVLE 1422 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~-----G~ivE 1422 (1458)
||++|||||+++|+||+|||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998742 47999999999999865 899999999 99999
Q ss_pred ecChhHHhhcCCCh
Q 000505 1423 YDSPRQLLEDNSSS 1436 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~ 1436 (1458)
.|+|+++.+++...
T Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
T PRK14258 237 FGLTKKIFNSPHDS 250 (261)
T ss_pred eCCHHHHHhCCCCH
Confidence 99999998765543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=349.10 Aligned_cols=200 Identities=29% Similarity=0.416 Sum_probs=174.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987653 4678999
Q ss_pred EccCCCCccc-cHHHhcCcCCC-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLEQ-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+..... ..++++.++++.+++.+.....| ..||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999973211 13456888999999876654443 36999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37899999999999866 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=352.95 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=178.9
Q ss_pred cEEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---H
Q 000505 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1281 (1458)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25999999999999999999999999999999999999999999999999998877654 3
Q ss_pred -hcceEEEccCCCCccc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1282 -RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 -R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
+++++|+||+|.+|.+ |+++|+... ... ..+++.++++.+++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999885 999998631 111 2345778888888876654433 3699999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEe
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~ 1423 (1458)
++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998763 26899999999999988999999999999874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=353.88 Aligned_cols=210 Identities=26% Similarity=0.424 Sum_probs=183.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999986543 4789999
Q ss_pred EccCCCCccc-cHHHhcCcCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999986 9999996321 11 234567788888876554332 247999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987543 6899999999999866 999999999999999999999853
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=367.28 Aligned_cols=212 Identities=25% Similarity=0.373 Sum_probs=182.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEccCCCCcc-ccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQ-GTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~-gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||+|.+|. .|+++|+..+ ...+.+ ++.++++.+++.+. ++..+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999632 123332 34456666666433 34444 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47899999999999875 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=359.66 Aligned_cols=219 Identities=27% Similarity=0.422 Sum_probs=187.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCC-HHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIG-LQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~-l~~ 1280 (1458)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 3699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcceEEEccCCCCccccHHHhcCcC----CCCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL----EQHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sdeeI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
+|++++|+||+|.+|..|+++|+... ...+++++ .+.++.+++.+... +.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 88999999999999999999999632 12344443 34556666643321 22334556899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999865 99999999999999999999987
Q ss_pred cCC
Q 000505 1432 DNS 1434 (1458)
Q Consensus 1432 ~~~ 1434 (1458)
++.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=358.76 Aligned_cols=219 Identities=23% Similarity=0.422 Sum_probs=185.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhcceEEEccCCCCccc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
.+|+.++++||++.+|.. |+++|+... +..+ ++.+.++++.+++.+.+.. .++ ....+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLD----KPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---Hhh----CCcccCCHHHH
Confidence 788999999999999974 999998631 1111 3456677888887543321 123 33457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe------CCEEEEe
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD------EGKVLEY 1423 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~------~G~ivE~ 1423 (1458)
||++||||++++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|+ +|++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhHHhhcCC
Q 000505 1424 DSPRQLLEDNS 1434 (1458)
Q Consensus 1424 g~p~~Ll~~~~ 1434 (1458)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999986543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=362.39 Aligned_cols=212 Identities=28% Similarity=0.429 Sum_probs=182.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC--CCCHHHHhcce
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~i 1285 (1458)
|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999964 45999999999999999999999999999999999999999999999999985 33456788999
Q ss_pred EEEccCCC--CccccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPM--LFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~--LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+|. +|..|+.+|+... ...++ +++.++++.+++.++. +.. ..+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQP----IQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cCC----chhCCHHHHHHHHHH
Confidence 99999985 5778999998642 11222 3456677888876543 333 347999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999865 999999999999999999998754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=356.01 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=187.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC-CCCHHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS-MIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~-~i~l~~ 1280 (1458)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999964 4599999999999999999999999999999999999986 5999999999986 455678
Q ss_pred HhcceEEEccCCCCccccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. ..++. ....||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~----~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK---DRLKS----HAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh---HHhhc----CcccCCHHHHHH
Confidence 89999999999999999999999632 111 1 234566777777765432 12333 345799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999876
Q ss_pred cCC
Q 000505 1432 DNS 1434 (1458)
Q Consensus 1432 ~~~ 1434 (1458)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=357.47 Aligned_cols=223 Identities=24% Similarity=0.371 Sum_probs=186.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l~ 1279 (1458)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 35999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred HHhcceEEEccCCCCccc-cHHHhcCcC---CC-CCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ-HSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~-~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
.+|++++|+||+|.+|.+ |+++|+... .. ..+++ ..+.++..++.+.+ ++.++.++ .+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~----~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA----TGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc----ccCCHHHH
Confidence 788999999999999985 999999631 11 12333 33334555554332 23345443 57999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
||++||||++++|+||+|||||++||..+...+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999986 999999999999999999999
Q ss_pred hhcCCChHH
Q 000505 1430 LEDNSSSFS 1438 (1458)
Q Consensus 1430 l~~~~s~F~ 1438 (1458)
++++...+.
T Consensus 235 ~~~~~~~~~ 243 (252)
T PRK14272 235 FTNPRDERT 243 (252)
T ss_pred HhCcCcHHH
Confidence 877655453
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.19 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=189.1
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CC
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IG 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1277 (1458)
.-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ..
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 336999999999964 3599999999999999999999999999999999999863 59999999999864 34
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcCC---C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
...+|++++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+.. .++. ....||+||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~----~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLKE----KGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---HhcC----CcccCCHHHHH
Confidence 456789999999999999899999996421 1 124456777888887655432 2333 34579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe---------CCEEE
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKVL 1421 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~---------~G~iv 1421 (1458)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988777999999999999865 99999997 89999
Q ss_pred EecChhHHhhcCC
Q 000505 1422 EYDSPRQLLEDNS 1434 (1458)
Q Consensus 1422 E~g~p~~Ll~~~~ 1434 (1458)
+.|+++++.+++.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999986554
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=351.49 Aligned_cols=197 Identities=29% Similarity=0.451 Sum_probs=169.4
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998764 578899999
Q ss_pred ccCCCC---ccccHHHhcCcCCC-----------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1289 PQDPML---FQGTVRTNLDPLEQ-----------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1289 pQdp~L---F~gTIR~NLdp~~~-----------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
||+|.+ |..|+++|+..... ..++++.++++.+++.+.... .+ .+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-------QI----GELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-------Cc----ccCCHHHHHHHH
Confidence 999976 56899999863211 123467888888888765433 22 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
|||||+++|++|+|||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998864 57899999999999876 8999999986 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=357.05 Aligned_cols=222 Identities=19% Similarity=0.310 Sum_probs=191.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--CHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1458)
.+.+++.+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4789999999964 3599999999999999999999999999999999999986 799999999998643 445
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999974311 1235678889998886655322 2345568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe--------CCEEEEec
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD--------EGKVLEYD 1424 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~--------~G~ivE~g 1424 (1458)
+||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987677899999999999865 99999996 89999999
Q ss_pred ChhHHhhcCCChH
Q 000505 1425 SPRQLLEDNSSSF 1437 (1458)
Q Consensus 1425 ~p~~Ll~~~~s~F 1437 (1458)
+++++++++...+
T Consensus 239 ~~~~~~~~~~~~~ 251 (261)
T PRK14263 239 PTAQIFQNPREQL 251 (261)
T ss_pred CHHHHHhCCCcHH
Confidence 9999987654333
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=361.45 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=183.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--CCHHHHhcce
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1285 (1458)
|+++|++++|+.+ .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 359999999999999999999999999999999999999999999999999853 2345688999
Q ss_pred EEEccCC--CCccccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.++. |..+ ..||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------NKPP----HHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------cCCh----hhCCHHHHHHHHHH
Confidence 9999998 578899999996311 122 23467788888875443 3333 46999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||++++|++|+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 37899999999999875 999999999999999999998753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=357.70 Aligned_cols=212 Identities=22% Similarity=0.383 Sum_probs=181.3
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH-hcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1285 (1458)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 369999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEEccCCCCccc-cHHHhcCcCCC-------------------CC---HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-------------------HS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-------------------~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
+|+||+|.+|.+ |+++|+..... .. .+++.+.++..++.+. .....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999986 99999874210 00 1234445555555432 23344
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ 1419 (1458)
.+||+|||||++||||++++|++|+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 57999999999999999999999999999999999999999999987643 6899999999999866 99999999999
Q ss_pred EEEecChhHHhh
Q 000505 1420 VLEYDSPRQLLE 1431 (1458)
Q Consensus 1420 ivE~g~p~~Ll~ 1431 (1458)
+++.|+++++.+
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999999875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=350.37 Aligned_cols=208 Identities=24% Similarity=0.394 Sum_probs=182.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++||+++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999887644 3678999
Q ss_pred EccCCCCccc-cHHHhcCc-CCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDP-LEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp-~~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.+...| ..||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999963 211 12456888999999987765544 36999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
+++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999988643 7899999999999865 999999999999999999999854
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=359.89 Aligned_cols=226 Identities=26% Similarity=0.368 Sum_probs=188.0
Q ss_pred cEEEEeeeEEeCC-------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH
Q 000505 1207 KIELENLLVQYNP-------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~-------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1279 (1458)
.|+++||+++|+. +..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999765556
Q ss_pred HHhcceEEEccCCC--Cccc-cHHHhcCc----CCC----CCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCCh
Q 000505 1280 DLRSRLSIIPQDPM--LFQG-TVRTNLDP----LEQ----HSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp----~~~----~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
..|++++|+||+|. ++.. |+.+|+.. ... ..++++.++++.+++. +.. +..+ .+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SYYP----HMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hcCc----hhcCH
Confidence 66778999999985 4444 78888742 111 1234678889998884 322 2222 46999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1348 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999986 9999999999999999
Q ss_pred ChhHHhhcCC-ChHHHHHHH
Q 000505 1425 SPRQLLEDNS-SSFSKLVAE 1443 (1458)
Q Consensus 1425 ~p~~Ll~~~~-s~F~~l~~~ 1443 (1458)
+++++.+++. ..+++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 9999987643 334455544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=356.51 Aligned_cols=222 Identities=25% Similarity=0.385 Sum_probs=187.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCC--CCHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1279 (1458)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 469999999999999999999999999999999999975 4 58999999999864 3455
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
.+|++++|+||+|.+|..|+++|+... ... . ++++.++++.+++.+.+. ..++ ....+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---~~~~----~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK---DHLH----ESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh---hHHh----cCcccCCHHHHH
Confidence 678899999999999999999998631 111 1 345666777777654332 1123 334579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655444
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=364.64 Aligned_cols=220 Identities=27% Similarity=0.477 Sum_probs=188.9
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCC--C
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--G 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1277 (1458)
+..|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcC-C-------------------CCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL-E-------------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~-------------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~ 1337 (1458)
...+|++++|+||++.+|.+|+++|+... . +..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 56788999999999999999999999631 0 012345777888887754332 22
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEE-EEE
Q 000505 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLV-LVL 1415 (1458)
Q Consensus 1338 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrV-lvL 1415 (1458)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34455689999999999999999999999999999999999999999999988777899999999999876 9997 578
Q ss_pred eCCEEEEecChhHHhhcC
Q 000505 1416 DEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1416 ~~G~ivE~g~p~~Ll~~~ 1433 (1458)
++|++++.|+++++.+++
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=370.36 Aligned_cols=212 Identities=26% Similarity=0.415 Sum_probs=183.6
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 57889999
Q ss_pred EEccCCCCcc-ccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQ-GTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~-gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||++.+|. .|+++|+..+. ..+. +.+.++++.+++.+ ..+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHHH
Confidence 9999998874 59999996422 1222 23445566666543 345555 3699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|+.+|++|+|||||++||+.+...+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999976 999999999999999999999764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=365.65 Aligned_cols=211 Identities=23% Similarity=0.353 Sum_probs=186.1
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678999999
Q ss_pred EccCCCCccc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++||.... ..+ .+++.++++..++.+.. +.. ..+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-------HKK----IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-------cCc----hhhCCHHHHHHHHHHHHH
Confidence 9999999987 9999996321 122 34566777777776543 222 357999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
+++|++|+|||||++||+.+.+.+++.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999999876 999999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=337.07 Aligned_cols=209 Identities=27% Similarity=0.380 Sum_probs=173.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|+++|+++.|.. ...+++ ||+|++||+++++||+||||||+|+.|.++++|++|++ .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999863 467888 99999999999999999999999999999999999997 8887
Q ss_pred ---EEEEEcCCCCCC-CCcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 660 ---KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~-~~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
++|||-|+.-+| +.||.|||.+=.. +++++ -++.++..+|+.. ........+|||||+||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQR 143 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQR 143 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhH
Confidence 369999997775 6799999997532 44433 3444444555431 12345678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchh-ccCCEEEEEeCCeEEEcccchhh
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l 806 (1458)
|.+||||..+|+|+|+||||+||||-++.++-++...-.. -+||+|+||||+++. +.+|||.+|++|+|++.++++++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999998888665443222 389999999999985 56999999999999999999999
Q ss_pred hhhcchHHHHH
Q 000505 807 IADQNSELVRQ 817 (1458)
Q Consensus 807 ~~~~~~~~~~~ 817 (1458)
+.++..+|.+.
T Consensus 224 l~~Pan~FV~~ 234 (309)
T COG1125 224 LANPANDFVED 234 (309)
T ss_pred HhCccHHHHHH
Confidence 98777776553
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=361.83 Aligned_cols=224 Identities=24% Similarity=0.369 Sum_probs=188.3
Q ss_pred CccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCC--C
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--G 1277 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1277 (1458)
...|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... .
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 345899999999964 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcceEEEccCCCCccccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
...+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+. +.++. ....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK----NALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC----ChhhCCHHH
Confidence 34678999999999999989999999632 111 1 234567777777653322 22333 345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
|||++|||||+++|++|||||||++||+++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCCChH
Q 000505 1429 LLEDNSSSF 1437 (1458)
Q Consensus 1429 Ll~~~~s~F 1437 (1458)
+.+++...+
T Consensus 268 ~~~~~~~~~ 276 (286)
T PRK14275 268 LFTNPKDRM 276 (286)
T ss_pred HHhCCCcHH
Confidence 987655434
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=349.06 Aligned_cols=200 Identities=26% Similarity=0.459 Sum_probs=172.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 359999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EccCCCCccc-cHHHhcCcCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999985321 11 13456667777777554322 2357999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 46899999999999865 9999999999998864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=350.26 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=172.1
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH---HHHh
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR 1282 (1458)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cceEEEccCC--CCc-cccHHHhcCc----CC-CCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1283 SRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1283 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sdeeI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
++++|+||+| .++ ..|+++|+.. .. ...+++. .+.++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 4699999852 11 1112211 24555555521 112233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhh-hcCEEEEEeCCEEEEec
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g 1424 (1458)
||++|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998654 789999999999987 49999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=347.88 Aligned_cols=203 Identities=27% Similarity=0.373 Sum_probs=174.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH---Hhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1284 (1458)
|+++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred eEEEccCCCCc-cccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1285 LSIIPQDPMLF-QGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1285 i~iIpQdp~LF-~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
++|+||+|.+| ..|+++|+... ...+++ ++.++++..++.+...+. ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 56999999642 122322 456777888776544332 247999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
||++++|++|+|||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999763 46899999999999976 89999999999863
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=366.94 Aligned_cols=226 Identities=20% Similarity=0.345 Sum_probs=187.8
Q ss_pred cEEEEeeeEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC----CCCcEEEEcCeeCCCCCHHH
Q 000505 1207 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1280 (1458)
-++++|++++|.. +...+++||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999953 22359999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cceEEEccCCC--Ccc-ccHHHhcCc-C------CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccC
Q 000505 1281 LR----SRLSIIPQDPM--LFQ-GTVRTNLDP-L------EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1458)
Q Consensus 1281 LR----~~i~iIpQdp~--LF~-gTIR~NLdp-~------~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1458)
++ ++|++|||+|. ++. -||.+|+.. . +. ..++++.++|++++|.+.-. -++..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~----~~~~~--- 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD----AMRSF--- 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH----HHhCC---
Confidence 53 47999999996 333 488888741 1 10 11346778899988864211 12222
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 000505 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1417 (1458)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~ 1417 (1458)
...||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 156 -p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 156 -PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred -chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 246999999999999999999999999999999999999999999998653 7899999999999965 999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHH
Q 000505 1418 GKVLEYDSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1418 G~ivE~g~p~~Ll~~~~s~F~~l 1440 (1458)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999998776666553
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=347.18 Aligned_cols=199 Identities=30% Similarity=0.421 Sum_probs=168.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+|+|+. .+.++| ||++++|++++|+|||||||||||++|+|.++|.+|++ .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 4789999999974 589999 99999999999999999999999999999999999997 8888
Q ss_pred ----EEEEEcCCCCC-CCCcHHHHHhcCCCC--------CH---HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 ----KKAYVPQSSWI-QTGTIRENILFGKDM--------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 ----~~ayv~Q~~~i-~~~Ti~enI~fg~~~--------~~---~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.+|||||++.. +..||+|-+.+|+.. .+ +..+++++.+++.+- ..+...+|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccCh
Confidence 57999999765 456999999999632 12 223334555554332 2345668999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchh-ccCCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g 801 (1458)
||||||.|||||+++|+|+|||||||+||....-++++.+.+.. .+|+|+|+|+||++.. .+||++++|++|+++..|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999987544333 3489999999999986 569999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
+++|.+.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9999886
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=356.85 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=184.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCC-CccccHHHhcCcCC----C-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000505 1288 IPQDPM-LFQGTVRTNLDPLE----Q-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1288 IpQdp~-LF~gTIR~NLdp~~----~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1458)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.. |.. ...||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-------DRD----MSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-------cCC----cccCCHHHHHHHHH
Confidence 999985 45679999996421 0 1233577888888886543 233 34699999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1356 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||++.+|++++|||||++||+.+...+.+.|++.. ++.|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 3689999999999995 599999999999999999998864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=345.67 Aligned_cols=201 Identities=23% Similarity=0.395 Sum_probs=176.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. +++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 568999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EccCCCCccc-cHHHhcCc-CC-C-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDP-LE-Q-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp-~~-~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999862 21 1 13456778899999877655444 36999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~ 1425 (1458)
+++|+|++|||||++||.++...+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999864 37899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=348.01 Aligned_cols=200 Identities=29% Similarity=0.464 Sum_probs=172.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--CCHHHHhcce
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1285 (1458)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 3456788999
Q ss_pred EEEccCCCCcc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1458)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999987 5999999642 1222 23456677777776544332 247999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1357 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
||++++|++|+|||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999764 47899999999999965 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=361.49 Aligned_cols=213 Identities=29% Similarity=0.503 Sum_probs=189.3
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 23599999999999999999999999999999999999999999999999998765 678999999
Q ss_pred EEccCCCCccc-cHHHhcCcCC-------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLE-------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~-------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +.++ ..||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHHH
Confidence 99999998877 9999998542 12356788999999987621 3333 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|+.+|++|+|||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||+|++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998765 3 699999999999987 999999999999999999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=343.98 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=174.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|++++++..|... .......++| ||+|++||+.+|+|.+|+|||||+++|.++-.|++|++ .++|
T Consensus 2 I~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 7889999888753 0123467899 99999999999999999999999999999999999997 8888
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCCC----CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~~----~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
+||+++|++-+.+ .||.+||.|..+. .++..++|.+.+.+.. ++ ...+....+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVg----L~----dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG----LS----DKADRYPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcC----Ch----hhhccCchhcCcchhhH
Confidence 3699999998876 7999999998653 3445555555443321 11 12346678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchh
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1458)
|+|||||..+|+|+|.|||||||||++.+.|.+. +...- -|-|+++|||.++.++. ||||.||++|++++.|+..+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L-L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILEL-LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 9999999999999999999999999999999874 43332 38999999999999987 99999999999999999999
Q ss_pred hhhhcchHH
Q 000505 806 LIADQNSEL 814 (1458)
Q Consensus 806 l~~~~~~~~ 814 (1458)
+..++..+.
T Consensus 229 vF~~Pk~~~ 237 (339)
T COG1135 229 VFANPKHAI 237 (339)
T ss_pred hhcCcchHH
Confidence 987554443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=368.69 Aligned_cols=205 Identities=21% Similarity=0.325 Sum_probs=176.5
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCe----eCCCCCHHHH---h-cceEEEccCCC
Q 000505 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV----DISMIGLQDL---R-SRLSIIPQDPM 1293 (1458)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~----dI~~i~l~~L---R-~~i~iIpQdp~ 1293 (1458)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | ++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 6777765554 3 58999999999
Q ss_pred Ccc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000505 1294 LFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1294 LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1458)
+|+ .|+++|+... ...+ .+.+.++++.++|.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999632 1122 235677888888876543332 36999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F 1437 (1458)
|+||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 999999999999999999999988653 7899999999999855 99999999999999999999997665444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=352.82 Aligned_cols=222 Identities=22% Similarity=0.368 Sum_probs=182.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCee-----CCCCCHHH-
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1280 (1458)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcceEEEccCCC--Ccc-ccHHHhcCc----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1281 ---LRSRLSIIPQDPM--LFQ-GTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1281 ---LR~~i~iIpQdp~--LF~-gTIR~NLdp----~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
.|+.++|+||+|. ++. .|+++|+.. +.... .+++.++++..++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 478888741 22111 223445555555431 12334556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
||||||++|||||+++|+||+|||||++||+.+...+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987543 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 000505 1424 DSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1424 g~p~~Ll~~~~s~F~~l 1440 (1458)
|+++++..++...|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQL 250 (258)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655445443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=352.69 Aligned_cols=223 Identities=28% Similarity=0.421 Sum_probs=187.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcC------eeCCCCCHHH
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG------VDISMIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG------~dI~~i~l~~ 1280 (1458)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4599999999999999999999999999999999999999986666554 6777777778
Q ss_pred HhcceEEEccCCCCccc-cHHHhcCcC----CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1281 LRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+|++++|+||+|.+|.+ |+++|+... +...++ .+.++++..++.+.+.. .+ ...+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~----~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD---RL----NSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh---hh----cCCcccCCHHHHH
Confidence 89999999999999986 999999732 111222 34667777777543311 12 2344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
|++||||++++|++|+|||||++||..+...+.+.|++..+++|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999998767799999999999995 59999999999999999999998
Q ss_pred hcCCChHH
Q 000505 1431 EDNSSSFS 1438 (1458)
Q Consensus 1431 ~~~~s~F~ 1438 (1458)
+++...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 76554454
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=352.17 Aligned_cols=223 Identities=23% Similarity=0.332 Sum_probs=184.3
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC----CCcEEEEcCeeCCCCCHHHHh
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR 1282 (1458)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEEccCCC-Ccc--ccHHHhcCc----C-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1283 SRLSIIPQDPM-LFQ--GTVRTNLDP----L-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 ~~i~iIpQdp~-LF~--gTIR~NLdp----~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
+.++|+||+|. .|. .|+.+|+.. . ....+++++++++.+++.+.. +.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 1 123456788889988875421 1223344679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999988643 6899999999999865 99999999999999999999987
Q ss_pred cCCC-hHHHHHH
Q 000505 1432 DNSS-SFSKLVA 1442 (1458)
Q Consensus 1432 ~~~s-~F~~l~~ 1442 (1458)
++.. .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 6544 3444443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.49 Aligned_cols=209 Identities=24% Similarity=0.351 Sum_probs=180.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|+++.|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5899999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCccccHHHhcCcC----CC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1287 IIPQDPMLFQGTVRTNLDPL----EQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~----~~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
|+||+|.+|+.|+++|+... .. ..++++.++++..++.+.. ++ ....+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI------LT----KNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH------hc----CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 1234566777777774311 12 2345799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEe-CCEEEEecChh
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLD-EGKVLEYDSPR 1427 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~~DrVlvL~-~G~ivE~g~p~ 1427 (1458)
+|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..||+|++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999864 3789999999999998899999995 56666777764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=363.65 Aligned_cols=203 Identities=25% Similarity=0.419 Sum_probs=176.7
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCc
Q 000505 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1458)
Q Consensus 1216 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1295 (1458)
+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 359999999999999999999999999999999999999999999999999976 3457789999999999999
Q ss_pred cc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1296 QG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1296 ~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
.+ |+++|+.... ..+ ++++.++++.+++.+.. +..+ .+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 86 9999996421 122 34577788888876543 3333 4699999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1368 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 46899999999999875 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=340.38 Aligned_cols=198 Identities=33% Similarity=0.513 Sum_probs=165.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..|+++|.+|+|+.+ +.|+| ||++++|++++|+||||||||||+|+|+|.++|.+|++ .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 368999999999742 69999 99999999999999999999999999999999999997 6654
Q ss_pred --EEEEEcCC---CCCCCCcHHHHHhcCCCCC-----------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 --KKAYVPQS---SWIQTGTIRENILFGKDMR-----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 --~~ayv~Q~---~~i~~~Ti~enI~fg~~~~-----------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
+||||||. .|-|..||+|-+..|.... .+..+++++..++. |+ ......+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~----------~~r~i~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DL----------RDRQIGELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hh----------hCCcccccCc
Confidence 59999996 4678889999999985432 24455555555544 21 2345668999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1458)
||+|||-|||||.++||+++|||||+++|+.++..+++ ++..+. +|+||++||||++.+. .+|+|+.|+ +++...|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 99999999999999999999999999999999888776 565554 4899999999999876 599999885 5677889
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
++++..+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9998876
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=352.15 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=177.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCCHHHH-hcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDL-RSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~L-R~~ 1284 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 35999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred eEEEccCCCCccc-cHHHhcCcC----CC------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQ------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1458)
++|+||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999987 899998521 10 11 23456667777664211 233332 2499999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCEEEEEeCCEEEEecCh
Q 000505 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1350 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~--~DrVlvL~~G~ivE~g~p 1426 (1458)
|||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999864 46899999999999976 799999999999999998
Q ss_pred hHHh
Q 000505 1427 RQLL 1430 (1458)
Q Consensus 1427 ~~Ll 1430 (1458)
+++-
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=367.15 Aligned_cols=214 Identities=24% Similarity=0.390 Sum_probs=185.7
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----CHHHHhc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1283 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1283 (1458)
|++ |++++|... .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ceEEEccCCCCccc-cHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
+++|+||++.+|.. |+++|+... ....++++.++++.+++.+...+.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 99999999999975 999999742 3344567888999988876554433 4799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F 1437 (1458)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...|
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~ 224 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRP 224 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchhh
Confidence 9999999999999999999999999987653 6899999999998866 99999999999999999999998776333
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=328.02 Aligned_cols=203 Identities=29% Similarity=0.460 Sum_probs=172.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
...|+++++++++.+ ..++++ ||+|++||+++|+||+||||||||++|+|+++|++|++ .+.|
T Consensus 6 ~~~I~vr~v~~~fG~--------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD--------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC--------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 457999999999964 478899 99999999999999999999999999999999999997 7776
Q ss_pred ---------EEEEEcCCCCCCCC-cHHHHHhcCC----CCCHHHHHHH----HHHhhhhhh-HHhhcCCCcccccCCCCC
Q 000505 660 ---------KKAYVPQSSWIQTG-TIRENILFGK----DMRQSFYEEV----LEGCALNQD-IEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 ---------~~ayv~Q~~~i~~~-Ti~enI~fg~----~~~~~~y~~v----l~~c~l~~d-l~~l~~gd~t~ig~~g~~ 720 (1458)
++|+++|+.-+|+. ||+||+.|.. .+.++..++. +++++|..+ .+.+ ..+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chh
Confidence 36999999999865 9999999963 2344444433 566777666 4443 458
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC--CcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
||||++.|++||||+..||+++++|||||+|||.++. .|+++++.+.+ +-|+++||||++.+.. ||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999755 55777876653 7899999999998765 999999999999
Q ss_pred EEcccchhhhhhcc
Q 000505 798 EQSGKYEDLIADQN 811 (1458)
Q Consensus 798 ~~~g~~~~l~~~~~ 811 (1458)
...|+++|+.+..+
T Consensus 225 ~~~Gt~~el~~sd~ 238 (263)
T COG1127 225 IAEGTPEELLASDD 238 (263)
T ss_pred EEeCCHHHHHhCCC
Confidence 99999999988333
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=391.69 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=96.9
Q ss_pred ccCc-cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000505 1333 LLDA-PVAEDGENWSVGQRQLVCLARVLLKKK---RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI 1407 (1458)
Q Consensus 1333 gLdt-~v~e~G~nLSgGQrQrl~LARALLr~~---~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~ 1407 (1458)
||+. ..+.....||||||||+.|||+|+++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4544 356667789999999999999999999 9999999999999999999999998764 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCCChHHHHHHH
Q 000505 1408 DNDLVLVL------DEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1408 ~~DrVlvL------~~G~ivE~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
.||+|++| ++|+|++.|+|+++.+++.+.=.+.++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 99999999 7999999999999998776655444443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=349.74 Aligned_cols=231 Identities=36% Similarity=0.624 Sum_probs=197.6
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHH
Q 000505 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1458)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1458)
.+.+-|..+.+++...+ ..++...++++|+++.+ .+.+++ ||++++|++++|+|+||||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDRK--HSSDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhcccccccccc--cCCCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 34555555443322222 22345679999999962 257899 999999999999999999999999999
Q ss_pred hCCccCCCCcEEEECCEEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 644 lG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
+|+++|.+|++ .++|.++|++|++++++.|++||+.++....+.++.+.++++.+.+.+..++.+..+.+++.+.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999997 89999999999999988999999999865555566777888888888888898888888899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1458)
|||||++||||++.+|+++||||||++||+.+...+.+.++..+.+++|+|++||+++++..||++++|++|+++..|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999998887776555555568999999999999888999999999999999999
Q ss_pred hhhhh
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~~l~~ 808 (1458)
+++..
T Consensus 243 ~~~~~ 247 (282)
T cd03291 243 SELQS 247 (282)
T ss_pred HHHHh
Confidence 88875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=352.85 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=183.8
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC--------CcEEEEcCeeCCCCCHH
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--------GGRILIDGVDISMIGLQ 1279 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~--------~G~I~IDG~dI~~i~l~ 1279 (1458)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhcceEEEccCCC-CccccHHHhcCcCC--------CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000505 1280 DLRSRLSIIPQDPM-LFQGTVRTNLDPLE--------QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1458)
.+|+.++|+||++. +|..|+++|+.... .. .++.++++++..++.+.. + .....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-------G----RDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-------c----CCcccCCH
Confidence 88889999999986 57889999996421 11 123467788888775432 2 23357999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhh-hcCEEEEE
Q 000505 1348 GQRQLVCLARVLL---------KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVL 1415 (1458)
Q Consensus 1348 GQrQrl~LARALL---------r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~-~~DrVlvL 1415 (1458)
|||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998643 689999999999986 49999999
Q ss_pred eCCEEEEecChhHHhh
Q 000505 1416 DEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1416 ~~G~ivE~g~p~~Ll~ 1431 (1458)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=347.94 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=148.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.+-+.||+|.|+... |.+++++|-|.--.+|+||||+|-|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 356899999997654 58999999999999999999999999999999999999999986533 355788
Q ss_pred EEccCCC--C-ccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1287 IIPQDPM--L-FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1287 iIpQdp~--L-F~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
...|... | -..|--+.|.-.-...-++-..+|...||....... .-..||||||-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 8888652 1 122544544332233445566777777765433211 12469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC-EEEEEeCCEEEEe
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDND-LVLVLDEGKVLEY 1423 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~D-rVlvL~~G~ivE~ 1423 (1458)
+||||||||++||.++-..+-++|+++ +..||+|+|+-..|..-| ..+|+++-.|-|.
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 999999999999999999999999985 458999999988886533 3456665555443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=351.11 Aligned_cols=221 Identities=23% Similarity=0.368 Sum_probs=185.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEEcCeeCCCCC-----H
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIG-----L 1278 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~-----l 1278 (1458)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 45999999999999999999999999999999999999986 499999999987542 3
Q ss_pred HHHhcceEEEccCCCCccc-cHHHhcCcCC---------------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000505 1279 QDLRSRLSIIPQDPMLFQG-TVRTNLDPLE---------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1458)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~---------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1458)
..+|++++|+||++.+|.+ |+++|+.... ...++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 9999996311 1113456778888877654322 23
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCE
Q 000505 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGK 1419 (1458)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ 1419 (1458)
..||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+. .||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999864 3789999999999875 499999999999
Q ss_pred EEEecChhHHhhcCCChHHHHHHH
Q 000505 1420 VLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1420 ivE~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
+++.|+|+++ . +....+++.+
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhh
Confidence 9999999996 2 2345555443
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=350.19 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=173.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999642 1122 2356778888887654432 2357999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEe--CCEEEEecCh
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKVLEYDSP 1426 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~--~G~ivE~g~p 1426 (1458)
+++|++|+|||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 37999999999999865 99999998 5999998764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=353.89 Aligned_cols=204 Identities=30% Similarity=0.406 Sum_probs=172.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1458)
.|+++|++.+|.+. . .+++ |++|++||+++++|||||||||||++|+|+.+|++|++ .++|+
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999753 2 8999 99999999999999999999999999999999999997 78774
Q ss_pred ---EEEEcCCCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 661 ---KAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 661 ---~ayv~Q~~~i-~~~Ti~enI~fg~~~~-------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
+|+|+|+.-+ +..||+|||.||.... +.+.+++.+...+++-++ .+..+|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHH
Confidence 6999999877 4679999999997654 345555666666665544 45679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchhhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 807 (1458)
|||||+.++|+++|||||+|+||++.+..+-.++.+-.. -+.|+|+||||..++- -+|+|.+|++|+|.+.|++.|+.
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 999999999999999999999999998777655433222 3789999999998865 59999999999999999999998
Q ss_pred hhcchH
Q 000505 808 ADQNSE 813 (1458)
Q Consensus 808 ~~~~~~ 813 (1458)
..+...
T Consensus 223 ~~P~n~ 228 (338)
T COG3839 223 ERPANL 228 (338)
T ss_pred hCccch
Confidence 744433
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=350.79 Aligned_cols=224 Identities=23% Similarity=0.370 Sum_probs=183.7
Q ss_pred cEEEEeeeEEeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH
Q 000505 1207 KIELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1279 (1458)
.|+++||+++|+.+ ..++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 24699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcceEEEccCCC--Cc-cccHHHhcCc-C---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1280 ---DLRSRLSIIPQDPM--LF-QGTVRTNLDP-L---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1280 ---~LR~~i~iIpQdp~--LF-~gTIR~NLdp-~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
.+|++++|+||+|. ++ ..|+++|+.. . ...+ .+.+.+.++..++.. .........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 47889999999983 44 3599999742 1 1111 123445555554421 1223345679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
|+|||||++|||||+++|+||||||||++||.++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987643 7899999999999975 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 000505 1423 YDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~F~~l~ 1441 (1458)
.|+++++.. .++.+..-+
T Consensus 233 ~g~~~~~~~-~~~~~~~~~ 250 (268)
T PRK10419 233 TQPVGDKLT-FSSPAGRVL 250 (268)
T ss_pred eCChhhccC-CCCHHHHHH
Confidence 999999885 455554333
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=328.87 Aligned_cols=171 Identities=44% Similarity=0.745 Sum_probs=161.7
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+...+.+++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000505 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ 1419 (1458)
|||||++||+.+...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998767799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=340.64 Aligned_cols=204 Identities=26% Similarity=0.399 Sum_probs=178.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++.+++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EccCCCCcc-ccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+||++.+|. .|+++|+... ....++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998632 234567788899999887654332 2469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhH
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998764 4689999999999985 499999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=343.55 Aligned_cols=202 Identities=23% Similarity=0.320 Sum_probs=175.6
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH---HHh
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1282 (1458)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEccCCCCcc-ccHHHhcCcCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1283 SRLSIIPQDPMLFQ-GTVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
+.++|+||+|.+|. .|+.+|+.... ..+. +++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999997421 2222 34667778888766655443 46999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKV 1420 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~~DrVlvL~~G~i 1420 (1458)
+||||++++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988653 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=325.88 Aligned_cols=215 Identities=26% Similarity=0.442 Sum_probs=184.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-Hhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1458)
-++++|++..|.+ -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||...+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3689999999976 35999999999999999999999999999999999999999999999999999999987 68899
Q ss_pred EEEccCCCCccc-cHHHhcCcCCC-CCH-----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-HSD-----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~sd-----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
+||||...+|.. ||.|||..... ..+ ..+.++.+. .| -|.......+.+|||||+|-++||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Ch-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999976 99999974311 111 112223222 22 12333445567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
|+.+||+|+|||||.+|-|.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|++++|++++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998764 4599999999998764 9999999999999999999999765
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=342.14 Aligned_cols=176 Identities=27% Similarity=0.413 Sum_probs=131.2
Q ss_pred EeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCC-CCccccHHHhcCcCC--
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNLDPLE-- 1307 (1458)
Q Consensus 1231 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1307 (1458)
+|..||.+||+||||-||||++++|.|.++|++|+ ..++ +++|=||-- .-|+|||++-|.--.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45668899999999999999999999999999998 2222 689999952 238999998874211
Q ss_pred CCCHHHHH-HHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 000505 1308 QHSDQEIW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386 (1458)
Q Consensus 1308 ~~sdeeI~-~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~ 1386 (1458)
.+.+.-.+ +..+-.+|.+ -+|.+| .+|||||.||+++|-||.|++++.+||||+|.||.+-.-.+-++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~-------i~e~~v----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLED-------LLERPV----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcCccchHH-------HHhccc----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 12222111 1222223322 234445 46999999999999999999999999999999999999999999
Q ss_pred HHHh--cCCcEEEEEecChhhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 000505 1387 IREE--TSRCTVITVAHRIPTVID-NDLVLVLDE--GKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1387 I~~~--~~~~TVI~IAHrl~ti~~-~DrVlvL~~--G~ivE~g~p~~Ll~ 1431 (1458)
||+. ..++|.++|-|++-.+.- +||++|.+. |+=-....|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 9874 357899999999988754 999999963 22222345666654
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.76 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=180.3
Q ss_pred EEEeeeEEEeCCcccccCCC--cccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEcCC
Q 000505 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~--~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~ 667 (1458)
++++|++++|+.. .. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|.++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4689999999643 10 368999 99999999999999999999999999999999999997 899999999999
Q ss_pred CCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000505 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1458)
Q Consensus 668 ~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep 747 (1458)
|.+++.|++||+.++.++++++..++.+.+++.+.+..+|.|..+.+++++.+||||||||++||||++++|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999877766677778888899889999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCe
Q 000505 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1458)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1458)
|++||++..+.+++.++.... +++|+|++||+++.+..||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999998888876665443 4789999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=337.77 Aligned_cols=216 Identities=25% Similarity=0.394 Sum_probs=189.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCe---eCCCCCHHHHhc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV---DISMIGLQDLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~---dI~~i~l~~LR~ 1283 (1458)
.|+++|++.+|+. -.+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++. +.-.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 3778888888864 35899999999999999999999999999999999999999999999999 77763 33446
Q ss_pred ceEEEccCCCCccc-cHHHhcCcCC---------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPLE---------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~~---------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
+||+|.|+..||.. ||++|+.+.- ...+..+.+.|+.|+|...-.+-| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 89999999999976 9999997542 123455777889999887766655 46899999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+|||||.-.|++|+||||.++||..-...+++-|++.. -++|++.|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999988754 37899999999998865 9999999999999999999999
Q ss_pred hcCCChH
Q 000505 1431 EDNSSSF 1437 (1458)
Q Consensus 1431 ~~~~s~F 1437 (1458)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9999887
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=363.50 Aligned_cols=212 Identities=24% Similarity=0.373 Sum_probs=181.2
Q ss_pred eeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC----HHHHhcceEE
Q 000505 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQDLRSRLSI 1287 (1458)
Q Consensus 1212 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~----l~~LR~~i~i 1287 (1458)
|++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 889999642 35 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EccCCCCccc-cHHHhcCcC-CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1288 IPQDPMLFQG-TVRTNLDPL-EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~-~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
+||+|.+|.+ |+++|+... .... ++++.+.++..++.+...+. ...||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999986 999999742 1111 23467778888776544332 24699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~ 1438 (1458)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999988643 6899999999999876 999999999999999999999987765553
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=337.88 Aligned_cols=203 Identities=33% Similarity=0.458 Sum_probs=168.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1458)
|.+++.+-.|+. .+.++| +++|+.||.+|+.|||||||||||++|+|+..|++|.+ .++|+
T Consensus 3 i~i~~~~~~~~~--------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~~ 73 (345)
T COG1118 3 IRINNVKKRFGA--------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNLA 73 (345)
T ss_pred eeehhhhhhccc--------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhccc
Confidence 566777766753 366778 99999999999999999999999999999999999986 77775
Q ss_pred -----EEEEcCCCCCC-CCcHHHHHhcCCCCC---------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 661 -----KAYVPQSSWIQ-TGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 661 -----~ayv~Q~~~i~-~~Ti~enI~fg~~~~---------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
||||+|+.-+| ..||.|||.||.+.. +.+.++.++.|.|+.--+ .....|||||
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQ 142 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQ 142 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHH
Confidence 69999997765 679999999997432 344555666676654322 4567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchh-ccCCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g~ 802 (1458)
||||||||||..+|+++||||||+|||++..+.+-. .+.... + +.|+++||||.++. +.||+|++|++|+|.+.|+
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~-wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH-HHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 999999999999999999999999999999877644 444433 3 78999999999986 4599999999999999999
Q ss_pred chhhhhhcchHH
Q 000505 803 YEDLIADQNSEL 814 (1458)
Q Consensus 803 ~~~l~~~~~~~~ 814 (1458)
++|+...++..|
T Consensus 222 p~ev~~~P~s~f 233 (345)
T COG1118 222 PDEVYDHPASRF 233 (345)
T ss_pred HHHHhcCCCccc
Confidence 999987555544
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=341.38 Aligned_cols=210 Identities=30% Similarity=0.454 Sum_probs=180.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|+++.|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4688999999642 2468999 99999999999999999999999999999999999986 6766
Q ss_pred ---EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
.++|++|++++++.|++||+.++.. .......+.++...+.+.++.++.|..+..+.++.+|||||||||+||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3799999999998999999998653 233344444555666666777887877778889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
+.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++..||+|++|++|++++.|+.+++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMR-NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999887765 4555556899999999999997899999999999999999988876
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=344.10 Aligned_cols=222 Identities=20% Similarity=0.346 Sum_probs=181.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCee-----CCCCCHHH-
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1280 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---HhcceEEEccCCC--C-ccccHHHhcC----cCCC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1281 ---LRSRLSIIPQDPM--L-FQGTVRTNLD----PLEQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1281 ---LR~~i~iIpQdp~--L-F~gTIR~NLd----p~~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
+|+.++++||+|. + +..|+.+|+. .+.. ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3457888863 1111 12344555566555531 12233456799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
||||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998754 37899999999999985 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 000505 1424 DSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1424 g~p~~Ll~~~~s~F~~l 1440 (1458)
|+++++..++...|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655555443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.94 Aligned_cols=170 Identities=31% Similarity=0.532 Sum_probs=157.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 25999999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEEeCCEE
Q 000505 1367 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKV 1420 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL~~G~i 1420 (1458)
+|||||++||..+...+.+.|++.. ++.|+|+++|+.+.+. .||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 3589999999999887 4999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=327.15 Aligned_cols=172 Identities=35% Similarity=0.530 Sum_probs=159.1
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--HHHHhcce
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1285 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1285 (1458)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 45999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998643 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000505 1365 ILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ 1419 (1458)
+++|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=341.90 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=179.7
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999987 34799
Q ss_pred EEccCCCCcc---ccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1287 IIPQDPMLFQ---GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1287 iIpQdp~LF~---gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
|+||+|.++. .|+++|+......+++++.++++.+++.+.... . ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-------P----MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-------C----hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 388998754334567788999999998766533 2 2469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~l 1440 (1458)
++|+|||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++ ++++.|+++++.+ +..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHHHH
Confidence 99999999999999999999999987643 7899999999999865 999999965 7999999999874 3345555
Q ss_pred H
Q 000505 1441 V 1441 (1458)
Q Consensus 1441 ~ 1441 (1458)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=332.55 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=163.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCcEEEEcCeeCCCCCHHHH-hcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDL-RSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~L-R~~ 1284 (1458)
++++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred eEEEccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999886 5665550 0 11369999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh--hcCEEEEEeCCEEEEecChhHHh
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI--DNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~--~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
+||+|||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998764 3789999999999988 59999999999999999 56665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=318.84 Aligned_cols=204 Identities=24% Similarity=0.361 Sum_probs=169.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCC-----CcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-----G~~i~~~g--- 659 (1458)
..++++|.++.|.. ...|++ |+.|++++++|++||+||||||||+++.+..+..+ |++ .++|
T Consensus 6 ~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCeec
Confidence 46899999999974 368999 99999999999999999999999999999877665 554 4554
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCCCC---HHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR---QSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~---~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
++|+|+|.|--|..||+|||.+|.... +.. .++.++..+|-+..+. .+.+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 359999999999999999999996432 122 3334444444433321 24467788
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
|||||+||++||||+.-+|+|+|||||||||||-+..+| ++++..+.++-|||+|||+++...+ +|+...+.+|++++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999988777 6678888888999999999998766 99999999999999
Q ss_pred cccchhhhhh
Q 000505 800 SGKYEDLIAD 809 (1458)
Q Consensus 800 ~g~~~~l~~~ 809 (1458)
.|+.+++...
T Consensus 229 ~g~T~~iF~~ 238 (253)
T COG1117 229 FGPTDKIFTN 238 (253)
T ss_pred EcCHHhhhcC
Confidence 9999988763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=351.18 Aligned_cols=207 Identities=33% Similarity=0.427 Sum_probs=174.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1458)
..++++|++-+|.+ ...++| ||+|++||+++++|||||||||||++|+|..+|++|++ .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46899999999973 478999 99999999999999999999999999999999999986 88884
Q ss_pred ----EEEEcCCCCCC-CCcHHHHHhcCCCCC-----H---HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHH
Q 000505 661 ----KAYVPQSSWIQ-TGTIRENILFGKDMR-----Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 661 ----~ayv~Q~~~i~-~~Ti~enI~fg~~~~-----~---~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 727 (1458)
+++|+|+--+| +.||+|||.||.... + ++.+++++..+|..- -..+...|||||||
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-----------~~R~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF-----------ADRKPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh-----------hhhChhhhChHHHH
Confidence 59999997775 679999999997722 2 245555555554432 23567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccch-hccCCEEEEEeCCeEEEcccchh
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~D~i~~l~~G~i~~~g~~~~ 805 (1458)
||||||||..+|+++|||||+||||.+-+.++-.++..... .|.|.|+||||.++ +..+|||.+|++|+|.+.|+++|
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999998888776554332 38999999999987 56799999999999999999999
Q ss_pred hhhhcchHHH
Q 000505 806 LIADQNSELV 815 (1458)
Q Consensus 806 l~~~~~~~~~ 815 (1458)
+...+...|.
T Consensus 224 iY~~P~~~fV 233 (352)
T COG3842 224 IYERPATRFV 233 (352)
T ss_pred HhhCcchHHH
Confidence 9876555543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=314.28 Aligned_cols=214 Identities=28% Similarity=0.402 Sum_probs=186.5
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
+++.+++.+|.+ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+- +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999976 23489999999999999999999999999999999999999999999999999884 5778999999
Q ss_pred EccCCCCccc-cHHHhcCcCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
++-+.-++.. |.||||..|+ +.++. ++.+.-+..++.++. |..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHHH
Confidence 9976666654 9999998664 33333 455556666766664 44554 5999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhh-hcCEEEEEeCCEEEEecChhHHhhcCC
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHrl~ti~-~~DrVlvL~~G~ivE~g~p~~Ll~~~~ 1434 (1458)
.++|+|++||||||+||..|.+.+++.|++... +++||.-+|.++.+. -||+|+++.+|+++..|+++++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999999999999999999999999999998764 899999999999998 599999999999999999999987543
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=347.28 Aligned_cols=208 Identities=25% Similarity=0.376 Sum_probs=175.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHh-cce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1285 (1458)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 48999999999633 459999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEccCCCC---ccccHHHhcCcC--------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000505 1286 SIIPQDPML---FQGTVRTNLDPL--------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1458)
Q Consensus 1286 ~iIpQdp~L---F~gTIR~NLdp~--------~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1458)
+|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. |+.+ .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHH
Confidence 999999865 456889987521 0 11234567788888886543 3344 369999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000505 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1352 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998764 47899999999998854 9999777 8999999999998
Q ss_pred hh
Q 000505 1430 LE 1431 (1458)
Q Consensus 1430 l~ 1431 (1458)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=319.66 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=184.2
Q ss_pred ccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-Hhcc
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSR 1284 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~ 1284 (1458)
+.+..+|+..+|.. ..|.+|+||++++||.||+.||+|+||||.+..+.|++.|++|+|.+||.||+.++.+. -|-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999975 46999999999999999999999999999999999999999999999999999999986 6778
Q ss_pred eEEEccCCCCccc-cHHHhcCcCCCCCH---------HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPLEQHSD---------QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~~sd---------eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
|||+||||.+|.+ ||++||...-+..+ +++.+.|+..++... -...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHH
Confidence 9999999999988 99999964322211 223344444444332 22345689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~-ti~~~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|||||..+|+.++||||.|++||-+-..||+.|+... ++--|++.-|... |+.-|||.+++.+|+|...|+|+++.+|
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998764 4667888889976 5566999999999999999999999987
Q ss_pred C
Q 000505 1433 N 1433 (1458)
Q Consensus 1433 ~ 1433 (1458)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 5
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.90 Aligned_cols=228 Identities=25% Similarity=0.437 Sum_probs=185.9
Q ss_pred EEEEeeeEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-C----CCcEEEEcCeeCCCCCHHH
Q 000505 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-P----SGGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-p----~~G~I~IDG~dI~~i~l~~ 1280 (1458)
++++|+++.|..+. -.+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997543 368999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred Hh----cceEEEccCCCC-ccc--cHHHhc----CcCCCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1281 LR----SRLSIIPQDPML-FQG--TVRTNL----DPLEQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1281 LR----~~i~iIpQdp~L-F~g--TIR~NL----dp~~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
+| +.|++|||||.- |+- ||.+-+ ...... + .+...+.|+.+++.+--+ .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 43 489999999841 221 333332 111111 1 235677888888764311 11223357
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv 1421 (1458)
||||||||+.||-||+.+|++||-||||++||..+.++|.+.|++.. .++|+|+|||++..+.. ||||.||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998765 48999999999999866 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHH
Q 000505 1422 EYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1422 E~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
|.|+.+++++++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999998888765443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=341.01 Aligned_cols=203 Identities=23% Similarity=0.338 Sum_probs=168.7
Q ss_pred EEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCCHHHHh
Q 000505 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR 1282 (1458)
++|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cceEEEccCCCCccc-cHHHhcCcC---C--CCCHH-----HHHH-HHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1283 SRLSIIPQDPMLFQG-TVRTNLDPL---E--QHSDQ-----EIWE-VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sde-----eI~~-aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
++++|+||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999988 999999632 1 11111 1122 333333322 22233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhh-hhcCEEEEEeCCEEEEec
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRI-PTV-IDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl-~ti-~~~DrVlvL~~G~ivE~g 1424 (1458)
||++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+++|++ ..+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 468999999998 355 559999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=335.51 Aligned_cols=200 Identities=23% Similarity=0.362 Sum_probs=169.7
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----CHHHHhc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1283 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1283 (1458)
+++ ||+++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 355 899999753 24 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ceEEEccCCCCccc-cHHHhcCcC-CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPL-EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~-~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+++|+||++.+|.+ |+++|+... ..+ .++++.+.++..++.+... .....||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 99999999999865 999999642 111 2345677777777755432 233579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
|++++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987643 7899999999999865 9999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=307.45 Aligned_cols=197 Identities=26% Similarity=0.403 Sum_probs=166.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccCcEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~---------- 660 (1458)
+.+++++|+|+.. . +.-++.|++||++||+||+||||||||+.|+|...|.+|++ .++|.
T Consensus 2 l~L~~V~~~y~~~-------~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL-------P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc-------e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567888998743 1 11168899999999999999999999999999999999987 78774
Q ss_pred -EEEEcCCCCCCC-CcHHHHHhcCCC-------CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHH
Q 000505 661 -KAYVPQSSWIQT-GTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1458)
Q Consensus 661 -~ayv~Q~~~i~~-~Ti~enI~fg~~-------~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1458)
+++++|+.-+|. .||++||-+|.. .++++.+.+....+|....+.+|. +|||||||||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHH
Confidence 699999999986 599999999963 234566667777777776666654 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
||++.++-+|+|||||||||||.-+..+.. ++..+. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999998877765 344333 47899999999999875 99999999999999999999876
Q ss_pred h
Q 000505 809 D 809 (1458)
Q Consensus 809 ~ 809 (1458)
.
T Consensus 220 ~ 220 (231)
T COG3840 220 G 220 (231)
T ss_pred c
Confidence 3
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=331.33 Aligned_cols=190 Identities=25% Similarity=0.310 Sum_probs=161.7
Q ss_pred cEEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCCHHHH
Q 000505 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~L 1281 (1458)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999753 4579999999999999999999999999999999999999 89999999999998764 457
Q ss_pred hcceEEEccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1458)
|++++|+||++.+|.+ |+++|+...... . .+.. ...||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~~~----~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GNEF----VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cccc----hhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 2222 3469999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEe-cChhhh-hhcCEEEEEeCCEEEEec
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVA-HRIPTV-IDNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1361 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IA-Hrl~ti-~~~DrVlvL~~G~ivE~g 1424 (1458)
++|++|+|||||++||+++.+.+.+.|++..+ ++|+|+++ |+.+.+ ..||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46766655 555666 459999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=335.77 Aligned_cols=210 Identities=29% Similarity=0.467 Sum_probs=184.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 47899999999632 358999 99999999999999999999999999999999999986 6765
Q ss_pred ----EEEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
.++|++|+++++..|++||+.++.+. ...+.++.++.+++.+.++.+|.|..+..+....+|||||||||+||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 37999999999888999999987543 3455666777788888888888888888888999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
++++|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.++.||++++|++|++.+.|+++++..
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999887765 5555556899999999999988899999999999999988877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=326.81 Aligned_cols=172 Identities=27% Similarity=0.481 Sum_probs=156.4
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH-HHHhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1285 (1458)
.|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988874 4578899
Q ss_pred EEEccCC----CCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1286 SIIPQDP----MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1286 ~iIpQdp----~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864210 99999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~i 1420 (1458)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999764 47899999999999977 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=340.06 Aligned_cols=219 Identities=29% Similarity=0.364 Sum_probs=190.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+.. ....+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 18 ~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCCH
Confidence 469999999999742 2458899 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
.++|++|+|+++++|++||+........+.+.+.++..++.+.++.+|.|..+.+++.+.+||||||||++||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 379999999999999999997664444556677777788888888999898899999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhhhcchHH
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~ 814 (1458)
++++|++++|||||++||+++...+++ ++..+.+++|+|++||+++.+..||+|++|++|++++.|+++++.+.....+
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~ 249 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVF 249 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHH
Confidence 999999999999999999998766654 5555556899999999999988899999999999999999988876333333
Q ss_pred H
Q 000505 815 V 815 (1458)
Q Consensus 815 ~ 815 (1458)
.
T Consensus 250 ~ 250 (257)
T cd03288 250 A 250 (257)
T ss_pred H
Confidence 3
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=328.86 Aligned_cols=182 Identities=27% Similarity=0.402 Sum_probs=161.1
Q ss_pred cEEEEeeeEEeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCCHHH
Q 000505 1207 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~ 1280 (1458)
.|+++||+++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcceEEEccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000505 1281 LRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1281 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1458)
.|++++++||+|.+|.+ |+++|+... . .. + .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998421 0 00 0 6999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhh-hcCEEEEEeCCEEEEec
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVI-DNDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1360 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~-ti~-~~DrVlvL~~G~ivE~g 1424 (1458)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+. .||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 4789999999997 454 49999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=324.17 Aligned_cols=193 Identities=31% Similarity=0.406 Sum_probs=154.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++-.|.... .....|++ ||+|++||+++|+||+||||||||++|.|...|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 45778777776431 22578999 99999999999999999999999999999999999986 7777
Q ss_pred -------EEEEEcCCCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 -------KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 -------~~ayv~Q~~~i-~~~Ti~enI~fg~~~~-------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.+|||+|+..+ ++.|++|||.+...+. .++.+..++..+|.+.. ...+..+||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHH
Confidence 26999999664 6789999999642221 22233333333333221 12457799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCeEE
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~ 798 (1458)
|||||||||||+.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999875443333 388999999999999999999999999954
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=333.78 Aligned_cols=193 Identities=25% Similarity=0.361 Sum_probs=165.0
Q ss_pred EEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH----HHHhcce
Q 000505 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSRL 1285 (1458)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~i 1285 (1458)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 359999999999999999999999999999999999999999999999999775542 2467899
Q ss_pred EEEccCCCCcc-ccHHHhcCcC---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPL---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~---~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
+|+||+|.+|. .|+++|+... .. ..++++.++++..++.+.. |..+ .+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-------KQKI----YELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-------cCCh----hhCCHHHHHHHHHHH
Confidence 99999999997 5999999641 11 1244577788888875543 2333 469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEE
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL 1415 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL 1415 (1458)
||+++|++|+|||||++||+++.+.+.+.|++.. ++.|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 378999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.92 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=178.0
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCcEEEEcCeeCCCCCHHHHhc-
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDLRS- 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~LR~- 1283 (1458)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ceEEEccCCCCccc-cHHHhcCcC-C------C---CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPL-E------Q---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~-~------~---~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1458)
.++++||+|.+|.+ |+++|+... . . .. .+++.++++.+++.+. .++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCHH
Confidence 58999999999987 789987531 1 0 01 1335566777776421 1233332 249999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCEEEEEeCCEEEEecC
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~--~DrVlvL~~G~ivE~g~ 1425 (1458)
||||++|||||+++|+||||||||++||..+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998764 47899999999999875 89999999999999999
Q ss_pred hhHH
Q 000505 1426 PRQL 1429 (1458)
Q Consensus 1426 p~~L 1429 (1458)
|+.+
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9843
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=324.35 Aligned_cols=177 Identities=32% Similarity=0.525 Sum_probs=160.6
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000505 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1458)
Q Consensus 1289 pQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlL 1368 (1458)
|| +++.+++.+.... ...+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765432 2357999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1369 DEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 6899999999999854 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.91 Aligned_cols=211 Identities=32% Similarity=0.476 Sum_probs=182.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|+++.|+.. ...+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4688999999643 22468999 99999999999999999999999999999999999986 6766
Q ss_pred ---EEEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
.++|++|++.+++.|++||+.++... ..+..++.++.+.+.+.++.+|.|..+..+....+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 37999999998888999999987543 33445556677777777788888888888888999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
+.+|+++||||||++||+++...+.+ ++..+.+++|+|++||+++++..||+|++|++|++++.|+.+++..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQE-ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999877765 4554447899999999999988899999999999999998877765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=318.71 Aligned_cols=164 Identities=34% Similarity=0.422 Sum_probs=150.6
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 45999999999999999999999999999999999999999999999983 68999
Q ss_pred EccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
+||+|.++++|+++|+... ....||+|||||++||||++++|++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999998642 135799999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000505 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G~ 1419 (1458)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 589999999999888899999998864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.80 Aligned_cols=210 Identities=31% Similarity=0.490 Sum_probs=183.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|.+++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4688999999642 2368899 99999999999999999999999999999999999987 6765
Q ss_pred ---EEEEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
.++|++|+++++..|++||+.++.. .....+.+.++.+.+.+.++.++.|..+..+.+..+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 2799999999988999999998754 344556666677778888888888877888889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
+.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+..||+|++|++|++.+.|+.+++..
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999777755 5666556899999999999988899999999999999999888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=328.37 Aligned_cols=181 Identities=23% Similarity=0.320 Sum_probs=160.0
Q ss_pred cEEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCCHHHHh
Q 000505 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR 1282 (1458)
.|+++|++++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEccCCCCccc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1283 SRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998621 0000 699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeC-CEEEEec
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE-GKVLEYD 1424 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~t-i-~~~DrVlvL~~-G~ivE~g 1424 (1458)
+|++|+|||||+++|.++...+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999764 47899999999984 4 56999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=335.86 Aligned_cols=206 Identities=22% Similarity=0.346 Sum_probs=170.4
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC----CCcEEEEcCeeCCCCCHHHHhcceEEEccCCC-Ccc--
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ-- 1296 (1458)
Q Consensus 1224 vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-- 1296 (1458)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred ccHHHhcCc----CCCC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000505 1297 GTVRTNLDP----LEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1297 gTIR~NLdp----~~~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1369 (1458)
-|+.+|+.. .... .++++.++++.+++.+. +........+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888631 1111 23457788888887521 01122234579999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000505 1370 EATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439 (1458)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F~~ 1439 (1458)
|||++||..+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998643 6899999999999965 9999999999999999999998766555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=330.40 Aligned_cols=205 Identities=29% Similarity=0.398 Sum_probs=182.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.. ..+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 37899999999743 2468999 99999999999999999999999999999999999987 6665
Q ss_pred ----EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
.++|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++.+.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 3799999999998999999987766666666777788888888888899999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEccc
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1458)
+.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999998777765 5555556789999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.34 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=174.9
Q ss_pred EEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEE
Q 000505 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1458)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1458)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778775 27999999999999999999999999999999999986 499999999999988888888899999
Q ss_pred ccCCC-CccccHHHhcCcCCC-C-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1289 PQDPM-LFQGTVRTNLDPLEQ-H-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1289 pQdp~-LF~gTIR~NLdp~~~-~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
||+|. .+..|+++|+..... . + ++++.++++..++.+.. +.. ...||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-------GRS----VNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-------cCC----cccCCHHHHHHHHHHHHHhc
Confidence 99985 456799999974321 1 1 23566777777775433 222 34699999999999999997
Q ss_pred -------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1362 -------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1362 -------~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+|++|+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998764 47899999999997754 99999999999999999999874
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=333.33 Aligned_cols=209 Identities=33% Similarity=0.531 Sum_probs=182.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1458)
++++|++++|+.+ .+.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4688999998632 357899 99999999999999999999999999999999999987 77662
Q ss_pred ----EEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000505 661 ----KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1458)
Q Consensus 661 ----~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1458)
++|++|++++++.|++||+.++... ......+.++.+.+.+.++.++.|..+.++.+..+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 7999999999999999999987542 33444566777788888888998988888889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhhh
Q 000505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
+++|+++||||||++||+++...+.+ ++..+.+++|+|++||+++++..||++++|++|++.+.|+.+++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999877765 4555545899999999999998899999999999999998887765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=330.59 Aligned_cols=199 Identities=32% Similarity=0.480 Sum_probs=170.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+|+|++. .+.+++ |+++++|+.++|+|+||||||||++++.|.++|++|.+ .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 47899999999753 578999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCC--CCCCCcHHHHHhcCCCC---C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 -----~~ayv~Q~~--~i~~~Ti~enI~fg~~~---~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
++|||+|+| .++..||.|.+.||... . +++.+++++.|++.+.. .....+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcc
Confidence 379999999 46789999999999642 2 24455666777765543 24567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
||||+||.+|..+|++++||||||+||+...+.+.+. +..+. . ++|+|++|||++++.. ||++++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~-l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL-LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 9999999999999999999999999999998888764 44443 3 5899999999999875 99999999999999999
Q ss_pred chhhhh
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~~l~~ 808 (1458)
++++.+
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 988876
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=351.08 Aligned_cols=201 Identities=27% Similarity=0.401 Sum_probs=167.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1458)
.++++|++++|+.+ .+.|++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|.
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 37899999999422 357999 99999999999999999999999999999999999987 77763
Q ss_pred ---EEEEcCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 661 ---KAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 661 ---~ayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
+|||+|++.++ +.||+|||.|+... .. ++.+++++..+|.+. .+....+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHH
Confidence 79999999887 56999999998542 22 223344444444332 3355679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+|||||+.+|+++|||||||+||+.+...+.+.+ +.+. + +.|+|+||||++++. .||+|++|++|++++.|+++++
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999988887654 4433 2 799999999999876 5999999999999999999998
Q ss_pred hhhc
Q 000505 807 IADQ 810 (1458)
Q Consensus 807 ~~~~ 810 (1458)
....
T Consensus 223 ~~~p 226 (356)
T PRK11650 223 YEKP 226 (356)
T ss_pred HhCC
Confidence 7643
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=373.34 Aligned_cols=216 Identities=22% Similarity=0.311 Sum_probs=145.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh------ccCC----C-----------CCcE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF------RVVE----P-----------SGGR 1265 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~------rl~~----p-----------~~G~ 1265 (1458)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488999862 2599999999999999999999999999997332 1111 1 1113
Q ss_pred EEEcCeeCCC---------CC-HHHHhcceEEEcc------CCCCccc--------------cHHHhc--C-------c-
Q 000505 1266 ILIDGVDISM---------IG-LQDLRSRLSIIPQ------DPMLFQG--------------TVRTNL--D-------P- 1305 (1458)
Q Consensus 1266 I~IDG~dI~~---------i~-l~~LR~~i~iIpQ------dp~LF~g--------------TIR~NL--d-------p- 1305 (1458)
|.||-.+|.. .+ .+.+|.-.+=.|+ .|-.|+- .+.-++ + |
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 5555444432 12 2346666655554 2333421 111111 0 0
Q ss_pred --CCCCCHHH---------HHHHHHHc--CcHHHHHhcc-----------cccCc-cccCCCCCCChhHHHHHHHHHHhc
Q 000505 1306 --LEQHSDQE---------IWEVINKC--HLAEIVRQDQ-----------RLLDA-PVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1306 --~~~~sdee---------I~~aL~~~--~L~~~i~~lp-----------~gLdt-~v~e~G~nLSgGQrQrl~LARALL 1360 (1458)
...+.+|- |-++|+.. ...+++..++ -||+. ..+.....|||||+||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 01111211 11111110 0111222111 14543 356667789999999999999999
Q ss_pred c---CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEE------eCCEEEEecChhHH
Q 000505 1361 K---KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL------DEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1361 r---~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL------~~G~ivE~g~p~~L 1429 (1458)
+ +|+++||||||++||+.+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|++++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998864 478999999999999899999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=327.61 Aligned_cols=204 Identities=33% Similarity=0.517 Sum_probs=177.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.++.|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 37899999999642 2468999 99999999999999999999999999999999999986 6766
Q ss_pred ----EEEEEcCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
.++|++|+++++..|++||+.++... .+.+..+.++.+++.+.++..|.|..|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 37999999998888999999887543 4456667788888888888889898888888899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcc
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1458)
+..+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++..||+|++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999877765 455555568999999999988779999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=299.22 Aligned_cols=198 Identities=26% Similarity=0.423 Sum_probs=174.6
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCc
Q 000505 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1458)
Q Consensus 1216 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1295 (1458)
+|.....++|+|+||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|++.++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 56655667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHhcC-cC---C-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000505 1296 QGTVRTNLD-PL---E-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1458)
Q Consensus 1296 ~gTIR~NLd-p~---~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1370 (1458)
.+||.+||- |+ + ..+...-.+-|+++++.+.+ |+.+ ..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~------L~k~----it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI------LTKN----ITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhh------hcch----hhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999985 43 2 23344456667777776654 3333 45799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh-hhhcCEEEEEeCCEEEEe
Q 000505 1371 ATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT-VIDNDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~t-i~~~DrVlvL~~G~ivE~ 1423 (1458)
+||+||..+.+.|.+.|...+ ++..|+.|||+.+. +..+||++.+..|++-|.
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 999999999999999998887 46799999999988 788999999999987543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.60 Aligned_cols=190 Identities=27% Similarity=0.388 Sum_probs=162.8
Q ss_pred eeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCCcc-ccHHHhc
Q 000505 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNL 1303 (1458)
Q Consensus 1225 L~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1303 (1458)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CcC-----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCC
Q 000505 1304 DPL-----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374 (1458)
Q Consensus 1304 dp~-----~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTss 1374 (1458)
... ...++ +++.+.++.+++.+.. +..+ ..||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-------DKRP----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-------cCCh----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 532 22332 2356777777776543 2333 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1375 IDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1375 lD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998764 37899999999999865 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=323.77 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=168.5
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 578999999964 35899999999999999999999999999999999999999999999999987643 568899999
Q ss_pred EccCCCCc-cccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000505 1288 IPQDPMLF-QGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1458)
+||+|.++ ..|+++|+... ....++++.++++..++.+.. +..+ .+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------DRPV----AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCch----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999654 234677888899999987543 2333 46999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcCEEEEE
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV-IDNDLVLVL 1415 (1458)
Q Consensus 1366 LlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti-~~~DrVlvL 1415 (1458)
|||||||++||+.+.+.+.+.|++.. +++|+|+|||+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998753 478999999987765 558999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=350.48 Aligned_cols=195 Identities=29% Similarity=0.356 Sum_probs=159.9
Q ss_pred cccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEcCCCCCCC
Q 000505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1458)
Q Consensus 611 ~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-----------------~~ayv~Q~~~i~~ 672 (1458)
...++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++| .++||+|+++++.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457889 99999999999999999999999999999999999987 6665 4799999999986
Q ss_pred -CcHHHHHhcCCCC---C-HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000505 673 -GTIRENILFGKDM---R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1458)
Q Consensus 673 -~Ti~enI~fg~~~---~-~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep 747 (1458)
.||+|||.|+.++ + +++++++.+.+.+. |-....++.+.+|||||||||+|||||+.+|+|+|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5999999987543 2 23334443333211 111234567789999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchhhhhhcchHH
Q 000505 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1458)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~ 814 (1458)
||+||+.+++++++.+..... .++|+|+||||++++. .||+|++|++|++++.|+++++......++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 999999999999876654433 3899999999999875 599999999999999999999876443333
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=335.20 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=168.2
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCCHHHHh-cc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR-SR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR-~~ 1284 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 35999999999999999999999999999999999995 69999999999999887776654 57
Q ss_pred eEEEccCCCCccc-cHHHhcC-------cCCCC---C----HHHHHHHHHHcCcHHHHHhccccc-CccccCCCCCCChh
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLD-------PLEQH---S----DQEIWEVINKCHLAEIVRQDQRLL-DAPVAEDGENWSVG 1348 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLd-------p~~~~---s----deeI~~aL~~~~L~~~i~~lp~gL-dt~v~e~G~nLSgG 1348 (1458)
++++||+|.++.. |..+++. ..... . ++.+.+.++..++ |+++ +..+ ..+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~---~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV---NVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC---CCCCCHH
Confidence 9999999987764 4444332 11100 0 1112223333332 2222 2222 1369999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh--cCEEEEEeCCEEEEecC
Q 000505 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDS 1425 (1458)
Q Consensus 1349 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHrl~ti~~--~DrVlvL~~G~ivE~g~ 1425 (1458)
||||++||||++++|+||+|||||++||.++...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987643 6899999999999887 89999999999999999
Q ss_pred hhHH
Q 000505 1426 PRQL 1429 (1458)
Q Consensus 1426 p~~L 1429 (1458)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=352.26 Aligned_cols=228 Identities=25% Similarity=0.424 Sum_probs=191.7
Q ss_pred cEEEEeeeEEeCCCCC--cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC----CcEEEEcCeeCCCCCHHH
Q 000505 1207 KIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS----GGRILIDGVDISMIGLQD 1280 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~--~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~----~G~I~IDG~dI~~i~l~~ 1280 (1458)
-++++|+++.|..... .+++||||++.+||.+||||.|||||||+.++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975433 5999999999999999999999999999999999999987 899999999999998766
Q ss_pred Hh----cceEEEccCCC-Cccc--cHHHhcCc----CC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000505 1281 LR----SRLSIIPQDPM-LFQG--TVRTNLDP----LE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1458)
Q Consensus 1281 LR----~~i~iIpQdp~-LF~g--TIR~NLdp----~~----~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1458)
+| ++|++|||||. .++- ||.+-+.- .. +...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 57999999994 4543 55555531 11 1123456778888887554332 2234679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
|||||||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999765 57899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHH
Q 000505 1423 YDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~F~~l~~~ 1443 (1458)
.|+++++++++...|.+..-+
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh
Confidence 999999999988777665533
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=332.93 Aligned_cols=191 Identities=27% Similarity=0.405 Sum_probs=160.0
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEc-cCCCCc-cccH
Q 000505 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLF-QGTV 1299 (1458)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp-Qdp~LF-~gTI 1299 (1458)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987653 346788999997 667776 4599
Q ss_pred HHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 000505 1300 RTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1458)
Q Consensus 1300 R~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaT 1372 (1458)
++|+... ...+++ .+.++++..++.+. +|+.+ ..||+|||||++|||||+++|++|+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122332 34455666666433 34444 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1373 ASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1373 sslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998643 6899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=382.93 Aligned_cols=207 Identities=28% Similarity=0.291 Sum_probs=146.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH---------HHhccCCCCC----c----EEEEc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ---------ALFRVVEPSG----G----RILID 1269 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~---------~L~rl~~p~~----G----~I~ID 1269 (1458)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2699999999999999999999999999999 4445332211 1 24555
Q ss_pred CeeCCCCC----H------HHHhc---------ce-----EEEccC------------------C---------------
Q 000505 1270 GVDISMIG----L------QDLRS---------RL-----SIIPQD------------------P--------------- 1292 (1458)
Q Consensus 1270 G~dI~~i~----l------~~LR~---------~i-----~iIpQd------------------p--------------- 1292 (1458)
-.+|..-+ . +++|+ +. .+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 44443211 1 24551 11 112221 1
Q ss_pred -----CCccc-cHHHhcCcCCC------CCHHHHHHH---HHHcCcHHHHHhcccccCcc-ccCCCCCCChhHHHHHHHH
Q 000505 1293 -----MLFQG-TVRTNLDPLEQ------HSDQEIWEV---INKCHLAEIVRQDQRLLDAP-VAEDGENWSVGQRQLVCLA 1356 (1458)
Q Consensus 1293 -----~LF~g-TIR~NLdp~~~------~sdeeI~~a---L~~~~L~~~i~~lp~gLdt~-v~e~G~nLSgGQrQrl~LA 1356 (1458)
+.+.+ ||.|||+.... ...+++.+. |+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13333 67777754211 012223222 2222 34432 4555668999999999999
Q ss_pred HHhc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEe------CCEEEEecCh
Q 000505 1357 RVLL---KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLD------EGKVLEYDSP 1426 (1458)
Q Consensus 1357 RALL---r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~------~G~ivE~g~p 1426 (1458)
|||+ ++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998754 4789999999999998899999996 7999999999
Q ss_pred hHHhh
Q 000505 1427 RQLLE 1431 (1458)
Q Consensus 1427 ~~Ll~ 1431 (1458)
+++.+
T Consensus 902 eel~~ 906 (1809)
T PRK00635 902 EELIH 906 (1809)
T ss_pred HHHHh
Confidence 99985
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=365.76 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=184.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHh-cce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1285 (1458)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4599999999999999999999999999999999999999999999999999887777655 569
Q ss_pred EEEccCCCCccc-cHHHhcCcCCC-C--CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-H--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~--sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
+|+||+|.+|.+ |+++|+..... . .++++.++++..++.+. ++..+ .+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA----GSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh----hhCCHHHHHHHHHHHHHHc
Confidence 999999998876 99999974321 1 23456677777776432 33444 4699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998753 47899999999999865 99999999999999999998864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=345.64 Aligned_cols=203 Identities=25% Similarity=0.350 Sum_probs=166.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|+++|++++|+..+ ...+.|+| ||++++||+++|+|+||||||||+++|.|+.+|++|++ .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996420 12468999 99999999999999999999999999999999999987 6665
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++.. .+.. +..++++..+|.+ ..+....+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 3799999998874 799999998643 2221 1223333333322 2345677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
||||+|||||+.+|+++|||||||+||+.+...+.+ +++.+. + +.|+|++||+++.+.. ||+|++|++|+|++.|+
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999888876 444443 2 7999999999999865 99999999999999999
Q ss_pred chhhhhhc
Q 000505 803 YEDLIADQ 810 (1458)
Q Consensus 803 ~~~l~~~~ 810 (1458)
++++....
T Consensus 225 ~~~v~~~p 232 (343)
T TIGR02314 225 VSEIFSHP 232 (343)
T ss_pred HHHHHcCC
Confidence 99987633
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=309.82 Aligned_cols=159 Identities=32% Similarity=0.549 Sum_probs=147.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH-HHhcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~i~ 1286 (1458)
|+++|++++|+. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999888764 4678899
Q ss_pred EEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000505 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1458)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1367 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1367 lLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998764 47899999999998865 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=320.02 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=185.5
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-HhcceE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1286 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~ 1286 (1458)
.+.++++.+|.. -.+++|+||++++||.+||+|||||||||++|++.|+|+|++|+|.++|.||..++.+. -|..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 578999999964 35999999999999999999999999999999999999999999999999999999988 467789
Q ss_pred EEccCCCCccc-cHHHhcCcCCC-------------C--C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLEQ-------------H--S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~-------------~--s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
--.|.+-+|++ |+-||+.-... + . .++-.+.|+.++|.+.. .+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcCC
Confidence 99999999988 99999853210 1 1 23345566666665543 23345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1423 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~ 1423 (1458)
.||++||-|||||..+|++|+||||.|++.++-...+.+.|++..+ +.||++|-||++.+++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999999999999998764 4899999999999988 999999999999999
Q ss_pred cChhHHhhcC
Q 000505 1424 DSPRQLLEDN 1433 (1458)
Q Consensus 1424 g~p~~Ll~~~ 1433 (1458)
|+|++..+|+
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999999775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=314.35 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=166.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..|+++|++-.|+.. ...|++ |++|++||+++|+|++||||||||++|.|..+|++|++ .++|
T Consensus 2 ~~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-Eecccchhccch
Confidence 358999999999743 678999 99999999999999999999999999999999999987 6666
Q ss_pred --------EEEEEcCCCCC-CCCcHHHHHhcCCCCC------------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 --------KKAYVPQSSWI-QTGTIRENILFGKDMR------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 --------~~ayv~Q~~~i-~~~Ti~enI~fg~~~~------------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
++||++|++-+ +..||.+|++.|+--. ++....++++- +. -|-....-.+.
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aL------er--vgi~~~A~qra 145 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDAL------ER--VGILDKAYQRA 145 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHH------HH--cCcHHHHHHHh
Confidence 36999999876 5679999999886322 22222222211 11 01111223567
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhc-cCCEEEEEeCCe
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~D~i~~l~~G~ 796 (1458)
.+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++.. +||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 7999999999999999999999999999999999999999987554332 35899999999999975 599999999999
Q ss_pred EEEcccchhhhh
Q 000505 797 IEQSGKYEDLIA 808 (1458)
Q Consensus 797 i~~~g~~~~l~~ 808 (1458)
|++.|+.+|+.+
T Consensus 226 ivfDg~~~el~~ 237 (258)
T COG3638 226 IVFDGPASELTD 237 (258)
T ss_pred EEEeCChhhhhH
Confidence 999999998644
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=367.13 Aligned_cols=211 Identities=25% Similarity=0.389 Sum_probs=180.2
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeCCCCCHHH-Hhc
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~ 1283 (1458)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ceEEEccCCCCccc-cHHHhcCcCCC------CCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPLEQ------HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~~~------~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
+++|+||+|.+|.. |+++|+..... .+. +++.++++..++.+ -++..+ .+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-------NPATPV----GNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHHHH
Confidence 89999999988875 99999974211 121 34556666665532 223334 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
++|||||+.+|+|||||||||+||+.+...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998753 46899999999999875 9999999999999999988875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=322.71 Aligned_cols=194 Identities=25% Similarity=0.396 Sum_probs=168.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 35999999999999999999999999999999999999999999999999987654 457889999
Q ss_pred EccCCCCcc-ccHHHhcCcCC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPLE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~----~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1458)
+||++.++. .|+++|+.... ...++++.++++..++.+.. |..+ ..||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-------DVPV----RQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-------hCCh----hhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996421 13456788899999987654 2232 46999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEE
Q 000505 1363 KRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVL 1415 (1458)
Q Consensus 1363 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL 1415 (1458)
|++|+|||||++||+++...+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998753 46899999999999965 4577776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=365.92 Aligned_cols=212 Identities=22% Similarity=0.343 Sum_probs=179.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHH-Hhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1458)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997765544 46789
Q ss_pred EEEccCCCCccc-cHHHhcCcCC-------CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLE-------QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-------~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1458)
+|+||+|.+|.. |+++|+.... ..+. +++.++++.+++.+ .+|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------CccCch----hhCCHHHHHHH
Confidence 999999988876 9999997421 1122 23455666666532 234444 46999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1354 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+|||||+.+|++|+|||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 46899999999999865 99999999999999999887643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=367.67 Aligned_cols=212 Identities=20% Similarity=0.300 Sum_probs=181.3
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH-hcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1285 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776653 5679
Q ss_pred EEEccCCCCccc-cHHHhcCcCC-------CC---C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLE-------QH---S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-------~~---s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1458)
+|+||+|.+|.+ |+++|+.... .. + ++++.++++.+++.+ .+|.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHH
Confidence 999999988876 9999996321 10 1 134556666666532 234444 46999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1428 (1458)
Q Consensus 1351 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~ 1428 (1458)
||++|||||+++|+||+|||||++||+.+...+.+.|++.. ++.|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998753 46899999999999875 99999999999999999988
Q ss_pred Hhh
Q 000505 1429 LLE 1431 (1458)
Q Consensus 1429 Ll~ 1431 (1458)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=341.15 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=167.0
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
+..++++|++|+|+.... ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE---NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 356999999999974300 12468999 99999999999999999999999999999999999987 5543
Q ss_pred ----------------------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcC
Q 000505 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWAD 708 (1458)
Q Consensus 660 ----------------------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~ 708 (1458)
.++||+|+| .+++.||+|||.|+.. .+.+. .++.++.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------- 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------- 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 269999998 6888899999999742 12221 222222222211
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhc-cC
Q 000505 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AA 786 (1458)
Q Consensus 709 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~ 786 (1458)
...++.+.+||||||||++|||||..+|+++||||||++||+.+...+.+ ++..+ .+++|+|+|||+++++. .|
T Consensus 168 ---~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~a 243 (320)
T PRK13631 168 ---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVA 243 (320)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 23467788999999999999999999999999999999999999888876 44443 35899999999999875 59
Q ss_pred CEEEEEeCCeEEEcccchhhhh
Q 000505 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
|+|++|++|++++.|+++++..
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999998865
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.68 Aligned_cols=197 Identities=40% Similarity=0.746 Sum_probs=173.8
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-----------
Q 000505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1458)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----------- 659 (1458)
.+.|+.|+|+.+ .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 567899999753 468999 99999999999999999999999999999999999986 5543
Q ss_pred ------EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHH
Q 000505 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 733 (1458)
.++|++|+|.+++.|++||+.++.+.+.++.+++++.+++.+.++..|.|+.+.++....+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 47999999999889999999998766666677888889888888888999989889999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCChhhHHHHHHH-HHHHHh-CCcEEEEEecccchhccCCEEEEEeCCe
Q 000505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1458)
Q Consensus 734 Al~~~~~i~lLDep~saLD~~~~~~i~~~-~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1458)
|++.+|+++||||||++||+.+...+.+. ++..+. .++|+|++||+.+++..||++++|++|+
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998877763 444433 3789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=344.17 Aligned_cols=201 Identities=27% Similarity=0.374 Sum_probs=166.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|.. ...+++ |+++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999986 7776
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++||+|++.++. .||+|||.|+... .+ ++.+++++..++.. ..+....+|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHH
Confidence 3799999998875 6999999998542 22 12223333333321 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC--CcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+|||||+.+|+++|||||||+||+.....+.+. ++.+.+ ++|+|+||||.+++. .||+|++|++|+|.+.|+++++
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999998887664 444433 799999999999875 5999999999999999999998
Q ss_pred hhhcc
Q 000505 807 IADQN 811 (1458)
Q Consensus 807 ~~~~~ 811 (1458)
.....
T Consensus 225 ~~~p~ 229 (351)
T PRK11432 225 YRQPA 229 (351)
T ss_pred HhCCC
Confidence 76433
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=372.49 Aligned_cols=223 Identities=25% Similarity=0.358 Sum_probs=182.0
Q ss_pred cEEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC----------
Q 000505 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS---------- 1274 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~---------- 1274 (1458)
-|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCHH---HHh-cceEEEccCC--CCccc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000505 1275 MIGLQ---DLR-SRLSIIPQDP--MLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339 (1458)
Q Consensus 1275 ~i~l~---~LR-~~i~iIpQdp--~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~ 1339 (1458)
+.+.. .+| ++|++|+|+| .++.. ||++|+... ...+ ++++.++|+.+++.+.- .-++..+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~~~~- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILSRYP- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHhCCC-
Confidence 22222 344 5799999999 57764 999998631 1122 23566778888774210 1123333
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhhhhh-cCEEEEEe
Q 000505 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-S-RCTVITVAHRIPTVID-NDLVLVLD 1416 (1458)
Q Consensus 1340 e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~-~~TVI~IAHrl~ti~~-~DrVlvL~ 1416 (1458)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|+
T Consensus 167 ---~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 167 ---HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4699999999999999999999999999999999999999999999864 2 7899999999999865 99999999
Q ss_pred CCEEEEecChhHHhhcCCChH
Q 000505 1417 EGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1417 ~G~ivE~g~p~~Ll~~~~s~F 1437 (1458)
+|++++.|+++++++++...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999986554333
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=328.81 Aligned_cols=197 Identities=29% Similarity=0.394 Sum_probs=160.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 468899999853 358999 99999999999999999999999999999999999986 6654
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC----CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~----~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++|++|++.++. .|++||+.++.. .+.. +.+++++.+++.. .......+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 2799999998776 499999988632 1221 2233333333321 224556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
|||||+||||+..+|+++||||||++||+.+...+.+ .+..+. .++|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 9999999999999999999999999999999887766 454443 37999999999998865 9999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
+++++..
T Consensus 220 ~~~~~~~ 226 (235)
T cd03261 220 TPEELRA 226 (235)
T ss_pred CHHHHcC
Confidence 9888754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=310.75 Aligned_cols=204 Identities=26% Similarity=0.402 Sum_probs=168.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1458)
.++++|.++.|+... ...+.+++ ||++.+||..+|+|++|||||||.++|+|..+|++|++ .++|+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 578999999998651 12268899 99999999999999999999999999999999999997 78773
Q ss_pred ------EEEEcCCCCC---CCCcHHHHHhcCCCC-----CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 661 ------KAYVPQSSWI---QTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 661 ------~ayv~Q~~~i---~~~Ti~enI~fg~~~-----~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
+-+|+|+|.- +..||++-|.-+... .+.+..++++..+|.+.. ...+...|||||+
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHH
Confidence 6899999863 456898877543221 233445556666655432 3467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1458)
|||||||||..+|+++|||||||+||+.+...|++-+ ..+. ++-|.|+||||+..+.+ ||||+||++|+|++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL-~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL-LELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH-HHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999998744 3333 36799999999999987 999999999999999999
Q ss_pred hhhhhh
Q 000505 804 EDLIAD 809 (1458)
Q Consensus 804 ~~l~~~ 809 (1458)
+++...
T Consensus 227 ~~l~~~ 232 (252)
T COG1124 227 EELLSH 232 (252)
T ss_pred hhhhcC
Confidence 988763
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=362.25 Aligned_cols=212 Identities=18% Similarity=0.219 Sum_probs=183.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 34999999999999999999999999999999999999999999999999887777777888999
Q ss_pred EEccCCCC--c-------cccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1287 IIPQDPML--F-------QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1287 iIpQdp~L--F-------~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
++||+|.+ + .-|+++|+... ...++++.++++..++.+.. |.++ ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALL-------DRRF----KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhh-------hCCc----ccCCHHHHHHHHHHH
Confidence 99999753 2 35899998642 12345678888888886543 3333 369999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998864 36899999999999876 999999999999999999998753
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=343.36 Aligned_cols=201 Identities=30% Similarity=0.377 Sum_probs=167.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|..+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999997 7776
Q ss_pred --EEEEEcCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++||+|++-++ ..||+|||.|+... +. ++.+++++..+|.+ ....+..+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHH
Confidence 379999999887 47999999998532 21 22333344333322 23466789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+|||||+.+|+++|||||||+||+.+..++.+. ++.+. .+.|+|+||||++++. .||+|++|++|++++.|+++++
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999998888664 44433 2789999999999875 4999999999999999999999
Q ss_pred hhhcc
Q 000505 807 IADQN 811 (1458)
Q Consensus 807 ~~~~~ 811 (1458)
.+...
T Consensus 223 ~~~p~ 227 (353)
T TIGR03265 223 YRHPA 227 (353)
T ss_pred HhCCC
Confidence 87443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=335.88 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=166.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|+++|++|+|+.... ...+.+++ ||+|++||+++|+|+||||||||+++|.|+++|++|++ .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 689999999974300 01358999 99999999999999999999999999999999999986 6765
Q ss_pred -------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 -------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++||+|+| .++..|+.||+.|+.. ... .+++++++..+|..++ .+....+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCH
Confidence 269999998 6778899999999753 111 2344445444443221 2456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1458)
|||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|||++||+++++. .||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999887765 455443 4899999999999986 59999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9998865
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=343.44 Aligned_cols=201 Identities=28% Similarity=0.386 Sum_probs=166.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1458)
..++++|++++|.. .+.+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|.
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45899999999963 357889 99999999999999999999999999999999999987 77764
Q ss_pred ----EEEEcCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 661 ----~ayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
++||+|++.++ ..||+|||.|+... .+ ++.+++++..++... ...+..+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 79999999886 56999999998542 21 123334444444322 234567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchh
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~ 805 (1458)
|+|||||+.+|+++|||||||+||++....+.+. +..+. .+.|+|+||||.+++. .||+|++|++|+|.+.|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999998877654 44443 3799999999999865 599999999999999999999
Q ss_pred hhhhc
Q 000505 806 LIADQ 810 (1458)
Q Consensus 806 l~~~~ 810 (1458)
+....
T Consensus 232 i~~~p 236 (375)
T PRK09452 232 IYEEP 236 (375)
T ss_pred HHhCc
Confidence 87643
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=362.33 Aligned_cols=220 Identities=24% Similarity=0.399 Sum_probs=182.4
Q ss_pred cEEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCCHH
Q 000505 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~l~ 1279 (1458)
.|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23699999999999999999999999999999999999986 799999999999877654
Q ss_pred H---Hh-cceEEEccCCC--Ccc-ccHHHhcCc----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1280 D---LR-SRLSIIPQDPM--LFQ-GTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1280 ~---LR-~~i~iIpQdp~--LF~-gTIR~NLdp----~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
+ .| ++++|+||+|. ++. -|+++|+.. ....+ .+++.++++.+++.+... -+|..+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~----~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----RLTDYP----HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH----HHhhCC----cc
Confidence 3 34 57999999985 444 489998752 11122 245677888888754211 123333 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1421 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~iv 1421 (1458)
||||||||++|||||+.+|++|+||||||+||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998853 37899999999999865 9999999999999
Q ss_pred EecChhHHhhcCC
Q 000505 1422 EYDSPRQLLEDNS 1434 (1458)
Q Consensus 1422 E~g~p~~Ll~~~~ 1434 (1458)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=335.52 Aligned_cols=205 Identities=25% Similarity=0.375 Sum_probs=166.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.... ...+.|++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974300 01468999 99999999999999999999999999999999999986 6655
Q ss_pred ------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 ------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++||+|+| .+++.|++|||.|+.. .+.+ +.+++++.++|.. .+..+....+||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHH
Confidence 369999998 5678899999998742 2222 2334444444430 12245667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcc
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1458)
||||++|||||+.+|+++||||||++||+.+...+.+ ++..+. .++|||+|||+++++. .||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999888765 455543 3799999999999985 59999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 9988765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=335.70 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=166.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.... ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999964300 11468999 99999999999999999999999999999999999987 6665
Q ss_pred -------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 -------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++||+|+| .+++.||+|||.|+.. .+. ++.+++++.++|..++ .+.+..+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCH
Confidence 269999998 5777899999998742 122 2344455555554322 2356678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1458)
|||||++|||||+.+|+++||||||++||+.+...+.+ +++.+. .+.|||++||+++++.. ||+|++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999887766 455443 37999999999999864 999999999999999
Q ss_pred ccchhhhh
Q 000505 801 GKYEDLIA 808 (1458)
Q Consensus 801 g~~~~l~~ 808 (1458)
|+.+++.+
T Consensus 228 g~~~~~~~ 235 (290)
T PRK13634 228 GTPREIFA 235 (290)
T ss_pred CCHHHHhc
Confidence 99888765
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.52 Aligned_cols=197 Identities=32% Similarity=0.439 Sum_probs=161.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 368999 99999999999999999999999999999999999986 6665
Q ss_pred -EEEEEcCCCCCCC-CcHHHHHhcCCCC-------CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~enI~fg~~~-------~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|+|.++. .|++||+.++... +.. +.++.++..++. ........+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHH
Confidence 3799999998874 6999999986432 111 122223333332 123456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1458)
||++||||++.+|+++||||||++||+++.+.+.+ ++..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99999999999999999999999999999877765 555543 3 7899999999998765 999999999999999998
Q ss_pred hhhhh
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~~l~~ 808 (1458)
+++.+
T Consensus 222 ~~~~~ 226 (239)
T cd03296 222 DEVYD 226 (239)
T ss_pred HHHhc
Confidence 88764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=318.07 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=164.3
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999875 34567899999
Q ss_pred EccCCCCc-cccHHHhcCcC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1288 IPQDPMLF-QGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
+||++.++ ..|+++|+... ....++.+.++++..++.+. .|.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999887 46999998632 11233456777777766442 23333 3699999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEE
Q 000505 1365 ILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVL 1413 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVl 1413 (1458)
+|+|||||++||..+.+.+.+.|++.. +++|+|++||+...+.+||.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 999999999999999999999999753 5789999999999999898644
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=319.86 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=167.1
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999998752 4466899
Q ss_pred EEccCCCCccc-cHHHhcCcC----CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL----EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~----~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1458)
|+||+|.+|.+ |+++|+... +...++.+.++++..++.+. ++..+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999998532 22234455677777776433 34444 4699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDE 1417 (1458)
Q Consensus 1362 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~ 1417 (1458)
+|++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998653 46899999999999865 899999875
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.16 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=163.8
Q ss_pred EEEEeeeEEeCC----C-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEc--C--eeCCCCCH
Q 000505 1208 IELENLLVQYNP----T-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID--G--VDISMIGL 1278 (1458)
Q Consensus 1208 I~~~nvs~~Y~~----~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID--G--~dI~~i~l 1278 (1458)
|+++|++++|+. + .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hcceEEEccCCCCccc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000505 1279 QD---L-RSRLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1458)
Q Consensus 1279 ~~---L-R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1458)
.. + +++++|+||+|.+|.. |+++|+... .... ++++.++++..++.+... +. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL----PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC----CcccCC
Confidence 43 3 4679999999988875 999998531 1121 345666777777654221 22 245799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEE
Q 000505 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVL 1415 (1458)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~-~~DrVlvL 1415 (1458)
+|||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+. -||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=317.28 Aligned_cols=197 Identities=24% Similarity=0.421 Sum_probs=172.4
Q ss_pred cEEEEeeeEEeCCCC-------CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHH
Q 000505 1207 KIELENLLVQYNPTL-------PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1279 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~-------~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1279 (1458)
-++++|++..|.... -.+++||||+|++||.+||||.|||||||+-++|.|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 26899999999999999999999999999999999999999999999999987765
Q ss_pred HHhcceEEEccCCCCccccHHHhcCcCCCCCHHHHHHHHHHcCcHHH-HHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI-VRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
.+..++++.+.|+++|+.+. ..+-| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 22345678999999998763 33323 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s 1435 (1458)
|.-+|+++|+|||||+||....++|.+.+++.. .+-|.+.|||+++.+.. ||||.||..|+|||.|+.+++++++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887643 47899999999999987 999999999999999999999999988
Q ss_pred hHHHHHHH
Q 000505 1436 SFSKLVAE 1443 (1458)
Q Consensus 1436 ~F~~l~~~ 1443 (1458)
.|.+..-+
T Consensus 204 pYTk~Ll~ 211 (268)
T COG4608 204 PYTKALLS 211 (268)
T ss_pred HHHHHHHH
Confidence 88766543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=323.96 Aligned_cols=194 Identities=28% Similarity=0.409 Sum_probs=158.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCc-----cCCCCcEEEECC-----
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~-----~~~~G~~i~~~g----- 659 (1458)
++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.+ +|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468899999853 368999 9999999999999999999999999999999 8999986 6655
Q ss_pred ----------EEEEEcCCCCCCCCcHHHHHhcCCCC----C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCC--CC
Q 000505 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER--GI 719 (1458)
Q Consensus 660 ----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~--g~ 719 (1458)
.++|++|++.+++.|++||+.++... . +++.+++++.+++.+.. ..+ +.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~ 140 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHAL 140 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcc
Confidence 36999999988888999999886421 1 11223334444443222 222 57
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
+||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 899999999999999999999999999999999999887765 45555444899999999998765 9999999999999
Q ss_pred Ecccchh
Q 000505 799 QSGKYED 805 (1458)
Q Consensus 799 ~~g~~~~ 805 (1458)
+.|+.++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=343.77 Aligned_cols=199 Identities=27% Similarity=0.395 Sum_probs=165.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|.+++|+. ...+++ ||++++|++++|+|||||||||||++|+|.++|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 4789999999963 357899 99999999999999999999999999999999999987 6765
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.++. .||+|||.|+... +. ++.+++++.+++.. ..+....+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHH
Confidence 3799999998875 6999999987532 21 23344444444432 23355678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+|||||+.+|+++||||||++||+.....+.+. ++.+. + ++|+|+||||++++.. ||+|++|++|++.+.|+++++
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999998877664 44443 3 7899999999998765 999999999999999999998
Q ss_pred hhh
Q 000505 807 IAD 809 (1458)
Q Consensus 807 ~~~ 809 (1458)
...
T Consensus 222 ~~~ 224 (369)
T PRK11000 222 YHY 224 (369)
T ss_pred HhC
Confidence 763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=360.19 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=175.8
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH-HHHhcce
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1285 (1458)
.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543 3468899
Q ss_pred EEEccCCCCccc-cHHHhcCcCC-----C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLE-----Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-----~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1458)
+|+||+|.+|.+ |+++|+.... . .. ++++.++++.+++.+ .++..+ .+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPL----KYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCch----hhCCHHHHHHHH
Confidence 999999998876 9999996421 1 11 234566677766532 223333 469999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1355 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p 1426 (1458)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998753 46899999999999866 999999999999876654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=326.07 Aligned_cols=202 Identities=27% Similarity=0.393 Sum_probs=165.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCC-----CCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++|+ +|++ .++|
T Consensus 1 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGE--------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECC--------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEcc
Confidence 3688999999963 257899 9999999999999999999999999999999988 9986 5544
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|+++++..|++||+.++... .. ++.+++++..++.++++ ...+....+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 144 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALG 144 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCccc
Confidence 37999999998889999999875321 11 12233344444432221 224566789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877765 56655556899999999998865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 224 ~~~~~~~~~ 232 (247)
T TIGR00972 224 YGPTEQIFT 232 (247)
T ss_pred eCCHHHHHh
Confidence 999888765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=340.88 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=166.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCC--CcEEEECC------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~--G~~i~~~g------ 659 (1458)
..++++|++++|.. ...+++ ||++++|++++|+|||||||||||++|+|+.+|++ |++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 35899999999963 357999 99999999999999999999999999999999999 986 7766
Q ss_pred -----EEEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++||+|++.++. .||+|||.|+... .. .+.+++++..+|.+. ...+..+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHH
Confidence 3799999998875 5999999987532 21 233344444444322 3456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC--CcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1458)
|||+|||||..+|+++|||||||+||+....++.+.+..-..+ +.|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988887654332223 6899999999999765 999999999999999999
Q ss_pred hhhhhhc
Q 000505 804 EDLIADQ 810 (1458)
Q Consensus 804 ~~l~~~~ 810 (1458)
+++....
T Consensus 224 ~~~~~~p 230 (362)
T TIGR03258 224 QALYDAP 230 (362)
T ss_pred HHHHhCc
Confidence 9997643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.18 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=160.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 367899999863 358899 99999999999999999999999999999999999986 6655
Q ss_pred ----EEEEEcCCCCCCCC-cHHHHHhcCCCCC-------------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCC
Q 000505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~enI~fg~~~~-------------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~L 721 (1458)
.++|++|++.++.. |++||+.++.... ....++ ...+-++.+ |-....+....+|
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~L 144 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGEL 144 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhC
Confidence 27999999887664 9999998864211 111110 011112222 2122345677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
|||||||++||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++.. ||+|++|++|++.+
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999887776 454443 68999999999999865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 998887754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.34 Aligned_cols=203 Identities=24% Similarity=0.360 Sum_probs=165.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1458)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999864 578986 5554
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCCC----C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~ 719 (1458)
.++|++|++.++..|++||+.++... . +++.++.++.+++.+.+. +..+....
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 37999999988888999999986321 1 122333444444432221 23456778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
+|||||||||+||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998777765 55555567899999999999865 9999999999999
Q ss_pred Ecccchhhhh
Q 000505 799 QSGKYEDLIA 808 (1458)
Q Consensus 799 ~~g~~~~l~~ 808 (1458)
+.|+.+++..
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999888765
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.03 Aligned_cols=193 Identities=26% Similarity=0.362 Sum_probs=166.9
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 2 28889999
Q ss_pred EccCCCCc-cccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1288 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+||++.++ ..|+++|+... ....++++.++++..++.+... .++ ..||+|||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-------LPF----GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-------CCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 57999998632 2234567889999999876432 222 369999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEEEEeC
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHrl~ti~~~DrVlvL~~ 1417 (1458)
++|+|||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999874 357899999999999887 99988754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=333.77 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=164.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.|+++|++++|+.... ...+.+++ ||+|++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceeccccccc
Confidence 3789999999974300 11358999 99999999999999999999999999999999999986 5532
Q ss_pred ----------------------------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhh
Q 000505 660 ----------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQD 702 (1458)
Q Consensus 660 ----------------------------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~d 702 (1458)
.++||+|+| .++..||+|||.|+.. .++ ++.+++++.++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 269999986 4677899999999753 222 223334444444321
Q ss_pred HHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccc
Q 000505 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE 781 (1458)
Q Consensus 703 l~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~ 781 (1458)
..+....+||||||||++|||||+.+|+++||||||++||+.....+.+ .+..+ ..++|||+||||++
T Consensus 158 ----------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 158 ----------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHH
Confidence 1345678999999999999999999999999999999999998777765 44444 34899999999999
Q ss_pred hhc-cCCEEEEEeCCeEEEcccchhhhh
Q 000505 782 FLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 782 ~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
++. .||+|++|++|++++.|+.+++..
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 875 599999999999999999988765
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=315.04 Aligned_cols=192 Identities=21% Similarity=0.326 Sum_probs=164.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... .+.|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998765 457789999
Q ss_pred EccCCCCcc-ccHHHhcCcCC---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000505 1288 IPQDPMLFQ-GTVRTNLDPLE---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1458)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1458)
+||++.+|. .|+++|+.... ...++++.++++..++.+.. +..+ .+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------DLPA----AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-------cCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999985321 11244688899999987654 2333 469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEEE
Q 000505 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLV 1414 (1458)
Q Consensus 1364 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHrl~ti~~~DrVlv 1414 (1458)
++|+|||||++||..+.+.+.+.|++. .++.|+|+++|+... ..||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-LVEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-ccceEEee
Confidence 999999999999999999999999875 357899999999854 34677765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=339.14 Aligned_cols=199 Identities=34% Similarity=0.472 Sum_probs=164.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+++|++|++ .++|
T Consensus 2 ~L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 357899 99999999999999999999999999999999999986 7766
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCCC-------CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~~-------~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++||+|++.++. .|++|||.|+... +. ++.+++++..++.+ ....+..+|||||
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq 141 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQ 141 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 3799999998875 6999999997532 11 12223333333321 2345677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
||||+|||||+.+|+++||||||++||+.+...+.+. ++.+. + ++|+|+||||++++.. ||+|++|++|++++.|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999998888764 44443 3 7899999999999765 99999999999999999
Q ss_pred chhhhhh
Q 000505 803 YEDLIAD 809 (1458)
Q Consensus 803 ~~~l~~~ 809 (1458)
++++...
T Consensus 221 ~~~i~~~ 227 (353)
T PRK10851 221 PDQVWRE 227 (353)
T ss_pred HHHHHhC
Confidence 9998763
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=319.54 Aligned_cols=190 Identities=32% Similarity=0.427 Sum_probs=155.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 467899999863 368999 99999999999999999999999999999999999987 6665
Q ss_pred -EEEEEcCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -~~ayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++ +.|++||+.++... +. ++.++.++.+++.+ .......+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-----------LLNRYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 379999998776 46999999876431 21 12333444444432 234556789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
||||+..+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELRE-ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999887765 455443 37999999999999765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=322.12 Aligned_cols=199 Identities=27% Similarity=0.397 Sum_probs=165.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999853 358899 99999999999999999999999999999999999987 6665
Q ss_pred ----EEEEEcCCCCCCCCcHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~enI~fg~~~~---~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1458)
.++|++|++.++..|++||+.++.... ..+..+.++.+++..+. ......+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHH
Confidence 379999999988889999999864322 23334455555543221 2346778999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++.. ||+|++|++|++++.|+.+++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999998777665 455443 37999999999999875 99999999999999999888765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=389.27 Aligned_cols=215 Identities=22% Similarity=0.355 Sum_probs=188.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceE
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1458)
.|+++|++++|+++...+++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. ...+.|++++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996434569999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEccCCCCccc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1458)
++||++.+|+. |++|||..+ ...+ ++++.+.++.++|.+.. |..+ .+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-------~~~~----~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-------NEEA----QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHHHHHHHHH
Confidence 99999999975 999999642 1122 24567778888775432 3333 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1359 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~ 1433 (1458)
|+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++.+|.++-
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999998778999999999999865 9999999999999999999997643
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=314.63 Aligned_cols=188 Identities=26% Similarity=0.404 Sum_probs=159.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+.. ..+.+++ |+++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 458999999999742 2468999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
.++|++|+|.++++|++||+.+..+++.+. +.+.+. ++++..+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 479999999998899999998765443322 222211 346778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEccc
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1458)
++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999998777655 5555556899999999999987799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=331.02 Aligned_cols=201 Identities=28% Similarity=0.427 Sum_probs=166.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.. ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48899999999743 12458999 99999999999999999999999999999999999986 6766
Q ss_pred ----EEEEEcCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 ----~~ayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|+|. ++..||+|||.|+.. .++ ++.+++++..+|... ......+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF-----------KEREPARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHH
Confidence 3699999984 567799999998743 222 233444555555322 2345679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhccCCEEEEEeCCeEEEcccch
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||++||||++.+|+++||||||++||+.+.+.+.+ ++..+. + ++|+|++||+++.+..||+|++|++|+++..|+.+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998877765 455543 3 89999999999998779999999999999999988
Q ss_pred hhhh
Q 000505 805 DLIA 808 (1458)
Q Consensus 805 ~l~~ 808 (1458)
++..
T Consensus 226 ~~~~ 229 (279)
T PRK13650 226 ELFS 229 (279)
T ss_pred HHHc
Confidence 8765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=298.44 Aligned_cols=213 Identities=28% Similarity=0.443 Sum_probs=184.5
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+.+|++++-.. ..+|+|+||+++|||.+||+||||||||||+++|.|...|++|++.++|.++++.+..++-++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 678899877643 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC-ccccHHHhcC----cCC---CCCHHH--HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1288 IPQDPML-FQGTVRTNLD----PLE---QHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1288 IpQdp~L-F~gTIR~NLd----p~~---~~sdee--I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
.||+..+ |.-|++|-+. |.+ +..+++ ..+++.++.+..+-.+. . ..|||||+||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y------~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----Y------RTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----h------hhcCchHHHHHHHHH
Confidence 9999865 8889999875 442 222444 67889999887664321 1 359999999999999
Q ss_pred Hhcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcCEEEEEeCCEEEEecChhHH
Q 000505 1358 VLLK------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQL 1429 (1458)
Q Consensus 1358 ALLr------~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti-~~~DrVlvL~~G~ivE~g~p~~L 1429 (1458)
+|.+ .+++|+||||||+||..-...+.++.|+.. .++.|++|=|+++.. +.||||++|.+||++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9975 346999999999999999999999999865 568999999999986 55999999999999999999999
Q ss_pred hhcC
Q 000505 1430 LEDN 1433 (1458)
Q Consensus 1430 l~~~ 1433 (1458)
+..+
T Consensus 229 lt~E 232 (259)
T COG4559 229 LTDE 232 (259)
T ss_pred cCHH
Confidence 8643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=314.43 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=181.2
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHh----cceEEEccCCCCccc-c
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR----SRLSIIPQDPMLFQG-T 1298 (1458)
Q Consensus 1224 vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR----~~i~iIpQdp~LF~g-T 1298 (1458)
-++|+||+|+.||+..|.|-||||||||+.++-|++||++|+|++||.||..++..+|| +++++|.|.--||+. |
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999999999999988764 589999999999976 9
Q ss_pred HHHhcCcCCC---CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCc
Q 000505 1299 VRTNLDPLEQ---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371 (1458)
Q Consensus 1299 IR~NLdp~~~---~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEa 1371 (1458)
|-+|..+.-+ .+ .+...++|+.+||.++-.+.|+ .||||++||+.|||||..+|+||++|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999865421 22 3446789999999999877764 5899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000505 1372 TASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1372 TsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~~~s~F 1437 (1458)
.|+|||--...+|+-|.+.. -++||++|||+++.... -|||..|++|+|+..|+|+|++.+|.-.|
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 99999999999999887643 36899999999998755 99999999999999999999998876544
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=331.11 Aligned_cols=197 Identities=29% Similarity=0.420 Sum_probs=163.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.. .+.++| ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 58899999999632 358999 99999999999999999999999999999999999987 6766
Q ss_pred ----EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 ----~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|+| .++..|++||+.|+.. .+. ++++++++.+++.+. ......+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF-----------RDKPPYHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCChhhCCHHHH
Confidence 379999998 5678899999998743 221 234445555555322 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccch
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~ 804 (1458)
||++||||+..+|+++||||||++||+.+...+.+ ++..+ .+++|+|++||+++++. .||+|++|++|++++.|+.+
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999888765 45444 34899999999999985 59999999999999999986
Q ss_pred hh
Q 000505 805 DL 806 (1458)
Q Consensus 805 ~l 806 (1458)
++
T Consensus 224 ~~ 225 (274)
T PRK13647 224 LL 225 (274)
T ss_pred Hh
Confidence 54
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=362.70 Aligned_cols=199 Identities=28% Similarity=0.374 Sum_probs=170.3
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEEcCeeCCCCCHHHHhcceEEEccCCCCccc-c
Q 000505 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-T 1298 (1458)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~--~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-T 1298 (1458)
..+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|.. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 899999999874 2456789999999999965 9
Q ss_pred HHHhcCcC------CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCC-CCCCChhHHHHHHHHHHhccCCCEEE
Q 000505 1299 VRTNLDPL------EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAED-GENWSVGQRQLVCLARVLLKKKRILV 1367 (1458)
Q Consensus 1299 IR~NLdp~------~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~-G~nLSgGQrQrl~LARALLr~~~ILl 1367 (1458)
+|||+... ...++++ +.+.++..+|.+ ..|+.+++. ...||||||||++|||||+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999631 1234433 445556665543 457878653 57899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeCCEEEEecChhHHhh
Q 000505 1368 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~t-i-~~~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
|||||++||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999864 58999999999984 4 5599999999999999999999874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=324.25 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=167.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc---CCCCcEEEECC------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~---~~~G~~i~~~g------ 659 (1458)
.|+++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 368999 99999999999999999999999999999974 689986 6665
Q ss_pred -------EEEEEcCCCCCCCCcHHHHHhcCCCC---------CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 -------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 -------~~ayv~Q~~~i~~~Ti~enI~fg~~~---------~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++|++|++.++..|++||+.++... .+++.+++++.+++.+.+.. ...+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 37999999999889999999876321 11233455566666443322 23456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
|||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999998777655 56555568999999999999865 99999999999999999
Q ss_pred chhhhh
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~~l~~ 808 (1458)
.+++..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 888765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=358.33 Aligned_cols=208 Identities=20% Similarity=0.340 Sum_probs=174.3
Q ss_pred EEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCH-HHHhcceEEE
Q 000505 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRLSII 1288 (1458)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i~iI 1288 (1458)
++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 359999999999999999999999999999999999999999999999999976654 3467889999
Q ss_pred ccCCCCccc-cHHHhcCcCC----C--CCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1289 PQDPMLFQG-TVRTNLDPLE----Q--HSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1289 pQdp~LF~g-TIR~NLdp~~----~--~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
||+|.+|.. |+++|+.... . .+.+ ++.++++.+++. ........+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 999987765 9999996321 1 1222 344455555442 2222334579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998753 46899999999999865 9999999999999999988864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=324.88 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=165.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1458)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36899999999963 357899 999999999999999999999999999999987 48886 5544
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~ 719 (1458)
.++|++|++.+++.|++|||.++... +.. +.++.++.+++...+. .....++.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcc
Confidence 37999999998889999999987421 111 2223333333322111 12345678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
+||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887765 55555567999999999999865 9999999999999
Q ss_pred Ecccchhhhh
Q 000505 799 QSGKYEDLIA 808 (1458)
Q Consensus 799 ~~g~~~~l~~ 808 (1458)
+.|+.+++..
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999988865
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.79 Aligned_cols=188 Identities=24% Similarity=0.399 Sum_probs=153.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.. ..+.+++ |+++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6789999999642 2368999 99999999999999999999999999999999999986 6665
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++.. .. +++.+++++.+++.+. ......+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 3699999998765 699999987632 11 1233444444444322 234556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999888776 45444 347999999999999875 999999999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=331.62 Aligned_cols=204 Identities=24% Similarity=0.422 Sum_probs=164.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+... ....+.|++ ||+|++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999996430 012468999 99999999999999999999999999999999999986 6655
Q ss_pred --------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCHHHH----HHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~~~y----~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++||+|+| .++..|++|||.|+.. ++.+.. ++.++.++|..+ ..+..+.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 369999997 5677899999998742 232222 223333333211 2345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeCCeEEE
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1458)
||||||++||||++.+|+++||||||++||+.+...+.+ .++.+. .++|+|+|||+++++. .||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999887765 455443 4799999999999986 599999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=319.37 Aligned_cols=203 Identities=30% Similarity=0.443 Sum_probs=169.3
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
...++++|++++|+.. ...+.+++ |+++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 3468999999999753 22468999 99999999999999999999999999999999999986 6665
Q ss_pred ------EEEEEcCCCCCCCCcHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHH
Q 000505 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~~Ti~enI~fg~~~~-~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1458)
.++|++|++.++..|++||+.++.... ...+.+..+...+.+-++.++.|..+..+++..+|||||||||+||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 379999999988899999999875422 2222223333445556777776766778888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeE
Q 000505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1458)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1458)
||++++|+++||||||++||+++...+.+ .+..+.+++|+|++||+++++..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999877765 55555567899999999999877999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=320.16 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=158.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ |+++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 468899999853 358899 99999999999999999999999999999999999986 6665
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.++. .|++||+.++.. .+. ++.++.++.+++... ......+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHH
Confidence 3799999987765 599999987532 111 223344444444321 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+||||++.+|+++||||||++||+++...+.+ .+..+. + ++|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE-YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999887765 444443 3 7899999999999875 999999999999988876653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=319.81 Aligned_cols=196 Identities=32% Similarity=0.440 Sum_probs=158.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------EE
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------~~ 661 (1458)
++++|.+++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46889999996420 11468999 99999999999999999999999999999999999987 6766 47
Q ss_pred EEEcCCCCCCC-CcHHHHHhcCCCC---C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHH
Q 000505 662 AYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1458)
Q Consensus 662 ayv~Q~~~i~~-~Ti~enI~fg~~~---~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 733 (1458)
+|++|++.++. .|++||+.++... . .++.++.++..++.+. ......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999998776 7999999876321 1 1223334444444322 23456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-h-CCcEEEEEecccchhcc-CCEEEEEe--CCeEEEcccc
Q 000505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMK--DGKIEQSGKY 803 (1458)
Q Consensus 734 Al~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~--~G~i~~~g~~ 803 (1458)
|++.+|+++||||||++||+.+...+++ ++..+ . .++|+|++||+++++.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999888876 44444 3 37999999999998764 99999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=356.69 Aligned_cols=211 Identities=23% Similarity=0.374 Sum_probs=177.4
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeCCCCCHHH-Hhcc
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRSR 1284 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~~ 1284 (1458)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred eEEEccCCCCccc-cHHHhcCcCCC-------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPLEQ-------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~-------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
++|+||+|.+|.. |+++|+..... .. ++++.++++..++.+.. .+.++ ..||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHHH
Confidence 9999999988876 99999863211 11 12355566666553211 12333 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
++|||||+++|+||+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999998753 46899999999999876 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=316.51 Aligned_cols=186 Identities=32% Similarity=0.473 Sum_probs=153.8
Q ss_pred EeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------EE
Q 000505 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (1458)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----------~~ 661 (1458)
++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++| .+
T Consensus 2 ~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcce
Confidence 57888888531 357999 99999999999999999999999999999999999987 6766 47
Q ss_pred EEEcCCC--CCCCCcHHHHHhcCCCC---CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 000505 662 AYVPQSS--WIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1458)
Q Consensus 662 ayv~Q~~--~i~~~Ti~enI~fg~~~---~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1458)
+|++|+| .++..|++||+.++.+. ++++.+++++.+++.+. ......+||||||||++||||++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHH
Confidence 9999997 45678999999986432 22345556666655432 23455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 737 ~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999777765 55554 457999999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=294.94 Aligned_cols=502 Identities=16% Similarity=0.158 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDH-SSYH-YGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1458)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~~-~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1458)
.-.++|.+++.++....+.+.. ..++-.++-.+-+++-+.... ...- .-..+...++++..+. +.--.+..+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~---g~~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is---~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLAS---GALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS---QLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3457778888777655544433 334445554444555332220 0010 0111222223333322 222233344
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000505 344 RIGIRVRSALTVLIYKRSMAIKFAGP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1458)
Q Consensus 344 r~g~~iR~~L~~~Iy~K~L~ls~~~~-~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1458)
....++|.-++..|..--+. .-++ +++.+..-++.|+..|.-.+..+.++-.+.+-+..++..|++.=+ ...+..+
T Consensus 78 ~~I~klr~~~~~kil~tple--rier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l~v 154 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLE--RIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLLTV 154 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHH--HHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 44556666665555432221 1122 778899999999999997777777776666656666667776555 7777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKL-LRLREIERDSLKKYLYTCS 499 (1458)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE~--~f~~~I-~~~R~~El~~l~k~~~~~a 499 (1458)
+.+++.+..++...++..++..+..+..|+-.+..+.++.|-|-+|+..=.. .+.+.+ ...++.+-.. .+...
T Consensus 155 V~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~----~~~n~ 230 (546)
T COG4615 155 VWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI----IRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh----hhhhH
Confidence 8888888888888888888888888888999999999999999999876322 122221 1122222111 11111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000505 500 AI-AFLFWASPTLVSVITFGVCILLKTPLTS-GAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1458)
Q Consensus 500 ~~-~~~~~~~p~~v~~~tF~~~~~~~~~L~~-~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1458)
+. ....|..-.+.+++....|+...-...+ ..+.|....+-.++.|+.+.-..++.+.+|.++++||.++=..|+..+
T Consensus 231 f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~ 310 (546)
T COG4615 231 FHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc
Confidence 11 2234444444444433333322222222 234444445556899999999999999999999999999877665333
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEE
Q 000505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1458)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1458)
.....+.+ +-..++++|+.|+|+++ .+.+.. |++|++||+|.|+|.||||||||++.++|+++|++|++ .
T Consensus 311 ~~~~q~~p-~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I-~ 381 (546)
T COG4615 311 FPRPQAFP-DWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-L 381 (546)
T ss_pred CCCCCcCC-cccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce-e
Confidence 22212221 23569999999999875 366666 99999999999999999999999999999999999996 8
Q ss_pred ECCEE-------------EEEcCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 657 VHGKK-------------AYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 657 ~~g~~-------------ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
++|+- +-|+-+-|+|..+ +-++. ..++..++-++.-.+.+.. .+.+|..+ ...||
T Consensus 382 ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLS 450 (546)
T COG4615 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLS 450 (546)
T ss_pred ECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----ccccc
Confidence 88853 2233333443221 11111 2233333333333333222 12233222 24699
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCeEEEc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~ 800 (1458)
-|||.|+++--|+..+.|||+|||=-+-=||+-++..++..+-.+. .||||+.||||-.+...|||++.|++|++++.
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999998888877664443 49999999999999999999999999999864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=322.98 Aligned_cols=197 Identities=27% Similarity=0.381 Sum_probs=159.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999998622 358999 99999999999999999999999999999999999986 6655
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCCC------------C---HHHHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~~------------~---~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
.++|++|++.++. .|++||+.++... . .++.+++++.+++. ......
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCC
Confidence 2699999988765 6999999876321 0 11222333333332 123456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeC
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~ 794 (1458)
..+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++. .||+|++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 78999999999999999999999999999999999998777765 455443 3789999999999986 4999999999
Q ss_pred CeEEEcccchhhh
Q 000505 795 GKIEQSGKYEDLI 807 (1458)
Q Consensus 795 G~i~~~g~~~~l~ 807 (1458)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (243)
T TIGR02315 222 GEIVFDGAPSELD 234 (243)
T ss_pred CEEEecCCHHHhC
Confidence 9999999988763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=318.13 Aligned_cols=197 Identities=25% Similarity=0.438 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1458)
++++|+++.|+.. ..+.+++ |+++++|++++|+||||||||||+++|+|.++|++|++ .++|.
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4688999998642 2468999 99999999999999999999999999999999999987 66653
Q ss_pred ---EEEEcCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 661 ---KAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 661 ---~ayv~Q~~~i~-~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
++|++|++.++ ..|++||+.++.. ... ++.+++++.+++.+. .+....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHH
Confidence 69999998876 6799999987532 111 233444555544322 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1458)
+||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999887765 55555567999999999999875 999999999999999887664
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=322.55 Aligned_cols=197 Identities=27% Similarity=0.388 Sum_probs=159.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4678999998641 358999 99999999999999999999999999999999999986 6654
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCCC------------CHH---HHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQS---FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~~------------~~~---~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
.++|++|++.++. .|++||+.++... .+. +.++.++..++. ...+..
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCC
Confidence 3799999987765 7999999875321 111 112222222221 234567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeC
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~ 794 (1458)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+. .||+|++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 78999999999999999999999999999999999999887766 454443 3799999999999987 5999999999
Q ss_pred CeEEEcccchhhh
Q 000505 795 GKIEQSGKYEDLI 807 (1458)
Q Consensus 795 G~i~~~g~~~~l~ 807 (1458)
|++++.|+++++.
T Consensus 221 G~i~~~~~~~~~~ 233 (241)
T cd03256 221 GRIVFDGPPAELT 233 (241)
T ss_pred CEEEeecCHHHhh
Confidence 9999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=338.74 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=166.7
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------ 660 (1458)
...++++|++++|+. .+.+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|.
T Consensus 17 ~~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCC
Confidence 346999999999953 357899 99999999999999999999999999999999999987 77763
Q ss_pred -----EEEEcCCCCCCC-CcHHHHHhcCCCC---CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHH
Q 000505 661 -----KAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 661 -----~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 727 (1458)
++||+|++-++. .||+|||.|+... ... +.+++++..++.+ ....+..+|||||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQ 156 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHH
Confidence 699999998875 5999999997432 222 2233333333322 234566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhc-cCCEEEEEeCCeEEEcccchh
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~ 805 (1458)
||+|||||+.+|+++|||||||+||+.....+.+.+.+-.. .+.|+|+||||.+++. .||+|++|++|++.+.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99999999999999999999999999998877654433222 3799999999999865 599999999999999999999
Q ss_pred hhhhcc
Q 000505 806 LIADQN 811 (1458)
Q Consensus 806 l~~~~~ 811 (1458)
+.....
T Consensus 237 ~~~~p~ 242 (377)
T PRK11607 237 IYEHPT 242 (377)
T ss_pred HHhCCc
Confidence 876433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=314.44 Aligned_cols=190 Identities=26% Similarity=0.365 Sum_probs=157.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468899999853 368999 99999999999999999999999999999999999987 6765
Q ss_pred -EEEEEcCCCCCC-CCcHHHHHhcCCC---CCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 000505 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 -~~ayv~Q~~~i~-~~Ti~enI~fg~~---~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1458)
.++|++|++.++ +.|++||+.++.. .++++.+++++..++.+. ......+|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHH
Confidence 379999998876 5799999987532 233444555555555432 234567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
++.+|+++||||||++||+.+.+.+.+ .+.... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999887765 454443 58999999999999875 9999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=363.18 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=185.6
Q ss_pred cEEEEeeeEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH---
Q 000505 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L--- 1281 (1458)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hcceEEEccCCCCccc-cHHHhcCcC----CCC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000505 1282 -RSRLSIIPQDPMLFQG-TVRTNLDPL----EQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 -R~~i~iIpQdp~LF~g-TIR~NLdp~----~~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1458)
|+.++|+||+|.+|++ |+.+|++.. +.. .++++.+.++.+++.+..... ..+||+||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-----------PSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-----------cccCCHHHHHH
Confidence 6789999999999975 999999631 111 123456677777776554332 34799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~~DrVlvL~~G~ivE~g~p~~Ll 1430 (1458)
++|||||+++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..||++++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998764 478999999999999889999999999999999999876
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=318.51 Aligned_cols=190 Identities=31% Similarity=0.432 Sum_probs=153.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46889999996420 11468999 99999999999999999999999999999999999986 5543
Q ss_pred -------EEEEEcCCCCCCCC-cHHHHHhcCCCCC-------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 -------KKAYVPQSSWIQTG-TIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 -------~~ayv~Q~~~i~~~-Ti~enI~fg~~~~-------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++|++|++.++.. |++||+.++..+. +++.+++++..++.+ .......+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHH
Confidence 47999999988765 9999999864321 122333344443322 234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEeCCeE
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1458)
||||++||||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++..||+|++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999777765 555544 37999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=313.34 Aligned_cols=434 Identities=19% Similarity=0.230 Sum_probs=300.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CHHH------HHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000505 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSGI------IINMINVDVERIGDFFLYIHR-IWLLPVQVFLALVIL 409 (1458)
Q Consensus 339 ~~~~~r~g~~iR~~L~~~Iy~K~L~ls~~~~--~~G~------ivnlms~D~~ri~~~~~~~~~-~w~~plqi~~al~lL 409 (1458)
.|..+++.++.|.-|+..+.+|=|.-...-+ ..|+ .=..++.|+..+.+....+-. +.-..++++.=..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999876543322 2222 224677777776665544333 333334444444567
Q ss_pred HHHhhhHH---------HHHHHH--HHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHhccH
Q 000505 410 YKNLGAAP---------AFAALF--STIFVMVSNTPLA----NRQERFHS-MIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1458)
Q Consensus 410 ~~~lG~~a---------~l~gl~--~~~i~~~~~~~~~----~~~~~~q~-~~m~~~D~Rv~~~sE~L~~ik~IKl~~wE 473 (1458)
|..-| .. .++|.. ++++.+++...++ |..-+.-. +....-|-|-.+ ..+.++-..|-+|+-|
T Consensus 187 w~lsg-~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L-vrv~enaE~IAly~GE 264 (604)
T COG4178 187 WSLSG-GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL-VRVRENAEAIALYRGE 264 (604)
T ss_pred HHccC-cceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH-HHHHhhHHHHHHhcCc
Confidence 75444 22 122221 1222233333333 32222111 111223445433 3567788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000505 474 QEFLKKLLRLREIERDSLKKYL----YTCSAIAFLFWAS---PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (1458)
Q Consensus 474 ~~f~~~I~~~R~~El~~l~k~~----~~~a~~~~~~~~~---p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl 546 (1458)
+.-++++.+.=..=++..++.. .+..+.....+++ |.++.+ =.++.+.++-+.+.++-..|+.+...+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~a-----p~~f~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAA-----PRYFSGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhcc-----HhhhcCcChHHHHHHHHHHHHHHHHHH
Confidence 8777766554222222222111 1111111112222 222211 124577899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC-CCCCCC------CCCCccEEEeeeEEEeCCcccccCCCcccccC-
Q 000505 547 YNLPELISMIAQTKVSLYRIQEFIKEDN--QKKP-ITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD- 616 (1458)
Q Consensus 547 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~~-~~~~~~------~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~- 616 (1458)
..+-+.+..+.+-++++.|+.+|-..-| +.+. ....+. +..+..|.++|.+..-++. .+.+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~l 412 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSEL 412 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeeccc
Confidence 9999999999999999999999985433 1111 000000 1114679999999987654 477888
Q ss_pred cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEEC-C-EEEEEcCCCCCCCCcHHHHHhcCCC---CCHHHHH
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYE 691 (1458)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~-g-~~ayv~Q~~~i~~~Ti~enI~fg~~---~~~~~y~ 691 (1458)
|+.+++|+.+.|.|++|||||||+++|+|..|--+|++ ..+ + .+-|+||.|.++.||.||-|++... ++++.+.
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHH
Confidence 99999999999999999999999999999999999986 444 3 3799999999999999999999753 6678899
Q ss_pred HHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCc
Q 000505 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771 (1458)
Q Consensus 692 ~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~ 771 (1458)
+++..|+|.+-.+.+.+-+. =...||||||||++.||.++++|++++|||.|||||+.+...+++ .+++.+.+.
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~ 565 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDA 565 (604)
T ss_pred HHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCC
Confidence 99999999988887654332 345799999999999999999999999999999999999888876 567777899
Q ss_pred EEEEEecccchhccCCEEEEEe
Q 000505 772 TVLYTTHQLEFLDAADLVLVMK 793 (1458)
Q Consensus 772 tvilvtH~~~~l~~~D~i~~l~ 793 (1458)
|+|-|.|+.......++.+.+.
T Consensus 566 tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 566 TVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEEEeccchhhHHHHhhheeec
Confidence 9999999988777666666554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=335.94 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=164.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68899999997320 12468999 99999999999999999999999999999999999986 6654
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++.. .... +.++.++..++. ........+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 3799999998765 799999998642 2222 222233333332 12345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999887766 454443 37999999999999875 99999999999999999
Q ss_pred chhhhhh
Q 000505 803 YEDLIAD 809 (1458)
Q Consensus 803 ~~~l~~~ 809 (1458)
.+++...
T Consensus 225 ~~~~~~~ 231 (343)
T PRK11153 225 VSEVFSH 231 (343)
T ss_pred HHHHHhC
Confidence 9988753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=315.86 Aligned_cols=187 Identities=33% Similarity=0.502 Sum_probs=151.5
Q ss_pred EeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------EEE
Q 000505 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY 663 (1458)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------~ay 663 (1458)
++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|. ++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 5678888853 357899 99999999999999999999999999999999999997 77773 899
Q ss_pred EcCCCCC---CCCcHHHHHhcCCCC--------C---HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 664 VPQSSWI---QTGTIRENILFGKDM--------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 664 v~Q~~~i---~~~Ti~enI~fg~~~--------~---~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
++|++.+ ++.|++||+.++... . +++.+++++.+++.+.. .....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHH
Confidence 9999875 457999999886431 1 12334445555543222 245678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
+||||+..+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999887766 454443 67999999999999865 9999999886 54443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=331.01 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=163.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+. ...+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46899999999963 358999 99999999999999999999999999999999999987 7765
Q ss_pred ----EEEEEcCCCCCC-CCcHHHHHhcCCCC---CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHH
Q 000505 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~-~~Ti~enI~fg~~~---~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 727 (1458)
.+|||||++.++ +.|++||+.|.... +.. +.+++++.+++.. ....+..+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHH
Confidence 379999998876 47999999863221 111 2223333333321 123455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchh
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1458)
|++||||+.++|++++|||||++||+.+.+.+++ .+..+. +|+|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888776 455543 48999999999999976 99999999999999999988
Q ss_pred hhh
Q 000505 806 LIA 808 (1458)
Q Consensus 806 l~~ 808 (1458)
+.+
T Consensus 225 l~~ 227 (306)
T PRK13537 225 LIE 227 (306)
T ss_pred HHh
Confidence 865
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=319.73 Aligned_cols=186 Identities=24% Similarity=0.440 Sum_probs=159.5
Q ss_pred EEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEEEccCCCC---ccccHHHhcCcC
Q 000505 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVRTNLDPL 1306 (1458)
Q Consensus 1230 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L---F~gTIR~NLdp~ 1306 (1458)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 357889999999976 457999998532
Q ss_pred --------CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCC
Q 000505 1307 --------EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375 (1458)
Q Consensus 1307 --------~~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTssl 1375 (1458)
.. ..++++.++++.+++.+.. ++.+ ..||+|||||++||||++++|++|+|||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------DRPV----GELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-------cCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 1234577888888886543 3333 359999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1376 DTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1376 D~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
|+.+...+.+.|++.. ++.|+|+++|+++.+.. ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998764 47899999999998865 9999999 7999999999998753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=326.43 Aligned_cols=201 Identities=27% Similarity=0.403 Sum_probs=167.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+.. ..+.+++ ||+|++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcH
Confidence 358999999999642 2468999 99999999999999999999999999999999999987 6766
Q ss_pred -----EEEEEcCCC--CCCCCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 -----~~ayv~Q~~--~i~~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|+| .+++.|++|||.++... .+ ++.+++++.++|...+ .....+|||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~ 145 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-----------NREPHRLSGGQ 145 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHH
Confidence 369999998 45678999999986321 21 2234445555554332 34556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhccCCEEEEEeCCeEEEcccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1458)
|||++||||++.+|+++||||||++||+.+...+++ ++..+. + ++|+|++||+++.+..||+|++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999888776 455544 3 7899999999999888999999999999999998
Q ss_pred hhhhh
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~~l~~ 808 (1458)
+++..
T Consensus 225 ~~~~~ 229 (279)
T PRK13635 225 EEIFK 229 (279)
T ss_pred HHHhc
Confidence 88765
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=312.28 Aligned_cols=173 Identities=27% Similarity=0.435 Sum_probs=147.7
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--CCHHHHhcceEEEccCC--CCccc
Q 000505 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRLSIIPQDP--MLFQG 1297 (1458)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i~iIpQdp--~LF~g 1297 (1458)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 459999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000505 1298 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1458)
Q Consensus 1298 TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1370 (1458)
|+++|+... ...+ ++++.++++..++.+..... + ..||+|||||++|||||+++|++|+|||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-------T----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-------h----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999632 1122 23567788888886654332 2 4699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000505 1371 ATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT 1405 (1458)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~t 1405 (1458)
||++||+.+.+.+.+.|++.. +++|||+|+|+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998764 47899999999865
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=289.30 Aligned_cols=217 Identities=29% Similarity=0.440 Sum_probs=187.9
Q ss_pred cEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----------
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---------- 1276 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i---------- 1276 (1458)
.++++|+..+|.+. .||||||++.++|+.|.|+|.|||||||++.++-=+-.|+.|+|.++|..|..-
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58899999999764 499999999999999999999999999999999999999999999999877532
Q ss_pred ---CHHHHhcceEEEccCCCCccc-cHHHhcC--cC---CCCCHHHH---HHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000505 1277 ---GLQDLRSRLSIIPQDPMLFQG-TVRTNLD--PL---EQHSDQEI---WEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1277 ---~l~~LR~~i~iIpQdp~LF~g-TIR~NLd--p~---~~~sdeeI---~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1458)
.++.+|+++++|.|.-.|++. |+-+|.- |. +.-.++.+ ...|.++|+.+-...-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 256789999999999999976 9999984 42 22233333 34577888877544333 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
|||||+||.+|||||.-+|+++++|||||+||++--..+.+++++.. .++|.++|||.+...++ +..|+.|.+|+|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999888764 58999999999999988 88999999999999
Q ss_pred ecChhHHhhcCCCh
Q 000505 1423 YDSPRQLLEDNSSS 1436 (1458)
Q Consensus 1423 ~g~p~~Ll~~~~s~ 1436 (1458)
.|+|+++..++.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999998764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.39 Aligned_cols=208 Identities=23% Similarity=0.276 Sum_probs=169.4
Q ss_pred cEEEEeeeEEeCC------------------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000505 1207 KIELENLLVQYNP------------------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~------------------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1268 (1458)
.|+++||+..|+. ...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4777788776644 1235899999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCCHHHHhcceEEEccCCCCcc-ccHHHhcCcC---CCCCHHHHH----HHHHHcCcHHHHHhcccccCccccC
Q 000505 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL---EQHSDQEIW----EVINKCHLAEIVRQDQRLLDAPVAE 1340 (1458)
Q Consensus 1269 DG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~---~~~sdeeI~----~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1458)
||. +++++|++.++. .|+++|+... ...++++.. ++++..++.+.+ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 994 467788886664 4999998531 123444433 345555554433 22
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCC
Q 000505 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEG 1418 (1458)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G 1418 (1458)
....||+|||||++||||++++|+||+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 345799999999999999999999999999999999999999999988753 47899999999999865 9999999999
Q ss_pred EEEEecChhHHhhcCCChHH
Q 000505 1419 KVLEYDSPRQLLEDNSSSFS 1438 (1458)
Q Consensus 1419 ~ivE~g~p~~Ll~~~~s~F~ 1438 (1458)
++++.|++++++++....|+
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHH
Confidence 99999999999875444333
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=321.98 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=166.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1458)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++ |++|++ .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 45899999999963 358999 99999999999999999999999999999986 478986 5544
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~----~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~ 719 (1458)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. +..++...
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 3789999998888999999998642 222 22333444444432221 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
+||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998777765 55555567899999999999865 9999999999999
Q ss_pred Ecccchhhhh
Q 000505 799 QSGKYEDLIA 808 (1458)
Q Consensus 799 ~~g~~~~l~~ 808 (1458)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999888865
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=316.48 Aligned_cols=197 Identities=26% Similarity=0.428 Sum_probs=158.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468899999853 357899 99999999999999999999999999999999999986 6654
Q ss_pred ----EEEEEcCCCCCCCC-cHHHHHhcCCCCC--HH---HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR--QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~enI~fg~~~~--~~---~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.++.. |++||+.++.... .+ +.+++++.. ..+ ....+.+..+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 27999999987764 9999999875432 11 111222221 111 1123466789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 807 (1458)
+||||+..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFE-AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999877765 454443 57999999999998765 9999999999999998877664
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.22 Aligned_cols=198 Identities=30% Similarity=0.437 Sum_probs=163.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.. .+.+++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6789999999632 358999 99999999999999999999999999999999999986 6654
Q ss_pred ----EEEEEcCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 ----~~ayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|+|. +++.|++|||.++.. .+. ++.+++++.+++.. .......+||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-----------YRHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCCcccCCHHHH
Confidence 2699999986 467899999998742 122 22333344444322 23456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhccCCEEEEEeCCeEEEcccchh
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~ 805 (1458)
||++||||++.+|+++||||||++||+.+...+++. +..+. +++|+|++||+++.++.||+|++|++|++++.|+.++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999998877764 44443 5899999999999987899999999999999999888
Q ss_pred hhh
Q 000505 806 LIA 808 (1458)
Q Consensus 806 l~~ 808 (1458)
+..
T Consensus 222 ~~~ 224 (274)
T PRK13644 222 VLS 224 (274)
T ss_pred Hhc
Confidence 764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=318.59 Aligned_cols=197 Identities=26% Similarity=0.398 Sum_probs=159.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468899999963 358899 99999999999999999999999999999999999986 6654
Q ss_pred ----EEEEEcCCCCCCCC-cHHHHHhcCCCC---CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHH
Q 000505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~enI~fg~~~---~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 727 (1458)
.++|++|++.++.. |++||+.++.+. ... +.++.++..++ ....+....+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 27999999987765 999999875321 111 11222222222 12345667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchh
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1458)
|++||||+..+|+++||||||++||+.+.+.+.+ +++.+. .++|+|++||+++.+.. ||+|++|++|++.+.|+.++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 9999999999999999999999999999887765 454443 47899999999998765 99999999999999998887
Q ss_pred hhh
Q 000505 806 LIA 808 (1458)
Q Consensus 806 l~~ 808 (1458)
+..
T Consensus 220 ~~~ 222 (232)
T cd03218 220 IAA 222 (232)
T ss_pred hhc
Confidence 754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.66 Aligned_cols=195 Identities=28% Similarity=0.342 Sum_probs=161.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45899999999963 358899 99999999999999999999999999999999999987 6665
Q ss_pred EEEEEcCCCCCCC-CcHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 000505 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1458)
Q Consensus 660 ~~ayv~Q~~~i~~-~Ti~enI~fg~~~-~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1458)
.++|++|++.++. .|++||+.++... .+++.++.++..++.. ..+....+||||||||++||||++.
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhc
Confidence 3799999988765 6999999986421 1233444455444432 2345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHH-h-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccch
Q 000505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 738 ~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1458)
+|+++||||||++||+.+...+.+ ++..+ . .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQD-LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999877765 45444 2 37999999999999864 9999999999999887754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=330.25 Aligned_cols=200 Identities=31% Similarity=0.440 Sum_probs=162.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
+..++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~ 72 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRA 72 (303)
T ss_pred CcEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccH
Confidence 346899999999963 358999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCCCC-CCcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.++|++|++.++ ..|++||+.+... .+.. +.+++++.+++.+ ....+..+||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMK 141 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHH
Confidence 379999998876 4699999975221 2221 1222333333321 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccch
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1458)
||++||||++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|++||+++++.. ||+|++|++|+++..|+.+
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999887766 44444 358999999999999875 9999999999999999988
Q ss_pred hhhh
Q 000505 805 DLIA 808 (1458)
Q Consensus 805 ~l~~ 808 (1458)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=326.50 Aligned_cols=185 Identities=33% Similarity=0.453 Sum_probs=152.5
Q ss_pred cccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEcCCCCCC-
Q 000505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1458)
Q Consensus 611 ~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-----------------~~ayv~Q~~~i~- 671 (1458)
.+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++| .++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 357899 99999999999999999999999999999999999986 5544 479999999887
Q ss_pred CCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000505 672 TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1458)
Q Consensus 672 ~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lL 744 (1458)
+.|++||+.++.. .+. ++.+++++.+++.+. ......+||||||||++||||++.+|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW-----------EHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5699999987532 111 223444444444322 2345568999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhhh
Q 000505 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1458)
||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+.. ||++++|++|++.+.|+.+++.+
T Consensus 185 DEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 185 DEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999887765 454443 37999999999998765 99999999999999999988865
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.25 Aligned_cols=190 Identities=31% Similarity=0.430 Sum_probs=154.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468899999863 357899 99999999999999999999999999999999999986 6655
Q ss_pred -EEEEEcCCCCCCC-CcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++. .|++||+.++.. ...+. .++.++..++. ........+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHH
Confidence 3799999998874 699999987632 12222 22233333332 1234566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
||||++.+|+++||||||++||+++.+.+.+ +++.+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999887766 454443 37999999999998875 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=327.04 Aligned_cols=204 Identities=24% Similarity=0.400 Sum_probs=164.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.... ...+.++| ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4789999999974200 01468999 99999999999999999999999999999999999986 6655
Q ss_pred --------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++|++|+| .++..|++|||.|+.. ... ++.+++++.+++..+ ....+..+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCC
Confidence 269999997 4667899999987632 221 122333444444311 1245677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1458)
||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. ++.|+|++||+++++.. ||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998777765 555543 47999999999999864 999999999999999
Q ss_pred ccchhhhh
Q 000505 801 GKYEDLIA 808 (1458)
Q Consensus 801 g~~~~l~~ 808 (1458)
|+.+++..
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99888764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=318.31 Aligned_cols=197 Identities=22% Similarity=0.393 Sum_probs=162.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ |+++++|++++|+|+||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999863 358999 99999999999999999999999999999999999986 6665
Q ss_pred --EEEEEcCCCCC-CCCcHHHHHhcCCCC---CHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWI-QTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i-~~~Ti~enI~fg~~~---~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.+ +..|++||+.++... .... .++.++..++ ....+.+..+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHH
Confidence 37999999877 568999999875321 1111 1222222222 2234567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEeCCeEEEcccchhhh
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~ 807 (1458)
+||||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++++..||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999888776 455443 479999999999998889999999999999999988776
Q ss_pred h
Q 000505 808 A 808 (1458)
Q Consensus 808 ~ 808 (1458)
+
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=323.55 Aligned_cols=204 Identities=23% Similarity=0.354 Sum_probs=166.7
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC--
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g-- 659 (1458)
+..++++|++++|+. .+.++| ||+|++|++++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 17 ~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~~ 87 (267)
T PRK14235 17 EIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGED 87 (267)
T ss_pred CceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEE
Confidence 457999999999963 358999 999999999999999999999999999999874 88986 5554
Q ss_pred -------------EEEEEcCCCCCCCCcHHHHHhcCCCC-----C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCC
Q 000505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1458)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~enI~fg~~~-----~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~ 717 (1458)
.++|++|++.++..|++||+.++..+ . .++.+++++.+++.+++. +..+..
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 160 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEP 160 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCC
Confidence 36999999998878999999986421 1 122334444444433221 123566
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCe
Q 000505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1458)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1458)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||++++|++|+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGN 239 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 78999999999999999999999999999999999998777654 56655567899999999999865 99999999999
Q ss_pred EEEcccchhhhh
Q 000505 797 IEQSGKYEDLIA 808 (1458)
Q Consensus 797 i~~~g~~~~l~~ 808 (1458)
+++.|+.+++..
T Consensus 240 i~~~g~~~~~~~ 251 (267)
T PRK14235 240 LVEVGDTEKMFT 251 (267)
T ss_pred EEEeCCHHHHHh
Confidence 999999888764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=326.01 Aligned_cols=199 Identities=24% Similarity=0.411 Sum_probs=165.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.+ .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 358999 99999999999999999999999999999999999986 6665
Q ss_pred ------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 ------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++|++|+| .+++.|++||+.++.. +.. ++.+++++.++|.. .....+.+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHH
Confidence 269999998 5678899999988532 111 22344445444432 234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhc-cCCEEEEEeCCeEEEcc
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1458)
||||++|||||+.+|+++||||||++||+.+...+.+ ++..+. + ++|||++||+++++. .||+|++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999887765 455443 3 799999999999987 59999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
+++++..
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 9988865
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=317.96 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=161.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 67899999996320 11268999 99999999999999999999999999999999999986 5554
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++.. .+.. +.++.++..++. ........+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-----------DKADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhhcChhhCCHHH
Confidence 3799999998875 699999987532 1211 122223333322 22345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
|||++||||+..+|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999877765 454443 3 7899999999999865 99999999999999998
Q ss_pred chhhhh
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~~l~~ 808 (1458)
.+++.+
T Consensus 225 ~~~~~~ 230 (233)
T cd03258 225 VEEVFA 230 (233)
T ss_pred HHHHhc
Confidence 877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=321.63 Aligned_cols=202 Identities=22% Similarity=0.367 Sum_probs=163.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc--C---CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~--~---~~G~~i~~~g---- 659 (1458)
.++++|+++.|+. .+.+++ ||+|++||+++|+|+||||||||+++|+|.++ | ++|++ .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999863 358999 99999999999999999999999999999987 3 58976 5544
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++... +++. .+++++..++.+.+. +..+..+.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCccc
Confidence 37999999998888999999886422 1111 122333333322211 234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+++...+.+ ++..+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998777654 66666567999999999999865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999988865
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.51 Aligned_cols=196 Identities=27% Similarity=0.343 Sum_probs=158.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997430 12468999 99999999999999999999999999999999999986 6654
Q ss_pred --------EEEEEcCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 --------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++|++|++.++. .|++||+.++.. .+. ++.+++++.+++. ........+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCH
Confidence 3799999988765 599999987421 121 2223344444332 223456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1458)
|||||++||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++..+|++++|++|+|++.|
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999877765 455443 479999999999999888899999999998876
Q ss_pred c
Q 000505 802 K 802 (1458)
Q Consensus 802 ~ 802 (1458)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 5
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=356.62 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=175.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCCcEEEEc----------------
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILID---------------- 1269 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~ID---------------- 1269 (1458)
|+++|++++|.. ..+|+|+||++++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CeeCC-------CCC---HHHHhcceEEEccC-CCCccc-cHHHhcCc-C--CCCC----HHHHHHHHHHcCc
Q 000505 1270 -------GVDIS-------MIG---LQDLRSRLSIIPQD-PMLFQG-TVRTNLDP-L--EQHS----DQEIWEVINKCHL 1323 (1458)
Q Consensus 1270 -------G~dI~-------~i~---l~~LR~~i~iIpQd-p~LF~g-TIR~NLdp-~--~~~s----deeI~~aL~~~~L 1323 (1458)
|.++. ..+ ...+|++++++||+ +.+|.. |+++|+.. . ...+ ++++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33331 111 23467889999998 577764 99999853 1 1122 2346677888887
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEec
Q 000505 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAH 1401 (1458)
Q Consensus 1324 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAH 1401 (1458)
.+... ..+ .+||||||||++|||||+.+|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|
T Consensus 159 ~~~~~-------~~~----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRIT-------HIA----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhh-------cCc----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 55432 222 4699999999999999999999999999999999999999999998863 3789999999
Q ss_pred Chhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000505 1402 RIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1402 rl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~ 1431 (1458)
+++.+.. ||+|++|++|++++.|+++++++
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999875 99999999999999999988865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=310.31 Aligned_cols=188 Identities=19% Similarity=0.325 Sum_probs=160.0
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
|+++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.... ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999964 3344 599999999999999999999999999999999999999999999886542 456999
Q ss_pred EccCCC-CccccHHHhcCcCC-C-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000505 1288 IPQDPM-LFQGTVRTNLDPLE-Q-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1288 IpQdp~-LF~gTIR~NLdp~~-~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1458)
+||++. +|..|+++|+.... . ..++++.++++.+++.+...+ .+.+||+|||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999975 46789999996422 1 135677888888888655432 345799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEE
Q 000505 1365 ILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVL 1413 (1458)
Q Consensus 1365 ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHrl~ti~~~DrVl 1413 (1458)
+|+|||||+++|+.+.+.+.+.|++. .+++|+|+|+|+++.+..+|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 35799999999999999998764
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=306.11 Aligned_cols=337 Identities=19% Similarity=0.254 Sum_probs=237.9
Q ss_pred HHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCcCHH
Q 000505 1070 SESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL------PRSAIDPS 1143 (1458)
Q Consensus 1070 ~Etl~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~------~~~~~~~~ 1143 (1458)
++-..+...|--|+.++......+...++.............|+.+..+++--+... ...+++.. +.+..+|.
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~i-lsy~vi~~p~Fs~h~y~~~s~a 347 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGI-LSYVVIAIPFFSGHVYDDLSPA 347 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-heeeEEeeeeecccccCCcCHH
Confidence 444566777777877665554444444444444445556677888776665522211 11111111 22334444
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC----C-------------CCCccccC-CCCCCCC
Q 000505 1144 LAGLAAT----YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI----P-------------SEAPLVIK-NSRPSPE 1201 (1458)
Q Consensus 1144 ~~gl~l~----y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~----~-------------~E~~~~~~-~~~~~~~ 1201 (1458)
..--.++ +.+.+...+..++....++..-..-..||-|+.+. . .|..+... .+..+..
T Consensus 348 EL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~ 427 (659)
T KOG0060|consen 348 ELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKA 427 (659)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccc
Confidence 3222221 22223333333333333333333445677777531 1 11111110 0111356
Q ss_pred CCCCccEEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHH
Q 000505 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1281 (1458)
||....|+|++|++.-+.+.+.+.+|+||+|+.|+.+-|+||||||||||++.|.|+.+..+|+|.--...-.
T Consensus 428 ~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------- 500 (659)
T KOG0060|consen 428 EPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------- 500 (659)
T ss_pred ccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-------
Confidence 7888889999999998776777788899999999999999999999999999999999999999875432111
Q ss_pred hcceEEEccCCCCccccHHHhcC-cC-------CCCCHHHHHHHHHHcCcHHHHHhcccccCcccc-CCCCCCChhHHHH
Q 000505 1282 RSRLSIIPQDPMLFQGTVRTNLD-PL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA-EDGENWSVGQRQL 1352 (1458)
Q Consensus 1282 R~~i~iIpQdp~LF~gTIR~NLd-p~-------~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~-e~G~nLSgGQrQr 1352 (1458)
+.+-++||.|++-.||+|+-+- |. +..+|++|.+.|+.++|.+.+... +|+|.++. +=.+-||+||+||
T Consensus 501 -~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHH
Confidence 3589999999999999999973 52 246899999999999999888764 89997664 3456799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCC
Q 000505 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEG 1418 (1458)
Q Consensus 1353 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHrl~ti~~~DrVlvL~~G 1418 (1458)
+|+||.++.+|++-+|||+||+||.+.|..+-+.+|+. +-|.|+|.||-+..+..|.++-|+.+
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 99999999999999999999999999999999999984 88999999999999999999999864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=304.41 Aligned_cols=165 Identities=28% Similarity=0.551 Sum_probs=147.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1458)
++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4688999999643 2368999 99999999999999999999999999999999999987 77763
Q ss_pred ---EEEEcCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 000505 661 ---KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1458)
Q Consensus 661 ---~ayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1458)
++|++|++++++.|++||+ ..+||||||||++||||++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 7999999999889999998 45899999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCCeEEEcc
Q 000505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 738 ~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1458)
+|+++||||||++||+++.+.+++ .+..+.+++|+|++||++++++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999877765 455555689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=334.76 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=169.2
Q ss_pred cEEEEeeeEEeCCCC-CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcce
Q 000505 1207 KIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1458)
.++++|++++|..+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997642 3699999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCCcc-ccHHHhcCcC---CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000505 1286 SIIPQDPMLFQ-GTVRTNLDPL---EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~---~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1458)
++++.+.++. .|+++|+... ...++++ +.++++.+++.++... + ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-------~----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-------P----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-------C----cccCCHHHHHHHHHHH
Confidence 2333444443 4999998642 1233333 4467777877665433 2 3469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1358 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g~p~~Ll~~ 1432 (1458)
||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998753 47899999999999866 999999999999999999999864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=314.57 Aligned_cols=194 Identities=23% Similarity=0.377 Sum_probs=156.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ |+++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999996430 11268999 99999999999999999999999999999999999987 6665
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.++. .|++||+.+... ... ++.++.++..++. ........+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHH
Confidence 3799999998876 599999976432 111 2223334433332 223456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
+||||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++++.. ||++++|++|++.+.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALRE-FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999777765 455443 47999999999998865 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=318.81 Aligned_cols=200 Identities=28% Similarity=0.411 Sum_probs=160.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.. .+.+++ |+++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 4678999999641 357899 99999999999999999999999999999999999986 6655
Q ss_pred ---EEEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
.++|++|+|.++. .|++||+.++..+ +. ++.+++++..++.. .....+.+.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 3699999998875 6999999876322 21 12223333333321 012346678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchh
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1458)
++||||++.+|++++|||||++||+.+...+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999998777765 454443 37999999999998764 99999999999999999887
Q ss_pred hhh
Q 000505 806 LIA 808 (1458)
Q Consensus 806 l~~ 808 (1458)
+.+
T Consensus 223 ~~~ 225 (242)
T cd03295 223 ILR 225 (242)
T ss_pred HHc
Confidence 754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=289.65 Aligned_cols=192 Identities=29% Similarity=0.380 Sum_probs=163.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|+++|++-.|+.. .+.|+| ||+|++||++.++||+|||||||||+|.++..|+.|++ .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 6888999888753 678999 99999999999999999999999999999999999987 6665
Q ss_pred ------EEEEEcCCCCC-CCCcHHHHHhcCCCC---C----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWI-QTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i-~~~Ti~enI~fg~~~---~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
+||+|+|+--+ ...||.||+.|.... . +++..++++..+|.+....+| ..|||||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchH
Confidence 47999999765 677999999997532 2 244455667777777666665 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
||||+||||+..+|+++|-||||-+|||..+..|++-+..--..|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999986433333469999999999999986 6789999999998654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.62 Aligned_cols=202 Identities=24% Similarity=0.351 Sum_probs=164.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 5889999999963 368999 99999999999999999999999999999986 478986 5544
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++... ++ ++.+++++.+++..+. ....+..+.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhh
Confidence 37999999998889999999876421 11 2233344444442211 1123467789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|++.+
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999777765 55555567999999999999865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999888764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.86 Aligned_cols=189 Identities=24% Similarity=0.381 Sum_probs=155.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|+++.|+. .+.+++ ||++++| +++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 468899999953 368999 9999999 999999999999999999999999999987 6665
Q ss_pred --EEEEEcCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHH
Q 000505 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 729 (1458)
.++|++|++.++. .|++||+.+... .+ +++.++.++.+++.+. ......+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHH
Confidence 3799999998876 499999987432 11 1223344444444322 1245578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
+||||++++|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999887765 55555557999999999999865 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=320.61 Aligned_cols=202 Identities=26% Similarity=0.377 Sum_probs=164.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCC---ccC--CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~---~~~--~~G~~i~~~g---- 659 (1458)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|. .++ ++|++ .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 357899 999999999999999999999999999996 454 48976 5544
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++... ++ ++.+++++.+++.++++ +..++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 37999999988888999999876321 11 22334445454433222 224567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|+|||+++++.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 55555568999999999999865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999998865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.36 Aligned_cols=202 Identities=23% Similarity=0.369 Sum_probs=163.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCc--cC---CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PR---ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~---~~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.. +| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5889999999963 358899 9999999999999999999999999999985 35 48976 5554
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.+++.|++||+.++... +++ +.+++++.+++...+. +..+....+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 37999999999889999999875321 111 1222333333322221 234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||+..+|+++||||||++||+.+...+++ .+..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888765 55555557999999999998764 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T PRK14239 228 YNDTKQMFM 236 (252)
T ss_pred eCCHHHHHh
Confidence 999988865
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=336.74 Aligned_cols=198 Identities=26% Similarity=0.455 Sum_probs=165.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4889999999963 368999 99999999999999999999999999999999999987 7766
Q ss_pred ----EEEEEcCCCCC-CCCcHHHHHhcCCC-----C---C---HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCCh
Q 000505 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----M---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 ----~~ayv~Q~~~i-~~~Ti~enI~fg~~-----~---~---~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSG 723 (1458)
.++||+|++-+ ++.|++||+.+|+. + . .++.+++++..++.+ .......+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCH
Confidence 37999999876 67899999998752 1 1 122333444444332 12345678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
|||||++|||||+++|+++||||||++||+.+...+.+ +++.+. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999887765 455443 57899999999999865 9999999999999999
Q ss_pred cchhhhh
Q 000505 802 KYEDLIA 808 (1458)
Q Consensus 802 ~~~~l~~ 808 (1458)
++++++.
T Consensus 222 ~~~ev~~ 228 (402)
T PRK09536 222 PPADVLT 228 (402)
T ss_pred CHHHHhC
Confidence 9999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.46 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=163.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1458)
..++++|.+++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999864 688986 5543
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCCCC----H----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~----~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~ 719 (1458)
.++|++|++.++..|++||+.++.... . ++..+.++.+++..++. ...+..+.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcc
Confidence 379999999988889999998763211 1 11222233333322111 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEE
Q 000505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1458)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1458)
+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999877754 56655567899999999998865 9999999999999
Q ss_pred Ecccchhhhh
Q 000505 799 QSGKYEDLIA 808 (1458)
Q Consensus 799 ~~g~~~~l~~ 808 (1458)
+.|+.+++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999888765
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=318.77 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=166.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1458)
-++++|+++.|+. .+.+++ |+++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4789999999963 357999 999999999999999999999999999999875 78986 5544
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.|+... +. ++.+++++.+++..+++. ..+....+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc
Confidence 37999999998889999999986422 11 223345555555333221 23456789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999887765 56655557999999999999875 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999988865
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=320.79 Aligned_cols=204 Identities=23% Similarity=0.350 Sum_probs=165.4
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g-- 659 (1458)
+..++++|++++|+. .+.+++ ||+|++|++++|+|+||||||||+++|+|.++ |++|++ .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 346999999999963 357899 99999999999999999999999999999987 588986 5554
Q ss_pred -------------EEEEEcCCCCCCCCcHHHHHhcCCCCC---H---HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~---~---~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++.... . ++.+++++.+++...+ .+.......+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCccc
Confidence 379999999988789999999875321 1 2223333333332211 1234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeC-----
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD----- 794 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~----- 794 (1458)
||||||||++||||++.+|+++||||||++||+.+..++.+ .+..+.+++|+|++||+++++.. ||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999999887765 56655567899999999999865 999999996
Q ss_pred ------CeEEEcccchhhhh
Q 000505 795 ------GKIEQSGKYEDLIA 808 (1458)
Q Consensus 795 ------G~i~~~g~~~~l~~ 808 (1458)
|++++.|+.+++.+
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67899999988865
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=320.20 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=164.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1458)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 36899999999853 357999 999999999999999999999999999999875 78986 5543
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.|+.. .+... .+++++.+++..++ ....+....+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhh
Confidence 3799999999888999999998632 12221 22333333332211 1223567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++++.. ||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877765 55555567999999999999865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++.+
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14268 234 FGQTRQIFH 242 (258)
T ss_pred eCCHHHHhc
Confidence 999988865
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=321.75 Aligned_cols=199 Identities=25% Similarity=0.332 Sum_probs=162.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999853 357899 99999999999999999999999999999999999986 6654
Q ss_pred --------EEEEEcCCCCCCCC-cHHHHHhcCCC----CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 --------KKAYVPQSSWIQTG-TIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 --------~~ayv~Q~~~i~~~-Ti~enI~fg~~----~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++|++|++.++.. |++||+.++.. .+.. +..+.++..++.. .......+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCC
Confidence 37999999988764 99999987521 1221 1222233333321 2234567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+. + ++|+|++||+++++.. ||+|++|++|++++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999999777765 455443 3 7899999999999875 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++.+
T Consensus 225 ~g~~~~~~~ 233 (269)
T PRK11831 225 HGSAQALQA 233 (269)
T ss_pred eCCHHHHhc
Confidence 999998875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=316.12 Aligned_cols=197 Identities=29% Similarity=0.414 Sum_probs=161.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999853 357999 99999999999999999999999999999999999986 6655
Q ss_pred -----EEEEEcCCCCCC-CCcHHHHHhcCCC----CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~enI~fg~~----~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++ ..|++||+.++.. .+... ..++++..+++ .....+..+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHH
Confidence 379999998876 4699999988631 12211 22223322222 22345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1458)
|||++||||++.+|++++|||||++||+++...+.+ ++..+. +++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999999887766 555443 48999999999999875 999999999999999999
Q ss_pred hhhhh
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~~l~~ 808 (1458)
+++.+
T Consensus 221 ~~~~~ 225 (240)
T PRK09493 221 QVLIK 225 (240)
T ss_pred HHHhc
Confidence 88765
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.76 Aligned_cols=190 Identities=26% Similarity=0.441 Sum_probs=154.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------E
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------~ 660 (1458)
++++|.+++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468899999853 357899 99999999999999999999999999999999999997 7776 4
Q ss_pred EEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHH
Q 000505 661 KAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 661 ~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1458)
++|++|++.++. .|++||+.++... .. ++.++.++..++. ........+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHH
Confidence 799999988765 5999999875321 11 1222333333332 223456678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999998877664 4444 357899999999999865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=324.38 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=165.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCC---CcEEEECC-----
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG----- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~---G~~i~~~g----- 659 (1458)
..++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+++|++ |++ .++|
T Consensus 4 ~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCc
Confidence 468999999999642 2458999 99999999999999999999999999999999987 775 6655
Q ss_pred --------EEEEEcCCCC--CCCCcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 --------KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 --------~~ayv~Q~~~--i~~~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++|++|+|+ +++.|++|||.|+... +. ++.+++++.+++.. ..+....+||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS 145 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANLS 145 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCC
Confidence 3699999984 5678999999987432 22 22334445555432 2345567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhccCCEEEEEeCCeEEEc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~ 800 (1458)
||||||++||||++++|+++||||||++||+.+...+.+ ++..+. + ++|||++||+++++..||++++|++|++++.
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999888776 454443 3 7899999999999878999999999999999
Q ss_pred ccchhhhh
Q 000505 801 GKYEDLIA 808 (1458)
Q Consensus 801 g~~~~l~~ 808 (1458)
|+.+++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99888765
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.06 Aligned_cols=192 Identities=31% Similarity=0.444 Sum_probs=160.5
Q ss_pred cccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEcCCCC-CCCC
Q 000505 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSW-IQTG 673 (1458)
Q Consensus 613 ~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-----------------~~ayv~Q~~~-i~~~ 673 (1458)
-++| ||+|+.||+..|.|-+|||||||++++.++++|++|++ .++| ++++|+|+-- ++..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 4677 99999999999999999999999999999999999997 7877 3699999955 4678
Q ss_pred cHHHHHhcCCCCC----HHHHHHH---HHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000505 674 TIRENILFGKDMR----QSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1458)
Q Consensus 674 Ti~enI~fg~~~~----~~~y~~v---l~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDe 746 (1458)
||.||+.||.+.. +++.+++ ++..+|+..- .....+||||+||||.|||||..||||+|+||
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-----------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-----------DKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-----------hcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999998652 3444443 4444544332 24567899999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHhC-CcEEEEEecccchh-ccCCEEEEEeCCeEEEcccchhhhhhcchHHHH
Q 000505 747 PFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1458)
Q Consensus 747 p~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1458)
|||||||-.+.++-++++....+ +||+|+||||+++. +-.|||.+|+||+|++.|+++|+..++..++..
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 99999999988887776643322 79999999999985 569999999999999999999999866655544
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=324.72 Aligned_cols=204 Identities=26% Similarity=0.400 Sum_probs=162.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+.... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTP---FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCc---cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccc
Confidence 3789999999974300 01368999 99999999999999999999999999999999999986 6655
Q ss_pred --------EEEEEcCCC--CCCCCcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCC
Q 000505 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1458)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LS 722 (1458)
.++|++|++ .+++.|++||+.++.. .+.+. .+++++..++.. .....+..+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 147 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELS 147 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCC
Confidence 269999997 5677899999987632 22221 122233333321 12345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEc
Q 000505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1458)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1458)
||||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. .++|||++||+++++.. ||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999877765 454443 47999999999999865 999999999999999
Q ss_pred ccchhhhh
Q 000505 801 GKYEDLIA 808 (1458)
Q Consensus 801 g~~~~l~~ 808 (1458)
|+.+++..
T Consensus 227 g~~~~~~~ 234 (280)
T PRK13649 227 GKPKDIFQ 234 (280)
T ss_pred CCHHHHhc
Confidence 99888754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=317.61 Aligned_cols=202 Identities=25% Similarity=0.367 Sum_probs=163.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCC-----CCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|. +|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5889999999963 358999 9999999999999999999999999999999987 5875 4433
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++..+ .+++ .+++++..++.+.++ +..+..+.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCccc
Confidence 48999999998888999999986432 1111 122222222221111 234577889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999877755 56555567999999999999876 89999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999888765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=320.40 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=168.0
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g-- 659 (1458)
...++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (267)
T PRK14237 18 EIALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGID 88 (267)
T ss_pred CeEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEE
Confidence 346999999999953 368999 99999999999999999999999999999986 478986 5554
Q ss_pred -------------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
.++|++|++.++..|++||+.++... ++ ++..++++.+++..++. +..+..+
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~ 161 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSA 161 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCc
Confidence 37999999998888999999986321 11 22334455555543332 2345678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhc-cCCEEEEEeCCeE
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i 797 (1458)
.+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++. .||+|++|++|++
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999998777765 5555556799999999999986 4999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
++.|+.+++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988865
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=317.23 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=162.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4789999999863 357899 999999999999999999999999999999974 68986 6655
Q ss_pred ---------EEEEEcCCCCC-CCCcHHHHHhcCCCC-----CHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 ---------KKAYVPQSSWI-QTGTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 ---------~~ayv~Q~~~i-~~~Ti~enI~fg~~~-----~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++-+ ++.|++||+.++... ... +.++.++.+++.+.+. ........+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 37999999875 567999999876421 111 2223334444322111 123456789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhc-cCCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||+.++|++++|||||++||+.+...+.+ ++..+.+++|+|++||+++++. .||+|++|++|++.+
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999887765 4555556899999999999986 599999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 999988865
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=330.04 Aligned_cols=200 Identities=30% Similarity=0.430 Sum_probs=164.0
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
...|+++|++++|+. ...|++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 39 ~~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcch
Confidence 356999999999963 358999 99999999999999999999999999999999999987 7766
Q ss_pred -----EEEEEcCCCCCC-CCcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHH
Q 000505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 726 (1458)
.+||+||++.++ ..|++||+.+... .+.. +.+++++.++|.+ ....+..+||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~k 178 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMK 178 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHH
Confidence 379999999875 5799999985321 1211 1222333333221 12355678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccch
Q 000505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1458)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1458)
||++||||+.++|+++||||||++||+.+...+++ .+..+ .+|+|||++||+++.+.. ||+|++|++|+++..|+.+
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~ 257 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999888776 45444 358999999999999875 9999999999999999998
Q ss_pred hhhh
Q 000505 805 DLIA 808 (1458)
Q Consensus 805 ~l~~ 808 (1458)
++..
T Consensus 258 ~l~~ 261 (340)
T PRK13536 258 ALID 261 (340)
T ss_pred HHHh
Confidence 8865
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=314.07 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=157.1
Q ss_pred EEEEeeeEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCHHHHhcceEE
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1458)
+.++|++.+|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 778888888865 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EccCCCCccccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000505 1288 IPQDPMLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1458)
+..+.|+++|+... ...+. +++.++++..++.+. ++..+ ..||+|||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLPV----KTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCCh----hhCCHHHHHHHHHHHHHh
Confidence 22356999998532 11222 235556666665433 34444 469999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1424 (1458)
Q Consensus 1361 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHrl~ti~~-~DrVlvL~~G~ivE~g 1424 (1458)
++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998764 35899999999999865 9999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=318.98 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=162.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|+++.|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccccc
Confidence 46899999999963 358899 99999999999999999999999999999999999986 5554
Q ss_pred ------------------EEEEEcCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhhhhhhHHhhcCCCcc
Q 000505 660 ------------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLS 712 (1458)
Q Consensus 660 ------------------~~ayv~Q~~~i~~-~Ti~enI~fg~----~~~~----~~y~~vl~~c~l~~dl~~l~~gd~t 712 (1458)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3799999998876 59999998742 1121 1122222322221111
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEE
Q 000505 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1458)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~ 790 (1458)
.+....+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. .++|+|+|||+++++.. ||+|+
T Consensus 146 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 145678999999999999999999999999999999999999888765 455543 48999999999999986 99999
Q ss_pred EEeCCeEEEcccchhhhh
Q 000505 791 VMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~ 808 (1458)
+|++|++++.|+++++..
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999888764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=310.07 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=153.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
|+++|++++|+.. . .+ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4688999998632 1 27 99999999999999999999999999999999999987 7766
Q ss_pred -EEEEEcCCCCCCC-CcHHHHHhcCCCC-------CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~enI~fg~~~-------~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++. .|++||+.++... ++++.+++++.+++.+. ......+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL-----------EKRLPGELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHH
Confidence 3799999998876 5999999876431 12233444554444322 23455689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcc
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1458)
||||++.+|+++||||||++||+++...+.+ .+..+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999887765 455443 37899999999999876 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=316.88 Aligned_cols=198 Identities=22% Similarity=0.324 Sum_probs=162.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|+++.|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHH
Confidence 3789999999963 357899 99999999999999999999999999999999999986 6655
Q ss_pred -----EEEEEcCCCCCCCC-cHHHHHhcCCCCC---------------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 -----KKAYVPQSSWIQTG-TIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 -----~~ayv~Q~~~i~~~-Ti~enI~fg~~~~---------------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
.++|++|++.++.+ |++||+.++...+ +++.++.++..++ ........
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~ 141 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLA 141 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCCh
Confidence 27999999988765 9999998864311 1111222222222 22345677
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||++++++. ||+|++|++|++
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 8999999999999999999999999999999999999877765 56655567999999999999875 999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
++.|+++++..
T Consensus 221 ~~~~~~~~~~~ 231 (242)
T TIGR03411 221 LAEGSLDQVQA 231 (242)
T ss_pred EeeCCHHHHhc
Confidence 99999888754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=312.71 Aligned_cols=191 Identities=30% Similarity=0.377 Sum_probs=153.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 67899999996420 12468899 99999999999999999999999999999999999986 5654
Q ss_pred -------EEEEEcCCCCCCC-CcHHHHHhcCCC---CCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 -------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++|++|++.++. .|++||+.++.. ++.. +..+.++.+++. ........+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHH
Confidence 3799999988774 699999987432 2211 222333333332 2234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEeCCeEE
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~ 798 (1458)
||||++||||++.+|+++||||||++||+++...+.+ ++..+. .++|+|++||+++++..+|+|++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999887765 455443 378999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.94 Aligned_cols=198 Identities=28% Similarity=0.396 Sum_probs=161.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1458)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 358899 99999999999999999999999999999999999986 5443
Q ss_pred ------------EEEEEcCCCCCCC-CcHHHHHhcCC----CCCHH----HHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 ------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~-~Ti~enI~fg~----~~~~~----~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
.++|++|++.++. .|++||+.++. ..+.+ +.++.++..++. ...+...
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 3799999998764 69999998752 11111 122223322222 1234567
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCe
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1458)
.+||||||||++||||+..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++++.. ||+|++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999887765 455443 48999999999999875 99999999999
Q ss_pred EEEcccchhhhh
Q 000505 797 IEQSGKYEDLIA 808 (1458)
Q Consensus 797 i~~~g~~~~l~~ 808 (1458)
+++.|+.+++.+
T Consensus 222 i~~~~~~~~~~~ 233 (250)
T PRK11264 222 IVEQGPAKALFA 233 (250)
T ss_pred EEEeCCHHHHhc
Confidence 999999888765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=324.90 Aligned_cols=205 Identities=25% Similarity=0.364 Sum_probs=161.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+.... ...+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~~l~i~nl~~~~~~~~~---~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP---FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCc---cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccccc
Confidence 35899999999964300 01358999 99999999999999999999999999999999999986 5544
Q ss_pred ----------EEEEEcCCCC--CCCCcHHHHHhcCCCC---CHHH-HH---HHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 ----------KKAYVPQSSW--IQTGTIRENILFGKDM---RQSF-YE---EVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 ----------~~ayv~Q~~~--i~~~Ti~enI~fg~~~---~~~~-y~---~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|+|. ++..|++||+.|+... ..+. .+ ++++..++. . ...+....+
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~---~~~~~~~~~ 150 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP-------E---DYVKRSPFE 150 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC-------h---hHhcCChhh
Confidence 3799999984 5667999999986431 1111 11 222222221 1 123466789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999877765 455443 37999999999998764 999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
++.|+.+++..
T Consensus 230 ~~~g~~~~~~~ 240 (289)
T PRK13645 230 ISIGSPFEIFS 240 (289)
T ss_pred EEeCCHHHHhc
Confidence 99999888754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=316.67 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=163.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|..++ ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4789999999963 357899 999999999999999999999999999998753 68986 5554
Q ss_pred -----------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCC
Q 000505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~ 720 (1458)
.++|++|++.++..|++||+.++... .. ++.++.++.+++..++. ...+..+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 37999999988789999999986421 11 12222333333332221 234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeEEE
Q 000505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1458)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1458)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877754 56665568999999999998865 99999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999888764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=318.43 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=166.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1458)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+ |++|++ .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 36899999999963 367999 99999999999999999999999999999875 378976 5544
Q ss_pred ------------EEEEEcCCCCCCCCcHHHHHhcCCCCC------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCC
Q 000505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~enI~fg~~~~------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~L 721 (1458)
.++|++|++.+++.|++||+.++.... +++.+++++.+++..++.. ..+..+.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccC
Confidence 379999999988789999999864321 1223334444444433321 235677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEe-------
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1458)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~------- 793 (1458)
|||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999887755 56666567899999999999875 99999998
Q ss_pred --CCeEEEcccchhhhh
Q 000505 794 --DGKIEQSGKYEDLIA 808 (1458)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1458)
+|++++.|+.+++..
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999865
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=314.07 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=160.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468899999863 368899 99999999999999999999999999999999999986 6654
Q ss_pred ----EEEEEcCCCCCCCC-cHHHHHhcCCCCC----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHH
Q 000505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~enI~fg~~~~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1458)
.++|++|++.++.. |++||+.++.... .+.++++++... +.....+....+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHH
Confidence 37999999987764 9999998764321 112233332222 1111234667799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhcc-CCEEEEEeCCeEEEcccchhhh
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 807 (1458)
||||++.+|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++++.. ||+|+++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGR-VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999887765 454443 27899999999999885 9999999999999999988873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=318.14 Aligned_cols=197 Identities=25% Similarity=0.409 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 368999 99999999999999999999999999999999999986 6665
Q ss_pred ---EEEEEcCCCCCCCC-cHHHHHhcCCC-----C---CH---HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChH
Q 000505 660 ---KKAYVPQSSWIQTG-TIRENILFGKD-----M---RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 ---~~ayv~Q~~~i~~~-Ti~enI~fg~~-----~---~~---~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGG 724 (1458)
.++|++|++.++.. |+.||+.++.. + .+ ++.+++++.+++.+ ........||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHH
Confidence 27999999877654 99999998631 1 11 12233333333322 234567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCeEEEccc
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1458)
||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|++...|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 9999999999999999999999999999999877765 454443 47999999999999865 99999999999999999
Q ss_pred chhhhh
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~~l~~ 808 (1458)
++++..
T Consensus 222 ~~~~~~ 227 (255)
T PRK11231 222 PEEVMT 227 (255)
T ss_pred HHHhcC
Confidence 888754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=320.70 Aligned_cols=201 Identities=27% Similarity=0.445 Sum_probs=164.3
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1458)
..++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999632 2468999 99999999999999999999999999999999999986 6655
Q ss_pred -----EEEEEcCCCC--CCCCcHHHHHhcCCC---CCHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 -----~~ayv~Q~~~--i~~~Ti~enI~fg~~---~~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|+|. +++.|++||+.++.. ++.+. .+++++..++.+ .......+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHH
Confidence 3699999983 567899999998632 22222 233334444432 2345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhccCCEEEEEeCCeEEEcccc
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1458)
|||++||||++.+|+++||||||++||+.+.+.+++ .+..+. + ++|+|++||+++.+..||+|++|++|++.+.|+.
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999888776 454443 3 4899999999998878999999999999999988
Q ss_pred hhhhh
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~~l~~ 808 (1458)
+++..
T Consensus 227 ~~~~~ 231 (271)
T PRK13632 227 KEILN 231 (271)
T ss_pred HHHhc
Confidence 87754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=317.95 Aligned_cols=198 Identities=19% Similarity=0.339 Sum_probs=161.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1458)
.++++|+++.|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|.
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999953 368999 99999999999999999999999999999999999986 66652
Q ss_pred ------EEEEcCCCCCCC-CcHHHHHhcCCCC----------------CH------HHHHHHHHHhhhhhhHHhhcCCCc
Q 000505 661 ------KAYVPQSSWIQT-GTIRENILFGKDM----------------RQ------SFYEEVLEGCALNQDIEMWADGDL 711 (1458)
Q Consensus 661 ------~ayv~Q~~~i~~-~Ti~enI~fg~~~----------------~~------~~y~~vl~~c~l~~dl~~l~~gd~ 711 (1458)
++|++|++.++. .|++||+.++... ++ ++.++.++..++ .
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------L 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------h
Confidence 688999998876 5999999986310 00 011111222221 2
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhcc-CCE
Q 000505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADL 788 (1458)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~ 788 (1458)
...+.+..+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++++.. ||+
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 23456778999999999999999999999999999999999999887765 454443 3 7899999999999865 999
Q ss_pred EEEEeCCeEEEcccchhhhh
Q 000505 789 VLVMKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 789 i~~l~~G~i~~~g~~~~l~~ 808 (1458)
+++|++|++++.|+.+++..
T Consensus 224 i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 224 IYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEEECCeEEecCCHHHHhh
Confidence 99999999999999887754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=317.49 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=162.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1458)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1458)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4789999999963 358999 999999999999999999999999999999987 48986 5544
Q ss_pred -----------EEEEEcCCCCCCC-CcHHHHHhcCCCC-----CHHH----HHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM-----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 -----------~~ayv~Q~~~i~~-~Ti~enI~fg~~~-----~~~~----y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
.++|++|++.++. .|++||+.++... ..+. .+++++..++..++. ...+...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 3799999998875 5999999875321 1111 122233223222111 1245677
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
.+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887765 45555557999999999999765 999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
++.|+.+++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999988765
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.92 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=151.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6789999999522 368999 99999999999999999999999999999999999986 5554
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+. ......+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 3799999998875 699999987632 11 1233344444444322 233456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCcEEEEEecccchhcc-CCEEEEEeCCe
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1458)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++.. ||+|++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999887766 444443 58999999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=313.66 Aligned_cols=195 Identities=31% Similarity=0.428 Sum_probs=153.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+... ...+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 5554
Q ss_pred ------EEEEEcCCCC--C-CCCcHHHHHhcCCCC-----CHHHHH----HHHHHhhhhhhHHhhcCCCcccccCCCCCC
Q 000505 660 ------KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 660 ------~~ayv~Q~~~--i-~~~Ti~enI~fg~~~-----~~~~y~----~vl~~c~l~~dl~~l~~gd~t~ig~~g~~L 721 (1458)
.++|++|++. + ...|++||+.++... ++...+ +.++..++. ....+....+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 3799999983 3 357999999865211 111111 122222221 12345677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-C-CcEEEEEecccchhc-cCCEEEEEeCCeEE
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1458)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~ 798 (1458)
|||||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. + ++|+|++||+++.+. .||+|++|++|+++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD-LLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999999999999999999777765 455443 3 799999999999987 59999999999998
Q ss_pred Ecc
Q 000505 799 QSG 801 (1458)
Q Consensus 799 ~~g 801 (1458)
..|
T Consensus 226 ~~g 228 (228)
T cd03257 226 EEG 228 (228)
T ss_pred ecC
Confidence 654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=311.45 Aligned_cols=187 Identities=28% Similarity=0.390 Sum_probs=151.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1458)
++++|++++|+.. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4688999998632 357899 99999999999999999999999999999999999986 6655
Q ss_pred ------EEEEEcCCCCCCC-CcHHHHHhcCCCC---CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHH
Q 000505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 725 (1458)
.++|++|++.++. .|++||+.++... .. ++.++.++.+++.+. ......+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHH
Confidence 3799999998776 5999999886321 11 122334444444322 234556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
|||++||||++.+|+++||||||++||+++.+.+.+ .+..+ .+++|+|++||+++++.. ||+|++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887765 45444 358999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=312.05 Aligned_cols=197 Identities=24% Similarity=0.376 Sum_probs=159.4
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1458)
+..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~ 75 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLK 75 (225)
T ss_pred CceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCC
Confidence 346899999999853 358899 99999999999999999999999999999999999987 6665
Q ss_pred ------EEEEEcCCCCCCCCcHHHHHhcCCCC-----CHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 660 ------KKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 660 ------~~ayv~Q~~~i~~~Ti~enI~fg~~~-----~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
.++|++|++.+++.|++||+.++..+ ++++.++.++..++.. +..+..+.+||||||||
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQR 145 (225)
T ss_pred HHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHH
Confidence 37999999999888999999875321 1122233333333321 23456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhccCCEEEEEe-CCeEEEcccch
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1458)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~-~G~i~~~g~~~ 804 (1458)
++||||++++|+++||||||++||+.+...+.+ ++..+. .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998776654 555543 3789999999999998899999995 66667777764
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=296.87 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=142.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEcCC
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--~~ayv~Q~ 667 (1458)
++++|++++|+.. .+.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++| .++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4688999999632 358899 99999999999999999999999999999999999997 7876 79999999
Q ss_pred CCCCCCcHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000505 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1458)
Q Consensus 668 ~~i~~~Ti~enI~fg~~~~~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep 747 (1458)
+.+++.|++||+.++ ...+||||||||++||||++++|+++|||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 998889999999764 2468999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhccCCEEEEEeCC
Q 000505 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1458)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G 795 (1458)
|++||+++.+.+.+ .+... ++|+|++||+.++...||+|++|++|
T Consensus 119 t~~LD~~~~~~l~~-~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLYQ-LLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHHH-HHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999887765 44443 68999999999887779999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=316.24 Aligned_cols=197 Identities=26% Similarity=0.437 Sum_probs=162.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1458)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 788999999863 358999 99999999999999999999999999999999999986 66662
Q ss_pred ----EEEEcCCCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhhhhhhHHhhcCCCcccccCCCCCCChHHHHH
Q 000505 661 ----KAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 661 ----~ayv~Q~~~i-~~~Ti~enI~fg~~~~-------~~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 728 (1458)
++|++|++.+ ++.|++||+.++.... +++.++.++..++.. .......+||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHH
Confidence 6999999877 6789999998864211 122233344333322 2345667999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCcEEEEEecccchhc-cCCEEEEEeCCeEEE
Q 000505 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1458)
Q Consensus 729 v~LARAl~------~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1458)
++||||++ .+|+++||||||++||+.+...+.+ ++..+. .++|||++||+++++. .||+|++|++|++++
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999 5999999999999999999877765 555543 4799999999999987 599999999999999
Q ss_pred cccchhhhh
Q 000505 800 SGKYEDLIA 808 (1458)
Q Consensus 800 ~g~~~~l~~ 808 (1458)
.|+++++..
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 999888764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=319.91 Aligned_cols=204 Identities=27% Similarity=0.404 Sum_probs=165.6
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-cEEeeCCcEEEEEccCCCChhHHHHHHhCCccC-----CCCcEEEECC--
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1458)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g-- 659 (1458)
...++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..++ ++|++ .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 346899999999953 358999 999999999999999999999999999999873 78986 5543
Q ss_pred -------------EEEEEcCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhhhhhhHHhhcCCCcccccCCC
Q 000505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1458)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~vl~~c~l~~dl~~l~~gd~t~ig~~g 718 (1458)
.++|++|++.++..|++||+.++... .+ ++.+++++..++.+++. +..+.++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 47999999998888999999876321 11 12233334334432222 2346778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCcEEEEEecccchhcc-CCEEEEEeCCeE
Q 000505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1458)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1458)
.+|||||||||+||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999998777654 56555567899999999999764 999999999999
Q ss_pred EEcccchhhhh
Q 000505 798 EQSGKYEDLIA 808 (1458)
Q Consensus 798 ~~~g~~~~l~~ 808 (1458)
++.|+.+++..
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1458 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 8e-45 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-09 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-36 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-30 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-29 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-29 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-28 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-28 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-28 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 9e-28 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-27 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-27 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-27 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-27 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-26 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-25 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-25 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-25 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-24 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-24 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-24 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-24 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-24 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-24 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-24 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-24 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-24 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-23 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-23 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 9e-22 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-21 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-15 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-14 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-07 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 1e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 436 bits (1122), Expect = e-141
Identities = 91/251 (36%), Positives = 143/251 (56%), Gaps = 1/251 (0%)
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
+ + WPS G++ +++L +Y +L+ I+ + +++G++GRTGSGKSTL+
Sbjct: 5 NSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
A R++ G I IDGV I L+ R +IPQ +F GT R NLDP HSDQ
Sbjct: 65 SAFLRLLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372
EIW+V ++ L ++ Q LD + + G S G +QL+CLAR +L K +IL+LDE +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
A +D T +I++T+++ + CTVI RI +++ D LV++E KV +YDS +L
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 1433 NSSSFSKLVAE 1443
+ F
Sbjct: 244 PADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 23/255 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKVHG------KKAYVPQ 666
I G +V + G GSGKS+LLS+ L GEI +I G + +PQ
Sbjct: 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI-QIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLS 722
+I +GT R+N+ D + ++ V + L IE + V+ + G LS
Sbjct: 102 KVFIFSGTFRKNL----DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
G KQ + LAR+V S + + + D+P + +D T + ++ L + TV+ ++E
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCEARIEA 216
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPC 842
+ D LV+++ K+ Q +L V K + + + +V
Sbjct: 217 MLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM-NFLPVKVTATAIDQVQV 275
Query: 843 QMSQITEERFARPIS 857
++ ++ P+
Sbjct: 276 ELPMPNRQQVWLPVE 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-116
Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 7/289 (2%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
+ T+V + + F +E + + ++ ++ P +K +
Sbjct: 1 STTEVVMENVTAFWEEGFGELF-EKAKQNNNNRKTSNGDDSLSFS-NFSLLGTPVLKDIN 58
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
KI +G +AV GS G+GK+SLL I+GE+ G IK G+ ++ Q+SWI GTI+
Sbjct: 59 -FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQNSWIMPGTIK 116
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
ENI+ G + Y V++ C L +DI +A+ D V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 ENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 175
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMS 845
G + +L + ++ S DQ + + + L+ + S
Sbjct: 236 SYFYGTFSELQN-LRPDFSSKLMGC-DSFDQFSAERRNSILTETLHRFS 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 40/296 (13%)
Query: 1173 MISVERILQF--TNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITC 1230
+ +E + F +N+ + N + P L K I
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL----KDINF 59
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290
+ + V G TG+GK++L+ + +EPS G+I G R+S Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 1291 DPMLFQGTVRTNLDPLEQHSDQEI-WEVINKCHLAEIVRQDQRLLDA----PVAEDGENW 1345
+ + GT++ N+ + D+ VI C L +D + E G
Sbjct: 107 NSWIMPGTIKENI--IGVSYDEYRYRSVIKACQL----EEDISKFAEKDNIVLGEGGITL 160
Query: 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTAT-----DNVIQQTIREETSRCTVITVA 1400
S GQR + LAR + K + +LD +D T ++ + + + + T I V
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK----TRILVT 216
Query: 1401 HRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRD 1456
++ + D +L+L EG Y + +L FS + S R+
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFSAERRN 271
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-114
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 9/242 (3%)
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649
+I + + W + PT+ I +G+ VAV G VG GKSSLLS++L E+ +
Sbjct: 3 SITVRNATFTWARSD----PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
+ G + + G AYVPQ +WIQ ++RENILFG + + +Y V++ CAL D+E+ G
Sbjct: 58 VEGH-VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGL 767
D + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+ + G+
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQ 827
L KT + TH + +L D+++VM GKI + G Y++L+A ++ ++ +
Sbjct: 177 LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYASHHHH 235
Query: 828 VN 829
+
Sbjct: 236 HH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 35/259 (13%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I + N + + P L GIT + P + VVG+ G GKS+L+ AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCH 1322
+ I G ++ +PQ + ++R N+ LE+ VI C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACA 105
Query: 1323 LAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
L D +L + + E G N S GQ+Q V LAR + I + D+ +++D
Sbjct: 106 L----LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 1379 T-----DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+NVI + T I V H + + D+++V+ GK+ E S ++LL +
Sbjct: 162 VGKHIFENVIGP--KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD 219
Query: 1434 SSSFSKLVAEFLRRTSKSN 1452
+F++ + + +
Sbjct: 220 -GAFAEFLRTYASHHHHHH 237
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 354 bits (912), Expect = e-113
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 7/234 (2%)
Query: 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646
+ + +E W+ P +K + KI +G +AV GS G+GK+SLL I+GE
Sbjct: 3 TTTEVVMENVTAFWEEGGT----PVLKDIN-FKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
Query: 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706
+ G IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +
Sbjct: 58 LEPSEGK-IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
A+ D V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L++ KT + T ++E L AD +L++ +G G + +L + ++
Sbjct: 177 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 36/251 (14%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
++ ++ +EN+ + VLK I + + V G TG+GK++L+ + +EPS
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1320
G+I G R+S Q + GT++ N+ ++ VI
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDE---YRYRSVIKA 106
Query: 1321 CHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
C L +D + E G S GQR + LAR + K + +LD +D
Sbjct: 107 CQL----EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Query: 1377 TAT-----DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
T ++ + + + + T I V ++ + D +L+L EG Y + +L
Sbjct: 163 VLTEKEIFESCVCKLMANK----TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
Query: 1432 DNSSSFSKLVA 1442
SKL+
Sbjct: 219 LQPDFSSKLMG 229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 350 bits (901), Expect = e-100
Identities = 233/1187 (19%), Positives = 448/1187 (37%), Gaps = 134/1187 (11%)
Query: 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDV--------ERIGDFF 389
W A R ++R I + + F G + + DV ++IG FF
Sbjct: 132 WCLAAGRQIHKIRQKFFHAIMNQEIG-WFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+ F +I + G L + + +S A F + A
Sbjct: 191 QAM-------ATFFGGFIIGFT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 450 KDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWAS 508
E L ++R + +++ L++ L E +R +KK + ++ F
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAF-LL 301
Query: 509 PTLVSVITF--GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRI 566
+ F G +++ + G VL+ + I + I A + + Y +
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK---KPTIKLTDK--MKIM 621
+ I ++ K ++ ++E + +F + +++ +K+
Sbjct: 362 FKIIDNKPSIDSFSKSGHKPDNIQGNLEF-------KNIHFSYPSRKEVQILKGLNLKVK 414
Query: 622 KGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSS 668
G VA+ G+ G GKS+ + + G + I G I+ + V Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI ENI +G++ +E+ + N I ++VGERG LSGGQ
Sbjct: 474 VLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
KQRI +ARA+ N + + D+ SA+D + + + L +T + H+L +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQVNPPQEDKCLSR--- 839
AD++ G I + G +++L+ ++ +LV Q + L +D+ +
Sbjct: 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMS 650
Query: 840 VPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL- 898
S + R R CG + E S + L P ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVG 710
Query: 899 --CQVLFQALQMGSNYWIAWA--------TDEKRKVSREQLIGVFIFLSGGSSFFILGRA 948
C ++ LQ + + E ++ + +F+ L S +
Sbjct: 711 IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG 770
Query: 949 VLLATIAIKTAQRLFLNMITSVFRAPISFFDST--PSSRILNRCSTDQSTVDTDIPYRLA 1006
+RL + S+ R +S+FD + + R + D + V RLA
Sbjct: 771 FTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830
Query: 1007 GLAFALIQLLSIIILMSQAAWQ---VFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063
+ + L + II+ WQ + + I+ I+ + ++ +
Sbjct: 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890
Query: 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD---------------YSCVTFHNCG 1108
I +E+I T+ +E +F + +S
Sbjct: 891 KIA---TEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947
Query: 1109 TMEWLCLR--INLLFN-----FAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAW 1161
+ R L+ LV +V + + +A
Sbjct: 948 SY-AAAFRFGAYLVTQQLMTFENVLLVFSAIVF--------GAMAVGQVSSFAPDYAKA- 997
Query: 1162 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS--GKIELENLLVQYNP 1219
+S I++ E I + P+ G ++ ++ Y P
Sbjct: 998 -----------TVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNVQFSGVVFNY-P 1041
Query: 1220 TLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277
T P VL+G++ + + +VG +G GKST++Q L R +P G + +DG +I +
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1334
+Q LR++L I+ Q+P+LF ++ N+ D S +EI + ++ + +
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 1335 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC 1394
+ V + G S GQ+Q + +AR L+++ IL+LDEAT+++DT ++ V+Q+ + +
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGR 1221
Query: 1395 TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
T I +AHR+ T+ + DL++V+ GKV E+ + +QLL + +V
Sbjct: 1222 TCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMV 1267
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-56
Identities = 105/535 (19%), Positives = 211/535 (39%), Gaps = 52/535 (9%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
+ + G + A + ++ ++ I +FD + R +
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQ-------VFPLFLVILGISIWYQA 1045
D S ++ I ++ A+ I+ W+ + P+ + GI +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1046 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105
+ G E +A T+ F + + L R ++ +++ +
Sbjct: 234 SFTDKELHAYAKAGA-------VAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI- 285
Query: 1106 NCGTMEWLCLRINLLFNFAFFLVLIILVT--------LPRSAIDPS------LAGLAATY 1151
+ N+ AF L+ + + L +
Sbjct: 286 ------KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAF 339
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS--GKIE 1209
+ N+ N + + + + I + S P + G +E
Sbjct: 340 SVGQ------ASPNIEAFANARGAAYEVFKIIDNKPS----IDSFSKSGHKPDNIQGNLE 389
Query: 1210 LENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+N+ Y P+ +LKG+ + + +VG +G GKST +Q + R+ +P G +
Sbjct: 390 FKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP-LEQHSDQEIWEVINKCHLAEI 1326
IDG DI I ++ LR + ++ Q+P+LF T+ N+ E + EI + + + + +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386
+ + D V E G S GQ+Q + +AR L++ +IL+LDEAT+++DT ++ V+Q
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+ + T I +AHR+ TV + D++ D G ++E + +L+ + + KLV
Sbjct: 569 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLV 622
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-31
Identities = 117/603 (19%), Positives = 238/603 (39%), Gaps = 85/603 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVS-FLSGKHDHSSYHYGLVLASVFLFAKTVES 332
W + A +N + + V F +G + + + +FL +
Sbjct: 704 WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763
Query: 333 LTQ--RQWYFG--ANRIGIRVRSALTVLIYKRSMAIKFAGP--SSGIIINMINVDVERIG 386
+T + + FG + R+R + + ++ ++ F P ++G + + D ++
Sbjct: 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW-FDDPKNTTGALTTRLANDAAQVK 822
Query: 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA-------LFSTIFVMVSNTPLANRQ 439
R+ ++ Q L G + L + + ++ + +
Sbjct: 823 G--ATGSRLAVI-FQNIANLGT-----GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM 874
Query: 440 E-RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYT 497
+ + K +E +++ R + L+ EQ+F + L+ R+++KK
Sbjct: 875 LSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934
Query: 498 -----------CSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVLSALA-TFRILQ 543
+ A F LV+ ++TF +L V SA+ +
Sbjct: 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL---------VFSAIVFGAMAVG 985
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
+ P+ A+ VS I I++ + + K + + +++
Sbjct: 986 QVSSFAPD----YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF-------S 1034
Query: 604 EENFKKPT----IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRIS 651
F PT L +++ KG +A+ GS G GKS+++ + G + +
Sbjct: 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLD 1093
Query: 652 GAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQD 702
G IK + + V Q + +I ENI +G + R YEE++ +Q
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
I+ D + VG++G LSGGQKQRI +ARA+ + + D+ SA+D + + ++
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMK 819
L +T + H+L + ADL++V+++GK+++ G ++ L+A + +V Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Query: 820 AHR 822
A R
Sbjct: 1273 AKR 1275
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 4e-73
Identities = 117/570 (20%), Positives = 236/570 (41%), Gaps = 23/570 (4%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + + +K L+ V + +L A + D+ + +
Sbjct: 10 WQTFRRLWPTIAPFKAGLI-VAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
V I L + ++ ++ K + + + P++FFD + +L+R
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050
+ D V + L + ++ + I+M +WQ+ + +V+ I
Sbjct: 129 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 188
Query: 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110
R +++ + + + + G + F + R + +
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNV 1169
I L+ + A L ++ S +D AG + + + +++ + +L NV
Sbjct: 249 SISDPIIQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP--LKSLTNV 304
Query: 1170 ENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVL 1225
+ M + + + + E K+ ++G +E N+ Y L
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQE-----KDEGKRVIDRATGDLEFRNVTFTYPGREVPAL 359
Query: 1226 KGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
+ I P K + +VGR+GSGKST+ + R + G IL+DG D+ L LR+++
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1286 SIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
+++ Q+ LF TV N E++S ++I E + + + + LD + E+G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
S GQRQ + +AR LL+ IL+LDEAT+++DT ++ IQ + E T + +AHR+
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 1404 PTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
T+ D ++V+++G ++E + +LL +
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-38
Identities = 104/559 (18%), Positives = 224/559 (40%), Gaps = 39/559 (6%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S + ++ + + + S
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
+ + + +V + ++ M + F S+G +++ I D E++
Sbjct: 84 IS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 140
Query: 391 Y-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ + + ++ Y + + L + + + + +++ R S M+
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIR---VVSKRFRSISKNMQ 197
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL--F 505
++ + LK + + + ++ K+ ++ R K + S +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 506 WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR 565
AS L V+ + LT+G + ++ L P+ +L + + + +
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 566 IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ + + +K +A+ ++ + + RE P ++ + +KI G
Sbjct: 318 LFAILDSEQEKDEGKRVIDRATG-DLEFRNVTFTYPGRE----VPALRNIN-LKIPAGKT 371
Query: 626 VAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQT 672
VA+ G GSGKS++ S I G I + G ++ + A V Q+ +
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQKQRI 729
T+ NI + + S E++ E + I +G +++GE G+ LSGGQ+QRI
Sbjct: 431 DTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ +S + I D+ SA+D + + L L +T L H+L ++ AD +
Sbjct: 490 AIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADEI 548
Query: 790 LVMKDGKIEQSGKYEDLIA 808
+V++DG I + G + +L+A
Sbjct: 549 VVVEDGIIVERGTHSELLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 2e-72
Identities = 115/570 (20%), Positives = 237/570 (41%), Gaps = 23/570 (4%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + T + YK LV + V+ A + DE L
Sbjct: 10 WQTFKRLWTYIRLYKAGLVVSTI-ALVINAAADTYMISLLKPLLDEGFGNAESNFLRILP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
+ + L + L+ ++ ++ + P+ FFD + +L+R
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050
+ D V L + ++ ++ LM +WQ+ + +V+ + + ++
Sbjct: 129 TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKR 188
Query: 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110
R+++R + T + + + G + + + R + + T
Sbjct: 189 FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248
Query: 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNV 1169
I ++ + A L ++ + S G + +++ + L +V
Sbjct: 249 SIADPVIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP--LKALTSV 304
Query: 1170 ENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVL 1225
++ M + + + ++ +E N + E +G+++++++ Y L
Sbjct: 305 TSEFQRGMAACQTLFGLMDLETE----RDNGKYEAE-RVNGEVDVKDVTFTYQGKEKPAL 359
Query: 1226 KGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
++ + P K + +VGR+GSGKST+ R + G I +DG D+ L +LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 1286 SIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
+++ Q+ LF T+ N +++ ++I + + H E + + LD + E+G
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479
Query: 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403
+ S GQRQ V +AR LL+ +L+LDEAT+++DT ++ IQ + E TV+ +AHR+
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 1404 PTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
T+ D +LV+DEG+++E LL +
Sbjct: 540 STIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 5e-39
Identities = 108/563 (19%), Positives = 222/563 (39%), Gaps = 47/563 (8%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L ++ +N A L+ + G + + + +F + +
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGF 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
Y + + V + ++ M + F S+G +++ I D E++
Sbjct: 84 ASS--YC-LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATS 140
Query: 391 Y-IHRIWLLPVQ-VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ I + L ++ + + + + + +S +++ R S M+
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS---FVSKRFRKISRNMQ 197
Query: 449 AKDARIKAT-SETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF---L 504
+ ++ + LK +V+ ++ K+ ++ R K L + +IA
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK-LVSAQSIADPVIQ 256
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
AS L +V+ ++ LT G + L P+ L + S + +
Sbjct: 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGS 624
+ + + ++ + + +D++ + + +E KP + I +G
Sbjct: 317 TLFGLMDLETERDNGKYEAERVNG-EVDVKDVTFTYQGKE----KPALSHVS-FSIPQGK 370
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK-------------AYVPQSS 668
VA+ G GSGKS++ + L R + +I + G A V Q+
Sbjct: 371 TVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI NI + + + E++ + + IE G +V+GE G +LSGGQ
Sbjct: 427 HLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+QR+ +ARA+ ++ V I D+ SA+D + + L L KTVL H+L ++
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
Query: 786 ADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV+ +G+I + G++ DL+A
Sbjct: 545 ADEILVVDEGEIIERGRHADLLA 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 3e-69
Identities = 119/579 (20%), Positives = 237/579 (40%), Gaps = 57/579 (9%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLIGVFIFLSGGSSFF 943
YK + ++ ++ + M I +A D + E++ + I + F
Sbjct: 12 YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIF 70
Query: 944 ILGRAVLLAT---IAIKTAQRLFLNMITSVF----RAPISFFDSTPSSRILNRCSTDQST 996
++ R + +A T+ ++ ++ ++ F+ + ++++R D
Sbjct: 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ 130
Query: 997 VDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056
I L + I ++ + +M ++ L I I + R+L R
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116
A + E + G + ++ F E+ ++ + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 1117 INLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV---------IWNL 1166
IN + + +V+ + A G + + L A+V + L
Sbjct: 251 INTVTDIGPIIVIG-------------VGAYLAISGSITVGTLAAFVGYLELLFGPLRRL 297
Query: 1167 CNVENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTL 1221
S++R+ Q + + IKN + G+I+++++ QYN
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYD----IKNGVGAQPIEIKQGRIDIDHVSFQYNDNE 353
Query: 1222 PMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280
+LK I + GE + VG +G GKSTLI + R + + G+ILIDG +I
Sbjct: 354 APILKDINLSIEKGET-VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 412
Query: 1281 LRSRLSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWEVINKCHLAE-IVRQDQRLL 1334
LR+++ ++ QD +LF TV+ N +D+E+ E + + I+ Q
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAAKMANAHDFIMNLPQG-Y 467
Query: 1335 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC 1394
D V E G S GQ+Q + +AR+ L IL+LDEAT+++D ++++IQ+ + +
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527
Query: 1395 TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
T + VAHR+ T+ D ++V++ G ++E + R+L+
Sbjct: 528 TTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 9e-37
Identities = 125/582 (21%), Positives = 232/582 (39%), Gaps = 77/582 (13%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD----HSSYHYGLVLASVFLFAKT 329
+ + + P LI + + H +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQR-QWYFGANRIGIRVRSALTVLIYKR--SMAIK-FAGPSSGIIINMINVDVERI 385
V + + Y ++ + +Y +++ + +A G +I+ + DVE+
Sbjct: 73 VRPPIEFIRQYLA-QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 386 GDFFLY-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFH 443
DF L + IWL + + +AL I + ++ A + + + R
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLT---LAALFIFPFYILTVYVFFGRLRKL 188
Query: 444 SMIMEAKDARIKAT-SETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTC 498
+ A ++ E ++ + V+K + E + F KK + Y+
Sbjct: 189 TRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSF 248
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
+AI + + VI G + + +T G + + + +L P+ L + + Q
Sbjct: 249 AAINTV--TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 559 TKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE---------YAWDAREENFKK 609
+ S+ R+ + I ED + + I+I+ G Y + +
Sbjct: 307 SFASMDRVFQLIDED------YDIKNGVGAQPIEIKQGRIDIDHVSFQY------NDNEA 354
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----- 661
P +K + + I KG VA G G GKS+L++ L IPR ++ I + G
Sbjct: 355 PILKDIN-LSIEKGETVAFVGMSGGGKSTLIN--L--IPRFYDVTSGQILIDGHNIKDFL 409
Query: 662 --------AYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMW 706
V Q + + + T++ENIL G+ D EEV+E N I
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD------EEVVEAAKMANAHDFIMNL 463
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
G + VGERG+ LSGGQKQR+ +AR +N + I D+ SA+D + + ++ L
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEALDV 522
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L +T L H+L + AD ++V+++G I ++G + +LIA
Sbjct: 523 LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 1e-66
Identities = 142/602 (23%), Positives = 259/602 (43%), Gaps = 85/602 (14%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE---KRKVSR-EQLIGVFIFLSGGSSFF 943
+ L+ V + + L + S Y I D R+ + + + + +S
Sbjct: 35 HTFTLIMVFVFV-TVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLL 93
Query: 944 ILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
+ ++ T++ RL + + R P+ FFD TP I++R D ++ +
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGN 153
Query: 1004 RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY--------QAYYITTARELA 1055
+ ++ L +I+M + + + L I+ +++ + Y+ R L
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213
Query: 1056 RMVGTRKAPILHHFSESIAGATTIRCFNQEN----RFLLRSHSLIDDYSCVTFHNCGTME 1111
++ G E I+G T I+ F +E +F + SL + + G +
Sbjct: 214 QLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS-GVLP 264
Query: 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV-------- 1162
L +N++ N F L+ G A + + + ++
Sbjct: 265 PL---MNMVNNLGFALISGF-------------GGWLALKDIITVGTIATFIGYSRQFTR 308
Query: 1163 -IWNLCNVENKMIS----VERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQY 1217
+ L N N + ERI + ++ E + G+IE +N+ Y
Sbjct: 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELREVRGEIEFKNVWFSY 364
Query: 1218 NPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276
+ P VLK IT PG+K + +VG TGSGK+T++ L R + G+IL+DG+DI I
Sbjct: 365 DKKKP-VLKDITFHIKPGQK-VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 1277 GLQDLRSRLSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331
LRS + I+ QD +LF TV+ N +D+EI E H ++
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA----TDEEIKEAAKLTHSDHFIK--- 475
Query: 1332 RL---LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388
L + + ++GE+ S GQRQL+ + R L +IL+LDEAT+++DT T+ IQ +
Sbjct: 476 HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
Query: 1389 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN-------SSSFSKLV 1441
+ T I +AHR+ T+ + DL++VL +G+++E +L++ +S + +V
Sbjct: 536 KLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVV 595
Query: 1442 AE 1443
+
Sbjct: 596 EK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 122/569 (21%), Positives = 243/569 (42%), Gaps = 60/569 (10%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
+L + F V++I + P+LI + + +++ ++
Sbjct: 36 TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFW 95
Query: 334 TQRQWYFG-ANRIGIRVRSALTVLIYKRSMAIKFAGPSSG-IIINMINVDVERIGDFFL- 390
Q + + + R+R L + + + F G II +IN DV+ I +
Sbjct: 96 LQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF-FDRTPHGDIISRVIN-DVDNINNVLGN 153
Query: 391 YIHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANR-QERFHSMIME 448
I + + V + A+++ N+ + L ++ ++++ ++ F+ +
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILS--LVTLSIVPLTVLITQIVSSQTRKYFYEN--Q 209
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507
++ E + + V+KL + E++ ++K R+ E SL+K + +
Sbjct: 210 RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE----SLRKVGTKAQIFSGVLPP 265
Query: 508 SPTLVSVITF-GVCIL-----LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561
+V+ + F + LK +T G + + + R P+ L +MI
Sbjct: 266 LMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 562 SLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKI 620
S RI E + + +K + I+ + +++D KKP +K D I
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK-----KKPVLK--DITFHI 378
Query: 621 MKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQS 667
G KVA+ G GSGK+++++ ++ G+I + G I+ + V Q
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 668 SWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMWADGDLSVVGERGIN 720
+ + + T++EN+ +G D EE+ E + D I+ +G +V+ + G +
Sbjct: 438 TILFSTTVKENLKYGNPGATD------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQ 779
LS GQ+Q + + RA +N + I D+ S VD T T Q M L+ KT + H+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD--TKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + ADL++V++DG+I + GK+++LI
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 7e-59
Identities = 78/265 (29%), Positives = 133/265 (50%), Gaps = 11/265 (4%)
Query: 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCT 1231
I +E + +E +K+ + G+IE EN+ Y L+ ++ T
Sbjct: 22 FIDMENMFDLLKEETE----VKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFT 76
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
+ + +VG +G+GKST+++ LFR + S G I IDG DIS + LRS + ++PQD
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 1292 PMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348
+LF T+ N+ + E+ + + + V E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1408
++Q V +AR +LK I++LDEAT+++DT+ + IQ ++ + + T I VAHR+ TV++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 1409 NDLVLVLDEGKVLEYDSPRQLLEDN 1433
D +LV+ +G ++E LL
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 4e-32
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 33/287 (11%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
++ L+ + + + + + +KE+ TE + + G ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEE------TEVKDLPGAGPLRFQKGRIEFE 57
Query: 602 AREENF----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRI 650
+F + T++ +M G +A+ G G+GKS++L + G I RI
Sbjct: 58 --NVHFSYADGRETLQDVS-FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RI 113
Query: 651 SGAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQ 701
G I + VPQ + + TI +NI +G+ + +EV ++
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHD 171
Query: 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
I + +G + VGERG+ LSGG+KQR+ +AR + + + D+ SA+D +
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQ 230
Query: 762 QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + + +T + H+L + AD +LV+KDG I + G++E L++
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 2e-58
Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1325
+LIDG D+++ LR ++ ++ QD +L ++ N+ E +VI LA
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE--KVIYAAKLAG 123
Query: 1326 ----IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
I + + V E G S GQRQ + +AR L+ +IL+ DEAT+++D +++
Sbjct: 124 AHDFISELREG-YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
VI + + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 25/220 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I +G + + G GSGKS+L I G++ I G + + + V
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPNWLRRQVGVV 88
Query: 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGIN 720
Q + + +I +NI M E+V+ L I +G ++VGE+G
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSV---EKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + + +TV+ H+L
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES-EHVIMRNMHKICKGRTVIIIAHRL 204
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN---SELVRQ 817
+ AD ++VM+ GKI + GK+++L+++ S L +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 6e-57
Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 10/266 (3%)
Query: 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1232
S +R+L+ + +E P + + G + EN+ +Y VL G+ +
Sbjct: 310 SASAKRVLE---VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSV 366
Query: 1233 -PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
PG + V+G TGSGKSTL+ + R+++P GR+ +D +D+ + L+DLR +S +PQ+
Sbjct: 367 KPGSL-VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 1292 PMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348
+LF GT++ NL +D EI E + + + D+ V G N+S G
Sbjct: 426 TVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483
Query: 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1408
Q+Q + +AR L+KK ++L+LD+ T+S+D T+ I ++ T CT + +IPT +
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 1409 NDLVLVLDEGKVLEYDSPRQLLEDNS 1434
D +LVL EGKV + + ++LLE
Sbjct: 544 ADKILVLHEGKVAGFGTHKELLEHCK 569
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-35
Identities = 122/583 (20%), Positives = 229/583 (39%), Gaps = 84/583 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS-YHYGLVLASVFLFAKTVES 332
W L F V I P L+ V + D S G+++ V L
Sbjct: 22 WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGI 81
Query: 333 LTQRQWYFGAN---RIGIRVRSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVER 384
F + G +R L +++ ++ + SS +I + N DV +
Sbjct: 82 GCT---VFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSS-LITRLTN-DVTQ 132
Query: 385 IGDFFLYIHRIWLL-PVQVFLALV-ILYKNLGAAPAFAA-----LFSTIFVMVSNTPLAN 437
+ + + + RI + P+ +V + N+ + + +++ PL
Sbjct: 133 LQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFR 192
Query: 438 R-QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+ QE D + E L +RV++ E+ + R+ + +
Sbjct: 193 KIQEST--------DEVNRVVRENLLGVRVVRAFRREEYENE---NFRKANESLRRSIIS 241
Query: 497 TCSAIAFL-----FWASPTLVSVITFGVCILLKTPLTSGAVLSALA-TFRILQEPIYNLP 550
S I F F + +++V+ FG ++ + G++++ +I+ + +
Sbjct: 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IG 300
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK-- 608
+++ I + S R+ E + +P + +D A+ + E + F+
Sbjct: 301 NILNFIVRASASAKRVLEVLN--------EKPAIEEADNALALPNVEGSVSFENVEFRYF 352
Query: 609 ---KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK- 661
P + + + GS VAV G GSGKS+L++ L IPR ++V
Sbjct: 353 ENTDPVLSGVN-FSVKPGSLVAVLGETGSGKSTLMN--L--IPRLIDPERGRVEVDELDV 407
Query: 662 ------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMW 706
+ VPQ + + +GTI+EN+ +G++ + +E++E + Q I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISL 465
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G S V G N SGGQKQR+ +ARA+ V I DD S+VD T + L
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKR 524
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T T ++ AD +LV+ +GK+ G +++L+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 4e-56
Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 3/228 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINKCHLAE 1325
IDG I I L++ RS++ + QD + GT+R NL ++D+++W+V++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
V L+ V E G S GQRQ + +AR L+ +IL+LDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ T + +AHR+ T++D D + +++G++ +L+ +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
+ S +A G G GKS++ S + GEI I G I + +V
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQIGFVS 82
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G + + E++ + L +E D + VGERG+ +S
Sbjct: 83 QDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD + ++ G+I SGK+ +L+A
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 2e-52
Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 9/233 (3%)
Query: 1206 GKIELENLLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
IE ++ Y LK I P +VG TGSGKST+ + L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1320
I I G +++ +RS + I+PQD +LF T++ N+ +D+E+ +
Sbjct: 75 -DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKS 131
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
L + + + D V G S G+RQ + +AR LLK +I++ DEAT+S+D+ T+
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1433
+ Q+ + + T+I +AHR+ T+ + +++L++GK++E + + LL+ N
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 6e-32
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 19/205 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIK------VHGKKAYVPQ 666
I G+ A+ G GSGKS++ + G+I +I G + + VPQ
Sbjct: 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLSG 723
+ + TI+ NIL+GK + EEV++ L IE ++VG +G+ LSG
Sbjct: 101 DTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QRI +AR + + + IFD+ S++D+ T +LF++ + L +T++ H+L +
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTI 217
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
+A+ ++++ GKI + G ++DL+
Sbjct: 218 SSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-49
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 1205 SGKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P VL+G+T T K +VG GSGKST+ L + +P+
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINK 1320
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI V +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
+ + + D V E G S GQRQ V LAR L++K R+L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1381 NVIQQ---TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437
+Q+ E SR TV+ + ++ +L L EG V E + QL+E +
Sbjct: 193 LRVQRLLYESPEWASR-TVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCY 250
Query: 1438 SKLV 1441
+V
Sbjct: 251 RSMV 254
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 24/231 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ G A+ G GSGKS++ + + G++ + G + +H + A V
Sbjct: 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAV 98
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + + RENI +G + EE+ I + G + VGE G L
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQ 779
SGGQ+Q + LARA+ + I D+ SA+DA ++ L TVL T Q
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGN-QLRVQRLLYESPEWASRTVLLITQQ 216
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQ 827
L + A +L +K+G + + G + L+ +V +
Sbjct: 217 LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSDAAAHH 267
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 21/252 (8%)
Query: 1207 KIELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+IE+ N+ ++ P+ L+ ++ + + V G TGSGKSTL+Q + ++EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD----PLEQHSDQEIWEV 1317
G +L DG ++R + I Q P F V + + D++ +
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFD--EVAFAVKNFYPDRDPVPL 116
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ K + + D S G+++ V +A V++ + IL+LDE +D
Sbjct: 117 VKKA-MEFVGLDFDSFKDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1378 ATDNVIQQTIRE-ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSS 1435
+ + + + +T TVI ++H I TVI++ D V+VL++GK + + + LE
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDP 231
Query: 1436 SFSKLVAEFLRR 1447
F +RR
Sbjct: 232 RFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G + V G+ GSGKS+LL + G I SG + G++ + IR
Sbjct: 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYE--------IRR 78
Query: 678 NI----------LFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGI----- 719
NI F + ++EV ++ ++D + VG
Sbjct: 79 NIGIAFQYPEDQFFA----ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 720 ---NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----K 771
LSGG+K+R+ +A + D+ I D+P +D K L+ ++ + K
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG-----KTDLLRIVEKWKTLGK 189
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TV+ +H +E ++ D V+V++ GK G + + + + L
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 26/239 (10%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++E L Y+ LKGI + ++G G GKSTL Q +++PS GRIL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1268 IDGVDISM--IGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSDQEIWE 1316
D I G+ LR + I+ QDP LF +V N+ + + EI +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIRK 122
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
++ + + L D P S GQ++ V +A VL+ + ++L+LDE TA +D
Sbjct: 123 RVDNA--LKRTGIEH-LKDKPTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1432
+ I + + E + T+I H I V D V V+ EG+V+ +P+++ +
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 54/234 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
M I +G A+ G G GKS+L + G + SG I K R+
Sbjct: 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKP----------IDYSRK 77
Query: 678 NILFGKDMRQS------------FYEEVLEGCA---LNQDI---EMW--ADGDLSVVG-- 715
I +R+S F V + + +N + E+ D L G
Sbjct: 78 GI---MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 716 ---ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
++ LS GQK+R+ +A + V I D+P + +D + +M LL +
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP-----MGVSEIMKLLVEM 189
Query: 771 -----KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
T++ TH ++ D V VMK+G++ G +++ A++ E++R++
Sbjct: 190 QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EVIRKV 241
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 28/249 (11%)
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ + + L+ I GEK + ++G GSGK+TL++A+ ++ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD-PLEQH--SDQEIWEVINK 1320
I I+G+++ +R+ + P TV + E E++
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML-- 112
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
+ ++ + +L + + S GQ LV + L + I+ LDE ++D A
Sbjct: 113 ----KALKLGEEILRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLE-YDSPRQLLEDNSSSFS 1438
+VI + I+E I V H + + + G L+ S +LLE +
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGE 222
Query: 1439 KLVAEFLRR 1447
+ A +
Sbjct: 223 RNDALLVLD 231
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 26/211 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAI-KVHGKKAYVPQ--SSWIQTG 673
G KV + G GSGK++LL +I G +P I+G + K+ Y ++
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGV 88
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLA 732
T+ + + ++++ + LE + E R + LS GQ ++ +
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR--------RKLYKLSAGQSVLVRTS 140
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAAD-L 788
A+ S ++ D+PF VDA + + + + K + TH +
Sbjct: 141 LALASQPEIVGLDEPFENVDAAR-----RHVISRYIKEYGKEGILVTHELDMLNLYKEYK 195
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
+ +++ +L+ E R
Sbjct: 196 AYFLVGNRLQGPISVSELLESSIVEGERNDA 226
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 32/274 (11%)
Query: 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1249
L + + + + + + VL F + + ++G G+GK+
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1250 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE 1307
TLI+ L ++P G+ + ++SM +++ LF +R +
Sbjct: 393 TLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIRG-----Q 441
Query: 1308 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367
+ Q +V+ + + ++D V S G+ Q V + L I +
Sbjct: 442 FLNPQFQTDVVKPLRIDD-------IIDQEVQH----LSGGELQRVAIVLALGIPADIYL 490
Query: 1368 LDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLD--EGKVL 1421
+DE +A +D+ + + IR ++ T V H + D V+V + K
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNA 549
Query: 1422 EYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1455
+P LL + L F RR S R R
Sbjct: 550 HARAPESLLTGCNRFLKNLNVTF-RRDPNSFRPR 582
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-19
Identities = 43/255 (16%), Positives = 100/255 (39%), Gaps = 37/255 (14%)
Query: 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSG 635
+ D+ D + +++ + ++ + ++ + + + G G+G
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLN-VEEGEFSDSEILVMMGENGTG 390
Query: 636 KSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMR-----QSF 689
K++L+ + G + G + PQ + GT+R+ LF K +R F
Sbjct: 391 KTTLIKLLAGALKPDEGQ-DIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFLNPQF 447
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
+V++ ++ + ++ + +LSGG+ QR+ + A+ +D+Y+ D+P
Sbjct: 448 QTDVVKPLRIDD------------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 749 SAVDAHTGTHLFKQCLMGLL------SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-- 799
+ +D+ + ++ ++KT H AD V+V + +
Sbjct: 496 AYLDSEQ-----RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550
Query: 800 SGKYEDLIADQNSEL 814
+ E L+ N L
Sbjct: 551 ARAPESLLTGCNRFL 565
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 8e-18
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 34/221 (15%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHGKKA 662
+ + KL G + + G+ G GKS+ L + G+ R K
Sbjct: 87 YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 663 Y-------------------VPQSSWIQT--GTIRENILFGKDMRQSFYEEVLEGCALNQ 701
+ + + ++ I+ + ++ + E+ E + +
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE--DVKR 204
Query: 702 DIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
I++ L V +R I LSGG+ QR + + +DVY+FD+P S +D +
Sbjct: 205 YIKIL---QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 761 KQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799
+ + LL+ K V+ H L LD +D V ++
Sbjct: 262 QI-IRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 37/244 (15%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI-----------LIDGVDISMIGLQDL 1281
PG+ +G+VG G GKST ++ L +P+ GR G ++ + L
Sbjct: 102 PGQV-LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 1282 RSRLSIIPQDPMLFQ------GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335
+ I + + G V+ + L+ ++ +V + ++ + +L
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL----ENVLK 216
Query: 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRC 1394
+ + S G+ Q + +++ + + DE ++ +D Q IR
Sbjct: 217 RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1395 TVITVAHRIPTVIDN--DLVLVLD-----EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1447
VI V H + +V+D D V ++ G V S R+ + N + AE LR
Sbjct: 273 YVICVEHDL-SVLDYLSDFVCIIYGVPSVYGVVTLPASVREGI--NIFLDGHIPAENLRF 329
Query: 1448 TSKS 1451
+++
Sbjct: 330 RTEA 333
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 7e-23
Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 52/260 (20%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I+L+ + +LK I+ G+K + G G+GK+TL+ L + G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDK-WILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1267 LIDGVDISMIG--LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-------------QHSD 1311
+ G +G + +R + + + ++ Q D
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1312 QEIWEVINKC-------HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364
EI ++ A+ + L S G++Q V +AR L+ + +
Sbjct: 136 DEIRNEAHQLLKLVGMSAKAQ--QYIGYL------------STGEKQRVMIARALMGQPQ 181
Query: 1365 ILVLDEATASIDTATDNVIQQTIRE---ETSRCTVITVAHR---IPTVIDNDLVLVLDEG 1418
+L+LDE A +D + + +I V H I +L+L +G
Sbjct: 182 VLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSK--ILLLKDG 239
Query: 1419 KVLEYDSPRQLL-EDNSSSF 1437
+ ++ + +L +N S F
Sbjct: 240 QSIQQGAVEDILTSENMSRF 259
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------AY 663
+I KG K + G G+GK++LL+ + P SG + + GK +
Sbjct: 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT-VNLFGKMPGKVGYSAETVRQHIGF 101
Query: 664 VPQS---SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
V S + + + + ++ G Y+++ + + A L +VG
Sbjct: 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD-----EIRNE-AHQLLKLVGMSAKA 155
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
++ I LS G+KQR+ +ARA+ V I D+P + +D L L
Sbjct: 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDSYPTL 214
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
++Y TH +E +L++KDG+ Q G ED++ +N
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIR 676
+ KG +AV G G GKS+LL +LG I G I+V+ +VPQ S ++
Sbjct: 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK-IEVYQSIGFVPQFFSSPFAYSVL 84
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG-----ERGIN-LSGGQKQRIQ 730
+ +L G+ + + + D ++ A L + +R LSGGQ+Q I
Sbjct: 85 DIVLMGRSTHINTFAKPKS-----HDYQV-AMQALDYLNLTHLAKREFTSLSGGQRQLIL 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ---KTVLYTTHQLEF-LDAA 786
+ARA+ S + + D+P SA+D + L+ L+Q TV++TTHQ + A
Sbjct: 139 IARAIASECKLILLDEPTSALDLANQDIVLS--LLIDLAQSQNMTVVFTTHQPNQVVAIA 196
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+ L++ + G+ +++ +N + + +
Sbjct: 197 NKTLLLNKQNFKF-GETRNILTSENLTALFHLPMFEQQAQYKESF 240
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +ENL Y + + + + V+G+ G GKSTL+ L + P G+I
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVR----------TNLDPLEQHSDQEI-W 1315
+ + +PQ F +V N + D ++
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1375
+ ++ +L L S GQRQL+ +AR + + ++++LDE T+++
Sbjct: 111 QALDYLNLTH-------LAKREFTS----LSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1376 DTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKV 1420
D A +++ + + ++ TV+ H+ V+ + L+L++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L ++ + + +VG G+GKSTL+ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1284 RLSIIPQDPML-FQGTVRTNLDPLEQ----HSDQEI-WEVINKCHLAEIVRQDQRLLDAP 1337
+ + Q F V L + E+ +V L + L
Sbjct: 74 HRAYLSQQQTPPFATPVW---HYLTLHQHDKTRTELLNDVAGALALDD-------KLGRS 123
Query: 1338 VAEDGENWSVGQRQLVCLARVLL-------KKKRILVLDEATASIDTATDNVIQQTIREE 1390
+ S G+ Q V LA V+L ++L+LDE S+D A + + + +
Sbjct: 124 TNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1391 TSR-CTVITVAHRIPTVIDNDL---------VLVLDEGKVLEYDSPRQLL 1430
+ + ++ +H DL +L GK+L ++L
Sbjct: 180 SQQGLAIVMSSH--------DLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 7e-12
Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 47/232 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKK------AYVPQSS 668
+ G + + G G+GKS+LL+ + G + +G ++ AY+ Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 669 WIQTG-TIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ + + R +V ++ + LSGG+
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----ALDDKLGRSTN-------QLSGGE 131
Query: 726 KQRIQLARA-------VYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ-----KT 772
QR++LA + + D+P +++D A + L +LS
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQGLA 185
Query: 773 VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
++ ++H L A ++K GK+ SG+ E+++ N M R
Sbjct: 186 IVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRR 236
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 29/225 (12%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P
Sbjct: 7 HGSKLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQ-----HSDQEIWEV 1317
G I+ +GV I+ ++ ++ +P++ ++ + +V L + + EI +
Sbjct: 64 GEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA 118
Query: 1318 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1377
+ + ++ ++ L S G + V LA LL I VLD+ +ID
Sbjct: 119 LESVEVLDLKKKLGEL------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 1378 ATDNVIQQTIREETS-RCTVITVAHRIPTVIDNDLVLVLDEGKVL 1421
+ + + ++I E + VI + + D L +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYCDV--NENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-17
Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------YVPQSSW 669
M I KG+ V G G GK++LL +I + + G I +G ++P+
Sbjct: 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPITKVKGKIFFLPEEII 88
Query: 670 I-QTGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ + ++ + + G + ++ + LE ++ + ++ LS
Sbjct: 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLGELSQ 136
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLE 781
G +R+QLA + N+++Y+ DDP A+D + + ++ +L +K ++ + +L
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSREELS 195
Query: 782 FLDAADLVLVMKDGKIEQSGK 802
+ D+ + + K
Sbjct: 196 Y---CDVNENLHKYSTKIDKK 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 34/242 (14%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L + IG++G G GK+T + L + G + + +S
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-------- 334
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
+ I + GTV+ L+ + S EV + +L LL++ V
Sbjct: 335 KPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-------LLESNVN 384
Query: 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVI 1397
+ S G+ Q + +A L K+ + VLD+ ++ +D ++ + I+ +
Sbjct: 385 D----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 1398 TVAHRIPTVIDN--DLVLVLDEGKVLEYDSPR--QLLEDNSSSFSKLVAEFLRRTSKSNR 1453
+ H + ++ D D ++V +G+ + L+ + F + + RR +++ R
Sbjct: 441 IIDHDL-SIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGR 498
Query: 1454 NR 1455
R
Sbjct: 499 PR 500
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 33/273 (12%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPT---IKLTDKMKIMKG 623
+ ++ +N K E +V+ + + + K + D + +G
Sbjct: 235 KGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEG 294
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQSSWI-QTGTIREN--- 678
+ + G G GK++ ++GEI G+ + + +Y PQ + GT+++
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGS-VTPEKQILSYKPQRIFPNYDGTVQQYLEN 353
Query: 679 -ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
F+EEV + L++ +E + +LSGG+ Q++ +A +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLE------------SNVNDLSGGELQKLYIAATLA 401
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMK 793
+D+Y+ D P S +D + K + + + H L D AD ++V K
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
G+ E++G +A L M + L+
Sbjct: 461 -GEPEKAG-----LATSPVTLKTGMNEFLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ + V G G GK+++L + GEI + R
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEI--------IPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 680 L---FGKDM-------RQSFY----EEVLEGC---------ALNQDIEMWADGDLSVVGE 716
+ F + + Y + L+G + E+ +++ +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN 133
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ LSGG QR+ +A ++ +DVYIFD P S +D + + LL K V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE-RMNMAKAIRELLKNKYVIV 192
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQ 810
H L LD DL+ ++ + A
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 41/212 (19%), Positives = 83/212 (39%), Gaps = 39/212 (18%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIPQD 1291
+GV+G+ G GK+T+++ L + P+ G + L+ R + ++
Sbjct: 24 NNTI-LGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 1292 PM------------------LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1333
+GTV L +++ + EV ++ + +D +
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER--GKKDEVKELLNMTNLWNKDANI 138
Query: 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1393
L S G Q + +A LL++ + + D+ ++ +D + + IRE
Sbjct: 139 L-----------SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 1394 CTVITVAHRIPTVIDN--DLVLVLDEGKVLEY 1423
VI V H + V+D DL+ ++ G+ Y
Sbjct: 188 KYVIVVDHDL-IVLDYLTDLIHII-YGESSVY 217
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L+ + IG+VG G GK+T ++ L V EP+ G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1284 RLSIIPQDPML---FQGTVR---TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
++ + + ++GTV + +D + +S+ E++ + + L D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID-------LYDRN 468
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCT 1395
V + S G+ Q V +A LL+ I +LDE +A +D + + IR E + T
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 1396 VITVAHRIPTVIDN--DLVLVLDEGKVLEY---DSPRQLLEDNSSSFSKLVAEFLRRTSK 1450
+ V H + +ID D ++V EG+ + P + E + + + F RR
Sbjct: 525 ALVVEHDV-LMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITF-RRDPD 581
Query: 1451 SNRNR 1455
S R R
Sbjct: 582 SGRPR 586
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 48/246 (19%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 567 QEFIKEDNQK-KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
Q ++K++N + +P +K S+ + +++ ++ + +I KG
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLE-VEPGEIRKGEV 384
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G ++ AY PQ GT+ E +
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-VEWDLTVAYKPQYIKAEYEGTVYELLSKIDS 443
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + V + LSGG+ QR+ +A + ++D+
Sbjct: 444 SKLNSNFYKTELLKPLGIIDLYD-------RNVED----LSGGELQRVAIAATLLRDADI 492
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 799 QSGKYE 804
+ G+
Sbjct: 551 RHGRAL 556
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 40/249 (16%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR------ILIDGVDISMIGLQDLRSR-- 1284
G +G+VG G+GK+T ++ L + P+ +I + + R +
Sbjct: 116 DGMV-VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 1285 -LSIIPQDPM------LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337
+ + + +G VR L +++ E EV+ + L + +LD
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE--EVVKELEL-------ENVLDRE 225
Query: 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTV 1396
+ S G+ Q V +A LL+K DE ++ +D + + IR V
Sbjct: 226 L----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1397 ITVAHRIPTVIDN--DLVLVLD-----EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1449
+ V H + V+D D++ V+ G + R + + + L E +R
Sbjct: 282 LVVEHDL-AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY--LKDENVRFRP 338
Query: 1450 KSNRNRDLS 1458
R LS
Sbjct: 339 YEIRFTKLS 347
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 53/228 (23%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------------------ 648
+ L + G V + G G+GK++ + + G++
Sbjct: 101 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 649 ---------RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LE 695
R+ I+ K YV G +RE +L D F E V LE
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE-LLKKVDEVGKFEEVVKELELE 219
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L++++ LSGG+ QR+ +A A+ + Y FD+P S +D
Sbjct: 220 N-VLDRELH---------------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 756 GTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+ + ++ L+ K VL H L LD +D++ V+
Sbjct: 264 RLKVAR--VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 42/236 (17%), Positives = 105/236 (44%), Gaps = 32/236 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+ +++L + +LKGI+ GE I G++G G+GK+T ++ + +++PS G
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD--------PLEQHSDQEIWE 1316
+ + G ++ ++R +S +P++ ++ L ++ +
Sbjct: 72 VTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVER 129
Query: 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
L E + R+ +S G + + +AR L+ R+ +LDE T+ +D
Sbjct: 130 ATEIAGLGE--KIKDRV---------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 1377 TATDNVIQQTIREETSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQL 1429
+++ +++ + T++ +H + ++ D + ++ G ++E + +L
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 633 GSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRENIL 680
G+GK++ L I I + G + + Y+P+ + E +
Sbjct: 51 GAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR 110
Query: 681 F-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
F + E E L + +R S G +++ +AR
Sbjct: 111 FVAGFYASSSSEIEEMVERATEIAGLGE----KIK-------DRVSTYSKGMVRKLLIAR 159
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLV 791
A+ N + I D+P S +D ++ L + T+L ++H + ++ D + +
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLN-AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIAL 218
Query: 792 MKDGKIEQSGKYEDLIADQNSELV 815
+ +G I ++G E+L ++ +
Sbjct: 219 IHNGTIVETGTVEELKERYKAQNI 242
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-19
Identities = 54/257 (21%), Positives = 101/257 (39%), Gaps = 44/257 (17%)
Query: 1188 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1247
+ + E + L+ Y L+ + IG+VG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVR---T 1301
K+T ++ L V EP+ G+I D ++ + + ++GTV +
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVYELLS 369
Query: 1302 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361
+D + +S+ E++ + ++ ++ L S G+ Q V +A LL+
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNEL-----------SGGELQRVAIAATLLR 418
Query: 1362 KKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDE 1417
I +LDE +A +D + + IR E + T + V H + +ID D ++V E
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVF-E 476
Query: 1418 GKVLEY---DSPRQLLE 1431
G+ +Y P + E
Sbjct: 477 GEPGKYGRALPPMGMRE 493
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-18
Identities = 47/244 (19%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGE-YAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ ++K++N + E + ++IE + +++ ++ + +I KG
Sbjct: 256 RGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLE-VEPGEIKKGEV 314
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G I+ AY PQ GT+ E +
Sbjct: 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-IEWDLTVAYKPQYIKADYEGTVYELLSKIDA 373
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + + LSGG+ QR+ +A + ++D+
Sbjct: 374 SKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDADI 422
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPG 480
Query: 799 QSGK 802
+ G+
Sbjct: 481 KYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 39/238 (16%)
Query: 1208 IELENLLV----QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS- 1262
+E L +Y VL + G +G+VG G+GKST ++ L + P+
Sbjct: 18 SHMEQLEEDCVHRYGVN-AFVLYRLPVVKEGMV-VGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1263 -----GGRILIDGVDISMIGLQDLRSR---LSIIPQDPM------LFQGTVRTNLDPLEQ 1308
+I + + + + + + + +G V L ++
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE 135
Query: 1309 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
E EV+ L + +L+ + S G+ Q V +A LL+
Sbjct: 136 TGKLE--EVVKALEL-------ENVLEREIQH----LSGGELQRVAIAAALLRNATFYFF 182
Query: 1369 DEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVLEY 1423
DE ++ +D + IR + +V+ V H + V+D D++ V+ G+ Y
Sbjct: 183 DEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVV-YGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 25/210 (11%)
Query: 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSW 669
L + +G V + G G+GKS+ + + G+ IP + G G +
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE- 93
Query: 670 IQTGTIRENILFGKDMRQSFYE---------------EVLEGCALNQDIEMWADG-DLSV 713
+Q + L ++R E+L+ +E +L
Sbjct: 94 LQNYFEK---LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150
Query: 714 VGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-K 771
V ER I +LSGG+ QR+ +A A+ N+ Y FD+P S +D + + + L + K
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA-ARAIRRLSEEGK 209
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+VL H L LD +D++ V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 38/291 (13%)
Query: 1187 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRT 1244
+S + I+L N+ ++ + L ++ P + GV+G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQG------ 1297
G+GKSTLI+ + + P+ G +L+DG +++ + +L R I M+FQ
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI----GMIFQHFNLLSS 119
Query: 1298 -TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW-----SVGQR 1350
TV N+ PLE ++ E+ R+ LL D + S GQ+
Sbjct: 120 RTVFGNVALPLE----------LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1408
Q V +AR L ++L+ D+AT+++D AT I + +++ T++ + H + V+
Sbjct: 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVK 228
Query: 1409 N--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRDL 1457
D V V+ G+++E D+ ++ + ++ +F++ T + D
Sbjct: 229 RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ---KFIQSTLHLDIPEDY 276
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGLLSQKTV 773
NLSGGQKQR+ +ARA+ SN V + D SA+D T T + L +GL T+
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT-TRSILELLKDINRRLGL----TI 217
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
L TH+++ + D V V+ +G++ + ++ + + L ++
Sbjct: 218 LLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 98/645 (15%), Positives = 183/645 (28%), Gaps = 182/645 (28%)
Query: 531 AVLSALATFRILQEP--IYNLPELISMIAQTKVSLYRIQEFIKEDNQK------KPI-TE 581
++LS I+ + L + + + Q+F++E + PI TE
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTE 101
Query: 582 PTSKASDVAIDIEAGEYAWDAREENFKK-------PTIKLTDKMKIMK-GSKVAVCGSVG 633
+ + IE + ++ + F K P +KL + ++ V + G +G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 634 SGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--ENILFGKDMRQSFYE 691
SGK+ + + K+ W+ E +L +M Q
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF----------WLNLKNCNSPETVL---EMLQKLLY 207
Query: 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDD 746
++ D + D S + I+ S + R L Y N +V +
Sbjct: 208 QI--------DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQ---N 255
Query: 747 PFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805
A +A F C +L TT F D + I
Sbjct: 256 A-KAWNA------FNLSC--------KILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 806 LIADQNSELVRQ---MKAHRKSLDQVNPPQEDKCLSRVPCQMSQITE------------- 849
L D+ L+ + + + L P + P ++S I E
Sbjct: 298 LTPDEVKSLLLKYLDCRP--QDL----PREVLTTN---PRRLSIIAESIRDGLATWDNWK 348
Query: 850 ----ERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA 905
++ I E S + E + ++ A +P ILL
Sbjct: 349 HVNCDKLTTII---ESSLNVLEPA-EYRK----MFDRLSVFP-PSAHIPTILLSL----- 394
Query: 906 LQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ--RLF 963
W + V + L + L+ K + +
Sbjct: 395 ------IWFDVIKSDVMVVVNK-----------------LHKYSLVE----KQPKESTIS 427
Query: 964 LNMITSVFRAPISFFDSTPS--SRILNR-------CSTDQSTVDTD------IPYRLAGL 1008
+ I + + ++ + I++ S D D I + L +
Sbjct: 428 IPSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1009 -------AFALIQL-LSII---ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARM 1057
F ++ L + I AW L L +Y+ Y + R+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1058 VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102
V + F I I + LLR +L+ + +
Sbjct: 545 VNA-----ILDFLPKI-EENLICS---KYTDLLRI-ALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-12
Identities = 112/706 (15%), Positives = 210/706 (29%), Gaps = 228/706 (32%)
Query: 185 DIPLLREED--DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSE 242
DI + E+ D F CK++ + + K E+ HI +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDM------------------PKSILSKEEIDHIIMSKDAV 61
Query: 243 TANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIAS-YIGPFLIT-N 300
+ L L KQ+ +++ V + L +N F ++ I + P ++T
Sbjct: 62 SGTLR--LFWTLLSKQE-------EMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRM 111
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAK-TV---ESLTQ-RQWYFGANRIGIRVRSALTV 355
++ ++ + +FAK V + + RQ +R A V
Sbjct: 112 YIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALL-------ELRPAKNV 153
Query: 356 LIY------KRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
LI K +A+ + V+ DF ++ WL
Sbjct: 154 LIDGVLGSGKTWVALDVCL----------SYKVQCKMDFKIF----WL------------ 187
Query: 410 YKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKD--ARIKATSETLKSMRVL 467
NL + + L + D + IK ++++ +
Sbjct: 188 --NLKNCNSPETVL---------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELR 235
Query: 468 KLLSWEQEFLKKLLRLREI-ERDSLKKYLYTC---------SAIAFLFWASPTLVSVITF 517
+LL + + LL L + + + +C FL A+ T +S+
Sbjct: 236 RLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-- 292
Query: 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577
LT V S L + L +LP + ++S+ I E I++
Sbjct: 293 ----HHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSI--IAESIRDG---- 340
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI-KLTDKMKIMKGSKVAVCGSVGSGK 636
T WD N+K KLT ++
Sbjct: 341 LAT-------------------WD----NWKHVNCDKLTTIIE----------------- 360
Query: 637 SSL--LSSILGEIPRISGAAIKVHGKKAYV-----PQSSWIQTGTIRENILFGKDMRQSF 689
SSL L E +K + P S+ I T + ++++ D+ +S
Sbjct: 361 SSLNVLEP--AEY------------RKMFDRLSVFPPSAHIPTILL--SLIWF-DVIKSD 403
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV---YSNSDVYIFDD 746
V+ +E + + L + L R++ Y+ + DD
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 747 PF-SAVD----AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+D +H G HL ++ +++ FL+ KI
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQ----------KIRHDS 511
Query: 802 -----------------KYEDLIADQNSELVRQMKAHRKSLDQVNP 830
Y+ I D + + R + A L ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 7e-12
Identities = 52/350 (14%), Positives = 111/350 (31%), Gaps = 105/350 (30%)
Query: 1126 FLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNVENK---MISVERILQ 1181
+ L++ + + L Y + + + E + M++ I Q
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK--------F-LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1182 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241
+ ++ + K + + ++L L++ P K + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRP---------------AKNVLID 156
Query: 1242 GRTGSGKSTL-IQAL--FRVVEPSGGRIL------IDGVDISMIGLQDLRSRLSIIPQDP 1292
G GSGK+ + + ++V +I + + + LQ L ++ DP
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DP 211
Query: 1293 MLFQGTVRTNLDPLEQHSDQE------IWEVINKCHLAEIVR--QDQRLLDAPVAEDGEN 1344
+ ++ L HS Q + C L ++ Q+ + +A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNA-------- 261
Query: 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404
+++ C +IL+ T V T+
Sbjct: 262 FNLS-----C---------KILLT--------TRFKQVTDFLSAATTTH----------I 289
Query: 1405 TVIDNDLVLVLDEG-----KVLE---YDSPRQLLEDNSSSFSKLVAEFLR 1446
++ + + L DE K L+ D PR++L N S ++AE +R
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIR 338
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 107/721 (14%), Positives = 201/721 (27%), Gaps = 250/721 (34%)
Query: 815 VRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGR 874
+ + K + V ED + C+ + + + I S D
Sbjct: 11 TGEHQYQYKDILSVF---EDAFVDNFDCK--DVQD--MPKSI----LSKEEIDHIIMSKD 59
Query: 875 VKWTVYSAFITLVYKGALVPVILLCQVLFQ-ALQMGSNY-WI--AWATD----------- 919
F TL+ K + Q + L+ NY ++ T+
Sbjct: 60 AVSGTLRLFWTLLSKQEEM-----VQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMY 112
Query: 920 --------------EKRKVSREQLI------------GVFIFLSG--GSSFFILGRAVLL 951
K VSR Q + + G GS G+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----GKTWV- 166
Query: 952 ATIAIKTAQ--RLFLNMITSVFRAPISF-FDSTPSSRI---LNRCS------TDQSTVDT 999
A+ ++ M +F ++ ++P + + T +S +
Sbjct: 167 ---ALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1000 DIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVG 1059
+I R+ + L +LL + + L++L ++
Sbjct: 222 NIKLRIHSIQAELRRLL---------KSKPYENCLLVLL-NVQN---------------- 255
Query: 1060 TRKAPILHHFSESIAGATTIRCFNQENRFLL--RSHSLIDDYSCVTF------HNCGTM- 1110
A + F+ + C + LL R + D S T H+ T+
Sbjct: 256 ---AKAWNAFN--------LSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1111 --EWLCLRINLLFNFAFFLVLIILVTLPRSA--IDP-SLAGLAATYGLNLNVLQAWVIWN 1165
E L +L LPR +P L+ +A + L W W
Sbjct: 300 PDEVKSL-------LLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWK 348
Query: 1166 LCNVENKMISVERILQ----------------F---TNIPSEAPLVIKNSRPSPEWPSSG 1206
N + +E L F +IP+ L + W
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLI-------WFDVI 400
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K ++ ++ + + K +L++ +P I
Sbjct: 401 KSDVMVVVNKLH-----------------------------KYSLVEK-----QPKESTI 426
Query: 1267 LIDGVDISMIGLQDLRSRL--SIIPQD--PMLFQGTVRTNLDPLEQHSDQEIWEVINKCH 1322
I + + + + L SI+ P F D + + DQ + I H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQYFYSHIGH-H 480
Query: 1323 LAEI-----------VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371
L I V D R L+ + D W+ L L ++ K I D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 1372 -TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV-LVL-DEGKVLEYDSPRQ 1428
++ D + + S+ T DL+ + L E + + ++ +Q
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYT--------------DLLRIALMAEDEAIFEEAHKQ 586
Query: 1429 L 1429
+
Sbjct: 587 V 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-04
Identities = 55/398 (13%), Positives = 101/398 (25%), Gaps = 143/398 (35%)
Query: 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYILMARRAAGLVIVLCNVLIFIL 66
L++ + KV +F W+ + + + M ++ L +
Sbjct: 168 LDVCLSYKVQC----KMDFKIF---WLNLKNCNSPETVLEMLQK-------LLYQID--- 210
Query: 67 YMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWP---LVL--VLW 121
W R ++ L + R L + K + LVL V
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKPYENCLLVLLNV-Q 254
Query: 122 --WVVH--------LVI-----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVS------ 160
+ L+ V +S TH+S L + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 161 ---LPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCK-------NISTFASAGVL 210
LP V +P + ++ E + L N +
Sbjct: 315 PQDLPREV-----------LTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTI--- 358
Query: 211 SKITFHWLNQLFQRGRIQKLELL----HIPP---------IPQSETANDASSLLEESL-- 255
+ + + L R +L + HIP + +S+ + L + SL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 256 RKQKTDATSLPQVII------------HAV------------WKSLALNAAFAGVNTIAS 291
++ K S+P + + H L S
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYS 475
Query: 292 YIG---------------PFLITNFVSFLSGKHDHSSY 314
+IG + +F FL K H S
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDST 512
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 9e-04
Identities = 102/664 (15%), Positives = 189/664 (28%), Gaps = 215/664 (32%)
Query: 302 VSFLSGKHDHSSYHYGLVLASVFL--FAKTVESLTQRQWYFGANRIGIRVRSALTVLIYK 359
+ F +G+H Y Y +L SVF F F + +S L+
Sbjct: 7 MDFETGEHQ---YQYKDIL-SVFEDAFVDN----------FDCKDVQDMPKSILSKEEID 52
Query: 360 RSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLL------PVQVFLALVILYKNL 413
II + V L W L VQ F+ V L N
Sbjct: 53 H-------------IIMSKD-AVSGT--LRL----FWTLLSKQEEMVQKFVEEV-LRINY 91
Query: 414 GAAPAFAALFSTIFVMVSNTPLA--NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS 471
F+M +P+ RQ + + + R+ ++ V +
Sbjct: 92 K------------FLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--- 133
Query: 472 WEQEFLK---KLLRLREIERDSL-------KKYL--YTCSAIAFL-------FWASPTLV 512
Q +LK LL LR + + K ++ C + FW
Sbjct: 134 -LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW------ 186
Query: 513 SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYN-LPELISMIAQTKVSLY-RIQEFI 570
+ C +P VL L +P + + S I S+ ++ +
Sbjct: 187 --LNLKNC---NSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 571 KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREE---NFKKPTI------KLTDKMKIM 621
K +P V +++ +A+ N + ++TD +
Sbjct: 239 KS--------KPYENCLLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 622 KGSKVAV---CGSVGSGKS-SLLSSILG----EIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+ +++ ++ + SLL L ++PR + + P+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTN------PRR----LS 331
Query: 674 TIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
I E+I +D ++ V L IE S+
Sbjct: 332 IIAESI---RDGLATWDNWKHV-NCDKLTTIIES------SL-----------NVLEPAE 370
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
R ++ + +F AH T L + + + V+ ++L LV
Sbjct: 371 YRKMFD--RLSVFPP-----SAHIPTILL-SLIWFDVIKSDVMVVVNKLH-----KYSLV 417
Query: 792 MKDGKIEQSGKYE--DLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVP-------- 841
K K + + +L + HR +D N P+ +P
Sbjct: 418 EKQPK---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 842 ---------CQMSQITEE--------RF-ARPI--SCGEFSGRSQDEDTELGRVKWTVYS 881
+ + RF + I ++ +T L ++K Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLK--FYK 531
Query: 882 AFIT 885
+I
Sbjct: 532 PYIC 535
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS------ 667
+ G G+GKS L I G P ++++G +VPQ
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 668 -SWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSG 723
++ NI +G R V E ++ + +R LSG
Sbjct: 85 L------SVYRNIAYGLRNVERVERDRRVREMAEKLG---------IAHLLDRKPARLSG 129
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH- 778
G++QR+ LARA+ + + D+P SAVD T L ++ L + Q+ +L+ TH
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE-LRFV--QREFDVPILHVTHD 186
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+E AD V VM +G+I + GK ++L
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVR 1300
G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF +V
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHLSVY 88
Query: 1301 TNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359
N+ L E + + +AE + L P S G+RQ V LAR L
Sbjct: 89 RNIAYGLRNVERVERDRRVRE--MAEKLGIAHLLDRKP-----ARLSGGERQRVALARAL 141
Query: 1360 LKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------ND 1410
+ + R+L+LDE +++D T V+ + +R ++ V H D D
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH------DLIEAAMLAD 195
Query: 1411 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
V V+ G+++E ++L + VAEFL
Sbjct: 196 EVAVMLNGRIVEKGKLKELFS-AKNGE---VAEFL 226
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 5e-14
Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS- 667
K + T +++ + + +CG G GKS+L+ +I ++ G + + YV
Sbjct: 448 KILLNKTQ-LRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHDI 504
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
++ + + + ++ L EM +S LSGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDKLIE--FGFTDEMI-AMPIS-------ALSGGWK 554
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA- 785
++ LARAV N+D+ + D+P + +D L L T + +H FLD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWL-VNYLNTC--GITSITISHDSVFLDNV 611
Query: 786 ADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQ 827
+ ++ + K+ + G + + + + KA+ + +
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFV-----KKCPAAKAYEELSNT 649
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-10
Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 42/241 (17%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
++L ++ G+ G G GKSTL++A+ G +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVY------- 499
Query: 1283 SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
+ D + LD + + + +K L E ++ P++
Sbjct: 500 -----VEHDIDGTHSD-TSVLDFVFESGVGTKEAIKDK--LIE-FGFTDEMIAMPISA-- 548
Query: 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH- 1401
S G + + LAR +L+ IL+LDE T +DT + + T T IT++H
Sbjct: 549 --LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHD 604
Query: 1402 -----RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRD 1456
+ I + + K+ +Y N + F K SN + +
Sbjct: 605 SVFLDNVCEYI-----INYEGLKLRKYKG-------NFTEFVKKCPAAKAYEELSNTDLE 652
Query: 1457 L 1457
Sbjct: 653 F 653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT-HLFKQCLMGLLS-----QKTV 773
LSGGQK ++ LA + + + D+P T +L + L L + V
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEP---------TNYLDRDSLGALSKALKEFEGGV 951
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH EF + V +KDG++ SG
Sbjct: 952 IIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 8e-06
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++ N+ QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 67/227 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKA-----------YVP 665
+I +G V + G GSGK+++L I G E P + + + GK+ V
Sbjct: 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 666 QS-------SWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVV 714
Q+ T+ +N+ FG ++ +E V E + L
Sbjct: 94 QNYALFQHM------TVYDNVSFGLREKRVPKDEMDARVRELLRFMR---------LESY 138
Query: 715 GERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA-------------HTGTHLF 760
R + LSGGQ+QR+ LARA+ V +FD+PF+A+D H +
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV- 197
Query: 761 KQCLMGLLSQKTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T ++ TH Q E L+ AD VLV+ +G +EQ G E++
Sbjct: 198 -----------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 60/265 (22%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE + Y ++G++ + +G++G +GSGK+T+++ + + P+ G +
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-------TVRTNLD-PLEQHSDQEIWEVIN 1319
I G ++ + Q R ++FQ TV N+ L
Sbjct: 74 IGGKRVTDLPPQK-R-------NVGLVFQNYALFQHMTVYDNVSFGLR----------EK 115
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDG------ENWSVGQRQLVCLARVLLKKKRILVLDEATA 1373
+ E+ + + LL + + S GQ+Q V LAR L + ++L+ DE A
Sbjct: 116 RVPKDEMDARVRELLRF-MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1374 SIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLDEGKV 1420
A D I++ +R + T + V H D D VLVL EG V
Sbjct: 175 ----AIDTQIRRELRTFVRQVHDEMGVTSVFVTH------DQEEALEVADRVLVLHEGNV 224
Query: 1421 LEYDSPRQLLEDNSSSFSKLVAEFL 1445
++ +P ++ E + F VA F+
Sbjct: 225 EQFGTPEEVYEKPGTLF---VASFI 246
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 65/245 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVH-GKKAYVPQSSW 669
++ G +++ GS GSGKS+ L I G I ++G I + K + +
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLKVADK 85
Query: 670 IQTGTIRENI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVV 714
Q +R + +F Q F + VLE D A L+ V
Sbjct: 86 NQLRLLRTRLTMVF-----QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 715 G--ERG-----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------A 753
G ER ++LSGGQ+QR+ +ARA+ DV +FD+P SA+D A
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200
Query: 754 HTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNS 812
G T++ TH++ F + V+ + GKIE+ G E + + S
Sbjct: 201 EEGK--------------TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
Query: 813 ELVRQ 817
++Q
Sbjct: 247 PRLQQ 251
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 71/282 (25%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
K+ + +L +Y VLKG++ G+ I ++G +GSGKST ++ + + +PS G
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDV-ISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 1266 ILIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQG-------TVRTN--L 1303
I+++G +I+++ L+ LR+RL+ M+FQ TV N
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT------MVFQHFNLWSHMTVLENVME 116
Query: 1304 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD----APVAEDG--ENWSVGQRQLVCLAR 1357
P++ + + + + L A+ + S GQ+Q V +AR
Sbjct: 117 APIQ----------VLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166
Query: 1358 VLLKKKRILVLDEATASIDTATD--------NVIQQTIREETSRCTVITVAHRIP---TV 1406
L + +L+ DE T +A D ++QQ E T++ V H + V
Sbjct: 167 ALAMEPDVLLFDEPT----SALDPELVGEVLRIMQQLAEEGK---TMVVVTHEMGFARHV 219
Query: 1407 IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
+ V+ L +GK+ E P Q+ + S + +FL+ +
Sbjct: 220 SSH--VIFLHQGKIEEEGDPEQVFGNPQSPRLQ---QFLKGS 256
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 35/206 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK--------AYVP 665
+ G + + G+ G GK++LL + G E P +SG I Y+
Sbjct: 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86
Query: 666 QSSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q G T+ NI +G + + + M +S + R
Sbjct: 87 QE-----GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE-----AMLELTGISELAGRYP 136
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYT 776
+ LSGGQ+QR LARA+ + ++ + D+PFSA+D + + ++ L K+ ++
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRANGKSAVFV 195
Query: 777 TH-QLEFLDAADLVLVMKDGKIEQSG 801
+H + E L AD + VMK G+I Q+
Sbjct: 196 SHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 56/272 (20%), Positives = 104/272 (38%), Gaps = 71/272 (26%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ + +L + T VL I+ + PGE + ++G +G GK+TL++ L +P G I
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEI-LFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDP------MLFQG-------TVRTNLD-PLEQHSDQ 1312
+ G I +P L Q TV N+ L
Sbjct: 62 SLSGKTIFSKNTN--------LP--VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--- 108
Query: 1313 EIWEVINKCHLAEIVRQDQRLLD----APVAED------GENWSVGQRQLVCLARVLLKK 1362
K A+ ++ + +L+ + +A G GQ+Q LAR L
Sbjct: 109 -------KGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPD 156
Query: 1363 KRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------NDLVL 1413
+++LDE +++D I++ + + + + V+H D D +
Sbjct: 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH------DREEALQYADRIA 210
Query: 1414 VLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
V+ +G++L+ SP +L + A F+
Sbjct: 211 VMKQGRILQTASPHELYRQPADLD---AALFI 239
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSG Q+QR+ LARA+ + + + D+PFS +DA + + + + T+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE------VQSRLGVTL 194
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L +H + AD V V+ GK+ Q GK EDL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 60/269 (22%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV----EPS 1262
+I ++N+ + + L + ++ G++G +G+GK+T + R++ PS
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPS 58
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQH-- 1309
G + D ++ G + P+D M+FQ T N+ PL
Sbjct: 59 TGELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
Query: 1310 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369
S +EI + + + +A+I+ L P G Q+Q V LAR L+K +L+LD
Sbjct: 113 SKEEIRKRVEE--VAKILDIHHVLNHFPRELSG-----AQQQRVALARALVKDPSLLLLD 165
Query: 1370 EATASIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLD 1416
E +++D ++ + R T++ V+H D D V VL
Sbjct: 166 EPFSNLDAR----MRDSARALVKEVQSRLGVTLLVVSH------DPADIFAIADRVGVLV 215
Query: 1417 EGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
+GK+++ P L ++ S VA +
Sbjct: 216 KGKLVQVGKPEDLYDNPVSIQ---VASLI 241
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 48/214 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS 667
+ G + G G+GK+ L I G +P I + GK A+V Q+
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQN 80
Query: 668 -------SWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+++N+ FG M+ + VL+ + + + +R
Sbjct: 81 YSLFPHM------NVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDRNP 125
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQK----TV 773
LSGG++QR+ LARA+ +N + + D+P SA+D T + + L L K TV
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA--REMLSVL--HKKNKLTV 181
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L+ TH Q E AD + V+ DGK+ Q GK E++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 54/239 (22%), Positives = 88/239 (36%), Gaps = 78/239 (32%)
Query: 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-------ML 1294
G TG+GK+ ++ + P GRIL+DG D++ + +
Sbjct: 33 GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---------------SPEKHDIAFV 77
Query: 1295 FQG-------TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED----- 1341
+Q V+ NL+ + + K + V R L D
Sbjct: 78 YQNYSLFPHMNVKKNLEFGMR----------MKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 1342 --GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR------ 1393
G G++Q V LAR L+ +IL+LDE + A D Q+ RE S
Sbjct: 128 LSG-----GEQQRVALARALVTNPKILLLDEPLS----ALDPRTQENAREMLSVLHKKNK 178
Query: 1394 CTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
TV+ + H D D + V+ +GK+++ P ++ E VA F+
Sbjct: 179 LTVLHITH------DQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VASFV 228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 39/222 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V V G GSGKS+ L + + I + G + +RE
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKAKDT---NLNKVRE 100
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG--ERG-- 718
+ +F Q F + VL L E A L VG ++
Sbjct: 101 EVGMVF-----QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQK--T 772
+LSGGQ QR+ +ARA+ + +FD+P SA+D + + L M L+ + T
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVMKQLANEGMT 211
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
++ TH++ F + D VL M G I + GK EDL E
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 36/243 (14%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I++ L + VLKGI GE + V+G +GSGKST ++ L + + G I
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEV-VVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1267 LIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP----LEQHSDQEIWEVINK 1320
+IDG+++ L +R + M+FQ R NL P L + + + K
Sbjct: 82 IIDGINLKAKDTNLNKVREEVG------MVFQ---RFNLFPHMTVLNNITLAPMK--VRK 130
Query: 1321 CHLAEIVRQDQRLLD-APVAEDGENW----SVGQRQLVCLARVLLKKKRILVLDEATASI 1375
+ + LLD + + + S GQ Q V +AR L + +I++ DE T+++
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 1376 DTATDNVIQQTIRE-ETSRCTVITVAH-----RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
D + +++ T++ V H R V D VL +D G ++E P L
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR--EVGDR--VLFMDGGYIIEEGKPEDL 246
Query: 1430 LED 1432
+
Sbjct: 247 FDR 249
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ +V + D+P S +DA L + L ++ T
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR------LQKELGITT 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q E L AD + V+++G+I Q G
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 69/270 (25%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV----EPS 1262
+I+LEN++ ++ L I + + ++G +GSGKSTL+ + +P+
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLL----YTIAGIYKPT 56
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLE--QH 1309
G+I D D++ +L P+D ++FQ TV N+ PLE +
Sbjct: 57 SGKIYFDEKDVT-----ELP------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105
Query: 1310 SDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
+EI + + + A+++ D+ LL+ P G GQ+Q V +AR L+K+ +L+L
Sbjct: 106 PREEIDKKVREV--AKMLHIDK-LLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLL 157
Query: 1369 DEATASIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVL 1415
DE +++D A + + R E R T + V H D D + V+
Sbjct: 158 DEPLSNLD-ALLRL--EV-RAELKRLQKELGITTVYVTH------DQAEALAMADRIAVI 207
Query: 1416 DEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
EG++L+ +P ++ F V FL
Sbjct: 208 REGEILQVGTPDEVYYKPKYKF---VGGFL 234
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ DV + D+P S +DA + K L QK T
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK------LQQKLKVTT 195
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G++ Q G
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 5e-11
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ LARA+ V +FD+P S +DA + L Q+ T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH------LQQELGITS 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+Y TH Q E + A + V GK+ Q G +++
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 6e-11
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1269 DGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNLD--PLEQHSDQEIWEVINKCH-- 1322
+G DI+ + R ++++P+ +F TV NL + + I +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 1323 ---LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370
L E R Q G S G++Q++ + R L+ + ++L++DE
Sbjct: 126 FPRLKE--RLKQL---------GGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 9e-11
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---T 772
LSGGQ+QR+ L RA+ V++ D+P S +DA L K L ++ T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK------LQRQLGVT 192
Query: 773 VLYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G ++Q G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ + KG V++ G+ GSGKS+LL ILG + + + + GK+ V ++ + +R
Sbjct: 25 LSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKE--VDYTNEKELSLLRN 81
Query: 677 ENILFGKDMRQSFY----EEVLEGCAL--------NQDIEMWADGDLSVVG--ERGIN-- 720
+ F + Q Y LE + ++ + + LS +G ++
Sbjct: 82 RKLGF---VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + + D+P +D+ +M + + ++
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VMDIFLKINEGGTSI 193
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQ 799
+ TH+ E + L MKDGK+
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 63/248 (25%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ EN+ +LKGI+ + GE + ++G +GSGKSTL+ L + P+ G++
Sbjct: 5 LRAENIKKVIR-GYE-ILKGISLSVKKGEF-VSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1267 LIDGVDISMIG---LQDLRSRLSI---------IPQD--------PMLFQGTVRTNLDPL 1306
++G ++ L LR+R + IP+ PML G
Sbjct: 62 FLEGKEVDYTNEKELSLLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGK-----PKK 115
Query: 1307 EQHSDQEIWEVINKCHLAEIVRQDQR---LLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363
E + ++++ L + + ++ L S G++Q V +AR L +
Sbjct: 116 EAK--ERGEYLLSELGLGD--KLSRKPYEL------------SGGEQQRVAIARALANEP 159
Query: 1364 RILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITV---------AHRIPTVIDNDLV 1412
+L DE T ++D+A + + E +++ V HR + D
Sbjct: 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGT-SIVMVTHERELAELTHRTLEMKDG--K 216
Query: 1413 LVLDEGKV 1420
+V + +V
Sbjct: 217 VVGEITRV 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 42/211 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ I +G V++ G GSGKS++L+ I+G + + + + + K + IR
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIK--TNDLDDDELTKIRR 82
Query: 677 ENILFGKDMRQSF--------YEEV--------LEGCALNQDIEMWADGDLSVVG--ERG 718
+ I F + Q F E V + + + A L + ER
Sbjct: 83 DKIGF---VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-ALECLKMAELEERF 138
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
N LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG +M LL +
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK-----IMQLLKKLNE 193
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
KTV+ TH + + ++ +KDG++E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 47/222 (21%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTL---IQALFRVVEP 1261
++L+N+ Y + LK + GE + ++G +GSGKST+ I L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEF-VSIMGPSGSGKSTMLNIIGCLDK---P 57
Query: 1262 SGGRILIDGVDISMIG---LQDLRSRLSI---------IPQD--------PMLFQGTVRT 1301
+ G + ID + + + L +R I IP P++F+ R
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRD-KIGFVFQQFNLIPLLTALENVELPLIFKY--RG 114
Query: 1302 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361
+ E+ + E + L E R + + S GQ+Q V +AR L
Sbjct: 115 AMSGEERR--KRALECLKMAELEE------RFANHKPNQ----LSGGQQQRVAIARALAN 162
Query: 1362 KKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAH 1401
I++ D+ T ++D+ T I Q +++ E TV+ V H
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + + L ++ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR------LHKRLGRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIP--QDPML 1294
++G GSGKSTLI + ++ GR+ + DI+ + I+ Q P
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELYHYGIVRTFQTPQP 93
Query: 1295 FQG-TVRTN-LDPLEQHSDQEIWEVINKCHLA---EIVRQDQRLLD----APVAED-GEN 1344
+ TV N L + + + K + E+V + ++L+ + + +
Sbjct: 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153
Query: 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRI 1403
S GQ +LV + R L+ +++V+DE A + + I + E ++ T + + HR+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 1404 PTVIDN-DLVLVLDEGKVL 1421
V++ D + V+ G+++
Sbjct: 214 DIVLNYIDHLYVMFNGQII 232
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 307
Query: 774 LYTTHQLEFLDAAD-LVLVMKDG 795
+ +H E DAAD ++ + +
Sbjct: 308 ILVSHDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 116
Query: 774 LYTTHQLEFLDAADLVL 790
+ +H E DAAD V+
Sbjct: 117 ILVSHDEELKDAADHVI 133
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1458 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-68 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-65 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-48 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-62 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-41 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-43 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-45 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-55 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-53 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-34 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-33 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-27 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-14 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-14 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 9e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.001 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 228 bits (584), Expect = 2e-68
Identities = 72/244 (29%), Positives = 133/244 (54%), Gaps = 2/244 (0%)
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
P G+I+++++ QYN +LK I + + + VG +G GKSTLI + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1260 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWEVI 1318
+ + G+ILIDG +I LR+++ ++ QD +LF TV+ N+ +D+E+ E
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+ + + + D V E G S GQ+Q + +AR+ L IL+LDEAT+++D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1379 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
++++IQ+ + + T + VAHR+ T+ D ++V++ G ++E + R+L+ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1439 KLVA 1442
L +
Sbjct: 248 HLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 172 bits (438), Expect = 7e-49
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I KG VA G G GKS+L++ I SG I + G V
Sbjct: 39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLV 97
Query: 665 PQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
Q + + + T++ENIL G E + + I G + VGERG+ LSG
Sbjct: 98 QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 157
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
GQKQR+ +AR +N + I D+ SA+D + + + ++ L L +T L H+L +
Sbjct: 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESII-QEALDVLSKDRTTLIVAHRLSTI 216
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
AD ++V+++G I ++G + +LIA +
Sbjct: 217 THADKIVVIENGHIVETGTHRELIA--KQGAYEHL 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 218 bits (558), Expect = 5e-65
Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 3/239 (1%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+G +E N+ Y L+ I P K + +VGR+GSGKST+ + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCH 1322
IL+DG D+ L LR++++++ Q+ LF TV N E++S ++I E +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
+ + + LD + E+G S GQRQ + +AR LL+ IL+LDEAT+++DT ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
IQ + E T + +AHR+ T+ D ++V+++G ++E + +LL +++L
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 170 bits (431), Expect = 6e-48
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 27/260 (10%)
Query: 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSV 632
D K+ I T ++ + + RE P ++ + +KI G VA+ G
Sbjct: 1 DEGKRVIDRATGD-----LEFRNVTFTYPGRE----VPALRNIN-LKIPAGKTVALVGRS 50
Query: 633 GSGKSSLLSSILGEIP------RISGAAIK------VHGKKAYVPQSSWIQTGTIRENIL 680
GSGKS++ S I + G ++ + + A V Q+ + T+ NI
Sbjct: 51 GSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 110
Query: 681 FG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ ++ + EE I +G +++GE G+ LSGGQ+QRI +ARA+ +
Sbjct: 111 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
S + I D+ SA+D + + L L +T L H+L ++ AD ++V++DG I
Sbjct: 171 SPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229
Query: 799 QSGKYEDLIADQNSELVRQM 818
+ G + +L+A + Q+
Sbjct: 230 ERGTHSELLA--QHGVYAQL 247
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 210 bits (537), Expect = 2e-62
Identities = 72/235 (30%), Positives = 131/235 (55%), Gaps = 1/235 (0%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWEVINKCHLAEI 1326
IDG D+++ LR ++ ++ QD +L ++ N+ S +++ +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386
+ + + + V E G S GQRQ + +AR L+ +IL+ DEAT+++D +++VI +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+ + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 151 bits (383), Expect = 1e-41
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGKS+L I + + G V
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 665 PQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
Q + + +I +NI M + + I +G ++VGE+G LSG
Sbjct: 83 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 142
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
GQ+QRI +ARA+ +N + IFD+ SA+D + + + + + +TV+ H+L +
Sbjct: 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM-RNMHKICKGRTVIIIAHRLSTV 201
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
AD ++VM+ GKI + GK+++L+++ S
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESL 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (509), Expect = 2e-58
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 6/245 (2%)
Query: 1202 WPSSGKIELENLLVQY-NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1260
G ++ +++ Y N +VL+G+T T + +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1261 PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVI 1318
P+GG++L+DG + + L +++ + Q+P +F +++ N+ ++ + +EI
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
K + + D V E G S GQRQ V LAR L++K +L+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSS 1436
+ ++Q + E E +V+ + + V D +L L+ G + E + +QL+E
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGC 244
Query: 1437 FSKLV 1441
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 1e-43
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 21/218 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ G A+ G GSGKS++ + + +G + + GK A V
Sbjct: 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQVAAV 93
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE--EVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + +++ENI +G + + E + I G + V E G LS
Sbjct: 94 GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS 153
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GGQ+Q + LARA+ V I DD SA+DA++ + Q L + ++VL T L
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE-QLLYESPERYSRSVLLITQHL 212
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
++ AD +L ++ G I + G ++ L+ M
Sbjct: 213 SLVEQADHILFLEGGAIREGGTHQQLME--KKGCYWAM 248
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 196 bits (499), Expect = 3e-57
Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 4/238 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINKCHLAE 1325
IDG I I L++ RS++ + QD + GT+R NL ++D+++W+V++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
V L+ V E G S GQRQ + +AR L+ +IL+LDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443
+ T + +AHR+ T++D D + +++G++ +L+ ++K V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 160 bits (407), Expect = 6e-45
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ S +A G G GKS++ S + +G I + G+ +V
Sbjct: 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFV 81
Query: 665 PQSSWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G D +VL+ +E D + VGERG+ +S
Sbjct: 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV-QKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ AD + ++ G+I SGK+ +L+A L +
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA--THPLYAKY 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 192 bits (490), Expect = 1e-55
Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 17/281 (6%)
Query: 559 TKVSLYRIQEF----IKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKL 614
T + + + F E +K + K S ++ P +K
Sbjct: 1 TGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN------PVLKN 54
Query: 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGT 674
+ + I KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GT
Sbjct: 55 IN-LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-IKHSGRVSFCSQFSWIMPGT 112
Query: 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
I+ENI+FG + Y+ V++ C L QDI +A+ D +V+GE G+ LSGGQ+ RI LARA
Sbjct: 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794
VY ++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 795 GKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK 835
G G + +L + + ++ + D + E++
Sbjct: 233 GSSYFYGTFSELQS-LRPDFSSKLMGY----DTFDQFTEER 268
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 187 bits (476), Expect = 1e-53
Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 20/272 (7%)
Query: 1174 ISVERILQFTNIPSEAPL--VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCT 1231
I +E + F L V +++ + +L + NP VLK I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
+ + + G TGSGK++L+ + +E S G I G R+S Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1292 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
+ GT++ N+ + + V+ C L + + + + + E G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1352 LVCLARVLLKKKRILVLDEATASIDTAT-DNVIQQTIREETSRCTVITVAHRIPTVIDND 1410
+ LAR + K + +LD +D T + V + + + + T I V ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1411 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442
+L+L +G Y + +L SKL+
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 130 bits (328), Expect = 3e-34
Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 31/262 (11%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K+ + +L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1267 LIDGVDISMIGLQD-------------LRSRLSIIPQDPMLFQG-TVRTNLD--PLEQH- 1309
+++G +I+++ +D LR+RL+++ Q L+ TV N+ P++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1310 -SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368
S + E K V D+R S GQ+Q V +AR L + +L+
Sbjct: 120 LSKHDARERALK--YLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLF 173
Query: 1369 DEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1426
DE T+++D + + +++ T++ V H + + V+ L +GK+ E P
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1427 RQLLEDNSSSFSKLVAEFLRRT 1448
Q+ + S + +FL+ +
Sbjct: 234 EQVFGNPQSPR---LQQFLKGS 252
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 2e-24
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 28/236 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSW 669
++ G +++ GS GSGKS+ L I GA I V+G+ + +
Sbjct: 23 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADK 81
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQ-----DIEMWADGDLSVVG--ER 717
Q +R + F + E V+E D A L+ VG ER
Sbjct: 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 141
Query: 718 GIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
LSGGQ+QR+ +ARA+ DV +FD+P SA+D + + KT
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 201
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ-MKAHRKSLD 826
++ TH++ F + V+ + GKIE+ G E + + S ++Q +K K L+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLE 257
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 128 bits (324), Expect = 8e-34
Identities = 58/246 (23%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++LENL ++ + + T + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVINKCH 1322
D++ L +S++ Q ++ TV N+ PL+ EI + +
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--W 119
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1382
AE+++ ++ L+ A+ S GQRQ V +AR ++ + +L++DE +++D
Sbjct: 120 AAELLQIEEL-LNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 1383 IQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
++ I++ + + T I V H + D + V++ G++L+ SP ++ +S F
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF-- 232
Query: 1440 LVAEFL 1445
VA F+
Sbjct: 233 -VATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 3e-27
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 33/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G + + G G GK++ L I G G I + + V Q
Sbjct: 27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQ 85
Query: 667 SSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGI 719
S + T+ ENI F +++ +E I+ ++
Sbjct: 86 SYAVWPHMTVYENIAFPLKIKKFPKDE----------IDKRVRWAAELLQIEELLNRYPA 135
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ DV + D+P S +DA + + L + T +Y T
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVT 194
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H D + VM G++ Q G ++ NS V
Sbjct: 195 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 235
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 126 bits (319), Expect = 3e-33
Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ Y + LK + + + ++G +GSGKST++ + + +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1266 ILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEV 1317
+ ID + + + +L R ++ + Q L T N++ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1318 INKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
+ ++ ++R + + S GQ+Q V +AR L I++ D+ T ++D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1377 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1427
+ T I Q +++ E TV+ V H I + ++ L +G+V + R
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (259), Expect = 2e-25
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ I +G V++ G GSGKS++L+ I + + + + + K
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 662 -AYVPQSSW-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V Q I T EN+ + E + A+ + +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + + L L + KTV+ T
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVT 203
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H + + ++ +KDG++E+ K
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEK 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 122 bits (308), Expect = 9e-32
Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 22/249 (8%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L N+ + L ++ P + GV+G +G+GKSTLI+ + + P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1266 ILIDGVDISMIGLQD---LRSRLSIIPQDPMLF-QGTVRTNLD-PLEQH--SDQEIWEVI 1318
+L+DG +++ + + R ++ +I Q L TV N+ PLE E+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1378
+ L +V + P N S GQ+Q V +AR L ++L+ DEAT+++D A
Sbjct: 122 TE--LLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1379 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
T I + +++ T++ + H + V D V V+ G+++E D+ ++ +
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 234
Query: 1436 SFSKLVAEF 1444
+F
Sbjct: 235 PL---AQKF 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 9e-23
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + G V G+ G+GKS+L+ + G+ + V G++
Sbjct: 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQI 84
Query: 662 AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ Q + + + T+ N+ KD + E+L L + +
Sbjct: 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS----- 139
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D A T + L + T
Sbjct: 140 ------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+L TH+++ D V V+ +G++ + ++ + + L ++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 1e-28
Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 28/236 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++L+++ L ++ + + +VG G+GKSTL+ + + G I
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNL-DPLEQHSDQEIWEVINKCHLAE 1325
G + L + + Q F V L + E+ +A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN-----DVAG 111
Query: 1326 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK-------KKRILVLDEATASIDTA 1378
+ LD + S G+ Q V LA V+L+ ++L+LDE S+D A
Sbjct: 112 ALA-----LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1379 TDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1432
+ + + + + ++ +H + + + +L GK+L ++L
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 19/209 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
++ G + + G G+GKS+LL+ + G +I+ G+ ++ +
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSATKLALHRAYL 77
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERGINLSGGQKQRIQLA 732
+ + + E+ D +G LSGG+ QR++LA
Sbjct: 78 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEF- 782
V + + D+P +++D + L K ++ L Q ++ ++H L
Sbjct: 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--ILSALCQQGLAIVMSSHDLNHT 195
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
L A ++K GK+ SG+ E+++ N
Sbjct: 196 LRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (278), Expect = 1e-27
Identities = 51/251 (20%), Positives = 106/251 (42%), Gaps = 16/251 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ EN++ + L G++ + ++G GSGKSTLI + ++ GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1268 IDGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHL-- 1323
+ DI+ +L + Q P + TV NL E + +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1324 --AEIVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASID 1376
E+V + ++L+ + S GQ +LV + R L+ +++V+DE A +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1377 TATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+ I + E ++ T + + HR+ V++ D + V+ G+++ + +++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
Query: 1435 SSFSKLVAEFL 1445
S K+V ++
Sbjct: 243 SD-PKVVEIYI 252
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (262), Expect = 1e-25
Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 27/227 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------Y 663
+ + KG + G GSGKS+L++ I G + G + K
Sbjct: 25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVR 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI--- 719
Q+ ++ T+ EN+L G+ L E + ++ +
Sbjct: 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 143
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773
LSGGQ + +++ RA+ +N + + D+P + V +F L T
Sbjct: 144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
Query: 774 LYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD-QNSELVRQM 818
L H+L+ L+ D + VM +G+I G+ E+ I + + V ++
Sbjct: 204 LIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 109 bits (274), Expect = 3e-27
Identities = 46/248 (18%), Positives = 112/248 (45%), Gaps = 19/248 (7%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G + +++L + +LKGI+ + G++G G+GK+T ++ + +++PS G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQH---SDQEIWEVINKC 1321
+ + G ++ + ++R +S +P++ ++ L + S EI E++ +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER- 116
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
EI +++ D +S G + + +AR L+ R+ +LDE T+ +D
Sbjct: 117 -ATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+++ +++ + I V+ ++ D + ++ G ++E + +L E +
Sbjct: 171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN-- 228
Query: 1440 LVAEFLRR 1447
+ E
Sbjct: 229 -IEEVFEE 235
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 97.4 bits (242), Expect = 5e-23
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+I +G + G G+GK++ L I I SG P + E
Sbjct: 23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82
Query: 678 NILFGKDMRQSFYEEVLEGCAL--NQDIEMWADGDLSVVG------ERGINLSGGQKQRI 729
++M+ Y + G + +IE + + G +R S G +++
Sbjct: 83 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL 142
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+ARA+ N + I D+P S +D + K T+L ++H + ++ D
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ ++ +G I ++G E+L ++ + +
Sbjct: 203 IALIHNGTIVETGTVEELKERYKAQNIEE 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 108 bits (272), Expect = 6e-27
Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 19/248 (7%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ L ++ + ++ ++ + + ++G +G GK+T ++ + + EPS G+I
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW-EVINKCHLAE 1325
I ++ + + P+D + L P D + + K E
Sbjct: 61 YIGDKLVAD-----PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1326 IVRQDQRLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1380
I ++ + + + + N S GQRQ V L R +++K ++ ++DE +++D
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1381 NVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437
++ +++ T I V H + D + V++ G + + SP ++ + +++F
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 1438 SKLVAEFL 1445
VA F+
Sbjct: 236 ---VAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 106 bits (265), Expect = 5e-26
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 15/215 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+++ G + + G G GK++ L I G I + K +VP
Sbjct: 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALN-QDIEMWADGDLSVVGERGI------NLSGG 724
+ L+ L+ + Q+I+ ++G + LSGG
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYTTHQLEF- 782
Q+QR+ L RA+ V++ D+P S +DA + + + T +Y TH
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ D + VM G ++Q G +++ + V
Sbjct: 204 MTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 1e-26
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 21/245 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++L+N+ + + V K I + + VG +G GKSTL++ + + + G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1323
I ++ + ++ Q L+ +V N+ L + I + +N+ +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ--V 114
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
AE+++ LD S GQRQ V + R L+ + + +LDE +++D A +
Sbjct: 115 AEVLQLAHL-LDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169
Query: 1384 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ I + T+I V H + D ++VLD G+V + P +L + F
Sbjct: 170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF--- 226
Query: 1441 VAEFL 1445
VA F+
Sbjct: 227 VAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 99.3 bits (247), Expect = 9e-24
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 15/212 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V G G GKS+LL I G I+ + + K+ + G + +
Sbjct: 21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQ 79
Query: 678 NILFGKDMRQSFYEEVLEGCALN----QDIEMWADGDLSVVGERGI------NLSGGQKQ 727
+ + E + G L + I + V+ + LSGGQ+Q
Sbjct: 80 SYALYPHLS--VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 137
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA- 785
R+ + R + + V++ D+P S +DA + + T++Y TH
Sbjct: 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 197
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD ++V+ G++ Q GK +L V
Sbjct: 198 ADKIVVLDAGRVAQVGKPLELYHYPADRFVAG 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 106 bits (266), Expect = 3e-26
Identities = 52/247 (21%), Positives = 109/247 (44%), Gaps = 16/247 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+I ++N+ + + L + ++ G++G +G+GK+T ++ + + PS G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1267 LIDGVDISMIGLQDLRSR---LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
D ++ G + + ++ Q L+ NL E + ++K +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117
Query: 1324 AEIVRQDQRLLDAPVAEDGE--NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1381
+ V + ++LD + S Q+Q V LAR L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1382 VIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
+ ++E T++ V+H + D V VL +GK+++ P L ++ S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ- 236
Query: 1439 KLVAEFL 1445
VA +
Sbjct: 237 --VASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 89.8 bits (222), Expect = 2e-20
Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 14/214 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+ I G + + G G+GK++ + I G + +GK P+ I
Sbjct: 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQ 725
+ ++ + ++I + ++ + LSG Q
Sbjct: 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLD 784
+QR+ LARA+ + + + D+PFS +DA T+L +H +
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
A AD V V+ GK+ Q GK EDL + S V
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (257), Expect = 2e-25
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P G I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEI--WEVINKCHL 1323
+ +GV I ++ ++ +P++ ++ + +V L + ++ E+++
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
E++ ++L S G + V LA LL I VLD+ +ID + + +
Sbjct: 114 VEVLDLKKKL---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 1384 QQTIREETSRCTVITVAHR 1402
++I E ++ ++ R
Sbjct: 165 LKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.7 bits (212), Expect = 2e-19
Identities = 35/182 (19%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSS- 668
M I KG+ V G G GK++LL +I + + I +G ++P+
Sbjct: 22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITKVKGKIFFLPEEII 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ ++ + + + + N+ ++ ++ + ++ LS G +R
Sbjct: 81 VPRKISVEDYLKAVASLYGVKVNK-------NEIMDALESVEVLDLKKKLGELSQGTIRR 133
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAA 786
+QLA + N+++Y+ DDP A+D + H + ++ +L +K ++ + +L + D
Sbjct: 134 VQLASTLLVNAEIYVLDDPVVAIDEDS-KHKVLKSILEILKEKGIVIISSREELSYCDVN 192
Query: 787 DL 788
+
Sbjct: 193 EN 194
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (251), Expect = 2e-24
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+E+L ++ L ++ + ++G TG+GK+ ++ + P GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
+DG D++ L + ++ + Q+ LF +++ + E + K + V
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFP-----HMNVKKNL---EFGMRMKKIKDPKRV 108
Query: 1328 RQDQRLLDAPVAED--GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1385
R L D S G++Q V LAR L+ +IL+LDE +++D T ++
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 1386 TIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442
+ + ++ TV+ + H D + V+ +GK+++ P ++ E VA
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VA 225
Query: 1443 EFL 1445
F+
Sbjct: 226 SFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 99.0 bits (246), Expect = 1e-23
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+K+ G + G G+GK+ L I G I + GK A+V Q
Sbjct: 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ S +++N+ FG M++ + + A + IE D + LSGG+
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTLSGGE 132
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LARA+ +N + + D+P SA+D T + + ++ ++ TVL+ TH
Sbjct: 133 QQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD + V+ DGK+ Q GK E++ V
Sbjct: 193 IMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 100 bits (250), Expect = 5e-24
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+K+ +G V + G+ G+GK++ LS+I G + G I P + G
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIE------MWADGDLSVVGER----GINLSGGQKQ 727
+ YE ++ G +D E W + ER G LSGG++Q
Sbjct: 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ 146
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF-LDA 785
+ + RA+ S + + D+P + + + + + T+L L
Sbjct: 147 MLAIGRALMSRPKLLMMDEPSLGLAPIL-VSEVFEVIQKINQEGTTILLVEQNALGALKV 205
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQ 810
A V++ G+I GK +L+ ++
Sbjct: 206 AHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 44/231 (19%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1268 IDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL--DPLEQHSDQEIWEVINKCHL 1323
+G DI+ + ++++P+ +F + TV NL + + I + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW--I 122
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1383
+ + + L S G++Q++ + R L+ + ++L++DE + + + +
Sbjct: 123 FSLFPRLKERLKQLGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1384 QQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432
+ I++ T++ V + VL+ G+++ +LL++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-- 1295
++G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPH 84
Query: 1296 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355
R L E + + +AE + LD A S G+RQ V L
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVRE--MAEKLGIAHL-LDRKPAR----LSGGERQRVAL 137
Query: 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLV 1412
AR L+ + R+L+LDE +++D T V+ + +R ++ V H + D V
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 1413 LVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
V+ G+++E ++L + VAEFL
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNG----EVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 89.7 bits (222), Expect = 2e-20
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
M + G G+GKS L I G + G ++++G G + ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYA 80
Query: 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLARA 734
+ + + +G + LSGG++QR+ LARA
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEF-LDAADLVLVM 792
+ + + D+P SAVD T L ++ +L+ TH L AD V VM
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 793 KDGKIEQSGKYEDLIADQNSE 813
+G+I + GK ++L + +N E
Sbjct: 201 LNGRIVEKGKLKELFSAKNGE 221
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 76.6 bits (187), Expect = 2e-16
Identities = 15/186 (8%), Positives = 43/186 (23%), Gaps = 28/186 (15%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296
KI + G G GK+TL++ + + + V + ++ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1297 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356
+ + + +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1416
+++++++DE + V+ + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1417 EGKVLE 1422
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.4 bits (171), Expect = 3e-14
Identities = 17/178 (9%), Positives = 45/178 (25%), Gaps = 17/178 (9%)
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKD 684
K+ + G G GK++L+ I+ + ++ T +R+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLG----------------KRAIGFWTEEVRDPETKKRT 45
Query: 685 MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
+ E + ++ V + A V I
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
D+ ++ + + V+ T + + + + +
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.8 bits (172), Expect = 2e-14
Identities = 21/179 (11%), Positives = 52/179 (29%), Gaps = 7/179 (3%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+ + + G G GK+TLI V++ SG + + G + + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1296 QGTVRTNLDPL------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349
+ D +E + L V ++ +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1408
+ + R L ++L ++++ + + +T +R + D
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLPD 179
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 53.4 bits (126), Expect = 9e-08
Identities = 34/308 (11%), Positives = 99/308 (32%), Gaps = 8/308 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S L + V + + +
Sbjct: 15 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---VLLWMPLVVIGLMILRGI 71
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIH 393
T + + + +V + ++ M + A +++
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
+ V+ +++ L+ + ++ + + + + +RF S+ ++
Sbjct: 132 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF-----WAS 508
+ T+ + ++ K + + R ++ + + SA + AS
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 509 PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568
L V+ + LT+G + ++ L P+ +L + + + + +
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 569 FIKEDNQK 576
+ + +K
Sbjct: 312 ILDSEQEK 319
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 33/309 (10%), Positives = 88/309 (28%), Gaps = 9/309 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS----YHYGLVLASVFLFAKT 329
+ + + P LI + + H ++ +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF 389
V + + A ++ + +Y A+ ++ + +I+ + +
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+I + + ++I + L + + R + E
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 450 KDARIKATSETLKSMR-----VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504
A + + ++ + + + R S A
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
+ VI G + + +T G + + + +L P+ L + + Q+ S+
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMD 312
Query: 565 RIQEFIKED 573
R+ + I ED
Sbjct: 313 RVFQLIDED 321
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 40.3 bits (92), Expect = 0.001
Identities = 41/313 (13%), Positives = 99/313 (31%), Gaps = 13/313 (4%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLIGVFIFLSGGSSFF 943
YK + ++ ++ + M I +A D + E++ + I + F
Sbjct: 12 YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIF 70
Query: 944 ILGRAV-------LLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQST 996
++ R L + K + + + F+ + ++++R D
Sbjct: 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ 130
Query: 997 VDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056
I L + I ++ + +M ++ L I I + R+L R
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116
A + E + G + ++ F E+ ++ + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 1117 INLLFNFAFFLVLIILVTLPRS-AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMIS 1175
IN + + +V+ + L S +I Y L ++ + + S
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310
Query: 1176 VERILQFTNIPSE 1188
++R+ Q + +
Sbjct: 311 MDRVFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1458 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.57 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.89 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.86 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.83 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.53 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.43 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.29 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.26 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.24 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.14 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.97 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.94 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.64 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.27 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.25 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.19 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.03 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.95 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.76 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.75 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.53 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.42 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.28 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.28 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.22 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.2 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.11 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.07 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.06 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.03 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.98 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.96 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.94 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.87 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.86 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.85 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.82 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.79 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.78 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.72 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.71 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.68 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.61 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.6 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.58 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.47 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.34 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.22 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.12 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.1 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.09 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.09 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.0 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.96 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.92 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 93.75 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.64 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.63 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.59 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.55 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.52 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.5 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.38 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.32 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.25 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.19 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.18 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.05 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.93 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.92 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.88 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.78 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.74 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.74 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.62 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.57 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.43 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.33 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.33 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.33 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.3 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.23 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.17 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.15 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.11 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.08 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.08 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.05 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.02 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.98 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.96 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.94 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.93 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.93 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.92 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.85 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.78 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.77 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.67 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.66 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.65 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.58 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.54 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.54 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.52 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.49 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.42 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.41 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.36 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.22 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.22 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.15 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.13 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.09 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.07 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.05 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.05 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.98 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.86 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.79 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.78 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.68 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.66 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.62 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.59 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.56 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.55 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.46 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.44 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.39 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.34 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.34 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.18 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.01 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.98 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.93 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.84 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.73 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.57 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.57 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.5 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.5 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.46 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.41 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.38 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.38 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.36 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.36 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.34 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.28 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.21 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.13 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.1 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.05 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.03 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.99 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.96 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.91 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.85 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.8 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.68 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.61 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.57 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.47 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.47 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.44 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.32 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.27 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.27 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.24 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.24 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.23 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.18 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.17 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.16 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.06 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.96 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.89 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.81 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.77 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.54 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.5 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.47 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.42 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.36 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.3 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.26 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.23 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.15 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.11 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.07 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.04 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.87 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.84 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.73 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.66 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.54 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.53 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 86.52 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.52 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.46 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.41 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.39 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.39 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.33 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.32 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.25 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.24 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.18 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.17 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.07 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.98 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.9 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.79 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 85.68 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.34 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.34 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.29 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.04 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.96 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.85 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.81 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 84.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 84.79 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.66 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.65 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.57 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.56 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.52 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.5 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.48 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.48 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.33 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.3 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.27 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.21 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.15 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.13 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.1 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 83.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.84 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.71 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 83.7 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.61 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.53 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.25 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.21 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.17 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.15 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 83.12 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.09 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.06 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.04 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.03 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.02 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.99 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.97 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.96 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.87 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.72 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.58 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.38 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.21 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.2 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 82.01 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.98 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.93 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 81.75 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.75 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 81.64 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.62 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.61 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.58 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 81.56 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.56 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.53 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.42 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.38 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.16 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.11 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.97 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 80.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.9 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.79 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 80.75 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.53 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 80.48 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.42 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.23 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.09 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=488.13 Aligned_cols=237 Identities=30% Similarity=0.512 Sum_probs=229.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999788741308
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~is 1286 (1458)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 981677776565777038699-9999999999998492899984001457534479998991599999999986059987
Q 000505 1287 IIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~I 1365 (1458)
+|||+|.+|++|||+|+.... ..++++++++++.+++.+++..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998476779999989999999998649947899724912341029899994987978459347862199848999999
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~~~ 1443 (1458)
||||||||++|+.|+..|.+.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|++|++++++.|.+|++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=486.76 Aligned_cols=240 Identities=30% Similarity=0.501 Sum_probs=230.1
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99862799944688479989502211689618949999889999877999998216779973899969617999978874
Q 000505 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1458)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1282 (1458)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 130898167777656577703869-9999999999999849289998400145753447999899159999999998605
Q 000505 1283 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1283 s~isiIpQdp~LF~gTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1361 (1458)
++++++||+|.+|+||||+|+... ...+|+++++|++.+++.+++..+|+|||+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99879984767799999899999999986499478997249123410298999949879784593478621998489999
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1441 (1458)
+|+||+||||||++|++|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|++|++ +++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHHHHH
T ss_conf 9989998376544797799999999998753888999968999998599999998999999889999986-884999999
Q ss_pred HH
Q ss_conf 99
Q 000505 1442 AE 1443 (1458)
Q Consensus 1442 ~~ 1443 (1458)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=477.79 Aligned_cols=239 Identities=31% Similarity=0.502 Sum_probs=229.1
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98627999446884799895022116896189499998899998779999982167799738999696179999788741
Q 000505 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1458)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs 1283 (1458)
..|.|+|+||+|+|+...+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 30898167777656577703869--9999999999999849289998400145753447999899159999999998605
Q 000505 1284 RLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1284 ~isiIpQdp~LF~gTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1361 (1458)
+++++||+|.+|++|+++|+... ..+++++++++++.+++.+++..+|+|||+.++++|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99879984767799999899999999986499478997249123410298999949879784593478621998489999
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1441 (1458)
+|+||+||||||++|+.|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|+|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 99
Q 000505 1442 AE 1443 (1458)
Q Consensus 1442 ~~ 1443 (1458)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=465.83 Aligned_cols=239 Identities=27% Similarity=0.429 Sum_probs=225.0
Q ss_pred CCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 998627999446884799-8950221168961894999988999987799999821677997389996961799997887
Q 000505 1203 PSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1458)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1281 (1458)
+-.|.|+|+||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.|++.++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4130898167777656577703869--99999999999998492899984001457534479998991599999999986
Q 000505 1282 RSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1282 Rs~isiIpQdp~LF~gTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL 1359 (1458)
|+++++|||+|.+|++|+|+|+... ...++++++++.+++++.+++..+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 059987998476779999989999999998649--947899724912341029899994987978459347862199848
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f 1437 (1458)
+++|+|++||||||++|+.|+..|++.|++..+ ++|+|+||||++.+..||||+||++|+|+|.|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000505 1438 SKLVA 1442 (1458)
Q Consensus 1438 ~~l~~ 1442 (1458)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=472.09 Aligned_cols=234 Identities=29% Similarity=0.529 Sum_probs=224.1
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79994468847998950221168961894999988999987799999821677997389996961799997887413089
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isi 1287 (1458)
|+++||+|+|+.+ +++|+||||++++||++||+||||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8167777656577703869--99999999999998492899984001457534479998991599999999986059987
Q 000505 1288 IPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1458)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~I 1365 (1458)
|||||.+|++|+|+|+... ...+++++|++++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998476779999989999999998649947899724912341029899994987978459347862199848999999
Q 000505 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1443 (1458)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~~~ 1443 (1458)
|+||||||++|+.++..|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=405.36 Aligned_cols=224 Identities=30% Similarity=0.435 Sum_probs=207.4
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC------
Q ss_conf 984089963499707865456788533357-6785089499998158999368998870776589984899879------
Q 000505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1458)
Q Consensus 587 ~~~~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g------ 659 (1458)
....|+++|++|+|+++ ..++|+| ||++++|++++|+|++|||||||+++|+|.+++.+|+| .++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~ 85 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDF 85 (255)
T ss_dssp CSCCEEEEEEEECSCSS------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE-EETTEEGGGS
T ss_pred CCCEEEEEEEEEEECCC------CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEECCCC
T ss_conf 78879999889995999------9760644389983998999988999809999999971278630001-5399875307
Q ss_pred -------EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------7789817787888758899723977-89789999999810003688610798630268998788689999999
Q 000505 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1458)
Q Consensus 660 -------~iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~L 731 (1458)
.++||+|+|+++++||+|||.||.+ .+.++..++++.+++.++++.+|+|.+|.+|++|.+|||||||||+|
T Consensus 86 ~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~i 165 (255)
T d2hyda1 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 165 (255)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred CHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 88886341456510156899879999851586799999999999969799997362420103338889849999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHHCC
Q ss_conf 99871399899980877778965699999999988708967999705632010178899992986988036035664110
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811 (1458)
Q Consensus 732 ARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~ 811 (1458)
|||++++|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .+
T Consensus 166 ARal~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~ 243 (255)
T d2hyda1 166 ARIFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQ 243 (255)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TT
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CC
T ss_conf 999855998999837654479779999999-9998753888999968999998599999998999999889999986-88
Q ss_pred HHHHHHHH
Q ss_conf 69999999
Q 000505 812 SELVRQMK 819 (1458)
Q Consensus 812 ~~~~~l~~ 819 (1458)
+.|.++..
T Consensus 244 ~~y~~l~~ 251 (255)
T d2hyda1 244 GAYEHLYS 251 (255)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHHH
T ss_conf 49999999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=403.08 Aligned_cols=223 Identities=26% Similarity=0.400 Sum_probs=207.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089963499707865456788533357-6785089499998158999368998870776589984899879---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1458)
.|+++|++|+|+++ ..+.|+| ||++++|++++|+|++|||||||+++|+|.++|.+|+| .++|
T Consensus 1 eI~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~ 73 (241)
T d2pmka1 1 DITFRNIRFRYKPD------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEEESSTT------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHH
T ss_pred CEEEEEEEEEECCC------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEEECCCCHH
T ss_conf 92999999990899------9603742489984999999999999989999999973578888899-9999994400246
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----7789817787888758899723977-89789999999810003688610798630268998788689999999998
Q 000505 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 ----~iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARA 734 (1458)
.++||+|+|+++++||+|||.|+.+ .+.+++.++++.|.+.++++.+|.|..|.+|++|.+|||||||||+||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARa 153 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153 (241)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55352889824465578400035223575543888999999975578887632013443278788669889898754434
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHHCCHHH
Q ss_conf 71399899980877778965699999999988708967999705632010178899992986988036035664110699
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1458)
Q Consensus 735 ly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~ 814 (1458)
++++|+|++||||||+||+.++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y 232 (241)
T d2pmka1 154 LVNNPKILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 232 (241)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHH
T ss_pred HHCCCCHHHHHCCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 441651355647765559899999999-9999858998999978899998499999998999999889999982998789
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000505 815 VRQMKA 820 (1458)
Q Consensus 815 ~~l~~~ 820 (1458)
.++...
T Consensus 233 ~~l~~~ 238 (241)
T d2pmka1 233 SYLYQL 238 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=394.68 Aligned_cols=223 Identities=29% Similarity=0.414 Sum_probs=207.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------
Q ss_conf 4089963499707865456788533357-6785089499998158999368998870776589984899879--------
Q 000505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1458)
Q Consensus 589 ~~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g-------- 659 (1458)
..|+++|++|+|+.. ..+.|+| ||++++|+++||+|++|||||||+++|+|.++|.+|+| .++|
T Consensus 12 g~I~~~nvsf~Y~~~------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~ 84 (253)
T d3b60a1 12 GDLEFRNVTFTYPGR------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTL 84 (253)
T ss_dssp CCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETTEETTTBCH
T ss_pred EEEEEEEEEEEECCC------CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCCCCCHHHH
T ss_conf 079999889992999------9763533289985999999999999859999999862168884689-878801211106
Q ss_pred -----EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----778981778788875889972397--7897899999998100036886107986302689987886899999999
Q 000505 660 -----KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 660 -----~iayv~Q~~wi~~~TIreNIlfg~--~~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LA 732 (1458)
.++|++|+|+++++|+++|+.+|. ..+.+++.++++.|.+.++++.+|+|.+|.+|++|.+|||||||||+||
T Consensus 85 ~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 65420687995025447862024332057220899999999999817999973554410143488898499999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHHCCH
Q ss_conf 98713998999808777789656999999999887089679997056320101788999929869880360356641106
Q 000505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812 (1458)
Q Consensus 733 RAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~ 812 (1458)
||++++|+|++||||||+||+.+...+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .++
T Consensus 165 Ral~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~~ 242 (253)
T d3b60a1 165 RALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHG 242 (253)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HTS
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCC
T ss_conf 99954998899516444589889999999-9987522788999988799998599999998999999889999986-893
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000505 813 ELVRQMKA 820 (1458)
Q Consensus 813 ~~~~l~~~ 820 (1458)
.|.++.+.
T Consensus 243 ~y~~l~~~ 250 (253)
T d3b60a1 243 VYAQLHKM 250 (253)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999997
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=396.18 Aligned_cols=219 Identities=23% Similarity=0.332 Sum_probs=192.5
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 86279994468847998950221168961894999988999987799999821677997389996961799997887413
Q 000505 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1458)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~ 1284 (1458)
.+.|.|+|+++.+ .+||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 08981677776565777038699999999999999849289998400145753447999899159999999998605998
Q 000505 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1458)
Q Consensus 1285 isiIpQdp~LF~gTIR~NLdp~~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ 1364 (1458)
++++||+|.+|++|+|+|+.+...+.+.+++++++.+++.+.+..+|+++++.+++.|.+||||||||++||||++++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 7998476779999989999999-9986499478997249123410298999949879784593478621998489999
Q 000505 1365 ILVLDEATASIDTATDNVIQQT-IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441 (1458)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~-I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1441 (1458)
||+||||||++|+.++..|.+. +....+++|+|+|+||++.+..||||++|++|+++++|+|++|++. .+.|.+..
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=388.51 Aligned_cols=224 Identities=25% Similarity=0.345 Sum_probs=202.1
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE------
Q ss_conf 84089963499707865456788533357-67850894999981589993689988707765899848998797------
Q 000505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (1458)
Q Consensus 588 ~~~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~------ 660 (1458)
+..|+++|++|+|+.. +..+.|+| ||++++|++++|+|++|||||||+++|+|.++|.+|+| .++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I-~i~g~~i~~~~ 82 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNR-----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQYE 82 (251)
T ss_dssp CCCEEEEEEEECCTTS-----TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGBC
T ss_pred CCEEEEEEEEEECCCC-----CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCHHH
T ss_conf 3369999989988999-----99976744389984998999999999849999999861437876899-88998531101
Q ss_pred -------EEEECCCCCCCCCCHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------7898177878887588997239778--9789999999810003688610798630268998788689999999
Q 000505 661 -------KAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1458)
Q Consensus 661 -------iayv~Q~~wi~~~TIreNIlfg~~~--~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~L 731 (1458)
++||+|+|+++++||+|||.||.+. +..+..+..+.+++...++.+|+|.+|.++++|.+|||||||||+|
T Consensus 83 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvai 162 (251)
T d1jj7a_ 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVAL 162 (251)
T ss_dssp HHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEE
T ss_conf 37888776540456500276346554542101302788999999998999998561211136751676689547048998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHH
Q ss_conf 9987139989998087777896569999999998870--89679997056320101788999929869880360356641
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1458)
Q Consensus 732 ARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l--~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~ 809 (1458)
|||++++|+|++||||||+||+++...+++. +..+. .++|+|+|||+++.+..||+|++|++|+|++.|+++|+++
T Consensus 163 ARal~~~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~- 240 (251)
T d1jj7a_ 163 ARALIRKPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME- 240 (251)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-
T ss_pred EECCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-
T ss_conf 6044568707871675765685368999999-99976506989999959799998599999998999999889999985-
Q ss_pred CCHHHHHHHH
Q ss_conf 1069999999
Q 000505 810 QNSELVRQMK 819 (1458)
Q Consensus 810 ~~~~~~~l~~ 819 (1458)
.++.|.++++
T Consensus 241 ~~~~y~~l~~ 250 (251)
T d1jj7a_ 241 KKGCYWAMVQ 250 (251)
T ss_dssp HTSHHHHHHC
T ss_pred CCCHHHHHHC
T ss_conf 9758899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=389.48 Aligned_cols=220 Identities=28% Similarity=0.447 Sum_probs=203.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89963499707865456788533357-6785089499998158999368998870776589984899879----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g---------- 659 (1458)
++++|++|+|+++ .+.|+| ||++++|+++||+|++|||||||+++|+|.++|.+|++ .++|
T Consensus 2 le~knvsf~Y~~~-------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLEN 73 (242)
T ss_dssp EEEEEEEECSSSS-------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSC
T ss_pred EEEEEEEEECCCC-------CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-EECCEEECCCCHHH
T ss_conf 7999889987999-------841422589985999999999999979999999999609898779-88998844246788
Q ss_pred ---EEEEECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---7789817787888758899723977--89789999999810003688610798630268998788689999999998
Q 000505 660 ---KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 660 ---~iayv~Q~~wi~~~TIreNIlfg~~--~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARA 734 (1458)
.++||+|+|+++++||+|||.++.. .+.+...++++.+.+..++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 74 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHHHEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87436797566545785345430124455542356778999997555420374210152368789879999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHHCCHHH
Q ss_conf 71399899980877778965699999999988708967999705632010178899992986988036035664110699
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1458)
Q Consensus 735 ly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~ 814 (1458)
++++|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .+..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y 231 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLY 231 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHH
T ss_conf 852998999658865569889999988-7888717998999978799998499999998999999999999986-89699
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000505 815 VRQMKA 820 (1458)
Q Consensus 815 ~~l~~~ 820 (1458)
.++++.
T Consensus 232 ~~l~~~ 237 (242)
T d1mv5a_ 232 AKYVSE 237 (242)
T ss_dssp HHHHHC
T ss_pred HHHHHH
T ss_conf 999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=386.98 Aligned_cols=207 Identities=39% Similarity=0.696 Sum_probs=196.2
Q ss_pred CCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf 8533357-678508949999815899936899887077658998489987977898177878887588997239778978
Q 000505 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1458)
Q Consensus 610 ~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~ 688 (1458)
..|+|+| ||++++|++++|+|++|||||||+++|+|.+++.+|.+ .++|+++|++|.||++++||+|||.||..+++.
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-ECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCCEEECCCCCCCCCCCH
T ss_conf 9767737599985999999998999829999999957974788289-999999998164302676032142033345605
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999998100036886107986302689987886899999999987139989998087777896569999999998870
Q 000505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1458)
Q Consensus 689 ~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l 768 (1458)
+++++++.|.+..|+..+|+++.|.+|++|.+|||||||||+||||++++|+|++||||||+||+.+...+++.++....
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~ 206 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999776999984612332355554237799999999999999869635133385544898999999999998862
Q ss_pred CCCEEEEEECCCCHHCCCCEEEEEECCEEEECCCCHHHHHHCCHHHHHHH
Q ss_conf 89679997056320101788999929869880360356641106999999
Q 000505 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1458)
Q Consensus 769 ~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~~~l~ 818 (1458)
+++|+|+|||+++.+..||+|++|++|+|++.|+++|++. ...+|....
T Consensus 207 ~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~ 255 (281)
T d1r0wa_ 207 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKL 255 (281)
T ss_dssp TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHH
T ss_conf 8999999925289998599999998999999878999960-594899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=354.31 Aligned_cols=217 Identities=22% Similarity=0.362 Sum_probs=190.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999788741308
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~is 1286 (1458)
.|+++|++.+|.. ..+|+|+||++++||.+||+||||||||||++++.|+++|++|+|.+||.|+++.+.+ |.+++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98167777656-5777038699---9999----99999999849289998400145753447999899159999999998
Q 000505 1287 IIPQDPMLFQG-TVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~---~~sD----eeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARA 1358 (1458)
++||+|.+|.. |+++|+.... ..+. +.+.++++.+++.++ +|.. ...||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-------LNRY----PAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-------TTSC----TTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-------HCCC----HHHCCHHHHHHHHHHHH
T ss_conf 980033534222099999999987399999999999999987598556-------6099----54699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 605998799847677999998999999999864--99478997249123410-298999949879784593478621998
Q 000505 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1435 (1458)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~~s 1435 (1458)
|..+|+||+|||||+++|+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|++++.|+|+++.++|..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HHH
Q ss_conf 489
Q 000505 1436 SFS 1438 (1458)
Q Consensus 1436 ~f~ 1438 (1458)
.|-
T Consensus 231 ~~~ 233 (239)
T d1v43a3 231 VFV 233 (239)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=354.78 Aligned_cols=216 Identities=23% Similarity=0.331 Sum_probs=192.0
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79994468847998950221168961894999988999987799999821677997389996961799997887413089
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isi 1287 (1458)
|+++|++++|.. ..+|+|+||++++||.+||+||||||||||++++.|+..|++|+|.+||.|+...+. .|.++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---CC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8167777656-57770386999---99----9999999998492899984001457534479998991599999999986
Q 000505 1288 IPQDPMLFQG-TVRTNLDPLEQ---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~~---~s----DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL 1359 (1458)
|||+|.+|.. |+++|+..... .+ ++.+.++++.+++.++....| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 05998799847677999998999999999864--99478997249123410-2989999498797845934786219984
Q 000505 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1436 (1458)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~~s~ 1436 (1458)
+.+|++|+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|++++.|+|++++++|...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 89
Q 000505 1437 FS 1438 (1458)
Q Consensus 1437 f~ 1438 (1458)
|-
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-45 Score=353.26 Aligned_cols=214 Identities=23% Similarity=0.408 Sum_probs=191.5
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79994468847998950221168961894999988999987799999821677997389996961799997887413089
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isi 1287 (1458)
|+++|++.+|.. .+|+||||++++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8167777656-57770386----999999999999998492899984001457534479998991599999999986059
Q 000505 1288 IPQDPMLFQG-TVRTNLDP----LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp----~~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~ 1362 (1458)
|||+|.+|.. |+++|+.. .+.-.++++.++++.+++.++. |..+ ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-------DRNP----LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-------TSCG----GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-------HCCH----HHCCHHHHCCHHHHHHHHCC
T ss_conf 512111174665778888877640553899999999982565557-------5895----54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 98799847677999998999999999864--99478997249123410-29899994987978459347862199848
Q 000505 1363 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437 (1458)
Q Consensus 1363 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f 1437 (1458)
|+||+|||||+++|+.+...+++.|++.. .+.|+|+|+|++..+.. ||||++|.+|++++.|+|++++++|...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=356.43 Aligned_cols=221 Identities=22% Similarity=0.337 Sum_probs=193.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999---788741
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LRs 1283 (1458)
.|+++|++.+|+.+...+|+||||++++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+...+ ....|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 30898167777656-577703869---9999----999999999849289998400145753447999899159999999
Q 000505 1284 RLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1458)
Q Consensus 1284 ~isiIpQdp~LF~g-TIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~L 1355 (1458)
++++|||+|.+|.. |+++|+... ...+ ++.+.++++.+++.++....| ..||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895-----------4599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998605998799847677999998999999999864--99478997249123410-298999949879784593478621
Q 000505 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1432 (1458)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~ 1432 (1458)
||||..+|+||++||||+++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHHH
Q ss_conf 998489
Q 000505 1433 NSSSFS 1438 (1458)
Q Consensus 1433 ~~s~f~ 1438 (1458)
|...|.
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=354.41 Aligned_cols=219 Identities=26% Similarity=0.448 Sum_probs=192.0
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 799944688479989--5022116896189499998899998779999982167799738999696179999788---74
Q 000505 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1282 (1458)
|+++|++.+|..+.. .+|+|+||++++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCC---CCCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 130898167777656-57770386---99999----99999999984928999840014575344799989915999999
Q 000505 1283 SRLSIIPQDPMLFQG-TVRTNLDP---LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 s~isiIpQdp~LF~g-TIR~NLdp---~~~~s----DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~ 1354 (1458)
+++++|||+|.+|.. |+++|+.. ....+ ++.+.++++++++.+. +|... ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-------~~~~~----~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-------HDSYP----SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-------TSSCB----SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-------HHCCH----HHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-------54894----349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99986059987998476779999989999999998649--9478997249123410-29899994987978459347862
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~ 1431 (1458)
|||||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+++|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 199848
Q 000505 1432 DNSSSF 1437 (1458)
Q Consensus 1432 ~~~s~f 1437 (1458)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-45 Score=353.45 Aligned_cols=219 Identities=20% Similarity=0.320 Sum_probs=191.1
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999788----74
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----LR 1282 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~----LR 1282 (1458)
.|+++|++.+|.. ..+|+|+||++++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+....... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 130898167777656-577703869---99999----9999999984928999840014575344799989915999999
Q 000505 1283 SRLSIIPQDPMLFQG-TVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1458)
Q Consensus 1283 s~isiIpQdp~LF~g-TIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~ 1354 (1458)
+++++|||+|.+|.. |+++|+... ...+. +.+.++++.+++.++. |... ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-------~~~p----~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-------NRKP----RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-------TCCG----GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-------CCCH----HHCCHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875996676-------2993----349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998605998799847677999998999999999864--99478997249123410-29899994987978459347862
Q 000505 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431 (1458)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~ 1431 (1458)
|||||..+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 1998489
Q 000505 1432 DNSSSFS 1438 (1458)
Q Consensus 1432 ~~~s~f~ 1438 (1458)
+|...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-45 Score=347.51 Aligned_cols=221 Identities=26% Similarity=0.391 Sum_probs=191.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---------
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999---------
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--------- 1277 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~--------- 1277 (1458)
.|+++|++.+|.. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ----HHHHHCCEEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----78874130898167777656-57770386----99999----9999999998492899984001457534479998
Q 000505 1278 ----LQDLRSRLSIIPQDPMLFQG-TVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1278 ----l~~LRs~isiIpQdp~LF~g-TIR~NLdp----~~~~s----DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~n 1344 (1458)
....|+++++|||+|.+|.. |+++|+.. ....+ ++.+.++++.+++.+.... ... .+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~p----~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG------KYP----VH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT------SCG----GG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC------CCC----CC
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430------682----20
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 99159999999998605998799847677999998999999999864-99478997249123410-29899994987978
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1345 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
|||||+||++|||||..+|++|+|||||+++|+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||.+|+|+|
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCCCCHHHH
Q ss_conf 45934786219984899
Q 000505 1423 YDSPRQLLEDNSSSFSK 1439 (1458)
Q Consensus 1423 ~gsp~~Ll~~~~s~f~~ 1439 (1458)
.|+|++++++|...|.+
T Consensus 230 ~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EECHHHHHHSCCSHHHH
T ss_pred ECCHHHHHHCCCCHHHH
T ss_conf 84999998389999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7e-45 Score=345.82 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=179.0
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 799944688479989--50221168961894999988999987799999821677997389996961799997887----
Q 000505 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---- 1281 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1281 (1458)
|+++|++++|..+.+ .+|+|+||++++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHCCC---C---CCCCHH----HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4130898167777656-57770386---9---999999----99999998492899984001457534479998991599
Q 000505 1282 RSRLSIIPQDPMLFQG-TVRTNLDP---L---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1458)
Q Consensus 1282 Rs~isiIpQdp~LF~g-TIR~NLdp---~---~~~sDe----eI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQr 1350 (1458)
|+++++|||+|.+|.. |+++|+.. + ...+.+ ++.+.++.+++.+. -.+..+ .+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~p----~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER------FANHKP----NQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG------GTTCCG----GGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH------HHCCCH----HHCCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345------534880----23899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999998605998799847677999998999999999864--99478997249123410298999949879784593
Q 000505 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1426 (1458)
Q Consensus 1351 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp 1426 (1458)
||++|||||..+|+||+||||||++|+.+...|++.|++.. .++|+|+|+|+++....||||++|++|+|+|.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-43 Score=333.28 Aligned_cols=215 Identities=21% Similarity=0.386 Sum_probs=186.5
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 62799944688479989502211689618949999889999877999998216779973899969617999978874130
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~i 1285 (1458)
|.|+++|++.+|.. ..||+|+||++++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+.+ ..+++|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 97899958999999--999806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCC---CCCCHHHHHHHHH----HCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 898167777656-577703869---9999999999999----84928999840014575344799989915999999999
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPL---EQHSDQEIWEVIN----KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1458)
Q Consensus 1286 siIpQdp~LF~g-TIR~NLdp~---~~~sDeeI~~aL~----~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LAR 1357 (1458)
+++||++.+|.. |+++|+... ...+++++++.++ .+++.+ ..+..+ .+||+|||||+++||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-------KIKDRV----STYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-------GGGSBG----GGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-------HHHHHH----HHCCHHHHHHHHHHH
T ss_conf 675001546878667788898998617998999999999998679788-------885045----337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8605998799847677999998999999999864-99478997249123410-29899994987978459347862199
Q 000505 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1434 (1458)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~~ 1434 (1458)
|++.+|+||+|||||+++|+.+...|++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4e-43 Score=333.05 Aligned_cols=220 Identities=20% Similarity=0.363 Sum_probs=182.7
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 627999446884799895022116896189499998899998779999982167799738999696179999788741-3
Q 000505 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS-R 1284 (1458)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs-~ 1284 (1458)
--++++|++.+|.. ..+|+||||++++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0898167777656-577703869--9999999999999849289998400145753447999899159999999998605
Q 000505 1285 LSIIPQDPMLFQG-TVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1285 isiIpQdp~LF~g-TIR~NLdp~--~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1361 (1458)
++++||++.+|.. |+++|+... .....+++.+.++.. .+....+.+..+.. ..+||||||||+++|||+..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSLFPRLKERLKQL----GGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHHCHHHHTTTTSB----SSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHCHHHHHHCC----HHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999--98741768887585----43389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998799847677999998999999999864-99478997249123410-2989999498797845934786219
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~ 1433 (1458)
+|++|+|||||+++|+.+...|++.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|+++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.3e-43 Score=334.80 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=181.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-E
Q ss_conf 279994468847998950221168961894999988999987799999821677997389996961799997887413-0
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR-L 1285 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~-i 1285 (1458)
-++++|++.+|.. ..+|+||||++++||.+||+||+|||||||+++|.|++.|++|+|.+||.|+...+.++.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---------------C-CCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 898167777656-5777038699---------------9-999----999999998492899984001457534479998
Q 000505 1286 SIIPQDPMLFQG-TVRTNLDPLE---------------Q-HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1458)
Q Consensus 1286 siIpQdp~LF~g-TIR~NLdp~~---------------~-~sD----eeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~n 1344 (1458)
+++||+|.+|.. |+++|+.... . ..+ ++..++++..++.+ ..|..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-------LYDRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-------GTTSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-------HCCCCH----HH
T ss_conf 7257764247887423214301333034504566542135328999999999987619630-------205953----56
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 99159999999998605998799847677999998999999999864-99478997249123410-29899994987978
Q 000505 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1422 (1458)
Q Consensus 1345 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE 1422 (1458)
||||||||+++|||+..+|++|+|||||+++|+.+...|++.|++.. +++|||+|+|+++.+.. ||||+||++|++++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 4593478621
Q 000505 1423 YDSPRQLLED 1432 (1458)
Q Consensus 1423 ~gsp~~Ll~~ 1432 (1458)
.|+|+++.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.1e-42 Score=324.24 Aligned_cols=216 Identities=24% Similarity=0.419 Sum_probs=180.5
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79994468847998950221168961894999988999987799999821677997389996961799997887413089
Q 000505 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1458)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isi 1287 (1458)
+++ ++.-+|.. ..+ |+||+++ +|.+||+||||||||||+++|.|+.+|++|+|.+||.|+..++.. |+++++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8167777656-57770386-999999----99999999849289998400145753447999899159999999998605
Q 000505 1288 IPQDPMLFQG-TVRTNLDP-LEQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1458)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp-~~~~sD----eeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1361 (1458)
+||+|.+|.. ||++|+.. ....+. +.+.++++.+++.++....| ..||||||||++||||++.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9987998476779999989999999998649--9478997249123410-298999949879784593478621998489
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438 (1458)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~ 1438 (1458)
+|+||+||||||++|+.+...+++.|++..+ +.|+|+|+|++..+.. ||||++|++|+++++|+|++++++++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHHH
Q ss_conf 9999
Q 000505 1439 KLVA 1442 (1458)
Q Consensus 1439 ~l~~ 1442 (1458)
+++.
T Consensus 224 ~fl~ 227 (240)
T d2onka1 224 EFLS 227 (240)
T ss_dssp HHGG
T ss_pred HHHC
T ss_conf 9857
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-38 Score=300.12 Aligned_cols=203 Identities=25% Similarity=0.319 Sum_probs=170.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089963499707865456788533357-67850894999981589993689988707765899848998797--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1458)
.|+++|.+++|++ ...|+| ||++++|++++|+||||||||||+++|.|.++|++|+| .++|.
T Consensus 6 ~I~v~nlsk~yg~--------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCCC
T ss_conf 4999879999999--------999813067887998999999999829999999975899987879-9916413547700
Q ss_pred ---EEEECCCCCCC-CCCHHHHHHCCCC---CCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---78981778788-8758899723977---8978----99999998100036886107986302689987886899999
Q 000505 661 ---KAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1458)
Q Consensus 661 ---iayv~Q~~wi~-~~TIreNIlfg~~---~~~~----~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi 729 (1458)
++||+|++-++ +.|++||+.|+.. ++++ +.+++++.+.|.. ........||||||||+
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv 145 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRV 145 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHH
T ss_pred CCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHH
T ss_conf 0158998003353422209999999998739999999999999998759855-----------66099546999998899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCHH-CCCCEEEEEECCEEEECCCCHHH
Q ss_conf 99998713998999808777789656999999999887-0-896799970563201-01788999929869880360356
Q 000505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 730 ~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l-~~kTvIlvTH~~~~l-~~~D~I~vl~~G~i~~~G~~~el 806 (1458)
+||||+..+|++++|||||++||+.+...+.+. +..+ . .++|+|+|||++++. ..||+|++|++|+|++.|+.+|+
T Consensus 146 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el 224 (239)
T d1v43a3 146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224 (239)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 997664049982430688666898999899999-9999873198079994899999986999999989999998599999
Q ss_pred HHHCCHH
Q ss_conf 6411069
Q 000505 807 IADQNSE 813 (1458)
Q Consensus 807 ~~~~~~~ 813 (1458)
..+....
T Consensus 225 ~~~P~~~ 231 (239)
T d1v43a3 225 YLRPNSV 231 (239)
T ss_dssp HHCCSBH
T ss_pred HHCCCCH
T ss_conf 8689998
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-39 Score=303.13 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=168.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89963499707865456788533357-6785089499998158999368998870776589984899879----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g---------- 659 (1458)
|+++|.+++|+. ...|+| ||++++|++++++||||||||||+++|.|.++|++|++ .++|
T Consensus 1 Iev~nv~k~yg~--------~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~~ 71 (232)
T d2awna2 1 VQLQNVTKAWGE--------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPPAE 71 (232)
T ss_dssp EEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EESSSCCTTSCGGG
T ss_pred CEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 999999999899--------999811177886998999998999829999999965878888889-99999778886444
Q ss_pred -EEEEECCCCCCC-CCCHHHHHHCCCCCC-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -778981778788-875889972397789-------78999999981000368861079863026899878868999999
Q 000505 660 -KKAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1458)
Q Consensus 660 -~iayv~Q~~wi~-~~TIreNIlfg~~~~-------~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~ 730 (1458)
.++||+|+|-++ +.|++||+.|+.... +++..++++...|....+ ....+||||||||++
T Consensus 72 r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-----------~~~~~LSGGqkQRva 140 (232)
T d2awna2 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVA 140 (232)
T ss_dssp TCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------C
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 322234334202643337889789998759988999999999997578865664-----------896569999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCHHC-CCCEEEEEECCEEEECCCCHHHH
Q ss_conf 9998713998999808777789656999999999887--08967999705632010-17889999298698803603566
Q 000505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1458)
Q Consensus 731 LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~--l~~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~ 807 (1458)
||||+..+|++++|||||++||+.+...+++. +..+ ..++|+|+|||+++... .||+|++|++|+|++.|+.+|++
T Consensus 141 iAraL~~~P~illlDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99997039988997588878898899899999-99998742987999948999999969999999799999980899997
Q ss_pred HHCC
Q ss_conf 4110
Q 000505 808 ADQN 811 (1458)
Q Consensus 808 ~~~~ 811 (1458)
+.+.
T Consensus 220 ~~P~ 223 (232)
T d2awna2 220 HYPA 223 (232)
T ss_dssp HSCS
T ss_pred HCCC
T ss_conf 3899
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1e-38 Score=300.37 Aligned_cols=202 Identities=26% Similarity=0.318 Sum_probs=170.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089963499707865456788533357-6785089499998158999368998870776589984899879---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1458)
.|+++|.+++|+.. ....|+| ||++++|++++|+||+|||||||+++|.|..+|++|++ .++|
T Consensus 3 ~i~v~nlsk~y~~g------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-YFDDRLVASNGKL 75 (242)
T ss_dssp CEEEEEEEEEEGGG------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE-EETTEEEEETTEE
T ss_pred EEEEEEEEEEECCC------CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEECCCHH
T ss_conf 89997579998899------9899804078987998999998999809999999975868887459-9999995137311
Q ss_pred -------EEEEECCCCCCC-CCCHHHHHHCCCCC---CH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -------778981778788-87588997239778---97----8999999981000368861079863026899878868
Q 000505 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1458)
Q Consensus 660 -------~iayv~Q~~wi~-~~TIreNIlfg~~~---~~----~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGG 724 (1458)
+++||+|+|-++ +.|++|||.|+... ++ ++.+++++.+.|....+ .+...||||
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~p~~LSGG 144 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGA 144 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHH
T ss_pred HCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH-----------CCHHHCCHH
T ss_conf 153120451477304334666657777665567613799999999999986659176664-----------895459999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHH-CCCCEEEEEECCEEEECC
Q ss_conf 99999999987139989998087777896569999999998870--896799970563201-017889999298698803
Q 000505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1458)
Q Consensus 725 QkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l--~~kTvIlvTH~~~~l-~~~D~I~vl~~G~i~~~G 801 (1458)
||||++||||+..+|+++++||||++||+.+...+.+ .+..+. .+.|+|+|||+++.+ ..||+|++|++|+|++.|
T Consensus 145 qkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g 223 (242)
T d1oxxk2 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (242)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 9858998757760466145447866799899889989-999998635987999979999999969999999899999986
Q ss_pred CCHHHHHHC
Q ss_conf 603566411
Q 000505 802 KYEDLIADQ 810 (1458)
Q Consensus 802 ~~~el~~~~ 810 (1458)
+.+|+..++
T Consensus 224 ~~~el~~~P 232 (242)
T d1oxxk2 224 KPEDLYDNP 232 (242)
T ss_dssp CHHHHHHSC
T ss_pred CHHHHHHCC
T ss_conf 999998689
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-38 Score=299.46 Aligned_cols=203 Identities=24% Similarity=0.328 Sum_probs=169.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089963499707865456788533357-6785089499998158999368998870776589984899879---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1458)
.|+++|.+++|+. ...++| ||++++|++++++||+|||||||+++|.|.++|++|++ .++|
T Consensus 3 ~i~v~nl~k~yg~--------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I-~~~g~~i~~~~~~ 73 (240)
T d1g2912 3 GVRLVDVWKVFGE--------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGT
T ss_pred CEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEECCCCHH
T ss_conf 1899869999899--------999856066886998999999999809999999964878898989-9999980356644
Q ss_pred --------EEEEECCCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf --------778981778788-8758899723977---897----899999998100036886107986302689987886
Q 000505 660 --------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1458)
Q Consensus 660 --------~iayv~Q~~wi~-~~TIreNIlfg~~---~~~----~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSG 723 (1458)
.++||+|+|-++ +.||+||+.|+.. .+. ++.+++++.+.|.... ......|||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-----------~~~p~~LSG 142 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-----------NRKPRELSG 142 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-----------TCCGGGSCH
T ss_pred HHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCH
T ss_conf 424532255120022122231011667633068772999899999999999875996676-----------299334999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCCCHHC-CCCEEEEEECCEEEEC
Q ss_conf 899999999987139989998087777896569999999998870-8-967999705632010-1788999929869880
Q 000505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1458)
Q Consensus 724 GQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l-~-~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~ 800 (1458)
|||||+++|||+..+|++++|||||++||+.+...+.+ .+..+. + +.|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 99999999999826998898258876569899989999-99999863698899995999999996999999989999998
Q ss_pred CCCHHHHHHCCHH
Q ss_conf 3603566411069
Q 000505 801 GKYEDLIADQNSE 813 (1458)
Q Consensus 801 G~~~el~~~~~~~ 813 (1458)
|+.+|++.++...
T Consensus 222 G~~~el~~~P~~~ 234 (240)
T d1g2912 222 GSPDEVYDKPANT 234 (240)
T ss_dssp ECHHHHHHSCSBH
T ss_pred CCHHHHHHCCCCH
T ss_conf 5999998289998
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.9e-38 Score=296.96 Aligned_cols=197 Identities=29% Similarity=0.419 Sum_probs=169.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89963499707865456788533357-6785089499998158999368998870776589984899879----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g---------- 659 (1458)
|+++|.+++|+. ..|+| ||++++|++++++||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 i~v~nlsk~y~~---------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I-~~~G~~i~~~~~~~ 71 (229)
T d3d31a2 2 IEIESLSRKWKN---------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEK 71 (229)
T ss_dssp EEEEEEEEECSS---------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHH
T ss_pred EEEEEEEEEECC---------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 899989999499---------78843378987998999998999829999999964768887889-99567346521657
Q ss_pred -EEEEECCCCCCC-CCCHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -778981778788-8758899723977----8978999999981000368861079863026899878868999999999
Q 000505 660 -KKAYVPQSSWIQ-TGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1458)
Q Consensus 660 -~iayv~Q~~wi~-~~TIreNIlfg~~----~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LAR 733 (1458)
.++|++|++-++ +.|++||+.|+.. -++++..++++...+... .......||||||||++|||
T Consensus 72 r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGG~~QRvaiAr 140 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALAR 140 (229)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHH
T ss_pred HCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHH-----------HHCCHHHCCHHHHCCHHHHH
T ss_conf 4056151211117466577888887764055389999999998256555-----------75895547999840140304
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCHHC-CCCEEEEEECCEEEECCCCHHHHHH
Q ss_conf 8713998999808777789656999999999887-0-8967999705632010-1788999929869880360356641
Q 000505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1458)
Q Consensus 734 Aly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l-~~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~~~ 809 (1458)
|+..+|+++|||||||+||+.+...+++ .+..+ . .+.|+|++||+++... .||+|++|++|+|++.|+.+|+.++
T Consensus 141 aL~~~P~iLllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 141 ALVTNPKILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 3443677144347876799899999999-99999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-38 Score=296.56 Aligned_cols=201 Identities=24% Similarity=0.336 Sum_probs=168.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89963499707865456788533357-6785089499998158999368998870776589984899879----------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1458)
Q Consensus 591 i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g---------- 659 (1458)
|+++|.+++|+.+. .....|+| ||++++|++++|+||+|||||||+++|.|..+|++|++ .++|
T Consensus 2 i~v~nlsk~y~~~~----~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 2 IKLSNITKVFHQGT----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLSESE 76 (240)
T ss_dssp EEEEEEEEEEECSS----CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE-EETTEEECTTCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCE-EECCEEEEECCHHH
T ss_conf 79982799969998----14898615057886997999989998988899998758863667732-88676852087555
Q ss_pred ------EEEEECCCCCCC-CCCHHHHHHCCC-----CCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf ------778981778788-875889972397-----789--789999999810003688610798630268998788689
Q 000505 660 ------KKAYVPQSSWIQ-TGTIRENILFGK-----DMR--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1458)
Q Consensus 660 ------~iayv~Q~~wi~-~~TIreNIlfg~-----~~~--~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQ 725 (1458)
+++||+|++-++ ..|++|||.|+. +-+ +++..++++.+.|.+. .......|||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-----------~~~~~~~LSGG~ 145 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQ 145 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-----------TSSCBSCCCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-----------HHCCHHHCCHHH
T ss_conf 115541664302252227996499999999998499989999999999997699035-----------548943499999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HC-CCEEEEEECCCCHHC-CCCEEEEEECCEEEECCC
Q ss_conf 999999998713998999808777789656999999999887-08-967999705632010-178899992986988036
Q 000505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 726 kqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~-~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~G~ 802 (1458)
|||++||||+..+|+++++||||++||+.++..+++. +..+ .+ ++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 146 ~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~ 224 (240)
T d3dhwc1 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 9899986401058986874465565898885679999-999986469789998389999998699999997999999879
Q ss_pred CHHHHH
Q ss_conf 035664
Q 000505 803 YEDLIA 808 (1458)
Q Consensus 803 ~~el~~ 808 (1458)
.+|+++
T Consensus 225 ~~ei~~ 230 (240)
T d3dhwc1 225 VSEVFS 230 (240)
T ss_dssp TTTTTC
T ss_pred HHHHHH
T ss_conf 999972
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-38 Score=298.90 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=179.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999788741308
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~is 1286 (1458)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+.....+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 9816777-7656577703869--9999999999999849289998400145753447999899159999999998605--
Q 000505 1287 IIPQDPM-LFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK-- 1361 (1458)
Q Consensus 1287 iIpQdp~-LF~gTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr-- 1361 (1458)
+++|+.. .|..++.+|+... .....+.+.++++.+++.+. +.....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767-----------67684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----99879984767799999899999999986-499478997249123410-2989999498797845934786219
Q 000505 1362 -----KKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1362 -----~~~ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrVlvL~~G~ivE~gsp~~Ll~~~ 1433 (1458)
+|+|++|||||+++|+.+...+.+.|++. -+++|||+++|+++.+.. ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-37 Score=291.29 Aligned_cols=210 Identities=26% Similarity=0.362 Sum_probs=171.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089963499707865456788533357-6785089499998158999368998870776589984899879---------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1458)
.++++|.+++|+. ...|+| ||++++||+++|+|++|||||||+++|.|..++++|+| .++|
T Consensus 2 ~Lev~nl~k~yg~--------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I-~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDK 72 (258)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECT
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EECCEEECCCCCC
T ss_conf 6999978999899--------998815066886997999998999829999999974766789977-9999993367752
Q ss_pred -----------------EEEEECCCCCCC-CCCHHHHHHCCC----CCCH----HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----------------778981778788-875889972397----7897----89999999810003688610798630
Q 000505 660 -----------------KKAYVPQSSWIQ-TGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSV 713 (1458)
Q Consensus 660 -----------------~iayv~Q~~wi~-~~TIreNIlfg~----~~~~----~~y~~vi~~c~L~~di~~lp~Gd~t~ 713 (1458)
+++||+|+|-++ +.|+.||+.++. ..+. ++..++++.+.|.+....
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------- 144 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-------- 144 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--------
T ss_pred CHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC--------
T ss_conf 000023517679997454489983323141101021365657876299989999999999998299524430--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHC-CCCEEEE
Q ss_conf 268998788689999999998713998999808777789656999999999887-08967999705632010-1788999
Q 000505 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLV 791 (1458)
Q Consensus 714 ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~~kTvIlvTH~~~~l~-~~D~I~v 791 (1458)
.....||||||||++||||+..+|+++++||||++||+.+...+++. +..+ .+++|+|+|||+++.+. .||+|++
T Consensus 145 --~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~v 221 (258)
T d1b0ua_ 145 --KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIF 221 (258)
T ss_dssp --SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred --CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEE
T ss_conf --68220567788898999998439987885245556887888899876-554103688338994899999986999999
Q ss_pred EECCEEEECCCCHHHHHHCCHHH-HHHHH
Q ss_conf 92986988036035664110699-99999
Q 000505 792 MKDGKIEQSGKYEDLIADQNSEL-VRQMK 819 (1458)
Q Consensus 792 l~~G~i~~~G~~~el~~~~~~~~-~~l~~ 819 (1458)
|++|+|++.|+.+|++.+....+ .+++.
T Consensus 222 m~~G~iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 222 LHQGKIEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred EECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 97999999849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.3e-38 Score=294.44 Aligned_cols=197 Identities=27% Similarity=0.371 Sum_probs=159.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE---------
Q ss_conf 89963499707865456788533357-67850894999981589993689988707765899848998797---------
Q 000505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1458)
Q Consensus 591 i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~--------- 660 (1458)
|+++|.+++|+..+ .....|+| ||++++|++++|+||+|||||||+++|.|..+|++|+| .++|.
T Consensus 2 I~i~nlsk~y~~~~----~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDE 76 (230)
T ss_dssp EEEEEEEEEEEETT----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 89990799948998----20898713377884997999988999982165575068877776626-99999857688555
Q ss_pred --------EEEECCCCCC-CCCCHHHHHHCCCC------CC-HHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf --------7898177878-88758899723977------89-789999999---81000368861079863026899878
Q 000505 661 --------KAYVPQSSWI-QTGTIRENILFGKD------MR-QSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINL 721 (1458)
Q Consensus 661 --------iayv~Q~~wi-~~~TIreNIlfg~~------~~-~~~y~~vi~---~c~L~~di~~lp~Gd~t~ige~G~~L 721 (1458)
++||+|+|-+ ++.||+||+.++.. ++ +++.+++.+ ...|.+. .....-.+|
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~L 146 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQL 146 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGS
T ss_pred CCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH----------HHCCCHHHC
T ss_conf 1231255577880412417686688877578887224789999999999998876242345----------534880238
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCHHCCCCEEEEEECCEEEE
Q ss_conf 8689999999998713998999808777789656999999999887-0-8967999705632010178899992986988
Q 000505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1458)
Q Consensus 722 SGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l-~~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~ 799 (1458)
||||||||+||||+..+|+++++|||||+||+.++..+++. +..+ . .++|+|+|||+++....||+|++|++|+|++
T Consensus 147 SGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (230)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEE
T ss_conf 99999999987565227888994687654698999999999-99999843999999878889998699899998999999
Q ss_pred CCCC
Q ss_conf 0360
Q 000505 800 SGKY 803 (1458)
Q Consensus 800 ~G~~ 803 (1458)
.|+.
T Consensus 226 ~g~~ 229 (230)
T d1l2ta_ 226 EEKL 229 (230)
T ss_dssp EEEC
T ss_pred ECCC
T ss_conf 5257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-36 Score=283.67 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=163.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089963499707865456788533357-67850894999981589993689988707765899848998797--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1458)
-++++|.+.+|+. ...|+| ||++++|++++++||||||||||+++|.|.+++.+|++ .++|.
T Consensus 4 iL~v~nlsk~yg~--------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEETT--------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHH
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCHHHH
T ss_conf 6999778999799--------688712179988997999999999849999999977976887379-9999966405699
Q ss_pred ------EEEECCCCCC-CCCCHHHHHHCCCCC-----------------CHHHHHHH---HHHHHHHHHHHHHCCCCCCC
Q ss_conf ------7898177878-887588997239778-----------------97899999---99810003688610798630
Q 000505 661 ------KAYVPQSSWI-QTGTIRENILFGKDM-----------------RQSFYEEV---LEGCALNQDIEMWADGDLSV 713 (1458)
Q Consensus 661 ------iayv~Q~~wi-~~~TIreNIlfg~~~-----------------~~~~y~~v---i~~c~L~~di~~lp~Gd~t~ 713 (1458)
++|++|+|-+ ++.|++||+.+|... +++..+++ ++...+ ...
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~ 143 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----------SHL 143 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----------GGG
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-----------CHH
T ss_conf 999833872577642478874232143013330345045665421353289999999999876196-----------302
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHH-CCCCEEEE
Q ss_conf 268998788689999999998713998999808777789656999999999887-0896799970563201-01788999
Q 000505 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLV 791 (1458)
Q Consensus 714 ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~~kTvIlvTH~~~~l-~~~D~I~v 791 (1458)
......+||||||||+++|||+..+|++++||||+++||+.....+++. +..+ .+|+|+|++||+++.+ ..||+|++
T Consensus 144 ~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~v 222 (254)
T d1g6ha_ 144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYV 222 (254)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEE
T ss_conf 0595356991888899999999759272324397656999999999999-999997899899994769999986999999
Q ss_pred EECCEEEECCCCHHHHH
Q ss_conf 92986988036035664
Q 000505 792 MKDGKIEQSGKYEDLIA 808 (1458)
Q Consensus 792 l~~G~i~~~G~~~el~~ 808 (1458)
|++|+|+..|+.+|+.+
T Consensus 223 m~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 223 MFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp EETTEEEEEEESHHHHH
T ss_pred EECCEEEEEECHHHHHH
T ss_conf 96998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.9e-36 Score=283.36 Aligned_cols=205 Identities=23% Similarity=0.355 Sum_probs=167.0
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE-----
Q ss_conf 984089963499707865456788533357-67850894999981589993689988707765899848998797-----
Q 000505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1458)
Q Consensus 587 ~~~~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~----- 660 (1458)
++..++++|.+++|.. ...|+| ||++++|++++++||||||||||+++|.|.++|.+|++ .++|.
T Consensus 3 sd~~Lev~~l~k~yg~--------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I-~~~G~~i~~~ 73 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA--------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNK 73 (240)
T ss_dssp CSEEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTC
T ss_pred CCEEEEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCCCCCCC
T ss_conf 5607999618999899--------888830257888997999999999859999999967888880389-8424434466
Q ss_pred ---------EEEECCCCCCC-CCCHHHHHHCCCCC--CHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---------78981778788-87588997239778--978999999-981000368861079863026899878868999
Q 000505 661 ---------KAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVL-EGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1458)
Q Consensus 661 ---------iayv~Q~~wi~-~~TIreNIlfg~~~--~~~~y~~vi-~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkq 727 (1458)
++|+||++-++ +.|++||+.++... +.+..++.+ +...+...++ + .......+|||||||
T Consensus 74 ~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~----~~~~~~~~LSGG~~Q 146 (240)
T d1ji0a_ 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK---E----RLKQLGGTLSGGEQQ 146 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH---T----TTTSBSSSSCHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH---H----HHHCCHHHCCHHHHH
T ss_conf 088888742355676554577636999999888732788899999999998741768---8----875854338999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHH-CCCCEEEEEECCEEEECCCCHH
Q ss_conf 9999998713998999808777789656999999999887-0896799970563201-0178899992986988036035
Q 000505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1458)
Q Consensus 728 Ri~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~~kTvIlvTH~~~~l-~~~D~I~vl~~G~i~~~G~~~e 805 (1458)
|+++|||+..+|++++|||||++||+.....+++ .+..+ .+++|+|++||+++.+ ..||+|++|++|+|++.|+.+|
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999982998740039886799999999999-999999689989999588999999699999998999999848999
Q ss_pred HHH
Q ss_conf 664
Q 000505 806 LIA 808 (1458)
Q Consensus 806 l~~ 808 (1458)
+.+
T Consensus 226 l~~ 228 (240)
T d1ji0a_ 226 LLD 228 (240)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 842
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.2e-36 Score=280.17 Aligned_cols=198 Identities=24% Similarity=0.306 Sum_probs=165.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089963499707865456788533357-67850894999981589993689988707765899848998797--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1458)
+|+++|.+.+|.. ...|+| ||++++|++++++||+|||||||+++|.|.++|.+|++ .++|.
T Consensus 2 aI~v~nl~k~yg~--------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i-~i~G~~i~~~~~~ 72 (238)
T d1vpla_ 2 AVVVKDLRKRIGK--------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPHE 72 (238)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTCHHH
T ss_pred CEEEEEEEEEECC--------EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCHHH
T ss_conf 7899958999999--------999806256884897999999999999999999966988788879-9986724468398
Q ss_pred ----EEEECCCCCC-CCCCHHHHHHCCCC---CCHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----7898177878-88758899723977---897899----99999810003688610798630268998788689999
Q 000505 661 ----KAYVPQSSWI-QTGTIRENILFGKD---MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1458)
Q Consensus 661 ----iayv~Q~~wi-~~~TIreNIlfg~~---~~~~~y----~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqR 728 (1458)
++|+||++.+ ++.|++||+.|... .+.++. +++++.+.|. ....++-.+||||||||
T Consensus 73 ~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~qr 141 (238)
T d1vpla_ 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRK 141 (238)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHCCHHHHHH
T ss_conf 8721867500154687866778889899861799899999999999867978-----------88850453379989899
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHC-CCCEEEEEECCEEEECCCCHHH
Q ss_conf 999998713998999808777789656999999999887-08967999705632010-1788999929869880360356
Q 000505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1458)
Q Consensus 729 i~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el 806 (1458)
+++|||+.++|++++||||+++||+.....+++ .+..+ ..++|+|++||+++.+. .||+|++|++|+|+..|+++++
T Consensus 142 v~iA~al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el 220 (238)
T d1vpla_ 142 LLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220 (238)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999999865999887337988979899999999-9999996599899995989999996999999989999999289999
Q ss_pred HH
Q ss_conf 64
Q 000505 807 IA 808 (1458)
Q Consensus 807 ~~ 808 (1458)
.+
T Consensus 221 ~~ 222 (238)
T d1vpla_ 221 KE 222 (238)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6e-36 Score=279.75 Aligned_cols=190 Identities=24% Similarity=0.399 Sum_probs=160.3
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 27999446884799895022116896189499998899998779999982167799738999696179999788741308
Q 000505 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1458)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~is 1286 (1458)
.|+++|++++|.. +||+|+||++++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98167777656-57770386----9-999999999999984928999840014575344799989915999999999860
Q 000505 1287 IIPQDPMLFQG-TVRTNLDP----L-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1458)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp----~-~~~sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALL 1360 (1458)
++||++.++.. |+++|+.. + ...+++++.++++..++.+ ++..+ .+||+|||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC
Q ss_conf 599879984767799999899999999986499478997249123410298999949
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1458)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlvL~~ 1417 (1458)
.+|++++|||||+++|+++...+.+.|.+..++.++++|+|+ +.+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991-62544161234010
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.6e-36 Score=281.35 Aligned_cols=188 Identities=28% Similarity=0.432 Sum_probs=152.7
Q ss_pred C-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-----------EEEEECCCCCCC-CCCHHHHHHCC
Q ss_conf 7-6785089499998158999368998870776589984899879-----------778981778788-87588997239
Q 000505 616 D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQ-TGTIRENILFG 682 (1458)
Q Consensus 616 ~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g-----------~iayv~Q~~wi~-~~TIreNIlfg 682 (1458)
| +|+++ +++++++||+|||||||+++|.|.++|++|++ .++| .++||+|++-++ +.||+|||.||
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHH
T ss_conf 9999749-97999997999809999999973999896289-999999886998992852252314435220155766653
Q ss_pred CC-CCH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 77-897----8999999981000368861079863026899878868999999999871399899980877778965699
Q 000505 683 KD-MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1458)
Q Consensus 683 ~~-~~~----~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~ 757 (1458)
.. ++. ++.+++++.+.|.+ ........||||||||+++|||+..+|++++||||||+||+.+..
T Consensus 95 l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 95 LRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 233677889999999998638375-----------665794448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHH--CCCEEEEEECCCCHHC-CCCEEEEEECCEEEECCCCHHHHHHCCHHHHHH
Q ss_conf 99999998870--8967999705632010-178899992986988036035664110699999
Q 000505 758 HLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1458)
Q Consensus 758 ~if~~~i~~~l--~~kTvIlvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~~~~~~~~~~l 817 (1458)
.+++. +..+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.+..+....++
T Consensus 164 ~i~~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~f 225 (240)
T d2onka1 164 VLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEF 225 (240)
T ss_dssp HHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHH
T ss_pred HHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHH
T ss_conf 99999-999987439769998189999999699999998999999906999832998899998
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-32 Score=250.79 Aligned_cols=193 Identities=23% Similarity=0.397 Sum_probs=159.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089963499707865456788533357-67850894999981589993689988707765899848998797--------
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1458)
.++++|++. ...|++ ||+|++||+++|+|+||||||||+++|.|.. +.+|++ .++|.
T Consensus 3 il~~~dv~~------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I-~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 3 VMQLQDVAE------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI-QFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEECC------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEE-EESSSBGGGSCHH
T ss_pred EEEEECCCC------------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEE-EECCEECCCCCHH
T ss_conf 999987415------------71555888899489899999899980999999994887-995599-9999999869989
Q ss_pred -----EEEECCCCCC-CCCCHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----7898177878-887588997239778--97899999998100036886107986302689987886899999999
Q 000505 661 -----KAYVPQSSWI-QTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1458)
Q Consensus 661 -----iayv~Q~~wi-~~~TIreNIlfg~~~--~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LA 732 (1458)
.+|++|+.-. +..++.+++.++... ..++.+++++.+.+.+ .++.+..+||||||||+++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHH
T ss_pred HHHHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHH
T ss_conf 9986402451213577442098876410014668999999998659876-----------76768445699889999999
Q ss_pred HHHCC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHH-CCCCEEEEEECCEEEECCCC
Q ss_conf 98713-------998999808777789656999999999887-0896799970563201-01788999929869880360
Q 000505 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1458)
Q Consensus 733 RAly~-------~~~i~lLDdp~salD~~~~~~if~~~i~~~-l~~kTvIlvTH~~~~l-~~~D~I~vl~~G~i~~~G~~ 803 (1458)
||+++ +|++++||||+++||+.....+. +.+..+ .+++|+|++||+++.+ ..||+|++|++|++++.|+.
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 99985171338998899971877778989999999-99999986799999996779999997999999979989998899
Q ss_pred HHHHH
Q ss_conf 35664
Q 000505 804 EDLIA 808 (1458)
Q Consensus 804 ~el~~ 808 (1458)
+|++.
T Consensus 217 ~ev~~ 221 (231)
T d1l7vc_ 217 EEVLT 221 (231)
T ss_dssp HHHSC
T ss_pred HHHHC
T ss_conf 99818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=4.5e-30 Score=236.09 Aligned_cols=180 Identities=23% Similarity=0.397 Sum_probs=141.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------E
Q ss_conf 089963499707865456788533357-6785089499998158999368998870776589984899879--------7
Q 000505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1458)
Q Consensus 590 ~i~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------~ 660 (1458)
.++++|.+++|+ .+.|+| ||++++|++++|+||||||||||+++|.|.++|.+|++ .++| .
T Consensus 2 ~lev~~ls~~y~---------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 71 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKGK 71 (200)
T ss_dssp EEEEEEEEEESS---------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGGGGG
T ss_pred EEEEEEEEEEEC---------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEHHHHCCC
T ss_conf 599998999939---------928842088985998999999999719999999966205677889-9998962673670
Q ss_pred EEEECCCCCCC-CCCHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 78981778788-8758899723-----97789789999999810003688610798630268998788689999999998
Q 000505 661 KAYVPQSSWIQ-TGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1458)
Q Consensus 661 iayv~Q~~wi~-~~TIreNIlf-----g~~~~~~~y~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARA 734 (1458)
++|+||++.++ +-|++||+.+ |.+.++++..+.++...+.. +.++-.+||||||||+++|||
T Consensus 72 i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 72 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHH
T ss_conf 89995013578882899999999975488637999999998748856------------301268689718888999998
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCCHHCCCCEEEEEEC
Q ss_conf 713998999808777789656999999999887089-679997056320101788999929
Q 000505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAADLVLVMKD 794 (1458)
Q Consensus 735 ly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~-kTvIlvTH~~~~l~~~D~I~vl~~ 794 (1458)
++++|++++||||+++||+.+...+++. +....++ .++|+.+| +.+..||.+.+|..
T Consensus 140 l~~~~~llllDEPt~gLD~~~~~~i~~~-l~~~~~~~~~~ii~~~--~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSR--EELSYCDVNENLHK 197 (200)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHH-HHHHHHHHSEEEEEES--SCCTTSSEEEEGGG
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEE--CHHHHCCHHHHEEE
T ss_conf 8649989998686201699999999999-9999867999999991--62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=4.5e-22 Score=176.62 Aligned_cols=303 Identities=11% Similarity=0.087 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999999999999999864999974068999999999999999999999999999999999
Q 000505 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1458)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1458)
..+.+|+.+.+..++.++..++....|++++.++|..-...+ ... .+.++..+++..++..++.....+...+.+.+
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSV-LLWMPLVVIGLMILRGITSYISSYCISWVSGK 86 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999998744687--789-99999999999997645335466544343100
Q ss_pred HHHHHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999860112479---997899999986399999999999-99999999999989999888456899999999
Q 000505 349 VRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1458)
Q Consensus 349 ir~~L~~~Iy~K~L~ls~~~---~~~G~ivnlms~D~~~i~~~~~~~-~~~w~~plqi~i~l~~L~~~lG~~~~l~gl~~ 424 (1458)
+...+...+|+|.++.+... .++|++++.++.|++.+.++.... .......+.++.++++++. +.|..++..++.
T Consensus 87 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~li~l~~ 165 (319)
T d3b60a2 87 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY-YSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHH
T ss_conf 0110004777765010111102333221111121212100001111120011233445668888876-520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999999999999999981169999854189999999999999999999999998999999
Q 000505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1458)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~ 504 (1458)
+++.........++..+..++.++..++..+...|.++|++.+|.+++|+.+.++.++..++..+...+.....+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999899--9999999999833887889999999999999999999999999999999999999998614489
Q 000505 505 FWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1458)
Q Consensus 505 ~~~~p~~--v~~~tf~~~~~~~~~L~~~~vft~la~f~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1458)
....+.+ +.+..++.+....+.+++|.+++++.+...+..|+..+++.++.+.++.+|.+|+.++|+.|++
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=3.8e-21 Score=169.77 Aligned_cols=311 Identities=13% Similarity=0.091 Sum_probs=247.7
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899---99998513479999999999999997324667886301123-3551---02678999988789999999999
Q 000505 877 WTVYS---AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAV 949 (1458)
Q Consensus 877 ~~~y~---~y~~~~~~~~l~~~~~l~~~~~~~~~~~s~~wl~~~~~~~~-~~~~---~~~i~~y~~l~~~~~~~~~~r~~ 949 (1458)
|++++ .|++..++ .+.+.+++.++..++....+++++...|+.. ..+. ..+...++++.+...++.+.+.+
T Consensus 1 Wk~~krl~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp CHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9689999999999999--99999999999999999999999999998744687789999999999999976453354665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999887705762222345703489998312658762169999999999999999999999997689
Q 000505 950 LLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQV 1029 (1458)
Q Consensus 950 ~~~~~~~~~s~~l~~~l~~~il~ap~~ffd~tp~GrilnR~s~D~~~id~~i~~~l~~~~~~~~~~~~~i~v~~~~~~~~ 1029 (1458)
.....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+...+..++...+.+++.++.+...+|.+
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 44343100011000477776501011110233322111112121210000111112001123344566888887652002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998462111798999966115999861516899999999999987779999867
Q 000505 1030 FPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT 1109 (1458)
Q Consensus 1030 ~~v~i~~~~l~~~~~~~y~~~~r~l~r~~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1109 (1458)
.++++...++...+..++.+..++..+......+...+++.|.+.|..+||+|+.|+++.+++.+..++..+........
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10256689999998876666877878988764456778877762487235311101024566666531356778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 67999999999999999999999-86127876888999999999999999999999999999965279999997359998
Q 000505 1110 MEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSE 1188 (1458)
Q Consensus 1110 ~~wl~~rl~~l~~~~~~~~~~~~-v~~~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E 1188 (1458)
..+......++..+....+..+. .....|.+++|.......|...+..+...+...+.++.+.+.|.+|+.++.+.|+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77406401000000237999999999980997899999999999999999999999999999999999999999669989
Q ss_pred C
Q ss_conf 8
Q 000505 1189 A 1189 (1458)
Q Consensus 1189 ~ 1189 (1458)
+
T Consensus 319 ~ 319 (319)
T d3b60a2 319 K 319 (319)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=1.5e-21 Score=172.68 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999899999999999999999999999999986499997406---8-99999999999999999999999999999
Q 000505 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY---H-YGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1458)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~---~-~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1458)
..+.||+.+....++.++..++....|++++.++|.+..++..... . ..+.++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999986011247---999789999998639999999999-99999999999998999988845689999
Q 000505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1458)
Q Consensus 345 ~g~rir~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~plqi~i~l~~L~~~lG~~~~l~ 420 (1458)
.+.+++..+...+|+|.++++.. .+++|+++|.++.|++.+.++... +...+...+.+++++++++. +.|..++.
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li 166 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF-LDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000-01468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899999999999999999999999999998116999985418999999999999999999999999899
Q 000505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1458)
Q Consensus 421 gl~~~~~~~~~~~~l~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1458)
.++++++.........++..+..++..+..++..+.+.|.++|++.||.+++|+.+.+++.+..++..+...+.....+.
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999899--999999999983388788999999999999999999999999999999999999999861448
Q 000505 501 IAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1458)
Q Consensus 501 ~~~~~~~~p~~--v~~~tf~~~~~~~~~L~~~~vft~la~f~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1458)
..........+ +.+..++.+....+.++.|.+++++.++..+..|+..+++.+..+.++++|++||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=7.5e-21 Score=167.57 Aligned_cols=309 Identities=12% Similarity=0.093 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCC---CHH-H----HHHHHHHHHHHHHHHH
Q ss_conf 88999999851347999999999999999732466788630112---33551---026-7----8999988789999999
Q 000505 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKVSR---EQL-I----GVFIFLSGGSSFFILG 946 (1458)
Q Consensus 878 ~~y~~y~~~~~~~~l~~~~~l~~~~~~~~~~~s~~wl~~~~~~~---~~~~~---~~~-i----~~y~~l~~~~~~~~~~ 946 (1458)
+.++.|++..++ .+...+++.++..++....++.++...|.- ..... ... + ..+.++.+...++.+.
T Consensus 3 Krl~~~~k~~k~--~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKY--RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999887705762222345703489998312658762169999999999999999999999997
Q 000505 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026 (1458)
Q Consensus 947 r~~~~~~~~~~~s~~l~~~l~~~il~ap~~ffd~tp~GrilnR~s~D~~~id~~i~~~l~~~~~~~~~~~~~i~v~~~~~ 1026 (1458)
+.+.....+.+...+++.++++++++.|++|||+.++|++++|+++|+..++..+...+...+...+.+++.++++...+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999999999999999999998462111798999966115999861516899999999999987779999
Q 000505 1027 WQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106 (1458)
Q Consensus 1027 ~~~~~v~i~~~~l~~~~~~~y~~~~r~l~r~~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1106 (1458)
|.+.++.++..++......++.+..++..+......+...+++.|+++|..+||+|+.|+++.+++.+..++..+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8676799999999999999999999-986127876888999999999999999999999999999965279999997359
Q 000505 1107 CGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI 1185 (1458)
Q Consensus 1107 ~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1185 (1458)
.....+......++..+.......+ ......|.+++|......++...+...+..+...+.++...+.|.+|+.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 998
Q 000505 1186 PSE 1188 (1458)
Q Consensus 1186 ~~E 1188 (1458)
++|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=2.3e-16 Score=134.26 Aligned_cols=172 Identities=9% Similarity=0.053 Sum_probs=117.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 49999889999877999998216779973899969617999978874130898167777656577703869999999999
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDeeI~ 1315 (1458)
-||+|+||+|||||||++.+.+.+++..|.+.+++.+....+...........++.+.++..+...+.......
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG------ 74 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 98999989993899999999814888864699877132888876531123366777887541134554430230------
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 999984928999840014575344799989915999999999860599879984767799--999899999999986499
Q 000505 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI--DTATDNVIQQTIREETSR 1393 (1458)
Q Consensus 1316 ~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTssl--D~~Td~~Iq~~I~~~~~~ 1393 (1458)
.+... ..+++|++++.++++++.++|+++++||++... +.+....+.+.+++ .+
T Consensus 75 ------------------~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~ 130 (178)
T d1ye8a1 75 ------------------VNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PN 130 (178)
T ss_dssp ------------------ECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TT
T ss_pred ------------------CCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf ------------------37625----6653201378999999740997423027773100457999999987505--79
Q ss_pred CEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 4789972491234102989999498797845934786219984899999
Q 000505 1394 CTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1442 (1458)
Q Consensus 1394 ~TVI~IAHRl~ti~~~DrVlvL~~G~ivE~gsp~~Ll~~~~s~f~~l~~ 1442 (1458)
+|+|.++|+......||++..+++|++++-++. |.+..+..++.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 789999744778986365998719999998996-----47889999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=2.7e-11 Score=96.64 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 8991599999999986----05998799847677999998999999999864-994789972491234102989999
Q 000505 1344 NWSVGQRQLVCLARVL----LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL 1415 (1458)
Q Consensus 1344 nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrVlvL 1415 (1458)
.+|||||.+++||-.+ ..++++++||||++++|+.+...+-+.|++.. .++-+|+|||++.....+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=2e-13 Score=112.35 Aligned_cols=147 Identities=11% Similarity=0.058 Sum_probs=97.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEE--EEECC-----------CCCCCCCCHHHHHHCCCCCCHHHH
Q ss_conf 49999815899936899887077658998489987977--89817-----------787888758899723977897899
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQ-----------SSWIQTGTIRENILFGKDMRQSFY 690 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~i--ayv~Q-----------~~wi~~~TIreNIlfg~~~~~~~y 690 (1458)
.+++|+||+|||||||++.|+|++++..|.+ ...+.. .+..| .+.....+..++..+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGF-WTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS------- 72 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEE-EEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469-98771328888765311233667778875411345544302-------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-
Q ss_conf 9999981000368861079863026899878868999999999871399899980877778965699999999988708-
Q 000505 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS- 769 (1458)
Q Consensus 691 ~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~- 769 (1458)
..+......+++|+++|.+++++..++|+++++|||....+. . ... ...+...++
T Consensus 73 ---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~-~~~l~~~l~~ 128 (178)
T d1ye8a1 73 ---------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKF-RDLVRQIMHD 128 (178)
T ss_dssp ---------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHH-HHHHHHHHTC
T ss_pred ---------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHH-HHHHHHHHCC
T ss_conf ---------------------303762566532013789999997409974230277731004-5-799-9999987505
Q ss_pred -CCEEEEEECCCCHHCCCCEEEEEECCEEEECCC
Q ss_conf -967999705632010178899992986988036
Q 000505 770 -QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1458)
Q Consensus 770 -~kTvIlvTH~~~~l~~~D~I~vl~~G~i~~~G~ 802 (1458)
++|+|+++|+.+..+.+|++..+++|++...++
T Consensus 129 ~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 129 PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 7978999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=2.2e-09 Score=82.45 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEE--EEC
Q ss_conf 8991599999999986----0599879984767799999899999999986499478997249123410298999--949
Q 000505 1344 NWSVGQRQLVCLARVL----LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLV--LDE 1417 (1458)
Q Consensus 1344 nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrVlv--L~~ 1417 (1458)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000505 1418 G 1418 (1458)
Q Consensus 1418 G 1418 (1458)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=1.4e-07 Score=68.88 Aligned_cols=77 Identities=27% Similarity=0.319 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEEE--E
Q ss_conf 87886899999999987----13998999808777789656999999999887089679997056320101788999--9
Q 000505 719 INLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV--M 792 (1458)
Q Consensus 719 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l~~~D~I~v--l 792 (1458)
..+|+|||+...++..+ ...+.++++|||-++|++...+.+.+ .+....++.-+|++||.++++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECCE
Q ss_conf 2986
Q 000505 793 KDGK 796 (1458)
Q Consensus 793 ~~G~ 796 (1458)
++|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=9.5e-07 Score=62.80 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHCCCCEEEEE
Q ss_conf 8788689999999998----7139989998087777896569999999998870-896799970563201017889999
Q 000505 719 INLSGGQKQRIQLARA----VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1458)
Q Consensus 719 ~~LSGGQkqRi~LARA----ly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l-~~kTvIlvTH~~~~l~~~D~I~vl 792 (1458)
..||||||.+++||-. -+.++++++||||.++||+.....+.+ .+.... .+.-+|++||+++++..||+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 33223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.29 E-value=0.00055 Score=42.31 Aligned_cols=115 Identities=21% Similarity=0.167 Sum_probs=74.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 08949999815899936899887077658998489987977898177878887588997239778978999999981000
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~ 700 (1458)
.++.++.+.||+||||||.+.+++.+++.....++.+...+-|.- ++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~--~~~------------------------------ 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DGI------------------------------ 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SSS------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCC------------------------------
T ss_conf 410548987678777447799986662578746999626743456--788------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 36886107986302689987886899999999987139989998087777896569999999998870896799970563
Q 000505 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1458)
Q Consensus 701 ~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~ 780 (1458)
-++++.+. .|+.---++..++-+||||++.+|.- |+.++... +.....|+.|+-.-|--
T Consensus 204 ---------~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a----~~aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 204 ---------GQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIA----VQASLTGHLVMSTLHTN 262 (401)
T ss_dssp ---------EEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEECCS
T ss_pred ---------CEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHH----HHHHHCCCEEEEEECCC
T ss_conf ---------70265587-----67799999999984138889845768---75999999----99972498589983367
Q ss_pred CHHCCCCE
Q ss_conf 20101788
Q 000505 781 EFLDAADL 788 (1458)
Q Consensus 781 ~~l~~~D~ 788 (1458)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.26 E-value=0.00077 Score=41.19 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCEEEECCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCCEEEECCEEEEECCCCCCC-CCCHHHHHHCCCCCCHHHHH
Q ss_conf 57678508949999815899936899887077--6589984899879778981778788-87588997239778978999
Q 000505 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYE 691 (1458)
Q Consensus 615 ~~nl~i~~G~~~~i~G~~GsGKStLl~~ilGe--~~~~~G~vi~~~g~iayv~Q~~wi~-~~TIreNIlfg~~~~~~~y~ 691 (1458)
.|++.+.+ +++.|.|||.|||||+++.+.=- |-. .|. .+...-+-++.-..|+ .....|++.-|.-. +
T Consensus 28 pNdi~~~~-~~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G~--~vpA~~~~i~~~d~I~~~~~~~d~~~~~~St----F- 98 (224)
T d1ewqa2 28 PNDLEMAH-ELVLITGPNMAGKSTFLRQTALIALLAQ-VGS--FVPAEEAHLPLFDGIYTRIGASDDLAGGKST----F- 98 (224)
T ss_dssp CEEEEESS-CEEEEESCSSSSHHHHHHHHHHHHHHHT-TTC--CBSSSEEEECCCSEEEEECCC------CCSH----H-
T ss_pred CCEEEECC-CEEEEECCCCCCCCHHHHHHHHHHHHHH-CCC--EEECCCEEEEECCEEEEEECCCCCCCCCCCH----H-
T ss_conf 55588478-6799978873453234556589999985-250--4613751994011699998777602378307----8-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC
Q ss_conf 99998100036886107986302689987886899999999987139989998087777896569999999998870-89
Q 000505 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQ 770 (1458)
Q Consensus 692 ~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l-~~ 770 (1458)
..+-+|++-.---..+..++|+||+.++=|+.-+..+....+..+. .+
T Consensus 99 -------------------------------~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~ 147 (224)
T d1ewqa2 99 -------------------------------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERR 147 (224)
T ss_dssp -------------------------------HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCC
T ss_conf -------------------------------9867889877502897727855454568623320025888888886237
Q ss_pred CEEEEEECCCCHHC
Q ss_conf 67999705632010
Q 000505 771 KTVLYTTHQLEFLD 784 (1458)
Q Consensus 771 kTvIlvTH~~~~l~ 784 (1458)
.+++++||..+...
T Consensus 148 ~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 148 AYTLFATHYFELTA 161 (224)
T ss_dssp CEEEEECCCHHHHT
T ss_pred CCEEEEEECHHHHH
T ss_conf 61378652023332
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.24 E-value=7.5e-05 Score=48.70 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=21.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 189499998899998779999982167799738999
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~I 1268 (1458)
..+..+-|+|+|||||||++++|++.+++..=-|.|
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.0059 Score=34.62 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=69.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 94999981589993689988707765899848998797789817787888758899723977897899999998100036
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~~d 702 (1458)
|-.++++|+.|+|||||++.+.|+-....... .+ |.++.+.....+. +
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~---------------~ 48 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDI---AG--------------TTRDVLREHIHID---------------G 48 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---TT--------------CCCSCEEEEEEET---------------T
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECC---CC--------------CCCCEEEEEEECC---------------C
T ss_conf 98999989999989999999968886675124---66--------------4220476532026---------------8
Q ss_pred HHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 8861079863026899--87886899999999987139989998087777896569999999998870896799970563
Q 000505 703 IEMWADGDLSVVGERG--INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1458)
Q Consensus 703 i~~lp~Gd~t~ige~G--~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~ 780 (1458)
.....+...| ..-.+.++..+..+...|.++|+++++-..+.-+.....+.+.+.+.....++.+|+|-+..
T Consensus 49 ------~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~ 122 (161)
T d2gj8a1 49 ------MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122 (161)
T ss_dssp ------EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECH
T ss_pred ------CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHH
T ss_conf ------23541365321224652024789999999874133201102565420345554445554201410102046544
Q ss_pred CHHCCCCEE
Q ss_conf 201017889
Q 000505 781 EFLDAADLV 789 (1458)
Q Consensus 781 ~~l~~~D~I 789 (1458)
+..+.....
T Consensus 123 Dl~~~~~~~ 131 (161)
T d2gj8a1 123 DITGETLGM 131 (161)
T ss_dssp HHHCCCCEE
T ss_pred HHHHHHHHH
T ss_conf 433558879
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.14 E-value=0.0065 Score=34.30 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=21.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85089499998158999368998870776
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-+.+|+++.|.|++|+|||+|+.-++-.+
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97898089999479997999999999726
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0021 Score=37.99 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCEEEEC-CCEEEEECCCCCCHHHHHHHHHCC--CCCCCCCEEEECCEEEEECCCCCCC-CCCHHHHHHCCCCCCHHHH
Q ss_conf 57678508-949999815899936899887077--6589984899879778981778788-8758899723977897899
Q 000505 615 TDKMKIMK-GSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQSFY 690 (1458)
Q Consensus 615 ~~nl~i~~-G~~~~i~G~~GsGKStLl~~ilGe--~~~~~G~vi~~~g~iayv~Q~~wi~-~~TIreNIlfg~~~~~~~y 690 (1458)
.|++.+.+ +....|.|||.|||||+++.+.=- |-. .|. .+..+-+-++--..|+ .-...|++.-|.-.=
T Consensus 32 pNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~--~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F---- 104 (234)
T d1wb9a2 32 ANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGS--YVPAQKVEIGPIDRIFTRVGAADDLASGRSTF---- 104 (234)
T ss_dssp CEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTC--CBSSSEEEECCCCEEEEEEC-----------C----
T ss_pred CEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCC--EEECCCEECCCCHHHEEEECCCCCCCCCHHHH----
T ss_conf 40579889953999954673136899998799999987-297--67417666134420234874675343653189----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C
Q ss_conf 999998100036886107986302689987886899999999987139989998087777896569999999998870-8
Q 000505 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S 769 (1458)
Q Consensus 691 ~~vi~~c~L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l-~ 769 (1458)
..+-+|++-.---..+..++|+||+.++=++.-+..+....+..+. +
T Consensus 105 --------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~ 152 (234)
T d1wb9a2 105 --------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK 152 (234)
T ss_dssp --------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT
T ss_pred --------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf --------------------------------999999999997454660885322235877456667898764543204
Q ss_pred -CCEEEEEECCCCH
Q ss_conf -9679997056320
Q 000505 770 -QKTVLYTTHQLEF 782 (1458)
Q Consensus 770 -~kTvIlvTH~~~~ 782 (1458)
+..++++||..+.
T Consensus 153 ~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 153 IKALTLFATHYFEL 166 (234)
T ss_dssp TCCEEEEECSCGGG
T ss_pred CCCEEEEECCHHHH
T ss_conf 54428985246877
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=1e-05 Score=55.07 Aligned_cols=162 Identities=12% Similarity=0.044 Sum_probs=78.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCC------CCC
Q ss_conf 49999889999877999998216779973899969617999978874130898167777656577703869------999
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL------EQH 1309 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~------~~~ 1309 (1458)
..|.|+|+.|+|||||+..+.+.+...++.+.+.+.+........+......+.|+...+.....++.... ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred -CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf -9999999999849289998400145753447999899159999999998605998799847677999998999999999
Q 000505 1310 -SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388 (1458)
Q Consensus 1310 -sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~ 1388 (1458)
..+++.+.. ...+.........+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 82 VDLTSFEQLA-LPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp ECHHHHHTTT-TTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 0377777788-999999988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8649947899724
Q 000505 1389 EETSRCTVITVAH 1401 (1458)
Q Consensus 1389 ~~~~~~TVI~IAH 1401 (1458)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.94 E-value=0.0068 Score=34.18 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=74.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 50894999981589993689988707765899848998797789817787888758899723977897899999998100
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L 699 (1458)
+++|.++.|.|+.|||||+|..-++-......+.+ .|+.-+ ...+.+.+ .++.+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~-------~~is~e-----------------~~~~~~~~--~~~~~ 76 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERA-------ILFAYE-----------------ESRAQLLR--NAYSW 76 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCE-------EEEESS-----------------SCHHHHHH--HHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-------CEEECC-----------------CCHHHHHH--HHHHC
T ss_conf 86984999991899999999999999998723244-------112126-----------------79999999--99982
Q ss_pred HHHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHH---HHHHHHHHH-HCCCEE
Q ss_conf 036886-10798630268998788689999999998713-998999808777789656999---999999887-089679
Q 000505 700 NQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVYS-NSDVYIFDDPFSAVDAHTGTH---LFKQCLMGL-LSQKTV 773 (1458)
Q Consensus 700 ~~di~~-lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~-~~~i~lLDdp~salD~~~~~~---if~~~i~~~-l~~kTv 773 (1458)
..|.+. ...+............. .+...-.+.+++.+ ++++.+.|............. ........+ ..+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (242)
T d1tf7a2 77 GMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITG 155 (242)
T ss_dssp SCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 998699854586179973000101-7999999999998408853322043143048999999999999999999869839
Q ss_pred EEEECCCC----------HH-CCCCEEEEEEC
Q ss_conf 99705632----------01-01788999929
Q 000505 774 LYTTHQLE----------FL-DAADLVLVMKD 794 (1458)
Q Consensus 774 IlvTH~~~----------~l-~~~D~I~vl~~ 794 (1458)
+++.|.-. -+ ..+|.|+.++.
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 156 LFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99985675125544577640464216999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.013 Score=32.07 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=29.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCCEEEECCEEEEECCC
Q ss_conf 5089499998158999368998870776----58998489987977898177
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHGKKAYVPQS 667 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~----~~~~G~vi~~~g~iayv~Q~ 667 (1458)
+.+|+++.|+|+.|+|||+|+..++-.+ +...+.. .-.+++.|+.-+
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~-~~~~~vl~~~~E 76 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGE-LPTGPVIYLPAE 76 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCC-CCCCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEECC
T ss_conf 558958999928999899999999999976997211123-578736898512
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.71 E-value=0.0088 Score=33.33 Aligned_cols=30 Identities=40% Similarity=0.378 Sum_probs=24.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 189499998899998779999982167799
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~ 1262 (1458)
.++..|-+.|||||||||.+.++++..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 410548987678777447799986662578
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.64 E-value=0.014 Score=31.78 Aligned_cols=168 Identities=12% Similarity=0.115 Sum_probs=75.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCE-EEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 61894999988999987799999821-6779973899969617999978874130-898167777656577703869999
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFR-VVEPSGGRILIDGVDISMIGLQDLRSRL-SIIPQDPMLFQGTVRTNLDPLEQH 1309 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~r-l~ep~~G~I~IDG~dI~~i~l~~LRs~i-siIpQdp~LF~gTIR~NLdp~~~~ 1309 (1458)
+.+|+.+-|.|++|+||||++.-+.. +..-..-.+.+-.. ..+.+....++ +...+-+.- .
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~--------------~ 94 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLR--------------Q 94 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGG--------------G
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCH--------------H
T ss_conf 78980899994799979999999997265533663457640---111135776999986458710--------------1
Q ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCC-----CCCH--HHH
Q ss_conf 99999999998492899984001457534479998991599999999986--05998799847677-----9999--989
Q 000505 1310 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL--LKKKRILVLDEATA-----SIDT--ATD 1380 (1458)
Q Consensus 1310 sDeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL--Lr~~~ILiLDEaTs-----slD~--~Td 1380 (1458)
.+..-.+.++...+.++.......-...+.+........ .++...+.. -.+++++++|=.+. +-+. +.-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~ 172 (277)
T d1cr2a_ 95 SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (277)
T ss_dssp CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC----------CHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 012222214567788898874035214662143310689--999986543213676259970542120346544306778
Q ss_pred HHHHHHHHHHC--CCCEEEEEECCH----------------HHH-------HHCCEEEEEECC
Q ss_conf 99999999864--994789972491----------------234-------102989999498
Q 000505 1381 NVIQQTIREET--SRCTVITVAHRI----------------PTV-------IDNDLVLVLDEG 1418 (1458)
Q Consensus 1381 ~~Iq~~I~~~~--~~~TVI~IAHRl----------------~ti-------~~~DrVlvL~~G 1418 (1458)
..+.+.+++.. .+|+|++++|=- +.+ ..+|.|+.+..-
T Consensus 173 ~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 999999999765016552031035632244455433332112123430015038699999846
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0027 Score=37.21 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+=.++++|.+|+|||||+++++|.-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999999999999999997787
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.028 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 61894999988999987799999821
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
+.+|+.+-|+|++|+||||++..|.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0024 Score=37.55 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 894999981589993689988707765899848
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
+|+.++++|++|.|||||+++|+|+.....|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.0026 Score=37.29 Aligned_cols=28 Identities=43% Similarity=0.597 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999815899936899887077658998
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G 652 (1458)
.++|+|.+|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.017 Score=31.21 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99981589993689988707765
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+.+.||.|+||||+.++++.++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.89 E-value=0.0072 Score=34.01 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=14.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999988999987799999821
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
+.|.|+|++||||||+.+.|.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.0036 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8949999889999877999998216779973899
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~ 1267 (1458)
.|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.76 E-value=0.0026 Score=37.32 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.045 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08949999815899936899887077
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
++-+++.++|+.||||||+.+.++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.75 E-value=0.0029 Score=36.97 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++++|.+|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.58 E-value=0.02 Score=30.71 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=23.3
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 9987139989998087777896569999999998870896799970563201
Q 000505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1458)
Q Consensus 732 ARAly~~~~i~lLDdp~salD~~~~~~if~~~i~~~l~~kTvIlvTH~~~~l 783 (1458)
++.-..+.|++++|-.- ... +....+.+.+ . ..+|-+++|-+..+..
T Consensus 129 ~~~~~~~~d~~l~~~~~-~~~-~~d~~l~~~l-~--~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 129 EKMKFYEYDFFIIISAT-RFK-KNDIDIAKAI-S--MMKKEFYFVRTKVDSD 175 (400)
T ss_dssp HHTTGGGCSEEEEEESS-CCC-HHHHHHHHHH-H--HTTCEEEEEECCHHHH
T ss_pred HHHHHHCCEEEEEECCC-CCC-HHHHHHHHHH-H--HCCCCEEEEEECCCCC
T ss_conf 87433226599996588-887-8899999999-9--7699879997086321
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0031 Score=36.73 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999815899936899887077658
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
.++|+|+.|||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.42 E-value=0.049 Score=27.82 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++.++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.33 E-value=0.0032 Score=36.62 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.|+++++.|++||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.28 E-value=0.064 Score=26.94 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 618949999889999877999998216
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+++|..+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.064 Score=26.93 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 85089499998158999368998870776589984899879778981778788875889972397789789999999810
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~ 698 (1458)
.+++..-+.+.||.|+|||++.+++.+++.. .++.+. .+
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---~~~~~~-------------------------------------~~- 75 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIK-------------------------------------GP- 75 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---EEEEEC-------------------------------------HH-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEE-------------------------------------HH-
T ss_conf 9998875788789987630477887877189---479988-------------------------------------79-
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHH---H
Q ss_conf 00368861079863026899878868999999999871399899980877778965---------69999999998---8
Q 000505 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH---------TGTHLFKQCLM---G 766 (1458)
Q Consensus 699 L~~di~~lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~---------~~~~if~~~i~---~ 766 (1458)
++.. +..| ...++-|-.+.+|-...|-|+++||.=...... ...++....+. +
T Consensus 76 ---~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 140 (265)
T d1r7ra3 76 ---ELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 140 (265)
T ss_dssp ---HHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-
T ss_pred ---HHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---9525------3165------158999999999986398435687546324557876788737999999999999628
Q ss_pred HHC--CCEEEEEECCCCHHCC
Q ss_conf 708--9679997056320101
Q 000505 767 LLS--QKTVLYTTHQLEFLDA 785 (1458)
Q Consensus 767 ~l~--~kTvIlvTH~~~~l~~ 785 (1458)
... +--+|..||+++.++.
T Consensus 141 ~~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 141 MSTKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp -----CCEEEECCBSCTTTSC
T ss_pred CCCCCCEEEEEECCCCHHCCH
T ss_conf 677799899991799222799
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.0068 Score=34.19 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 949999815899936899887077658
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
|.+++++||+||||+|+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.021 Score=30.56 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 8508949999815899936899887077658998489987
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~ 658 (1458)
-+++|.++.+.|+.||||||+...++....+..|.++.++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid 89 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 89 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9667358998057774789999999999870898799986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.20 E-value=0.0048 Score=35.29 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+||+|++|||||||+..|.+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.14 E-value=0.02 Score=30.78 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-++|+|++|+|||||..+++..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.11 E-value=0.005 Score=35.15 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+||+|+.++|||||++++.|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0045 Score=35.53 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89499998158999368998870776589
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~~~ 650 (1458)
+.-.++|.|+.|+|||||+..+...+...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 83289743899998999999999999756
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.007 Score=34.07 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 949999889999877999998216
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.06 E-value=0.0063 Score=34.40 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999988999987799999821677
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
|..|.|+||+|||||||.+.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.03 E-value=0.005 Score=35.20 Aligned_cols=37 Identities=41% Similarity=0.717 Sum_probs=29.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 50894999981589993689988707765899848998
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~ 657 (1458)
++.+.-+.|+|++||||||+++++++++++.. .++.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~-rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC-CEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CEEEC
T ss_conf 98378889994035662578999865301456-23311
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.98 E-value=0.0066 Score=34.26 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.++++|++|+|||||+++|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.96 E-value=0.039 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8508949999815899936899887077
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-+++|+++.|.|+.|||||+|..-++-.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9558879999858989889999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0085 Score=33.47 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.|.+++|+||+|+||+||.+.++-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.008 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 9999815899936899887077658998489987977898177878
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi 670 (1458)
++||.|++||||||+.+.|.-.+...... ...-.+..++++.|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134--578843999346532
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.87 E-value=0.0027 Score=37.21 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 894999981589993689988707765899848
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
+|+.++++|++|.|||||+++|+|+.....|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.86 E-value=0.0081 Score=33.63 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999815899936899887077658
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
+++|.|++|||||||.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.85 E-value=0.019 Score=30.94 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.0
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 67850894999981589993689988707765
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 617 nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.+.-++|.++-++|.+||||||+.+.+.-.+.
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98589986999989999998999999998877
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.82 E-value=0.0031 Score=36.74 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEC
Q ss_conf 89499998899998779999982167799738999696179999788741308981
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIp 1289 (1458)
+|+...++|.||.|||||+++|.+-.....|.|.-.. .-|.|.-|.+--+-+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~ 147 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHT 147 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEEC
T ss_conf 3564999877873487898751517676403555335----897124434788862
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.79 E-value=0.086 Score=25.98 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++..++++||+|+||||.+.-|...+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97799998999998899999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.78 E-value=0.016 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=30.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 850894999981589993689988707765899848
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
-++.|.++-+.|+.|||||++...++....+..|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v 88 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC 88 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 866754789805876522799999999997079989
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.029 Score=29.54 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=30.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 999981589993689988707765899848998797789817787888
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT 672 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~ 672 (1458)
+++|.|++||||||+.+.|...+....+. -++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----RRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----CCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----CCEEEEEEEEEECC
T ss_conf 99996899998768999999997304689-----96599952156898
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.72 E-value=0.0063 Score=34.41 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+|++|..|+|||||++.+.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.71 E-value=0.011 Score=32.59 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++++|.+|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.71 E-value=0.09 Score=25.84 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=16.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+...++++||+|+||||.+.-|.-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.70 E-value=0.012 Score=32.47 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.++++|+.|+|||||++.+.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.011 Score=32.58 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.61 E-value=0.0091 Score=33.23 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=17.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
..++|+|+.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.60 E-value=0.013 Score=32.01 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089499998158999368998870776
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
|+|..++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.024 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089499998158999368998870776
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0056 Score=34.81 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++++|.+++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.52 E-value=0.081 Score=26.20 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.-+.+.||.|+|||++.+++.+++.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.0086 Score=33.42 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHH
Q ss_conf 9999889999877999998216779973899969617999978874130898167777656577
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1300 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR 1300 (1458)
.|||.|++||||||+.+.|..+..-..+ ..++.+|++|.+......+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHH
T ss_conf 9999689999876899999999730468-----------------9965999521568984588
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.34 E-value=0.011 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.+.+.||.|+||||+.++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.33 E-value=0.11 Score=25.25 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8949999889999877999998216
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.32 E-value=0.018 Score=31.09 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8949999889999877999998216779973899969
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1270 (1458)
+|+.|.|.|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.11 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=24.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 61894999988999987799999821677
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
+++..-+-+.||.|+|||++++++.+-..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.014 Score=31.92 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999988999987799999821677
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|..+-|+||||+||+||.+.|+.-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.12 E-value=0.083 Score=26.09 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
-.-+.+.||.|||||++.+++..+..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.10 E-value=0.12 Score=24.91 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=56.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99981589993689988707765899848998797789817787888758899723977897899999998100036886
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~~di~~ 705 (1458)
+.|.|++|+|||-|++++..++....-. +.|++- .+.. ..+.+.+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~-------~~~~~~---------~~~~--------~~~~~~~~~--------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYR-------VIYSSA---------DDFA--------QAMVEHLKK--------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCC-------EEEEEH---------HHHH--------HHHHHHHHH---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC-------EEEECH---------HHHH--------HHHHHHHHC---------
T ss_conf 7998889983999999999874467650-------488443---------7879--------999999871---------
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 1079863026899878868999999999871399899980877778-9656999999999887-0896799970563
Q 000505 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGL-LSQKTVLYTTHQL 780 (1458)
Q Consensus 706 lp~Gd~t~ige~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~sal-D~~~~~~if~~~i~~~-l~~kTvIlvTH~~ 780 (1458)
++ ..-.+..+.++|++++||.=.-- +......+|. .+... ..++.+|+.+...
T Consensus 86 ------------------~~---~~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 ------------------GT---INEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp ------------------TC---HHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred ------------------CC---HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf ------------------66---2667898762130101126550586577889999-9998763166389954875
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.09 E-value=0.018 Score=31.07 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=22.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0894999981589993689988707765
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++|.++.++|.+||||||+.+.+.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.09 E-value=0.012 Score=32.39 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+|+|+|++|+|||||+++|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.0071 Score=34.06 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 4999981589993689988707765899848
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
..+.|+|+.|+|||||++.+..++....+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6999988999719999999999999779979
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.00 E-value=0.026 Score=29.88 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|.|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.96 E-value=0.014 Score=31.87 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0894999981589993689988707765
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++.-+++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.012 Score=32.44 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998899998779999982167799
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPS 1262 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~ 1262 (1458)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.90 E-value=0.017 Score=31.27 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 94999981589993689988707765899848
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
..+++|.|+.||||||+.+.|.-.+......+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.86 E-value=0.019 Score=30.90 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-+||+|.+.+|||||+++|+|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.059 Score=27.19 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.76 E-value=0.026 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=17.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.+++.|+|++||||||+.+.|..+++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.76 E-value=0.022 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.75 E-value=0.14 Score=24.46 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHH
Q ss_conf 5998799847677999998999999999864--994789972491234
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV 1406 (1458)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti 1406 (1458)
.+..++++||.-.+-|++--..+-..+-+.+ .+++++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 977278554545686233200258888888862376137865202333
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.14 Score=24.32 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850894999981589993689988707765
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.++...-+.+.||.|+|||++.++|..++.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 999888678668998882289999999829
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.024 Score=30.16 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|+.|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.59 E-value=0.026 Score=29.89 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1894999988999987799999821677
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.55 E-value=0.15 Score=24.22 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+...++++||+|+||||.+.-|.-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.028 Score=29.64 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=13.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
..++|+||+|+||+||.+.++.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.50 E-value=0.0059 Score=34.63 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
.++++|..|+|||||++++.|+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.41 E-value=0.027 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.027 Score=29.68 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.029 Score=29.55 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189499998899998779999982167
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.29 E-value=0.026 Score=29.85 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999889999877999998216779
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep 1261 (1458)
=.|||.|++||||||+.+.|......
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89997898878999999999998363
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.25 E-value=0.029 Score=29.55 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1894999988999987799999821677
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
+.|..|.++|.+||||||+...|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.17 Score=23.85 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=15.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499998158999368998870776
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-..++|+||.||||||+.+.|...+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.19 E-value=0.019 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 4999981589993689988707765899848
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
..++|+|..|||||||+..++.++......+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v 32 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 0999980999989999999999998679837
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.18 E-value=0.039 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=20.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089499998158999368998870776
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
|+|-.++++|+.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.05 E-value=0.18 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8508949999815899936899887077
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-+++|+++.|.|++|+|||+|..-++..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9969839999947999999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.97 E-value=0.027 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.93 E-value=0.034 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.++.|+|+.||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=0.032 Score=29.22 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99981589993689988707765
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++|+||+||||+||.+.++.+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.92 E-value=0.032 Score=29.17 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+|.++|+||+|||||+++|++-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.027 Score=29.77 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.19 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 499998158999368998870776589
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~~ 650 (1458)
..+.+.||.|+||+|+..++..++...
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 059888899875899999999984685
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.78 E-value=0.035 Score=28.89 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.74 E-value=0.11 Score=25.28 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.74 E-value=0.064 Score=26.95 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+.-.++|.|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.62 E-value=0.035 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999988999987799999821677
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.57 E-value=0.077 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+..++|+|...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.041 Score=28.36 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCC
Q ss_conf 99998899998779999982167799738999696179999788741308981677776
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF 1295 (1458)
.|||.|++||||||+.+.|...+.-.. + ..-...+.+++||.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~------------~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--V------------DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--S------------CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--C------------CCCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101--3------------45788439993465322
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.36 E-value=0.043 Score=28.24 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.22 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=14.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
..++++||+|+||||.+.-+.-.+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.12 Score=24.84 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=31.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 508949999815899936899887077658998489987977898177
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~ 667 (1458)
+++|+++.|.|+.|||||+|..-++-........- ...+.+.|+..+
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~-~~~~~~~~i~~~ 77 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG-GGEGKCLYIDTE 77 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTT-CCSCEEEEEESS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEEC
T ss_conf 86996999983899988999999999863124312-689639999402
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.046 Score=28.03 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99981589993689988707765
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++|+||+||||+|+.+.++-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.1 Score=25.45 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999815899936899887077
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-+++++|..|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.04 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999988999987799999821677
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
...+.|+||||+||+||++.|.+-.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.17 E-value=0.054 Score=27.49 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.15 E-value=0.23 Score=22.87 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=17.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5089499998158999368998870776
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++++.++.+.||.||||||+.+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.024 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+|..+.++|+.||||||+.+.|.-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.23 Score=22.83 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 189499998899998779999982167799738999696
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~ 1271 (1458)
++...+-+.||.|+|||++++++.+-.... -+.+++-
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~ 79 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHH
T ss_conf 988867866899888228999999982998--7998869
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.055 Score=27.46 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|+.|+|||||++.+.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.08 E-value=0.054 Score=27.51 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998158999368998870
Q 000505 625 KVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~il 644 (1458)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.05 E-value=0.054 Score=27.47 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.02 E-value=0.052 Score=27.61 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.99 E-value=0.055 Score=27.44 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-.+||+|.+.+|||||+.+|++.-
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 879999699854999999998236
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.98 E-value=0.049 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 499998158999368998870
Q 000505 624 SKVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~il 644 (1458)
.+++|+|+.||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.96 E-value=0.13 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 949999815899936899887077
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+..++|+|-..+|||||++++.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.94 E-value=0.037 Score=28.72 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999988999987799999821677
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+|+|.|++|||||||.+.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.93 E-value=0.04 Score=28.44 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 49999889999877999998216779973899969
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1270 (1458)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.93 E-value=0.052 Score=27.62 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0894999981589993689988707765
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++.-+++|.|..||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.14 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99981589993689988707765
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
..+.||.|+||||+.+++..++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.92 E-value=0.0027 Score=37.21 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.7
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 678508949999815899936899887077
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 617 nl~i~~G~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
.+++.+| +++|+|+|||||||++.+|.--
T Consensus 19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9974998-0899889999879999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.85 E-value=0.053 Score=27.57 Aligned_cols=22 Identities=45% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.072 Score=26.56 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850894999981589993689988707765
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
-+++|+++.|.|+.|||||+|...++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.088 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9618949999889999877999998216
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
-+++|+.+-|.|++||||||+..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.78 E-value=0.11 Score=25.22 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 89499998158999368998870
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~il 644 (1458)
.|.-+.++|++|+||||+...+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999998189999899999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.046 Score=28.01 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
++.+++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.05 Score=27.74 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.67 E-value=0.068 Score=26.77 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=40.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 18949999889999877999998216779973899969617999978874130898167777656577703869999999
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDe 1312 (1458)
|+|-+|.|+|+.||||||+.+.|..-+ |-..|+-- +-+|... ++..-....++..++-.....++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~g-------dllr~~~----~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATG-------DMLRAMV----ASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHH-------HHHHHHH----HHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH----HCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----98577577-------8899887----42674330233132167743330
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000505 1313 EIWEVINK 1320 (1458)
Q Consensus 1313 eI~~aL~~ 1320 (1458)
.+.+.+..
T Consensus 66 ~v~~~~~~ 73 (190)
T d1ak2a1 66 MVLELIEK 73 (190)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEHH
T ss_conf 24531113
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.66 E-value=0.057 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089499998158999368998870776
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++.-.++++|..|||||||++.+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.18 Score=23.65 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.58 E-value=0.06 Score=27.14 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+|++|...+|||||++++.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.54 E-value=0.26 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=14.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
...++++||+|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.54 E-value=0.066 Score=26.86 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.54 E-value=0.059 Score=27.19 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|..+||||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.26 Score=22.39 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99981589993689988707765
Q 000505 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+.+.||.|+||||++.+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.27 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 5998799847677999998999999999864994789972491234
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1406 (1458)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti 1406 (1458)
.+.+++++||+-. +.......+.+.+.+...++.+|.++++++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.42 E-value=0.035 Score=28.91 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 4999981589993689988707765899848998797789817787
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~w 669 (1458)
-+++|+|++||||||+.+.+...+... | -+.+.++|+.+
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~------v~~~iI~~Dsf 43 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G------VKAVSIEGDAF 43 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T------CCEEEEEGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C------CCEEEEECCCC
T ss_conf 899998999780999999999997156-9------97699947778
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.41 E-value=0.068 Score=26.74 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.36 E-value=0.072 Score=26.56 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.36 E-value=0.06 Score=27.14 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.16 Score=23.97 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-.++++|..|+|||||++.+++.-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.28 Score=22.17 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEEECCHHH
Q ss_conf 059987998476779999989999-9999986--499478997249123
Q 000505 1360 LKKKRILVLDEATASIDTATDNVI-QQTIREE--TSRCTVITVAHRIPT 1405 (1458)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~--~~~~TVI~IAHRl~t 1405 (1458)
..+..++++||.-.+-++.--..+ ...++.. ...|.+++.+|....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 5466088532223587745666789876454320454428985246877
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.22 E-value=0.077 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 94999988999987799999821677997389
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I 1266 (1458)
...|+|.|+.||||||+.+.|...+.....++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.049 Score=27.78 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99988999987799999821677
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
|.|+|||||||+||.+.|..-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.084 Score=26.08 Aligned_cols=88 Identities=23% Similarity=0.172 Sum_probs=50.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 18949999889999877999998216779973899969617999978874130898167777656577703869999999
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDe 1312 (1458)
+..+.|-++|..||||||+.+.++.- .|.+.|+ .+++++ -+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------~D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------RDTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------HHHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------HHHHHH---------------------------HH
T ss_conf 99989999899999899999999976----5978976--------077778---------------------------88
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999849289998400145753447999899159999-99999860599879984
Q 000505 1313 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL-VCLARVLLKKKRILVLD 1369 (1458)
Q Consensus 1313 eI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQl-l~LARALLr~~~ILiLD 1369 (1458)
.+.+.++. .+..|.+..+ +..|++..+|+. +.+|+..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.09 E-value=0.028 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 850894999981589993689988707765899848
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
-++.|.++.+.|+.|||||+++..+........|.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~ 91 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVA 91 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 866633699964887488999999999875489889
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.083 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08949999815899936899887077658
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.05 E-value=0.071 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 59999999998605998--79984767799999899999999986499478997249
Q 000505 1348 GQRQLVCLARVLLKKKR--ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402 (1458)
Q Consensus 1348 GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHR 1402 (1458)
.+.+-..+++..++++. |++...++.....+....+.+.+... ..+|++++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 899999999999827775168763256310034999999973867-88589998204
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.05 E-value=0.076 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189499998899998779999982167
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+..-||.+||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.98 E-value=0.082 Score=26.13 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.18 Score=23.65 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||++.+.+.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.86 E-value=0.08 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998899998779999982167
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
-.|+|-|..||||||+++.|.+..
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.12 Score=24.86 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 85089499998158999368998870776589984899879778981778
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~ 668 (1458)
-+++|+++.|.|+.|||||+|...++.+........ .....+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-YPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-BCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECHHH
T ss_conf 976897999988998878899999999997444316-6662488740177
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=0.071 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.79 E-value=0.073 Score=26.51 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
...+.+.||.||||||+.++|.+++.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999889799889999999999865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.78 E-value=0.074 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999815899936899887077
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
-+++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.68 E-value=0.093 Score=25.73 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998158999368998870
Q 000505 625 KVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~il 644 (1458)
+++|+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.66 E-value=0.16 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=18.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 785089499998158999368998870
Q 000505 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 618 l~i~~G~~~~i~G~~GsGKStLl~~il 644 (1458)
.-.-.|.-+.++|++|+||||+...+.
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999999998089999899999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.036 Score=28.78 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999988999987799999821677
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|..|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.071 Score=26.59 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999988999987799999821677
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.59 E-value=0.093 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 894999988999987799999821677997389996
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~ID 1269 (1458)
+...|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.56 E-value=0.068 Score=26.74 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998899998779999982167
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.55 E-value=0.086 Score=25.98 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
++.+||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.46 E-value=0.063 Score=27.01 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889999877999998216
Q 000505 1238 IGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl 1258 (1458)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.44 E-value=0.097 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999981589993689988707
Q 000505 625 KVAVCGSVGSGKSSLLSSILG 645 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilG 645 (1458)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.11 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8949999815899936899887077658
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
+|.+++|-|+-||||||+.+.+...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.19 Score=23.50 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999981589993689988707
Q 000505 625 KVAVCGSVGSGKSSLLSSILG 645 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilG 645 (1458)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.35 E-value=0.1 Score=25.49 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||++.+.+.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.078 Score=26.32 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 94999988999987799999821677997389996961
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~d 1272 (1458)
.-.|||+|+.|||||||++.|.+.+...+-+|-+=-+|
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD 91 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 32897438999989999999999997569833220377
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.34 E-value=0.06 Score=27.14 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.1 Score=25.46 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|+|+|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.11 Score=25.13 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.18 E-value=0.0025 Score=37.44 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=28.4
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 022116896189499998899998779999982167
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1224 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.+++.++.+.+| .+.|+|++||||||++.+|.-..
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.01 E-value=0.35 Score=21.43 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
-+-+.||.|+|||++++++.+-.
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.98 E-value=0.092 Score=25.76 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
=||.|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.075 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499998899998779999982167
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.-+|+|+|++++|||||+++|.+--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.84 E-value=0.16 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
=||.++|+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.73 E-value=0.13 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08949999815899936899887077658
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
.+|.++++-|.-||||||+.+.+.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.12 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.-+.++||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.57 E-value=0.098 Score=25.57 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.51 E-value=0.086 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.50 E-value=0.13 Score=24.55 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18949999889999877999998216
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
++.-||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.50 E-value=0.13 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.46 E-value=0.14 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
-.++|-||.||||||..+.|.-++.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.45 E-value=0.14 Score=24.50 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.41 E-value=0.072 Score=26.58 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899998779999982167
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
|.|+||+||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.38 E-value=0.11 Score=25.15 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.|||+|++.+|||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.11 Score=25.24 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+++|+|+-++|||+|++.+.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.13 Score=24.56 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.14 Score=24.35 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.15 Score=24.29 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.11 Score=25.09 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999988999987799999821677
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.12 Score=25.00 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.14 Score=24.32 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.12 E-value=0.15 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.10 E-value=0.13 Score=24.65 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
-.|||+|..||||||+.+.|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.05 E-value=0.12 Score=24.87 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||++.+.++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.03 E-value=0.21 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=10.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 08949999815899936899887
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSI 643 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~i 643 (1458)
-.|.=+.++|++|+||||+...+
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHH
T ss_conf 99999999808999999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.19 Score=23.46 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999815899936899887077658
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.96 E-value=0.13 Score=24.76 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.11 Score=25.26 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=28.6
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 678508949999815899936899887077658
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 617 nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
=+.+.+|+..+|.|+.|+|||+|+..|......
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 256457875568679998878999999997751
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.15 Score=24.19 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.16 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 18949999889999877999998216779
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep 1261 (1458)
+.|..|.|-|.-||||||++..|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.80 E-value=0.14 Score=24.35 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.79 E-value=0.14 Score=24.40 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|+|+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.74 E-value=0.16 Score=24.00 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 99998158999368998870-7765
Q 000505 625 KVAVCGSVGSGKSSLLSSIL-GEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~il-Ge~~ 648 (1458)
+++++|..|+|||||++.+. |+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.68 E-value=0.14 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC----CEEEEECCC
Q ss_conf 9999815899936899887077658998489987----977898177
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH----GKKAYVPQS 667 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~~----g~iayv~Q~ 667 (1458)
=+.++||+|||||-|.+.+.+.+..- .+.++ ...+||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCEEEECCEEECC
T ss_conf 47998999988999999999873898---898625511411111044
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.62 E-value=0.13 Score=24.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.||+++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.61 E-value=0.099 Score=25.54 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 61894999988999987799999821677997389996961799997887413089816777765657770386999999
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1311 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sD 1311 (1458)
++.+..|-|.|+.||||||+.+.|..-+ |-..|+.-| -+|..+ ... ....-++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~-~~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSG-SARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHT-CHHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHH-HHHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------899999---876-7651456777763137762
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9999999984928999840014575344799989915999999999860599879984767
Q 000505 1312 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1458)
Q Consensus 1312 eeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaT 1372 (1458)
+.+...+.. .+.......+..+-+ .+..-..|--.+.+.+.....++.+|.+.
T Consensus 70 ~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~ 122 (194)
T d3adka_ 70 ETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP 122 (194)
T ss_dssp HHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred HEEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 224410245-----664032235660243---11101578999999837752000033312
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.57 E-value=0.44 Score=20.71 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899998779999982167
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+-+.||.|+||+|++..+.+.+
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9888999875999999999821
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.57 E-value=0.17 Score=23.86 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.47 E-value=0.17 Score=23.82 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850894999981589993689988707765
Q 000505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 619 ~i~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
..++|.++.+.|+.|||||||.+.++..+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 579982999966877658899999876422
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.47 E-value=0.15 Score=24.15 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999988999987799999821677
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
-.|.++|+.||||||+.+.|.+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=0.13 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 999981589993689988707765899848
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
-+.|+|++|||||+++..++-..-...+.+
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 589990799968999999999998479988
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.36 E-value=0.15 Score=24.26 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-+||+|.+.+|||||+.+|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.32 E-value=0.32 Score=21.75 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=46.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 96189499998899998779999982167799738-99969617999978874130898167777656577703869999
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR-ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~-I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~ 1309 (1458)
-++.|..+-+.|++|+||||+..-+..-..-.+|. |+||... .++.+.+++ +++=| +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--679999998-09988-----------995896699
Q ss_pred CHHHHHHHHHH
Q ss_conf 99999999998
Q 000505 1310 SDQEIWEVINK 1320 (1458)
Q Consensus 1310 sDeeI~~aL~~ 1320 (1458)
+.|++.+.++.
T Consensus 122 ~~E~~~~~~~~ 132 (269)
T d1mo6a1 122 TGEQALEIADM 132 (269)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 89999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.27 E-value=0.19 Score=23.49 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.21 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 96189499998899998779999982
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALF 1256 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1458)
=+++|+.+-|.|++||||||+..-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.24 E-value=0.15 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.++|+.||||||+.+.+.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.15 Score=24.22 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.23 E-value=0.15 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999815899936899887077658
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
.++.|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.22 E-value=0.18 Score=23.57 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=11.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998158999368998870
Q 000505 625 KVAVCGSVGSGKSSLLSSIL 644 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~il 644 (1458)
+++|+|+.||||||..+.+.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.21 E-value=0.18 Score=23.64 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=54.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998899998779999982167799738999696179999788741308981677776565777038699999999999
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDeeI~~ 1316 (1458)
-+-++||+|+||||+..+|.+-... +-+.+++ .++|+... . ..+..+.... ...+....
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~--------d~~~~~~~---~----~~~~~~~~~~----~~~~~~~~ 92 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN--------DTFKQQHP---N----FDELVKLYEK----DVVKHVTP 92 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT--------HHHHTTST---T----HHHHHHHHGG----GCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC--------HHHHHHHC---C----CCCCCHHHHH----HHHHHHHH
T ss_conf 9998897998899999999998651--5489832--------89999852---5----7641133067----89999875
Q ss_pred HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 999849289998400145753447999899159999999998605998799847677999998
Q 000505 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379 (1458)
Q Consensus 1317 aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~T 1379 (1458)
......+......+..+.+. +.+.+.+-..-..+++.. +......+.+..++..-+..-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~ 151 (273)
T d1gvnb_ 93 YSNRMTEAIISRLSDQGYNL-VIEGTGRTTDVPIQTATM---LQAKGYETKMYVMAVPKINSY 151 (273)
T ss_dssp HHHHHHHHHHHHHHHHTCCE-EECCCCCCSHHHHHHHHH---HHTTTCEEEEEEECCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH---HHHCCCEEEEEECCCCCHHHH
T ss_conf 43212899999998617897-545555656789999999---987697499974478720222
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.20 E-value=0.38 Score=21.21 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.18 E-value=0.11 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998158999368998870776
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+--+++++|..|+|||||++.+.+.-
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 66899999999998899998873387
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.17 E-value=0.12 Score=24.81 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89499998899998779999982167799738999696179999788741308981677776565777038699999999
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1313 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDee 1313 (1458)
+-..|.|+|+.||||||+...|..-+ |-+.|+.- +-+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998492899984001457534479998991599999999986059987998476
Q 000505 1314 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371 (1458)
Q Consensus 1314 I~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1371 (1458)
....+...-.... ...-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~----~~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNV----KANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHH----HTTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHH----CCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 7899999988640----03777535404---313689999999861545543125798
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.16 E-value=0.11 Score=25.32 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999889999877999998216779973899969617999978874130898167777
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~L 1294 (1458)
.|||.|.|||||||+.+.|....... | -...+|.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.18 Score=23.55 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.96 E-value=0.19 Score=23.43 Aligned_cols=42 Identities=29% Similarity=0.242 Sum_probs=30.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECC
Q ss_conf 189499998899998779999982167799--738999696179
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPS--GGRILIDGVDIS 1274 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~--~G~I~IDG~dI~ 1274 (1458)
+.|..|-+.|.+||||||+.+.|.+..... --.+.+||-+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.17 Score=23.71 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.|||.|.+|||||||...|....
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.81 E-value=0.22 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5089499998158999368998870776
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++|+++.|.|+.|+|||+|..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.77 E-value=0.38 Score=21.17 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999815899936899887077
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe 646 (1458)
.+++++|..|+|||||+..++..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 69999999995989999999729
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.18 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+|.|+|+.||||||....|..-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.17 Score=23.75 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=0.21 Score=23.07 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999988999987799999821677
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.22 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||+..+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.18 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.47 E-value=0.15 Score=24.19 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=27.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 50894999981589993689988707765899848998
Q 000505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1458)
Q Consensus 620 i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~vi~~ 657 (1458)
++++..+.++||.|+|||++.+++++++. |.++.+
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~i 185 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNV 185 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEE
T ss_conf 99767699989999888999999999859---978999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.44 E-value=0.17 Score=23.78 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.42 E-value=0.22 Score=22.92 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.42 E-value=0.36 Score=21.41 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 949999815899936899887077658998
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~~~~G 652 (1458)
...+.+.||.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.18 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||+..+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.13 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.30 E-value=0.18 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
...+.+.||.|+||||++++++.++.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 74499987999988899999999987
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.26 E-value=0.13 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.22 Score=22.97 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.15 E-value=0.23 Score=22.84 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499998899998779999982167
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.19 Score=23.42 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.07 E-value=0.23 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8949999889999877999998216779
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep 1261 (1458)
+|.-|+|-|.-||||||++..|....+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.04 E-value=0.24 Score=22.73 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0894999981589993689988707765
Q 000505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
..+..+.|.|+.|+|||||+..++.+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.23 Score=22.83 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|+.|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=0.25 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+++|-||.||||+|+.+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.87 E-value=0.21 Score=23.10 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.84 E-value=0.22 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999988999987799999821677
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
-+|+|-||.||||||..+.|..-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.73 E-value=0.29 Score=22.02 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 618949999889999877999998
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQAL 1255 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L 1255 (1458)
+++|+.+-|.|++|+|||++..-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 969839999947999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.69 E-value=0.24 Score=22.64 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94999988999987799999821
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
.=||.+||+.|+|||||++.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.66 E-value=0.24 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499998899998779999982167
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
.+..+.|+|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.26 Score=22.47 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.3 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 961894999988999987799999821
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
-+++|..+-|.|++|+|||++..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.52 E-value=0.27 Score=22.26 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+|-|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.52 E-value=0.29 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 61894999988999987799999821
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
+++|+.+-|.|++|+|||++..-+.-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.24 Score=22.71 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|||+|..||||||..+.|-.+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.41 E-value=0.19 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.39 E-value=0.37 Score=21.24 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999815899936899887077658998
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G 652 (1458)
+++++|..|+|||||++-+.....++.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.39 E-value=0.23 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.33 E-value=0.24 Score=22.69 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999815899936899887077658
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
.+++|.|..||||||+++.|...+..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98999899878999999999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.32 E-value=0.21 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998899998779999982167
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
-+|.|.|+.||||||+.+.|..-+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.29 E-value=0.22 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.25 E-value=0.24 Score=22.72 Aligned_cols=50 Identities=28% Similarity=0.318 Sum_probs=34.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-HHHH
Q ss_conf 1894999988999987799999821677997389996961799997-8874
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLR 1282 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR 1282 (1458)
+.+..+.+||+||+||||.+-=|.+.+.-.+-+|.+=..|...++- ++|+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 997799998999998899999999999977990799981366654026676
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=0.26 Score=22.46 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9618949999889999877999998216779973-89996961
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG-RILIDGVD 1272 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G-~I~IDG~d 1272 (1458)
-++.|..+-|.|++||||||+..-+..-..-..| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.18 E-value=0.24 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-++++|++++|||||+..|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.17 E-value=0.3 Score=21.95 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999815899936899887077658
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
-++|+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.09 E-value=0.26 Score=22.40 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.07 E-value=0.26 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.07 E-value=0.31 Score=21.81 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 96189499998899998779999982
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALF 1256 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1458)
=+++|+.+-|.|++||||||+..-+.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.98 E-value=0.23 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.90 E-value=0.35 Score=21.42 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999988999987799999821677
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
-+++|||+.-+|||||+++|.+--.
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 2789986675443555425426615
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.79 E-value=0.24 Score=22.67 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.74 E-value=0.16 Score=24.03 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8949999889999877999998216779973899969617
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1273 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI 1273 (1458)
++.-+.++||||+|||.|.++|.+.... --+.+|+-++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 9866999899998888999998621322--1000344330
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.74 E-value=0.24 Score=22.64 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
|+.++|+.|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=85.68 E-value=0.25 Score=22.56 Aligned_cols=29 Identities=41% Similarity=0.595 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999988999987799999821677997389996
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~ID 1269 (1458)
.|.++|+.||||||+.+.|...+ |--.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=0.3 Score=21.96 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.27 Score=22.26 Aligned_cols=117 Identities=12% Similarity=0.138 Sum_probs=61.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 49999889999877999998216779973899969617999978874130898167777656577703869999999999
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDeeI~ 1315 (1458)
-+|.|+|+.||||||..+.|..-+ |-..|+- -+-+|..+ -++...+.-.+.+.+.-.....|+.+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~ 67 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITI 67 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 399997999999899999999986----9926768-------89999988---762046899999997069721134036
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--C-EEEEECC
Q ss_conf 999984928999840014575344799989915999999999860599--8-7998476
Q 000505 1316 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK--R-ILVLDEA 1371 (1458)
Q Consensus 1316 ~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~--~-ILiLDEa 1371 (1458)
..+... +........ .-+..+.+ .+...+.|.-.+.+.+-... . ++++|.+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~---g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID---GFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE---SCCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC---CCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101---1030489999986442105543389962476
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.34 E-value=0.17 Score=23.88 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 599879984767799999899999999986499478997249123410
Q 000505 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1408 (1458)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~ 1408 (1458)
.+.+++++||.- .+.......+.+.+......+..|.++++.+.+..
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 872288614344-31214789876411247764478861487665657
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.34 E-value=0.35 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9618949999889999877999998216779
Q 000505 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1458)
Q Consensus 1231 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~ep 1261 (1458)
..++|..|.+.|.=||||||+++.+.+-...
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.29 Score=22.09 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.29 E-value=0.055 Score=27.46 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.04 E-value=0.27 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999981589993689988707
Q 000505 625 KVAVCGSVGSGKSSLLSSILG 645 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilG 645 (1458)
-++|+|++|||||||..+|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.96 E-value=0.36 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=14.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499998158999368998870776
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
...++|+|+.||||||+.+.|.-.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.34 Score=21.59 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999815899936899887077
Q 000505 625 KVAVCGSVGSGKSSLLSSILGE 646 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe 646 (1458)
+++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.88 E-value=0.35 Score=21.45 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999815899936899887
Q 000505 625 KVAVCGSVGSGKSSLLSSI 643 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~i 643 (1458)
++.++|..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.85 E-value=0.24 Score=22.68 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.|||+|+-++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.28 Score=22.18 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||.++|..|+|||||++.+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.81 E-value=0.36 Score=21.41 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|.|-|.-||||||++..|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=84.80 E-value=0.25 Score=22.53 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 49999889999877999998216779973899969
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1270 (1458)
+.|-++|+.||||||+.+.|..-+ |--.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 988998899998899999999994----9987865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.32 Score=21.79 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.|+|-||.||||||+.+.|..-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.66 E-value=0.35 Score=21.50 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=30.2
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 67850894999981589993689988707765899848
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 617 nl~i~~G~~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
-+.+.+||..+|.|+.|+|||+|+..+.....+....+
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v 99 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 99 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSE
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 25636788777667999898999999999887617996
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.36 Score=21.41 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899998779999982167
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.3 Score=22.00 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.+||..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=0.29 Score=22.05 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.47 Score=20.49 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.52 E-value=0.3 Score=21.97 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.50 E-value=0.39 Score=21.10 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89499998899998779999982167799738999696179999788741308981677776565777038699999999
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1313 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp~LF~gTIR~NLdp~~~~sDee 1313 (1458)
..-+|.|+|+.||||||+...|..-+ |-..|+- -+-+|..+ ++...+.-.+.+.++......|+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~----g~~~is~-------gdllr~~~----~~~~~~~~~~~~~~~~~~~v~~~~ 69 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF----ELKHLSS-------GDLLRDNM----LRGTEIGVLAKTFIDQGKLIPDDV 69 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB----CCEEEEH-------HHHHHHHH----HTTCHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH----CCEEECH-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 62169998899998799999999997----9868718-------99999998----740156689998763664133034
Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998492899984001457534479998991599999999986059987998476
Q 000505 1314 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1371 (1458)
Q Consensus 1314 I~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1371 (1458)
+...++.. + ... ..-.. +-+ | +-.-..|.-.|-+ .+.-..++.||-+
T Consensus 70 ~~~l~~~~-~----~~~-~~~~~-ild-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 70 MTRLVLHE-L----KNL-TQYNW-LLD-G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHHH-H----HHH-TTSCE-EEE-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHHH-H----HHH-HHCCC-CCC-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 45445554-4----212-10584-244-5--2100067887631-5753299997244
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.48 E-value=0.34 Score=21.54 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.48 E-value=0.3 Score=21.97 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.33 E-value=0.32 Score=21.80 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.30 E-value=0.72 Score=19.15 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999981589993689988707765899
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~ 651 (1458)
.+.|-|+.|+||||+++.+...+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~ 34 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGS 34 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999988866789999999999865699
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.38 Score=21.17 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=25.2
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 022116896189499998899998779999982167
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1224 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+|++++ .|=-.|+|+|+.++|||||++.|++..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.21 E-value=0.32 Score=21.80 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=88.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCCC-CCCCCCHHHHC-C-CCC-CCC
Q ss_conf 999988999987799999821677--99738999696179999788741308981677-77656577703-8-699-999
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE--PSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNL-D-PLE-QHS 1310 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LRs~isiIpQdp-~LF~gTIR~NL-d-p~~-~~s 1310 (1458)
-|||+|..|||||||+.+|+-.-. ...|++. +|..+......+..+.+++-+.-- +-+++ -+-|+ | |.. ++.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETT-EEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCC-EEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534023365-184698565888751886001123431598-389995278602269
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999849289998400145753447999899159999999998605998799---84767799999899999999
Q 000505 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV---LDEATASIDTATDNVIQQTI 1387 (1458)
Q Consensus 1311 DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILi---LDEaTsslD~~Td~~Iq~~I 1387 (1458)
. |...++..+... -.|-+.....-.+-++..-.|+. .+-|+|++ ||-+-+..+. +.+.|
T Consensus 86 ~-e~~~~l~~~D~a-----------vlVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~~~-----~l~ei 147 (276)
T d2bv3a2 86 I-EVERSMRVLDGA-----------IVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADLWL-----VIRTM 147 (276)
T ss_dssp T-THHHHHHHCCEE-----------EEEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCHHH-----HHHHH
T ss_pred H-HHHHHHHHHHHE-----------EEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCH-----HHHHH
T ss_conf 9-999999963005-----------77322567744669999999998-599979998644565431212-----68999
Q ss_pred HHHCC-CCEEEEEECCH----HHHHH--CCEEEEEEC---CEEEEECCHHHHHHCC
Q ss_conf 98649-94789972491----23410--298999949---8797845934786219
Q 000505 1388 REETS-RCTVITVAHRI----PTVID--NDLVLVLDE---GKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1388 ~~~~~-~~TVI~IAHRl----~ti~~--~DrVlvL~~---G~ivE~gsp~~Ll~~~ 1433 (1458)
++.++ ++..+.+-=.. .-+.| ..+.+.-++ ++..+..-|+++.+..
T Consensus 148 ~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~ 203 (276)
T d2bv3a2 148 QERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQA 203 (276)
T ss_dssp HHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHH
T ss_pred HHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHH
T ss_conf 99859971789833457875138850561089985588886540025856777777
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.15 E-value=0.49 Score=20.35 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=25.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0221168961894999988999987799999821
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1224 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
.+++-.+. -.|.-|.|+|++|+||||+...|.+
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999999-9999999980899998999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.13 E-value=0.37 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||.++|..|+|||||++.+..-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.10 E-value=0.33 Score=21.61 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89499998899998779999982167799738999696179999
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~ 1277 (1458)
+...+.+||+||+||||.+-=|...+--.+-+|.+=..|...++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g 53 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA 53 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99899998999998899999999999977990699960133420
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.33 Score=21.70 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----CCCCCCE-----EEECCEEC
Q ss_conf 49999889999877999998216-----7799738-----99969617
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV-----VEPSGGR-----ILIDGVDI 1273 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl-----~ep~~G~-----I~IDG~dI 1273 (1458)
-||.++|..|+|||||++.+..- +.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.84 E-value=0.43 Score=20.76 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
+|-|.|+-||||||+...|..-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.71 E-value=0.34 Score=21.58 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
+|.++|..||||||+.+.|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.70 E-value=0.46 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999987799999821677
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
.+-+.||+|+||||++.++.+-..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.64 E-value=0.41 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999815899936899887077658
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~~ 649 (1458)
++++|-|..||||||+++.|.-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.61 E-value=0.35 Score=21.50 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.54 E-value=0.39 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 189499998899998779999982
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALF 1256 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1458)
++.-||.++|++|+|||||++.+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 966899999999998899998873
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.53 E-value=0.38 Score=21.21 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
+.+.||.|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.51 E-value=0.37 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999988999987799999821677
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
-+.|.|-|.-||||||+++.|..-..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 81999989988859999999999873
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.51 E-value=0.35 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999988999987799999821
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.25 E-value=0.37 Score=21.33 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889999877999998216
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
||.++|..|+|||||++.+..-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.21 E-value=0.24 Score=22.65 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998158999368998870776589
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~ 650 (1458)
-+.+.||.|+||||+.+++..++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.38 Score=21.16 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8961894999988999987799999821677
Q 000505 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1230 ~~i~~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
+.+-.|++++|+|+.|+|||||+..+.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5645787556867999887899999999775
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.15 E-value=0.34 Score=21.52 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999988999987799999821-----67799738
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGGR 1265 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r-----l~ep~~G~ 1265 (1458)
||.++|..|+|||||++.+.. -++|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=83.12 E-value=0.56 Score=19.96 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50221168961894999988999987799999821
Q 000505 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1223 ~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
..+++-...+ .|.-+.|.|++|+||||+...|.+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.09 E-value=0.37 Score=21.29 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.06 E-value=0.35 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.04 E-value=0.25 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999981589993689988707765
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
-+.+.||.|+||||+.+++.+++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.38 Score=21.22 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999988999987799999821
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~r 1257 (1458)
=||.++|.+|+|||||++.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999999999799999999974
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.02 E-value=0.29 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
+.-.++++|+.|+|||||++.+.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 747999999999878999999844888
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.99 E-value=0.47 Score=20.51 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCC
Q ss_conf 949999815899936899887-0776589984
Q 000505 623 GSKVAVCGSVGSGKSSLLSSI-LGEIPRISGA 653 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~i-lGe~~~~~G~ 653 (1458)
--++.++|..|+|||||++-+ .++..|+-|-
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 47799998999988999998950982788886
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.97 E-value=0.24 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899998779999982167
Q 000505 1238 IGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.96 E-value=0.33 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=25.0
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 67850894999981589993689988707
Q 000505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1458)
Q Consensus 617 nl~i~~G~~~~i~G~~GsGKStLl~~ilG 645 (1458)
-+.+.+|+..+|.|+.|+|||+|+..+.-
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 14546776676006778885799999776
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.87 E-value=0.38 Score=21.18 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.||.++|.+|+|||||++.+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.74 E-value=0.45 Score=20.66 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
.+.|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.72 E-value=0.39 Score=21.14 Aligned_cols=176 Identities=24% Similarity=0.310 Sum_probs=97.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCC-CCCCCCCHHHHC-C-CCC-CCC
Q ss_conf 999988999987799999821677--9973899969617999978874130898167-777656577703-8-699-999
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVE--PSGGRILIDGVDISMIGLQDLRSRLSIIPQD-PMLFQGTVRTNL-D-PLE-QHS 1310 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LRs~isiIpQd-p~LF~gTIR~NL-d-p~~-~~s 1310 (1458)
-|+|+|..|+|||||+.+|+..-. ...|++. +|..+......+-...+++-+.- ++.++| .+-|+ | |.. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999849289998400145753447999899159999999998605998799---84767799999899999999
Q 000505 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV---LDEATASIDTATDNVIQQTI 1387 (1458)
Q Consensus 1311 DeeI~~aL~~~~L~~~i~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILi---LDEaTsslD~~Td~~Iq~~I 1387 (1458)
.|...++..+...= .|-+.-+....+-++.+-.++. .+.|.+++ +|.+ + |.. ..+ +.+
T Consensus 82 -~e~~~al~~~D~av-----------lvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~~l-~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADAAL-----------VAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--ALL-EDL 142 (267)
T ss_dssp -HHHHHHHHHCSEEE-----------EEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--HHH-HHH
T ss_pred -HHHHHHHCCCCCEE-----------EEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--HHH-HHH
T ss_conf -55654312467338-----------9842357742115788776554-044310133320222-2--101--234-468
Q ss_pred HHHCCCCEEEEEECC----HHHHHH--CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 986499478997249----123410--2989999498797845934786219
Q 000505 1388 REETSRCTVITVAHR----IPTVID--NDLVLVLDEGKVLEYDSPRQLLEDN 1433 (1458)
Q Consensus 1388 ~~~~~~~TVI~IAHR----l~ti~~--~DrVlvL~~G~ivE~gsp~~Ll~~~ 1433 (1458)
++.+..+.-+.+-.+ ...+.| ..+.+..++|.-.+..-|.++.+..
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~ 194 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERV 194 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHH
T ss_pred HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHHH
T ss_conf 8874658676860025883268762476548996189874540777789999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.34 Score=21.59 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.38 E-value=0.41 Score=20.99 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.|+|..|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.21 E-value=0.42 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.20 E-value=0.45 Score=20.64 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4999988999987799999821677997389996
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~ID 1269 (1458)
..|||.|.-||||||..+.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=0.43 Score=20.77 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.98 E-value=0.62 Score=19.60 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1894999988999987799999821677
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1260 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~e 1260 (1458)
+|.=.|||+|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.93 E-value=0.45 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=0.44 Score=20.74 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=81.75 E-value=0.48 Score=20.45 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89499998899998779999982167799738999696179999
Q 000505 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277 (1458)
Q Consensus 1234 ~GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~ 1277 (1458)
+-..+.+||+||+||||.+-=|...+.-.+-+|.+=..|...++
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g 51 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 51 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99799998999999899999999999977994799823213666
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.75 E-value=0.49 Score=20.41 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 949999889999877999998216
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.=||.++|+.|+|||||++.+..-
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 479999999998789999998448
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.64 E-value=0.47 Score=20.51 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=29.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
Q ss_conf 189499998899998779999982167------------79973899969
Q 000505 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV------------EPSGGRILIDG 1270 (1458)
Q Consensus 1233 ~~GekvgIVGrTGSGKSTLi~~L~rl~------------ep~~G~I~IDG 1270 (1458)
..+-|+||||...+|||||+++|.+-- +|.-|.+.+..
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 88737999789999899999999778987747899667038768996066
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.62 E-value=0.45 Score=20.66 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-++++|.+++|||||+..|+.+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~~ 27 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMDR 27 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 89999447999999999999985
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.61 E-value=0.9 Score=18.42 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=18.7
Q ss_pred EECCCEEEEECCCCCCHHHHH-HHHHCCC
Q ss_conf 618949999889999877999-9982167
Q 000505 1232 FPGEKKIGVVGRTGSGKSTLI-QALFRVV 1259 (1458)
Q Consensus 1232 i~~GekvgIVGrTGSGKSTLi-~~L~rl~ 1259 (1458)
+++|+.+-|+++||||||... .++.+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87599679981799885599999999975
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.58 E-value=0.46 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999981589993689988707765
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.-+.+.||.|+|||++.+++..+..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.56 E-value=0.9 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999981589993689988707765
Q 000505 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 622 ~G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
.+.-..+.|+.|+||+++...+..+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 985599889899888999999999984
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.56 E-value=0.46 Score=20.60 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.53 E-value=0.44 Score=20.75 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=0.47 Score=20.51 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.42 E-value=0.51 Score=20.28 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 949999889999877999998216779973
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ep~~G 1264 (1458)
...+-|.|++|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.38 E-value=0.54 Score=20.06 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998158999368998870776
Q 000505 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 624 ~~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
..+.+.|+.||||||+.+.|.-.+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.5 Score=20.33 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999889999877999998216
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
=||.++|..|+|||||++.+..-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.11 E-value=0.49 Score=20.39 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.+||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.02 E-value=0.49 Score=20.38 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998158999368998870776
Q 000505 626 VAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 626 ~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
++++|.+.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.98 E-value=0.79 Score=18.83 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=25.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 02211689618949999889999877999998216
Q 000505 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258 (1458)
Q Consensus 1224 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl 1258 (1458)
.+++ ++-.-.|.-|.|.|++|+||||+...|.+-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.97 E-value=0.53 Score=20.11 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998158999368998870776
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~ 647 (1458)
-++++|.+++|||||+..|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89999588980999999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.86 Score=18.55 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99879984767799999899999999986499478997249123410
Q 000505 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1408 (1458)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~ 1408 (1458)
+.+|+++||+=. ++.+....+.+.+.+...++..|.++++++-+..
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~ 160 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 160 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
T ss_conf 987999978110-8999999999998568988699997388563676
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=0.5 Score=20.30 Aligned_cols=21 Identities=38% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.79 E-value=0.61 Score=19.69 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 999981589993689988707765899848
Q 000505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1458)
Q Consensus 625 ~~~i~G~~GsGKStLl~~ilGe~~~~~G~v 654 (1458)
.++|-|..|+||||+++.+...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999988877889999999999873468856
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.75 E-value=0.55 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998899998779999982167
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFRVV 1259 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~rl~ 1259 (1458)
..|-+.||+|+|||++++++.+-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.53 E-value=0.34 Score=21.56 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999987799999821
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r 1257 (1458)
||.++|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=80.48 E-value=0.64 Score=19.50 Aligned_cols=41 Identities=29% Similarity=0.273 Sum_probs=25.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 94999988999987799999821677997389996961799
Q 000505 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275 (1458)
Q Consensus 1235 GekvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~ 1275 (1458)
+..+.+||+||+||||.+-=|...+.-.+-++.+=..|...
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R 50 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 50 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 86899989999988999999999999779927999544346
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.42 E-value=0.53 Score=20.11 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 4999988999987799999821-----6779973
Q 000505 1236 KKIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1458)
Q Consensus 1236 ekvgIVGrTGSGKSTLi~~L~r-----l~ep~~G 1264 (1458)
=||.++|.+|+|||||++.+.. -++|+.|
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 7999999899598999999970988854576312
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.34 E-value=0.61 Score=19.70 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9999889999877999998216779973899969617
Q 000505 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1273 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI 1273 (1458)
.+-+.||.|+||||+..++..-+.... +.++|.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 489879999738899999985038885--33257442
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.23 E-value=0.55 Score=20.03 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999988999987799999821-----6779973
Q 000505 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1458)
Q Consensus 1237 kvgIVGrTGSGKSTLi~~L~r-----l~ep~~G 1264 (1458)
||.++|..|+|||||++.+.. -++|+.|
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999899588999999972999865477534
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.09 E-value=0.56 Score=19.96 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999981589993689988707765
Q 000505 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1458)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilGe~~ 648 (1458)
...+.++||+|+|||.|.+.|...+.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 65899977875006999999986336
|