Citrus Sinensis ID: 000530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440
MHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKSSSSSQSHNNGQSCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRTPIHEPLCDDNDSRVKSFPGDHSTDSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQESTSTTIDAASSAVGVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccc
ccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccHHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEcccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHccccccHHccccccccccccccccccccccEccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEccccccccccccccccc
mhatvpsggrspkpmngptstsqlkpgsdgaqnsasfpsqvkgkkrergdqssepvkrersskmedgnsghsrtetNLKTEIAKITekgglvdydGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHkgkigdagsprdgdkSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEmdarprlpevphsgnrqtgasTEVAIKSLvtqpassktgavklcqgdaptksafsspvsvksaplpasgstdakdgqprnaasatgttdlpstpakdeksssssqshnngqscvgdhaktgglsgkedarssATVSMTLNKIsvgssrsrksvngypsstpagvqretvssknatlhrnsasdrpsqpsltcekaldvpvveganpkiivkipnrgrspaqnssggsvedtsvtnsrasspvlpekqnqFDRNFKEKNDALRADIssnmnsepwqsnvnkdaaacpdegsgspavlpdeqgsktgdnCRKVVEDlednslppgyefkdvklhessFSSMNALIESCVKYseanvsapagddiGMNLLASVAagemsksdvvspvgspprtpiheplcddndsrvksfpgdhstdstddehekqgidrnlwaknsdsnqdkpaggltghistspvdlqqsgdpcqentenSKEIIVaeetpdgagrnpeedkagfrvdadgapdgkqrisgplstedkvsestrgveteavegsasnqslefdgenkkgvseglnsgvkreqkpspitthsesvkgkdgellhtsgsgedmplknvdevkvekadevdskshvnqteeqnsewksnapmiredrvvphlgsaeneekgngkvdhrenlegkevkeelcagpalpevSTALRAQETGQLVRTGAVKLTIsegdkaqeststtidaassavgvsdmeakvefdlnegfdgddgkygessnfivpgcsgvvqqlvsplplpvtsvssslpssvtvaaaakgpfvppedllrskvelgwkgsaatsafrpaeprkilemplgatsisvpdstsgklgrplldidlnvpdervLEDLasrssvqdtvtasdhtnnrdgsrcevmgsksvrgsvgldldlnRAEELIdignystsngnkidvpvqpgtssggllngevnvrrdfdlndgpvlddcsaepsvfpqhprnvsqapvsglrlssadtvnfsswfprgntystiavpsvlpdrgeqpfpiiapcapqrmlvpstsgspfgpdvfrgpvlssspavpfpsapfqypvfpfgtsfplpsatfsggtttyvdsssggrfcfpavnsqlmgpagavpshfprpyvvslpdgsnsassessWKRSRQsldlnagpgvpdiegrdetsplvprqlsvagsqvlTEDQARMYQQMAgghfkrkepeggwdgykrpswq
mhatvpsggrspkpmngPTSTSQlkpgsdgaqnsasfpsqvkgkkrergdqssepvkrersskmedgnsghsrtetnlkteiakitekgglvdydgVEKLVQLMVperndkkiDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKgkigdagsprdgdKSVEEFLLILLRALDKLPVNLNALQMCNIGKSvnhlrthknveiqkkarslVDTWKKRVEaemdarprlpevphsgnrqtgaSTEVAIKSLVtqpassktgAVKLCQGDaptksafsspvsvksaplpasgstdakdgqprnaasatgttdlpstpakdeksssssqshnngqscvgdhaKTGGLSGKEDARSSATVSMTLnkisvgssrsrksvngypsstpagvqretVSSKNATLHrnsasdrpsqpsltcekaldvpvveganpkiivkipnrgrspaqnssggsvedtsvtnsrasspvlpekqnqfdRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSpavlpdeqgsktgdNCRKVVEDlednslppgyEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRtpiheplcddndsrVKSFPGdhstdstddehekQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIvaeetpdgagrnpeEDKAgfrvdadgapdgkqrisgplstedkvsestrgveteavegsasnqslefdgenKKGVSEGlnsgvkreqkpspitthsesvkgkdgellhtsgsgedmplknVDEVKVEKadevdskshvnqteeqnsewksnapmiREDRVVPHLgsaeneekgngkvdhrenLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTisegdkaqeststtidaassavgvsdMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWkgsaatsafrpaeprKILEmplgatsisvpdstsgklgrplldidlNVPDERVLEDlasrssvqdtvtasdhtnnrdgsrcevmgsksvrgsvgldlDLNRAEELIDIgnystsngnkidVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAgghfkrkepeggwdgykrpswq
MHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKsssssqshnngqsCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRTPIHEPLCDDNDSRVKSFPGDHSTDSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNvdevkvekadevdskSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQEststtidaassaVGVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGvvqqlvsplplpvtsvssslpssvtvaaaaKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGpvlssspavpfpsapfQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGsnsassesswkrsrqsLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ
*********************************************************************************IAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKI************VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTW**********************************************************************************************************************************************************************************************************LDVPVVEGANPKIIVK********************************************************************************************************************************NALIESCVKYSEAN********IGMNLL**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YGESSNFIVPGCSGVVQQLVSPLPLPV*******************************VELGW*******************************************I*************************************************GLDLDLNRAEELIDIGNY*************************VNVRRDFDL************************************DTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAP******************************FPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMG********************************************************************************************************
********************************************************************************EIAKITEKGGLVDYDGVEKLVQL************VCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVH******************EFLLILLRALDKLPVN****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**************************************************************************ETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKI*********DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDA****************************************************************CVGDHAKTG************TVSMTLNKIS***********************************************TCEKALDVPVVEGANPKIIVKIPNRG*****************************KQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAG**************PRTPIHEPLCDDNDSRVKSF****************GIDRNLWAKNSDSNQDKPAGGLTGHISTS****************NSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISG**************************QSLEFDGE*******************************KDGELLHTSGSGEDMPLKNVDEVKV***********************SNAPMIREDRVVPHLGS**********VDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISE*******************GVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLP***********VTVAAAAKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLA*****************RDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSL*******************LDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ
****************************************************************************NLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGK**********DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAE************************************************************************************************************************************************************************************************************NPKIIVKIPNR***********************************************************************************************************************SFSSMNALIESCVKYSEA****PAGDDIG*NL*****AG**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EAKVEFDLNEGFDGDDGK************S****QLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWK**************************************PLLDIDLNVPDERVLEDLAS************************************DL***RAEELIDIGNYSTSNGNKIDVPVQP*****************FD*NDGPVLDDCSAEP************************************TYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPD*S*******************AGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKSSSSSQSHNNGQSCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRTPIHEPLCDDNDSRVKSFPGDHSTDSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQESTSTTIDAASSAVGVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1440 2.2.26 [Sep-21-2011]
F4KFC7353 Probable mediator of RNA no no 0.039 0.161 0.368 0.0007
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1 Back     alignment and function desciption
 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 172 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 228
           EE L+ LL+ L+ + +   ALQ  +IG+ VN +R H +  +++ A+ LV  WK+ V+
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVD 197
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). May play a role in transcription elongation (By similarity).
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1440
359491606 1631 PREDICTED: uncharacterized protein LOC10 0.971 0.857 0.578 0.0
255540759 1651 conserved hypothetical protein [Ricinus 0.979 0.854 0.569 0.0
255540753 1712 DNA binding protein, putative [Ricinus c 0.970 0.816 0.569 0.0
147817646 1688 hypothetical protein VITISV_021504 [Viti 0.963 0.821 0.568 0.0
356507216 1701 PREDICTED: uncharacterized protein LOC10 0.958 0.811 0.535 0.0
356518993 1613 PREDICTED: uncharacterized protein LOC10 0.961 0.858 0.531 0.0
449441029 1606 PREDICTED: uncharacterized protein LOC10 0.956 0.857 0.514 0.0
449526349 1599 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.956 0.861 0.514 0.0
297819422 1613 hypothetical protein ARALYDRAFT_485166 [ 0.957 0.854 0.487 0.0
186510768 1613 BAH and TFIIS domain-containing protein 0.958 0.855 0.490 0.0
>gi|359491606|ref|XP_003634295.1| PREDICTED: uncharacterized protein LOC100248456 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1474 bits (3817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1493 (57%), Positives = 1039/1493 (69%), Gaps = 94/1493 (6%)

Query: 1    MHATVPSGGRSPKPMNGPTSTSQLKPGSDGA-QNSA-SFPSQVKGKKRERGDQSSEPVKR 58
            MHATV  GGRSPKPM+GPTSTSQ+KPGSD + QN A S PSQVKGKKRERGDQ SEP+KR
Sbjct: 180  MHATVQPGGRSPKPMSGPTSTSQIKPGSDSSTQNCATSLPSQVKGKKRERGDQGSEPIKR 239

Query: 59   ERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCR 118
            ER SK +DG+SGHSR E+  K+EIAKITE+GGLVD +GVE+LVQLM PER +KKIDL+ R
Sbjct: 240  ERPSKTDDGDSGHSRPESVWKSEIAKITERGGLVDSEGVERLVQLMQPERAEKKIDLIGR 299

Query: 119  SLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLIL 178
            S+LAGV+AAT+K+DCL  FVQLRGL V DEWLQE HKGKIGD  SP+D DKSVEEFLL+L
Sbjct: 300  SILAGVIAATEKYDCLGRFVQLRGLPVLDEWLQEAHKGKIGDGSSPKDSDKSVEEFLLVL 359

Query: 179  LRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMD------ 232
            LRALDKLPVNL ALQMCNIGKSVNHLR+HKN+EIQKKARSLVDTWKKRVEAEM+      
Sbjct: 360  LRALDKLPVNLQALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKS 419

Query: 233  ---------ARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSA 283
                     +RPRL EV H GNR +G S+E+A+KS VTQ +SSKT  VKL QG+   KS 
Sbjct: 420  GSSQAVAWSSRPRLSEVSHGGNRHSGGSSEIAMKSSVTQLSSSKTAPVKLVQGEI-AKSG 478

Query: 284  FSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKSSSSSQSHNNGQSC 343
             +S    KSA  PAS ST  KDGQ R  A A   +D P T  +DEKSSSSSQSHNN QSC
Sbjct: 479  SASQGFTKSATSPASVSTSLKDGQTR-VAGAGNASDPPLTTVRDEKSSSSSQSHNNSQSC 537

Query: 344  VGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKN 403
              DHAKT G SGKEDARSS  +SM+++K S G+SR RKSVNGYP    +GVQRET SS++
Sbjct: 538  SSDHAKTVGFSGKEDARSSTAMSMSVSKTSGGASRHRKSVNGYPGPAVSGVQRETGSSRS 597

Query: 404  ATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSV 463
            ++  RN AS++ SQ  LTC+KA DVP VEG + K+IVKIPNRGRSPAQ++SGGS ED S+
Sbjct: 598  SSFQRNPASEKVSQSGLTCDKAFDVPTVEGNSHKLIVKIPNRGRSPAQSASGGSFEDPSM 657

Query: 464  TNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSP 523
             NS+ASSPVL  K +Q DRN KEK+D  RA+ +S++N+E WQSN  KDA    DEG GSP
Sbjct: 658  VNSQASSPVLSGKHDQSDRNLKEKSDVYRANNTSDVNTESWQSNDFKDAMTGSDEGDGSP 717

Query: 524  AVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEAN 583
            A LPDE+ S+TGD+ RK+    +  S   G E K  KL E+SF+SMNALIESCVK  EAN
Sbjct: 718  ATLPDEERSRTGDDTRKI----KTASSSSGIEPKSGKLVEASFTSMNALIESCVK-CEAN 772

Query: 584  VSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPR-TPIHEPLCDDNDSRVKSFPGDHS 642
             S    DD+GMNLLASVAAGEM+K + VSP  SP R T + E     ND++ K    D  
Sbjct: 773  ASVSVVDDVGMNLLASVAAGEMAKRESVSPADSPLRNTAVIEDSSAGNDAKSKPTGDDIL 832

Query: 643  TDSTDDEH------EKQGIDRNLWAKNSDSNQDKPAGGLTG-----HISTSPVDLQQSGD 691
             + +   +      EKQG     WAK  D     P   LT      HI+++ +DL ++ +
Sbjct: 833  REQSQSNYGPTGDTEKQG----FWAK--DGLHHLPKHALTNRENNEHINSTSIDLVRTSE 886

Query: 692  PCQENTENSKEIIVAEE------------TPDGAGRNPEEDKAGFR-VDADGAPDGKQRI 738
             C E    S E +V               + D  G+   E KA    V+ DG PD K ++
Sbjct: 887  LCSEINRKSDETVVGASVTASPVSTTEKGSDDEQGKQLHEKKAAVDGVNVDGIPDTKPKV 946

Query: 739  SGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITT 798
            S     EDKV++    VE +  E  +S  SLE DGE K  V+EGLN+    EQKP     
Sbjct: 947  SSSSLAEDKVNDVLPCVELK--EEQSSYASLEPDGE-KNNVNEGLNT----EQKPPASMI 999

Query: 799  HSESVKGKDGELLHTSGSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQNSEWKSNAPM 858
             S+ VKG + E+   SGSG+D+  +NVD++K EKADE+   +H NQ EEQ  E K++A  
Sbjct: 1000 PSDFVKGTEKEVPLPSGSGKDLVPENVDQMKAEKADEICVSNHANQMEEQRIEPKNHAST 1059

Query: 859  IREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLV 918
              EDR                +    ENL  KEV E   +G A  + S      E  QLV
Sbjct: 1060 AAEDR----------------RELMEENLGNKEVLENCSSGQAPYKQSPTFPVLEVEQLV 1103

Query: 919  RTGAVKLTISEGDKAQESTSTTIDAAS-SAVGVSDMEAKVEFDLNEGFDGDDGKYGESSN 977
            R    KL   E D+ +E  STT DA+S SA G SD++ K+EFDLNEGF+ DDGK+GE  N
Sbjct: 1104 RPRGSKLPGDEADETEECASTTADASSFSATGGSDVDGKLEFDLNEGFNADDGKFGEPVN 1163

Query: 978  FIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWKGS 1037
               PGCS  V  L+SPLP PV+S+SS LP+S+TV AAAKGPFVPP+DLLRSK ELGWKGS
Sbjct: 1164 VGTPGCSAAV-HLISPLPFPVSSMSSGLPASITVTAAAKGPFVPPDDLLRSKGELGWKGS 1222

Query: 1038 AATSAFRPAEPRKILEMPLGATSISVP-DSTSGKLGRPLLDIDLNVPDERVLEDLASRSS 1096
            AATSAFRPAEPRK LEMPL A  ++VP D+TSGK  RPLLD DLN+PDER+LED+ SRSS
Sbjct: 1223 AATSAFRPAEPRKTLEMPLNA--LNVPSDATSGKQNRPLLDFDLNMPDERILEDMTSRSS 1280

Query: 1097 VQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVP 1156
             Q+T +  D  ++RD +    MGS  +R S GLDLDLN+++E+ D+G +S SN +++ VP
Sbjct: 1281 AQETSSTCDLVSSRDLAHDRPMGSAPIRCSGGLDLDLNQSDEVTDMGQHSASNSHRLVVP 1340

Query: 1157 VQP--GTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRN--VSQAPVSGLRL 1212
            + P   +SS G  NGEV VRRDFDLN+GPVLD+ SAEPS F QH R+   SQ PV+ LR+
Sbjct: 1341 LLPVKSSSSVGFPNGEVVVRRDFDLNNGPVLDEVSAEPSSFSQHARSSMASQPPVACLRM 1400

Query: 1213 SSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDV 1272
            ++ D  NFSSWFP  N YS + +PS++PDR EQPFPI+A   PQR++  ST G+PF PDV
Sbjct: 1401 NNTDIGNFSSWFPPANNYSAVTIPSIMPDR-EQPFPIVATNGPQRIMGLSTGGTPFNPDV 1459

Query: 1273 FRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNS 1332
            +RGPVLSSSPAVPFPS PFQYPVFPFGT+FPLP ATFSG +T++ DSSS GR CFPAVNS
Sbjct: 1460 YRGPVLSSSPAVPFPSTPFQYPVFPFGTNFPLPPATFSGSSTSFTDSSSAGRLCFPAVNS 1519

Query: 1333 QLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDET-S 1391
            QL+GPAG VPSH+PRPYVV+L DGSNS   ES+ +  RQ LDLNAGPG P+I+GR+E+  
Sbjct: 1520 QLIGPAGTVPSHYPRPYVVNLSDGSNSGGLESNRRWGRQGLDLNAGPGGPEIDGREESVV 1579

Query: 1392 PLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWD----GYKRPSWQ 1440
             L  RQLSVA SQ L  +QARMY   AGG  KRKEPEGGWD     YK+ SWQ
Sbjct: 1580 SLASRQLSVASSQALAGEQARMY-HAAGGVLKRKEPEGGWDTERFSYKQSSWQ 1631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540759|ref|XP_002511444.1| conserved hypothetical protein [Ricinus communis] gi|223550559|gb|EEF52046.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255540753|ref|XP_002511441.1| DNA binding protein, putative [Ricinus communis] gi|223550556|gb|EEF52043.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147817646|emb|CAN60153.1| hypothetical protein VITISV_021504 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507216|ref|XP_003522365.1| PREDICTED: uncharacterized protein LOC100780436 [Glycine max] Back     alignment and taxonomy information
>gi|356518993|ref|XP_003528159.1| PREDICTED: uncharacterized protein LOC100788512 [Glycine max] Back     alignment and taxonomy information
>gi|449441029|ref|XP_004138286.1| PREDICTED: uncharacterized protein LOC101210258 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526349|ref|XP_004170176.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224819 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297819422|ref|XP_002877594.1| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata] gi|297323432|gb|EFH53853.1| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186510768|ref|NP_190388.2| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|186510770|ref|NP_850669.2| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|332644839|gb|AEE78360.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|332644840|gb|AEE78361.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1440
TAIR|locus:20979151613 SUO "'shuttle' in chinese" [Ar 0.972 0.867 0.460 6.3e-298
TAIR|locus:20979251611 AT3G48060 [Arabidopsis thalian 0.965 0.863 0.449 7.8e-284
TAIR|locus:21359071000 AT4G24200 [Arabidopsis thalian 0.126 0.182 0.316 3.7e-13
DICTYBASE|DDB_G0268640784 DDB_G0268640 "unknown" [Dictyo 0.436 0.801 0.196 1e-07
FB|FBgn00362031514 Muc68D "Mucin 68D" [Drosophila 0.437 0.416 0.184 1.1e-07
UNIPROTKB|Q9NZW41301 DSPP "Dentin sialophosphoprote 0.413 0.457 0.183 1.4e-06
WB|WBGene00019435 2232 K06A9.1 [Caenorhabditis elegan 0.387 0.25 0.191 1.3e-05
TAIR|locus:504955937734 AT2G22795 "AT2G22795" [Arabido 0.342 0.671 0.196 2.6e-05
DICTYBASE|DDB_G0271670374 DDB_G0271670 [Dictyostelium di 0.204 0.788 0.162 3.1e-05
FB|FBgn00361813135 Muc68Ca "Mucin 68Ca" [Drosophi 0.275 0.126 0.216 3.7e-05
TAIR|locus:2097915 SUO "'shuttle' in chinese" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2860 (1011.8 bits), Expect = 6.3e-298, P = 6.3e-298
 Identities = 676/1467 (46%), Positives = 862/1467 (58%)

Query:     1 MHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRER 60
             MH T+  GGRSPK MN PT TSQ K   DG QNS SF SQ KG+KRER D  SE VKRER
Sbjct:   187 MHTTLQQGGRSPKSMNSPT-TSQPK---DGIQNSNSFLSQGKGRKRERMDHGSESVKRER 242

Query:    61 SSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSL 120
             SS+++D  SG  RTE+ LK+EI K TEKGGLVD +GVEKLVQLM+PERN+KKIDLV R++
Sbjct:   243 SSRVDDSGSGPLRTESGLKSEILKFTEKGGLVDSEGVEKLVQLMLPERNEKKIDLVGRAI 302

Query:   121 LAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLR 180
             LAGVVAATDKFDCL+ FVQLRGL VFDEWLQEVHKGK+GD GSP+D D+ V++FLL+LLR
Sbjct:   303 LAGVVAATDKFDCLSRFVQLRGLPVFDEWLQEVHKGKVGDGGSPKDSDRLVDDFLLVLLR 362

Query:   181 ALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARP----- 235
             ALDKLPVNLNALQ CNIGKSVNHLR+HKN EI KKARSLVDTWKKRVEAEMDA+      
Sbjct:   363 ALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSLVDTWKKRVEAEMDAKSGSNQG 422

Query:   236 -RLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAP 294
                P     G R +G S E A K+  +   +SK+ +VK  Q +   K   +SP S +SAP
Sbjct:   423 VSWPGRLSHGGRHSGGSAE-ANKTSSSHLHASKSVSVKQ-QVENNLKCVATSPGSTRSAP 480

Query:   295 LPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKXXXXXXXXXXXXXCVGDHAKTGGLS 354
              P SG   +KDGQ RNA  A G +++ +   KDEK             C  +HAKTG L 
Sbjct:   481 SPGSGGNVSKDGQQRNAG-AGGVSEVLAA-VKDEKSSSSSQSHNNSQSCSSEHAKTGNLC 538

Query:   355 GKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDR 414
             GKEDARSS T   TL K S GSSR RKS N +  S+ +   R    S++ + HRN  S++
Sbjct:   539 GKEDARSS-TAGSTLKKCSGGSSRHRKSNNVFQGSSSSASPRGAGLSRSFSSHRNVPSEK 597

Query:   415 PSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLP 474
              SQ SLT EK L+VP+ EG+  K+IVK+PNRGRSPAQ+ SGGS+ED +  NSR SSPV  
Sbjct:   598 ISQSSLTSEKTLEVPLTEGSGNKLIVKLPNRGRSPAQSVSGGSLEDPAPVNSRVSSPVHA 657

Query:   475 EKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKT 534
              KQ   D N +EKN + R ++SS +N+E WQSN  KD      E +GSP V  DE+G   
Sbjct:   658 VKQELCDNNGREKNHSYRPNVSSVLNAESWQSNELKDILTGSQEAAGSPLVAGDERGGDL 717

Query:   535 GDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGM 594
              D+ +        +SL  G EFK  + H  + SSMNALIESCV+YSE N S    DD+GM
Sbjct:   718 KDSDKASGNVKGTSSL--GNEFKSGERHGGTLSSMNALIESCVRYSETNASLAGSDDVGM 775

Query:   595 NLLASVAAGEMSKSDVVSP-VGSPPRTPIHEPLCDDNDSRVKSFPG----DHST--DSTD 647
             NLLASVAA EMSKS V SP V  PP + ++E     N++++ +  G     H     S  
Sbjct:   776 NLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNNTKLMASDGLPHEQHQAVCTSVS 835

Query:   648 DEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAE 707
              E  +Q +  +     S+   +   G      ++   DLQ+  D C E+ +NS  ++ + 
Sbjct:   836 TEQGEQHVSSSGTQLESEIKNESKTGDRDKSSNSDTEDLQRLVDQCLESNDNSDGVVASP 895

Query:   708 ETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLS-TEDKVSESTRGVETEAVEGSASN 766
               P  A +    +K     D+    D K  +      T D        + TE  + S   
Sbjct:   896 ALPTKAVK----EKILNDSDSGELKDIKTDVKSEADCTSDSTKRVASSMLTECRDVSKKV 951

Query:   767 QSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLXXXX 826
              S+  +    +GV +      K+E+KP P    SE VK  + ++  +SG   DM      
Sbjct:   952 DSVAVEQTPLEGVDDD-----KKEEKP-PTALSSELVKKVEEDVPVSSGISRDMD-AVSI 1004

Query:   827 XXXXXXXXXXXSKSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRE- 885
                        + +H++Q + +  +   +  +      +    +  +     GKV+  E 
Sbjct:  1005 GRPITEMVNNVAFNHMDQKDVKKIKQDCDTSV----GAIKDTSAGLDSSVTKGKVEPVEG 1060

Query:   886 NLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQEXXXXXXXXXX 945
             NLE  EVKE      A P +S     +E   L R    K + ++GD+A E          
Sbjct:  1061 NLENSEVKERYSGLRATPGLSP----KEAEDLERPNGPKTSDADGDEAGECTSAARDASS 1116

Query:   946 XXVGVS---DMEAKVEFDLNEGFDGDDGKYGESSNFIVPG-CSGXXXXXXXXXXXXXXXX 1001
                  S   +M+A+VEFDLNEGFDGDD K+G+S+NF      +                 
Sbjct:  1117 VSAAASAGSEMDARVEFDLNEGFDGDDAKHGDSNNFSGSVFLTPTPLQPVKTLPFPVAPV 1176

Query:  1002 XXXXXXXXXXXXXXKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSI 1061
                           KGPFVPPEDLLR+K  +GW+GSAATSAFRPAEPRK  ++ L   + 
Sbjct:  1177 SSGTRASITVAAAAKGPFVPPEDLLRNKGAVGWRGSAATSAFRPAEPRKPQDVLLSINNT 1236

Query:  1062 SVPD-STS-GKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMG 1119
             S  D STS GK  R  LD DLNVPDERVLEDLAS+ S   T   SD TN+ D  R  VMG
Sbjct:  1237 STSDASTSAGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSGVMG 1296

Query:  1120 SKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGT--SSGGLLNGEVNVRRDF 1177
             S     S GLDLDLN+ ++  D+ +Y+ ++ +++D   Q     S+GG        RRDF
Sbjct:  1297 SALDHSSGGLDLDLNKVDDSTDMISYTMNSSHRLDSSFQQVKLPSTGG--------RRDF 1348

Query:  1178 DLNDGPVLDDCSAEPS-VFPQHPRN--VSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIA 1234
             DLNDGPV DD + EPS V  QH R+   SQ  +SG+R++  +  +FS+WFP  N YS ++
Sbjct:  1349 DLNDGPVGDDAAVEPSMVLNQHSRSGLPSQPSLSGIRVNGENMASFSTWFPAANAYSAVS 1408

Query:  1235 VPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGXXXXXXXXXXXXXXXXQYP 1294
             +P ++P+RG+QPFP+IA   PQRML P+T  S F P+ +RG                QYP
Sbjct:  1409 MPPIMPERGDQPFPMIATRGPQRMLGPTTGVSSFTPEGYRGPVLSSSPAMPFQSTTFQYP 1468

Query:  1295 VFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLP 1354
             VFPFG SFP+ SA F G +T ++DSSS GR CFP VNSQ++GP   VPS++PRPY+V LP
Sbjct:  1469 VFPFGNSFPVTSANFPGASTAHMDSSSSGRACFPGVNSQILGPGVPVPSNYPRPYIVGLP 1528

Query:  1355 DGXXXXXXXXXXXX-XXXXLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARM 1413
             +G                 LDLN+GPG  + EGRDE S LV RQLS + S  L EDQARM
Sbjct:  1529 NGGSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRDE-STLVARQLSSSASLPLKEDQARM 1587

Query:  1414 YQQMAGGHFKRKEPEGGWDGYKRPSWQ 1440
             YQ M+GG  KRKEPEGGWDGY++ SWQ
Sbjct:  1588 YQ-MSGGVLKRKEPEGGWDGYRQSSWQ 1613
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=IEA;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA
GO:0031053 "primary miRNA processing" evidence=IMP
GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA
TAIR|locus:2097925 AT3G48060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135907 AT4G24200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268640 DDB_G0268640 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00019435 K06A9.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0036181 Muc68Ca "Mucin 68Ca" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016144001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (1582 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1440
smart0050975 smart00509, TFS2N, Domain in the N-terminus of tra 2e-18
cd0018376 cd00183, TFIIS_I, N-terminal domain (domain I) of 8e-18
pfam0871151 pfam08711, Med26, TFIIS helical bundle-like domain 1e-14
TIGR01385299 TIGR01385, TFSII, transcription elongation factor 4e-06
>gnl|CDD|197766 smart00509, TFS2N, Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information 
 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 150 LQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKN 209
           L    K     A + +          L +L+ L KLP+ ++ L+   IGK VN LR HKN
Sbjct: 1   LLRAAKKLDKVANNGK-----EVSRCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKN 55

Query: 210 VEIQKKARSLVDTWKKRVEA 229
            EI+K A+ L+ +WKK V +
Sbjct: 56  EEIRKLAKKLIKSWKKLVYS 75

Length = 75
>gnl|CDD|238107 cd00183, TFIIS_I, N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain Back     alignment and domain information
>gnl|CDD|233390 TIGR01385, TFSII, transcription elongation factor S-II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1440
smart0050975 TFS2N Domain in the N-terminus of transcription el 99.4
cd0018376 TFIIS_I N-terminal domain (domain I) of transcript 99.36
KOG1886464 consensus BAH domain proteins [Transcription] 99.23
TIGR01385299 TFSII transcription elongation factor S-II. This m 99.21
PF0871153 Med26: TFIIS helical bundle-like domain; InterPro: 99.17
KOG1105296 consensus Transcription elongation factor TFIIS/Co 98.75
PLN029761713 amine oxidase 97.5
KOG1793417 consensus Uncharacterized conserved protein [Funct 96.57
KOG2821433 consensus RNA polymerase II transcription elongati 94.67
PF11467106 LEDGF: Lens epithelium-derived growth factor (LEDG 93.65
COG5139397 Uncharacterized conserved protein [Function unknow 88.43
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information 
Probab=99.40  E-value=1.9e-13  Score=125.82  Aligned_cols=58  Identities=45%  Similarity=0.652  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 000530          171 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE  228 (1440)
Q Consensus       171 ~ee~lLeLLraLkkLPVTvelLksT~IGKtVnkLRKH~neEI~kLAk~LVkkWKKlVd  228 (1440)
                      .++.|+++|++|+.+|||+++|+.|+||+.||+||||.|++|+++|+.||++||++|+
T Consensus        17 ~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK~~v~   74 (75)
T smart00509       17 EVSRCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVY   74 (75)
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999999999999999999999999985

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>KOG1886 consensus BAH domain proteins [Transcription] Back     alignment and domain information
>TIGR01385 TFSII transcription elongation factor S-II Back     alignment and domain information
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription Back     alignment and domain information
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription] Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>KOG1793 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2821 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A [Transcription] Back     alignment and domain information
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis Back     alignment and domain information
>COG5139 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1440
3nfq_A170 Transcription factor IWS1; SPN1, RNA polymerase II 2e-19
2xpp_A145 IWS1, ECU08_0440; transcription, elongation, histo 1e-18
1wjt_A103 Transcription elongation factor S-II protein 3; fo 2e-16
1pqv_S309 STP-alpha, transcription elongation factor S-II, D 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170 Back     alignment and structure
 Score = 86.3 bits (213), Expect = 2e-19
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 75  ETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCL 134
           E  L  +I ++ ++  +         +   +   +   I +    LL  VV+   K +  
Sbjct: 11  EQYLDEKILRLKDEMNIA-AQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLA 69

Query: 135 NWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQM 194
           +  +    L     WL+ +            DG     E    L  AL+ LPV    L+ 
Sbjct: 70  DTILDNNLLQSVRIWLEPLP-----------DGSLPSFEIQKSLFAALNDLPVKTEHLKE 118

Query: 195 CNIGKSVNHLRTHKNV--EIQKKARSLVDTWKKRV 227
             +G+ V      K V  ++ + A  L+  W + +
Sbjct: 119 SGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPI 153
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145 Back     alignment and structure
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1 Length = 103 Back     alignment and structure
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Length = 309 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1440
d1eo0a_77 a.48.3.1 (A:) Transcription elongation factor TFII 4e-17
d1wjta_103 a.48.3.1 (A:) Transcription elongation factor S-II 2e-16
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77 Back     information, alignment and structure

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 166 DGDKSVEEFLLILLRALDK-LPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWK 224
           + +KS +  +L +L  LDK        L+   +G  VN  +   NVEI K  + ++ +WK
Sbjct: 14  EKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73

Query: 225 KRV 227
             +
Sbjct: 74  DAI 76
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1440
d1wjta_103 Transcription elongation factor S-II protein 3 {Mo 99.47
d1eo0a_77 Transcription elongation factor TFIIS N-domain {Ba 99.44
d2b4jc181 PC4 and SFRS1-interacting protein, PSIP1 {Human (H 96.06
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.9e-15  Score=110.74  Aligned_cols=61  Identities=30%  Similarity=0.485  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999831899858765205887422334588-8889999999999999998999750
Q 000530          172 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMD  232 (1440)
Q Consensus       172 ee~lLeLLraLkkLPITveiLksT~IGKtVNkLRKH-~neEI~kLAk~LVkkWKkiVe~Ek~  232 (1440)
                      .+.++++|+.|+.+|||+++|++|+||++||+|||| .+++|+.+|+.||++||++|+.+..
T Consensus        30 ~~~vl~~L~~L~~~~it~e~L~~T~IGk~Vn~LrK~~~~~~v~~lAk~Lv~~WK~~v~~~~~   91 (103)
T d1wjta_          30 TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRT   91 (103)
T ss_dssp             CSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSCC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999998749987999985780196999884699789999999999999999874026
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure