Citrus Sinensis ID: 000607

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------
MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPGT
ccccccccccccccccccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHccccCEEEEcHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHcccCEEEcccHHHHcccccccccEEEEECcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHcccccccccCEEEECcccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEEcccccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccccEEEEEcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccCEEEEEEEEEccccccccccccEEEEccccccHHHHcccccccccccEEEEEEEEcccEECcHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHccCEccccccccEEcCCcccccccccHHHccccccccccEEECcccccHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccEEccccCEEEEEEEEEccEEEEEEECcccHHHHHHHHHHHHHHHHHHHcccc
******************LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG********QNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR******DYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSH*SLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEK************AEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS*************SFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDD*****RKI*VTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKS*RAS****
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MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPGT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Endoribonuclease Dicer homolog 2 Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing.probableQ3EBC8
Endoribonuclease Dicer homolog 2a Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs.probableQ10HL3
Endoribonuclease Dicer homolog 2b Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs.probableQ69LX2

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4A2P, chain A
Confidence level:very confident
Coverage over the Query: 22-421,450-456,468-525
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Template: 4A2W, chain A
Confidence level:very confident
Coverage over the Query: 22-422,449-547
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Template: 3C4B, chain A
Confidence level:very confident
Coverage over the Query: 1146-1259,1274-1376
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Template: 3QIR, chain A
Confidence level:confident
Coverage over the Query: 830-912
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Template: 3O2R, chain A
Confidence level:confident
Coverage over the Query: 1150-1244,1264-1313
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Template: 2KOU, chain A
Confidence level:confident
Coverage over the Query: 556-639
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Template: 2QVW, chain A
Confidence level:probable
Coverage over the Query: 1153-1252,1279-1396
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Template: 3C4B, chain A
Confidence level:probable
Coverage over the Query: 1146-1259,1274-1376
View the alignment between query and template
View the model in PyMOL