Citrus Sinensis ID: 000607
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1396 | 2.2.26 [Sep-21-2011] | |||||||
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | yes | no | 0.988 | 0.994 | 0.599 | 0.0 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | yes | no | 0.969 | 0.959 | 0.469 | 0.0 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | yes | no | 0.941 | 0.954 | 0.454 | 0.0 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | no | no | 0.959 | 0.808 | 0.333 | 0.0 | |
| Q5N870 | 1651 | Endoribonuclease Dicer ho | no | no | 0.961 | 0.812 | 0.318 | 0.0 | |
| P84634 | 1702 | Dicer-like protein 4 OS=A | no | no | 0.965 | 0.792 | 0.329 | 1e-179 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.924 | 0.788 | 0.321 | 1e-175 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | no | no | 0.520 | 0.380 | 0.344 | 1e-109 | |
| A2RAF3 | 1525 | Dicer-like protein 1 OS=A | yes | no | 0.857 | 0.784 | 0.268 | 1e-97 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | no | no | 0.515 | 0.382 | 0.325 | 2e-97 |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1686 bits (4366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1397 (59%), Positives = 1046/1397 (74%), Gaps = 17/1397 (1%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
M+ +ME++TT++VSA L FAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 3 MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYA 62
Query: 61 YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YL RKPSP VFLVP+VVLV QQAEA+KMHTDLKVG YWGDMGVDFWD +TWK+E+ K+
Sbjct: 63 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 122
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTP ILLD LR S+ L+MIKVLI+DECHHA GKH YACIM EFYH+ L +G SN+
Sbjct: 123 EVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNV 182
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS +K+K + YW+KIH+LETLMNSKVYTC +ESVL+ F+PFST FK+Y
Sbjct: 183 PRIFGMTASLVKTK-GENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
++ +IP L ++L + +KH SL LDLN + + + K++ +I+STL YCL +LG
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLG 301
Query: 301 VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK 360
+ LA KAA+++S ++D F W +L+ F ++KKF SDASQ + +P G WS+ + +
Sbjct: 302 ILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANING 361
Query: 361 FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
N ++GLLT K VCLIE+LL Y +E+IRCIIFV+RVITAIVL+SLL+E+LP WKTK
Sbjct: 362 -NAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTK 420
Query: 421 YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480
Y+AGNNSG+Q Q+RKKQNEIVE+FRRGLVN+IVATSILEEGLDVQSCNLVI FDP+ +C
Sbjct: 421 YVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNIC 480
Query: 481 SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM 540
SFIQSRGRARMQNSDYL+MV+SGD TQSRL YL+ G +MR+E L H+ +PC PL +
Sbjct: 481 SFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDS 540
Query: 541 YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC 600
E + VESTG TLSSSVSLIY YCSRLPSD YFKP P+F +NK+ G CTLYLP +C
Sbjct: 541 -DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSC 599
Query: 601 PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP 660
P++ V A+ N K LKQA CL+AC +LH++GAL+D+L+PD+VV + +QK YN E P
Sbjct: 600 PVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQP 659
Query: 661 IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
YFPPELV+Q + TYH YLI +K + + +++L R LE +I +F LE
Sbjct: 660 CYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLED 719
Query: 721 ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID 780
RG + V L ++G L +VL CRRFQITLFRV++DH+++ L E L+G LRD + +D
Sbjct: 720 HRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALD 779
Query: 781 YLLLPST----GQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHN 836
YLL+PST LIDW+ + +V + + NCST +RI+HTK G CTC + N
Sbjct: 780 YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHENCSTNGASRILHTKDGLFCTCVVQN 839
Query: 837 SLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGR 896
+LV TPHNG +YC GVL +LN NSL T+ N TY ++YEER+GIQL F EPLLNGR
Sbjct: 840 ALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNGR 899
Query: 897 RIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSL 956
IF + +YL +++K+KE + ELPPELC +I++PIS+ YS+TF+PS+M R++SL
Sbjct: 900 HIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIESL 959
Query: 957 LLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLF 1016
L+A NLK + V IPTIKVLEAITTKKC++ FHLESLETLGDSFLKYA QQLF
Sbjct: 960 LIAYNLKK-----SIPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLF 1014
Query: 1017 KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELN 1076
+ +HEGLLS KK+ +ISN LC+ GC+QKL GFIR E F+PK W++PG +S +Y L
Sbjct: 1015 QHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLV 1074
Query: 1077 DDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVP 1136
+D+L R IYV R+ +K K+VADVVE+LIGA+LS GGE L+F++ +GIKVDF
Sbjct: 1075 NDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTK 1134
Query: 1137 YQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAV 1196
QR + AE+LVNV ++ESLLNYSF D SLLVEALTHGSYM+PEIPRCYQRLEFLGD+V
Sbjct: 1135 IQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSV 1194
Query: 1197 LDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINI 1256
LDYLIT +LY+KYP LSPG LTDMRSASVNN+CYAL +VK LHKHIL+ASH L+K I+
Sbjct: 1195 LDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISR 1254
Query: 1257 TVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
TV FE+ SL STFGWES SFPK LGD+IESLAGAIFVDSG N+EVVF SI+PLL MI
Sbjct: 1255 TVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMI 1314
Query: 1317 TPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKT 1376
TPET++ HPVRELTE CQK F + S+ + TVEV+A F HT +DKK
Sbjct: 1315 TPETVKLHPVRELTELCQKWQFEL-----SKAKDFDSFTVEVKAKEMSFAHTAKASDKKM 1369
Query: 1377 AKKVACKEVLKSLRASF 1393
AKK+A KEVL L+ S
Sbjct: 1370 AKKLAYKEVLNLLKNSL 1386
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1223 bits (3165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/1396 (46%), Positives = 905/1396 (64%), Gaps = 43/1396 (3%)
Query: 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVV 79
AR YQLEALE A++ NT+ FLETGSGKTLIA+MLLR+YA+ +R+P S AVFLVP VV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 80 LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
LV QQA ++ HTDL V ++ G+MGVDFWD ATW+ ++ EVLVMTPQILLD LR S+F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN-LPRIFGMTASPIKSKVSSS 198
+L I +LI DECHHARG YACI EFYH L + S+ LPRIFGM+AS I SK +
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK-DLN 211
Query: 199 EQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELA 258
+Y ++I ++E LMNSKVYT SES LS +IPF++ K + I L+ ++ L
Sbjct: 212 PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNISSELHANILSCLN 271
Query: 259 MIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDF 318
+ KH +L+ L+ + E ++++SK++ T +YCL LGVWLA KAAE S E+
Sbjct: 272 RLNKKHIEALDR-KLHGSSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEVQSYEENSL 330
Query: 319 FAW-EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS--GLLTEKIVCL 375
W E LD E I+ + + + L ++ +G IG+ KF DS G+LT K+ CL
Sbjct: 331 SFWGETLDKNVEGFIRNYSEEVHRELSCFLKNG---HIGE--KFPADSQDGILTPKVHCL 385
Query: 376 IESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRK 435
I +LL+YR ++D+RCI+FVERVIT+IVL+ LLS + + W K++AG+ G+ QSRK
Sbjct: 386 IRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSI-HQMSGWNVKHMAGSRPGLLSQSRK 444
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
EIVE FR+G V++I+AT ILEEGLDV SCNLVI FDPS TVCSFIQSRGRARM+NSD
Sbjct: 445 NHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSD 504
Query: 496 YLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIA 555
YLL+V GD Q+ E +LASG MR+E L S+ C PL N + + +Y VEST I
Sbjct: 505 YLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVESTRAIV 564
Query: 556 TLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLK 615
TL+SSV LI+F+CS+LPSD YF P P+F I+K G CTL+LP + P+QTV +G LK
Sbjct: 565 TLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASGTCTLHLPKSSPVQTVNVEGEGSILK 624
Query: 616 QAACLEACKKLHQIGALTDNLL----------PDIVVEKHDAQKRGNEPYNAEHPIYFPP 665
+ CL+AC++LH IGALTD+LL PDIVVE E P YFP
Sbjct: 625 ETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVEN-----------KIEQPSYFPE 673
Query: 666 ELVNQSPQDTKI-TYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGR 724
E V+ +++ Y+CY I L + S +I+LA++ +L S+ +F L +
Sbjct: 674 EFVDNWRSFSRLGIYYCYKISL-EGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDN 732
Query: 725 LTVNLKHLGRIQLIPNQVLLCRRFQITLFR-VIMDHNLDKLNEILDGFELRDNLEIDYLL 783
+V +K++G I L QV++ RRFQ T+ +I D +L+ N I E++ + + YLL
Sbjct: 733 ASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIGVVYLL 792
Query: 784 LPSTGQLIDWKTVATVLFP-RDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTP 842
LP IDW ++ P + +KH +C + + ++ TK GP C C + NS+VCTP
Sbjct: 793 LPLVSGRIDWCSMKFSSSPIYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILKNSIVCTP 852
Query: 843 HNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQ 902
HN Y I+G L L+ANS +++G+V TYK +++ R+G+ L F+ +PLL G + V+
Sbjct: 853 HNNIFYVISGFLD-LDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVR 911
Query: 903 NYLSKCRQQKQKEPS-KISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVN 961
N+L C +K+KEP + S ELPPELCRIIM+P+S + + F++VPSIM R+Q +LL+V
Sbjct: 912 NFLHNCYSKKEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVK 971
Query: 962 LKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQN 1021
LK + L +Q +P +K+LEA+TTKKCQE+F ESLETLGDSFLKY ++ LF Y+
Sbjct: 972 LK-VQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRL 1030
Query: 1022 NHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLF 1081
HEG+L+ K+ +ISNAALC+L C L G+I E F+P+ WIIP + + S
Sbjct: 1031 QHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFL 1090
Query: 1082 NGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF-VNVPYQRQ 1140
+Y + +KSK +AD VEALIGA+LST GE + + +G+ ++F +P +R+
Sbjct: 1091 APNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVERK 1150
Query: 1141 FQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYL 1200
+ AE +NVR LE +L Y F D LL+EALTHGSY CYQRLEFLGDA+LD+L
Sbjct: 1151 ISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHL 1210
Query: 1201 ITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDS 1260
T Y Y+KYP +P LTD+RSASVNN+CYA ++VK GL+KHILH+S EL+++++ ++
Sbjct: 1211 FTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEE 1270
Query: 1261 FEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPET 1320
F + G ++GWE+ PK LGD+IES+AGAI++DS C++EVV++S++ LLEP+ TPET
Sbjct: 1271 FGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPET 1330
Query: 1321 MRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKV 1380
+ PV+ L E+C + F + + + G ++V V+A + T K AKK+
Sbjct: 1331 IEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 1389
Query: 1381 ACKEVLKSLRASFPGT 1396
A K VLK L A T
Sbjct: 1390 ASKAVLKDLIAGHKDT 1405
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1402 (45%), Positives = 885/1402 (63%), Gaps = 88/1402 (6%)
Query: 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVV 79
AR YQLEALE A++ NT+ FLETGSGKTLIA+MLLR+YA+ +R+P S AVFLVP VV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 80 LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
LV QQA ++ HTDL V ++ G+MGVDFWD ATW+ ++ EVLVMTPQILLD LR S+F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN-LPRIFGMTASPIKSKVSSS 198
+L I +LI DECHHARG YACI EFYH L + S+ LPRIFGM+AS I SK +
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK-DLN 211
Query: 199 EQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELA 258
+ +Y ++I ++E LMNSKVYT SES LS +IPF++ K + I L+ ++ L
Sbjct: 212 QHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNISSELHANILSCLN 271
Query: 259 MIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDF 318
+ KH +L+ L+ + E ++++SK++ T +YCL LGVWLA KAAE S E+
Sbjct: 272 RLTKKHIEALDR-KLHGSSLENAKQRISKLHRTFVYCLYNLGVWLAAKAAEVQSYEENSL 330
Query: 319 FAW-EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS--GLLTEKIVCL 375
W E LD E I+ + + + L ++ +G IG+ KF DS G+LT K+ CL
Sbjct: 331 SFWGETLDKNVEGFIRNYSEEVHRELSCFLKNG---HIGE--KFPADSQDGILTPKVHCL 385
Query: 376 IESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRK 435
I +LL+YR ++D+RCI+FV+RVIT+IVL+ LLS + + W K++AG+ G+ QSRK
Sbjct: 386 IRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSI-HQMSGWNVKHMAGSRPGLLSQSRK 444
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
EIVE FR+G V++I+AT ILEEGLDV SCNLVI FDPS TVCSFIQSRGRARM+NSD
Sbjct: 445 NHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSD 504
Query: 496 YLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIA 555
YLL+V GD + + +LASG MR+E L S+ C PL N + + +Y VES
Sbjct: 505 YLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVES----- 559
Query: 556 TLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLK 615
TP F I+K G CTL+LP + P+QTV +G LK
Sbjct: 560 ------------------------TPAFDIDKASGTCTLHLPKSSPVQTVNVEGEGSILK 595
Query: 616 QAACLEACKKLHQIGALTDNLL----------PDIVVEKHDAQKRGNEPYNAEHPIYFPP 665
+ CL+AC++LH IGALTD+LL PDIVVE E P YFP
Sbjct: 596 ETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVEN-----------KIEQPSYFPE 644
Query: 666 ELVNQSPQDTKI-TYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGR 724
E V+ +++ Y+CY I L + S +I+LA++ +L S+ +F L +
Sbjct: 645 EFVDNWRSFSRLGIYYCYKISL-EGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDN 703
Query: 725 LTVNLKHLGRIQLIPNQVLLCRRFQITLFR-VIMDHNLDKLNEILDGFELRDNLEIDYLL 783
+V +K++G I L QV++ RRFQ T+ +I D +L+ N I E++ + + YLL
Sbjct: 704 ASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIGVVYLL 763
Query: 784 LPSTGQLIDW---KTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVC 840
LP IDW K ++ ++ +N KH +C + + ++ TK GP C C + NS+VC
Sbjct: 764 LPLVSGRIDWCSMKFSSSPIYEANN--KHMTHCHSCRDIDLLQTKDGPFCRCILKNSIVC 821
Query: 841 TPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFH 900
TPHN Y I+G L L+ANS +++G+V TYK +++ R+G+ L F+ +PLL G +
Sbjct: 822 TPHNNIFYVISGFLD-LDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVK 880
Query: 901 VQNYLSKCRQQKQKEPS-KISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLA 959
V+N+L +K+KEP + S ELPPELCRIIM+P+S + + F++VPSIM R+Q +LL+
Sbjct: 881 VRNFLHNYYYKKEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLS 940
Query: 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTY 1019
V LK + L +Q +P +K+LEA+TTKKCQE+F ESLETLGDSFLKY ++ LF Y
Sbjct: 941 VKLK-VQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEY 999
Query: 1020 QNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPG---DNSGSYELN 1076
+ HEG+L+ K+ +ISNAALC+L C L G+I E F+P+ WIIP D G+ ++
Sbjct: 1000 RLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKI- 1058
Query: 1077 DDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF-VNV 1135
S +Y + +KSK +AD VEALIGA+LST GE + + +G+ ++F +
Sbjct: 1059 --SFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEI 1116
Query: 1136 PYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDA 1195
P +R+ + AE ++VR LE +L Y F D LL+EALTHGSY CYQRLEFLGDA
Sbjct: 1117 PVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDA 1176
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN 1255
+LD+L T Y Y+KYP +P LTD+RSASVNN+CYA ++VK GL+KHILH+S EL+++++
Sbjct: 1177 ILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMS 1236
Query: 1256 ITV-DSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEP 1314
+ SF G ++GWE+ PK LGD+IES+AGAI++DS C++EVV++S++ LLEP
Sbjct: 1237 YYLGQSFT----GPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEP 1292
Query: 1315 MITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADK 1374
+ TPET+ PV+ L E+C + F + + + G ++V V+A + T
Sbjct: 1293 LATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSAT-KSGPC 1350
Query: 1375 KTAKKVACKEVLKSLRASFPGT 1396
K AKK+A K VLK L A T
Sbjct: 1351 KLAKKLASKAVLKDLIAGHKDT 1372
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/1474 (33%), Positives = 768/1474 (52%), Gaps = 134/1474 (9%)
Query: 10 TTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPF 69
+T D AR YQL+ + A+++N IV+L TG GKT IA++L+ +L+RKPS
Sbjct: 18 STRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSRE 77
Query: 70 VAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQI 129
V +FL P + LV QQA I TD KV Y+G+ G + D W+ +M + EVLVMTPQI
Sbjct: 78 VCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGN-GKNSRDHQEWENDMREFEVLVMTPQI 136
Query: 130 LLDGLRLSYFKLNMIKVLILDECHHAR--GKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
LL LR + K+N I +LILDECHHA+ +H YA IM EFY+ PR+FGMT
Sbjct: 137 LLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYN---SNSVEKFPRVFGMT 193
Query: 188 ASPIKSKV--------------------------SSSEQDYWQKIHDLETLMNSKVYTCA 221
ASPI K S++ +Y + I+ LE L+++KV +
Sbjct: 194 ASPIIGKGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSVD 253
Query: 222 SESVLSNFIPFSTAKFKFYKYDEIPHA-LYTHLADELAMIELKHTRSLEN--LDLNEAQA 278
+E + S ++ + Y Y + H+ L T EL ++L+ R L D ++Q
Sbjct: 254 NEELES---VVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQK 310
Query: 279 ELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET--IIKKFG 336
+L K + +++ +++CL ELG + AL+AA T ++ D ++D G T +
Sbjct: 311 KL--KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHHYL 368
Query: 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVER 396
+ A+ L G+ D K L+ + K LI L Y E+++CI+FV+R
Sbjct: 369 NGATSILSRNKTDGSHAGSFDLEK--LEEPFFSNKFSVLINVLSRYGLQENMKCIVFVKR 426
Query: 397 VITAIVLQSLLSELLPRHCT--WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVA 454
+ A + ++L L C WK +++ G +SG + SR K + IV+ F G VN++VA
Sbjct: 427 ITVARAISNILQNL---KCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVA 483
Query: 455 TSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENY 514
TS+ EEGLD+Q+C LV+ FD TV SFIQSRGRARM S Y+++++ + + + L Y
Sbjct: 484 TSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGY 543
Query: 515 LASGNKMRKEVLSHASLPCSPLNNHMYG---EDFYHVESTGTIATLSSSVSLIYFYCSRL 571
+A + M +E+ S S N M+ E+ Y V++TG + + SVSL++ YC L
Sbjct: 544 IAGESIMNEEIDSRTS-------NDMFDCLEENIYQVDNTGASISTACSVSLLHCYCDNL 596
Query: 572 PSDGYFKPTPKF-HINKEMGI-CTLYLPNNCPIQTVIAQGNIKT--LKQAACLEACKKLH 627
P D +F P+P F +I+ GI C L LP N + Q + K+ ACL+AC KLH
Sbjct: 597 PRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLH 656
Query: 628 QIGALTDNLLPDIVVEKHDAQKRGNEPYNAE---------HPIYFPPELVNQSPQDTKIT 678
++GALTD LLP K+ N N H + P L P K+
Sbjct: 657 KLGALTDFLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHEMLIPAVL---KPSGLKLD 713
Query: 679 -------YHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLT-VNLK 730
Y+ I + + Y + ++ + E E+ + DL + RGR+ +K
Sbjct: 714 SLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAET----LQVDLHLARGRIVKAGIK 769
Query: 731 HLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID---YLLLPST 787
HLG+I +++L +FQ ++++D + + G ++ LEI+ YLLLP
Sbjct: 770 HLGKIAFEKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDV--TLEINSTFYLLLPIK 827
Query: 788 GQ------LIDWKTV----ATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNS 837
+ +IDW V ++ +F + + S+ + R++ G + S
Sbjct: 828 QKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLL---DGIFSKTDVVGS 884
Query: 838 LVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRR 897
+V +PHN + + G+L +NA ++ ++G+ TY +H++ER+ I+L +PLL ++
Sbjct: 885 VVFSPHNNIFFFVDGILDEINA---WSEHSGA--TYAEHFKERFRIELSHPEQPLLKAKQ 939
Query: 898 IFHVQNYL----SKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
IF+++N L + + + +E + ELPPELC + + S S + +PS+M+RL
Sbjct: 940 IFNLRNLLHNRLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRL 999
Query: 954 QSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQ 1013
++LL+A+ LK+++L + I +LEA+TT+KC E LE E LGD+FLKY +
Sbjct: 1000 ENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGR 1059
Query: 1014 QLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSG-- 1071
F TY+ EG L+ ++ +++N+ L +L +KL +IR + F+P + PG
Sbjct: 1060 HKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPGRPCKVV 1119
Query: 1072 ----------SYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLI 1121
+++ D+ N + K +ADVVE+LIGAFL GG
Sbjct: 1120 CNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFA 1179
Query: 1122 FLDRIGIKVDFVNVPYQRQFQVHAERL-----VNVRHLESLLNYSFRDPSLLVEALTHGS 1176
FL IGI VDF N R + L ++ LE L+ Y F+ LL++A H S
Sbjct: 1180 FLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPS 1239
Query: 1177 YMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVK 1236
+ CYQRLEFLGDAVL+Y+IT YLY+ YP + PG +TD+RS +V ND A ++V+
Sbjct: 1240 FS-QHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVE 1298
Query: 1237 HGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVD 1296
+HKH++ S+ L I+ + + KLS E + PKALGDI+ES GA+ +D
Sbjct: 1299 KSIHKHLIKDSNHLTSAIS-KFEMYVKLSNSEKDLLEE-PACPKALGDIVESCIGAVLLD 1356
Query: 1297 SGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTV 1356
SG N V++ + LL+P++T M +P+REL E CQ + F + P + G+ V V
Sbjct: 1357 SGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKV 1416
Query: 1357 EVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
EV ++ T + + K A+K A +E L L+
Sbjct: 1417 EVNIKSKIIICTAANRNSKAARKFAAQETLSKLK 1450
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1472 (31%), Positives = 724/1472 (49%), Gaps = 130/1472 (8%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLV 81
R YQL+ E A+++NTI L+TG+GKT+IA+ML++ + + R K + V +FL P V LV
Sbjct: 33 RRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLV 92
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
QQ E I++HTD +V +Y+G GVD W G W+E++SK++V+VMTPQ+ L LR ++ L
Sbjct: 93 TQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNAFLIL 152
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQD 201
+M+ ++I DECHHA G H Y IM EFYH+ + P +FGMTASP+ K SS D
Sbjct: 153 DMVSLMIFDECHHATGNHPYTRIMKEFYHK-----SEHKPSVFGMTASPVIRKGISSHLD 207
Query: 202 YWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMI- 260
+ +LE L+++K+YT + + +P +AK YD P + L++EL ++
Sbjct: 208 CEGQFCELENLLDAKIYTVSDREEIEFCVP--SAKEMCRYYDSKP-VCFEDLSEELGVLC 264
Query: 261 --------ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETIS 312
EL++ RS D ++ E ++++SK + + YCL ++G+ A +A + I
Sbjct: 265 SKYDALITELQNKRSDMYKDADDITKE-SKRRLSKSIAKICYCLDDVGLICASEATK-IC 322
Query: 313 CYESDFFAW---------EQLDGFGETIIK-------KFGSDASQALVTYVPSGAEWSIG 356
W +Q D G + KF +A + + G + +
Sbjct: 323 IERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLN 382
Query: 357 DDSKF--NLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414
+S +G ++ K+ LI+ + RC+IFV+R ITA V+ ++ + +
Sbjct: 383 SESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKK-IGHL 441
Query: 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
+ ++ G S + + K Q + ++ FR G VN++ T + EEG+ V C+ VI FD
Sbjct: 442 AHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFD 501
Query: 475 PSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCS 534
RT S++QSRGRAR ++S Y+LM++ G+ + + S M K S S S
Sbjct: 502 LPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLS 561
Query: 535 P--LNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHI--NKEMG 590
P + N E YHV +TG T SS+S++Y YC +LP D + P P F + +
Sbjct: 562 PGFVPNEEINE--YHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGY 619
Query: 591 ICTLYLPNNCPIQTVIAQG--NIKTLKQAACLEACKKLHQIGALTDNL-------LPDIV 641
+CTL LP + +Q ++ N+ KQ CL+ACKKLH++GAL D+L +P+I
Sbjct: 620 VCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPEI- 678
Query: 642 VEKHDAQKRGNEPYNAEH-PIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISAR--- 697
V K+ G H N + T + Y K +F D + +
Sbjct: 679 VSKNKGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSY----KMNFVCDQAGQIYS 734
Query: 698 NIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIM 757
VL + L E+ + DL + + ++ G ++L Q+ + FQ LF +
Sbjct: 735 EFVLLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLF 794
Query: 758 DH--NLDKLNEILDGFELRD------NLEIDYLLLPSTGQL-----IDWKTV----ATVL 800
K+ F L N YLLLP+ I+W + V
Sbjct: 795 GKLFTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVK 854
Query: 801 FPRDNGSKHNMNCSTMFNA-----RIVHTKSGPLCTCKIHNSLVCTPHNGQIYC---ITG 852
R S++ +F++ ++H + + + +V H G+IY IT
Sbjct: 855 LMRRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKIYTALDITE 914
Query: 853 VLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQK 912
+ G + + T+ ++++++YGI L +PLL + + N LS + +
Sbjct: 915 LSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDE 974
Query: 913 QKEPSKIS------------FELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAV 960
+S +PPEL + P+ + SF P++M+R++SL LA
Sbjct: 975 GNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEI--LRSFYLFPALMYRIESLTLAS 1032
Query: 961 NLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQ 1020
L++ + + I + +LEAITT +C EDF +E LE LGDS LKYA S LF +
Sbjct: 1033 QLRSEI---GYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFP 1089
Query: 1021 NNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNS---------- 1070
N EG LS + +I NA L KLG E+ + G++R +FDP+ W+ PG S
Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1149
Query: 1071 GSYELNDDSLFNGRKIYVTGRKKVK------SKTVADVVEALIGAFLSTGGENVGLIFLD 1124
S + DD K V G+ K SKT+AD VEA+IGA+ + GG + L
Sbjct: 1150 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLK 1209
Query: 1125 RIGIKVD-----FVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYML 1179
+GI + V Q + + LE+ L YSF LLVEALTH S
Sbjct: 1210 WLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQE 1269
Query: 1180 PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGL 1239
CY+RLEFLGDAVLD L+T YL+N + + G LTD+RSASVNN+ +A +VKH
Sbjct: 1270 LGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNF 1329
Query: 1240 HKHILHASHELYKRINITVDSFEKLSLGST-FGWESVTSFPKALGDIIESLAGAIFVDSG 1298
H + H+S L +I V+ E S+ + + PK LGDI+ES+AGAI +D+
Sbjct: 1330 HHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTK 1389
Query: 1299 CNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAV-TVE 1357
+ +VV+ PLL P++TPE + P REL E+C K+ + + + R G V T++
Sbjct: 1390 LDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVG--INCRDQGDTVVATLD 1447
Query: 1358 VQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
VQ L +K AK A +LK L
Sbjct: 1448 VQLKEVLLVRQGFSKKRKDAKAHASSLLLKDL 1479
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust.
Identities = 479/1453 (32%), Positives = 736/1453 (50%), Gaps = 105/1453 (7%)
Query: 9 DTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSP 68
D + ++ D AR YQ+E + A ++N IV+L TG GKT IA+ML+ +L+ P
Sbjct: 111 DPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKK 170
Query: 69 FVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
V +FL P V LV QQA+ I + KV + G + + W+ E++ +EVLVMTPQ
Sbjct: 171 SVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRI-VKSHSEWEREIAANEVLVMTPQ 229
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARGK--HQYACIMTEFYHRLLETGDSNLPRIFGM 186
ILL L+ + K+ I +LI DECHHA+ + H YA IM FY ++ PRIFGM
Sbjct: 230 ILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFY----KSESLQRPRIFGM 285
Query: 187 TASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246
TASP+ K S ++ + I+ LE L+N+KVY+ S L F+ K +Y+ +
Sbjct: 286 TASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYR-SALS 344
Query: 247 HALYTHLADELAMIELKHTRSLENL----DLNEAQAELIRKKVSK-INSTLLYCLSELGV 301
A + + E M+E R L +L D ++ Q L K++ K + L+Y L LG+
Sbjct: 345 DASQSTIRYE-NMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGL 403
Query: 302 WLALKAAETISCYESDFFAWEQLDGFG--ETIIKKFGSDASQALVTYVPSGAEWSIGDDS 359
W A++AA+ SD ++ G I + S A++AL + V + E + S
Sbjct: 404 WGAIQAAKIQ--LNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGV-AKDENASDLLS 460
Query: 360 KFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL-LPRHCTWK 418
L L + K+V LI+ L +R ++CIIFV R++TA L +L+ L L R +WK
Sbjct: 461 LAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLR--SWK 518
Query: 419 TKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478
+ ++ G +SG++ SR+ I++ F+ +N++VAT + EEGLD+Q+C LVI +D T
Sbjct: 519 SDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPET 578
Query: 479 VCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNN 538
V SFIQSRGRARM S+Y +V SG+ +EN+ + ++M E+ +S P
Sbjct: 579 VTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCP--- 635
Query: 539 HMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHIN--KEMG--ICTL 594
E+ Y V TG + SS+SL+Y YCSRLP D +F+P P+F E G IC +
Sbjct: 636 -RLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRI 694
Query: 595 YLPNNCPIQTVIAQ--GNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVE--------- 643
LP N PI + + + + K+ ACL+A +LH +G L D LLPD E
Sbjct: 695 TLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDE 754
Query: 644 ------KHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISAR 697
K + RG+ Y P+ F + P + + H Y I H D +
Sbjct: 755 FDFDNIKGEGCSRGDL-YEMRVPVLFKQKW---DPSTSCVNLHSYYIMFVPH-PADRIYK 809
Query: 698 NIVLAMRTELESEIKKVNFDLEVERGR-LTVNLKHLGRIQLIPNQVLLCRRFQITLFRVI 756
M++ L E + ++ DL + R ++V + G + +++ L FQ +V+
Sbjct: 810 KFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVL 869
Query: 757 MDHNLDKLNEILDGF---ELRDNLEID----YLLLP---STGQLI---DWKTVATVLFPR 803
+ E++ F EL+D+ YLLLP G+ + DW T+ L
Sbjct: 870 FERG-----ELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSP 924
Query: 804 DNGSKHNMNCSTMFNARIVHTKSGPLC--TCKIHNSLVCTPHNGQIYCITGVLGHLNANS 861
+ + +F H K C + NSLV T ++ Q Y + + N S
Sbjct: 925 IFKTPSVL-VEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFS 983
Query: 862 LFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKIS- 920
+ S ++ + + YG++L +PLL + + HV+N L R Q EP ++
Sbjct: 984 PVKES--STKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHN-RMQTNLEPQELDE 1040
Query: 921 --FELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPT 978
E+PPEL + + +S S + +PSIMHR+++LL+A+ LK++L + +
Sbjct: 1041 YFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSG 1100
Query: 979 IKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038
+VLEA+TT+KC E LE LE LGD+FLK+A S+ LF + + EG L+ ++ +++N+
Sbjct: 1101 HRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNS 1160
Query: 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPG-------DNSGSYE---LNDD----SLFNGR 1084
LC+L ++ L +IR ++ DP + G D S E LN D G
Sbjct: 1161 NLCRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGE 1220
Query: 1085 KIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQ------ 1138
G + KT+ADVVEAL+GAFL G + FL IG+ VDF ++ Q
Sbjct: 1221 IRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIAS 1280
Query: 1139 RQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLD 1198
R++ R N+ LE+ L+Y F LLV+A H SY CYQRLEFLGDAVLD
Sbjct: 1281 RRYLPLTTR-NNLETLENQLDYKFLHKGLLVQAFIHPSYNR-HGGGCYQRLEFLGDAVLD 1338
Query: 1199 YLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITV 1258
YL+T Y + +P L PG LTD+RS SVNN+ A +V L + + S L++ I
Sbjct: 1339 YLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYT 1398
Query: 1259 DSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITP 1318
+ L S G PK LGD++ES GA+F+D G N V+ + L+P+
Sbjct: 1399 NFLASSPLAS--GQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNL 1456
Query: 1319 ETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAK 1378
++ P++EL E CQ + ++ A++ G V ++V NG + +K+
Sbjct: 1457 SNLQISPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGT 1515
Query: 1379 KVACKEVLKSLRA 1391
K A + ++ +L+A
Sbjct: 1516 KKAAQLMITNLKA 1528
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust.
Identities = 457/1421 (32%), Positives = 699/1421 (49%), Gaps = 131/1421 (9%)
Query: 15 SADTLPFARNYQL-EALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR--KPSPFVA 71
+ADT P R QL E E AL+ NTI L+TGSGKT++A+ML R +A +R + +
Sbjct: 33 TADTTP--RTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIV 90
Query: 72 VFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL 131
VFL P V LV QQ E I+ +TDL V G V W WKEE+ ++E++VMTPQILL
Sbjct: 91 VFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILL 150
Query: 132 DGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191
D LR ++ ++ + +LI DECH A G H YA IM EFY G P +FGMTASP+
Sbjct: 151 DALRHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFYF-----GSQWRPDVFGMTASPV 205
Query: 192 KSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY-----KYDEIP 246
+K +S+ + I LE +++K+Y + L +F P +T K+Y +D +
Sbjct: 206 ATKGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLK 265
Query: 247 HALYTHLADELA--MIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG---- 300
L +DE ++ L+ + S + D + E RK +S+ + +LY L++LG
Sbjct: 266 SKLQI-FSDEFDSLLVGLQESPSNKFKDTDNI-LETSRKSLSRYHGKILYSLNDLGPIIT 323
Query: 301 ---VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGD 357
V + +++ + + E F+ L + + +A + +P G +
Sbjct: 324 SEVVKIHIESVKPLCDSEDCIFSKASL-----CLHMSYFKEALSLIEEILPQGYGELMKS 378
Query: 358 DSKFN--LDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHC 415
+S G ++ K+ LI + ++ C+IFV+R+ITA ++ + ++ C
Sbjct: 379 ESGSEELTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSC 438
Query: 416 TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475
+ Y+ G ++ S Q ++ FR G VN++ T + EEG+DV +C+ VI FD
Sbjct: 439 -FSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDL 497
Query: 476 SRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVL-SHASLPCS 534
RTVCS++QSRGRAR NS+++LM++ G+ Q + + +G ++ L H +
Sbjct: 498 PRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSY 557
Query: 535 PLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGI--C 592
L+ + G Y V+STG T V+LI YC +LP D YF P P F + E G+ C
Sbjct: 558 DLS--IQGMYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKC 615
Query: 593 TLYLPNNCPIQTVIA--QGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHD---- 646
TL LP N Q+++ + KQ LEACKKLHQ+G L D+L+P + E D
Sbjct: 616 TLTLPRNAAFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVP-LTEEPMDTDFT 674
Query: 647 ----------AQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISA 696
+ E + + ++ S T TY + ++ NY
Sbjct: 675 TADEKCISGPGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENY---- 730
Query: 697 RNIVLAMRTELESEIKKVNFDLEVERGRLT-VNLKHLGRIQLIPNQVLLCRRFQITLFRV 755
VL M EL+ ++ DL + ++ + G++QL Q+ + FQ F
Sbjct: 731 AGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNG 790
Query: 756 IMD---HNLDKLNEILD-----GFELRDNLEIDYLLLP-------STGQLIDWKTVATV- 799
I H K D G E++ N E YLLLP I W+ + +
Sbjct: 791 IFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCA 850
Query: 800 -----LFPRDNGSKHNMNCSTMFNAR------IVHTKSGPLCTCKIHNSLVCTPHNGQIY 848
L+ G ++ + + + R I+H + L I +S+V + H G+IY
Sbjct: 851 GAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIY 910
Query: 849 CITGVLGHLNANSLFTR----NNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNY 904
+ ++ A F T++ +Y ++YGI + +PLL ++ + N
Sbjct: 911 TVLDLILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNL 970
Query: 905 L-SKCRQQKQK-------EPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSL 956
L SK + E +I +PPEL +I ++ SF +PS++HRLQSL
Sbjct: 971 LFSKLKYLDGSTGKPLLMEKEQIHARVPPEL--LIHLDVTTDILKSFYLLPSVIHRLQSL 1028
Query: 957 LLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLF 1016
+LA L+ + N IP +LEAITT +C E F LE LE LGDS LKY LF
Sbjct: 1029 MLASQLRREI----GYNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLF 1084
Query: 1017 KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGD-------- 1068
Y HEG LS + + + NA L K G + L G++R +FDP+ W+ PG
Sbjct: 1085 LRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPC 1144
Query: 1069 NSG----------SYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENV 1118
N G Y +D S F G+ G + + SKT++D VEAL+GA+ GG
Sbjct: 1145 NCGIETAFVPSHRRYIRDDPSFFVGKPCD-RGHRWMCSKTISDCVEALVGAYYVGGGIAA 1203
Query: 1119 GLIFLDRIGIKVD-----FVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALT 1173
L + GI + V + ++ ++ LE+ L Y+F LL+EA+T
Sbjct: 1204 ALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAIT 1263
Query: 1174 HGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALS 1233
H S + CYQRLEFLGD+VLD L+T +LY + + PG LTD+RSA V+N+ +A +
Sbjct: 1264 HPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQA 1323
Query: 1234 SVKHGLHKHILHASHELYKRINITVDS-FEKLSLGSTFGWESVTSFPKALGDIIESLAGA 1292
V++ +H H+ H S L ++I V S E S F + PK LGDI+ES+AGA
Sbjct: 1324 VVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGA 1383
Query: 1293 IFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYC 1333
+F+D+ N ++V++ PLL P+ITP+ + P REL E C
Sbjct: 1384 VFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELC 1424
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 289/839 (34%), Positives = 427/839 (50%), Gaps = 112/839 (13%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRS-YAYLLRKPSPFVAVFLVPKVVL 80
AR YQL+ LE A +NTI FLETG+GKTLIAI+L++S + L+ + ++VFLVPKV L
Sbjct: 249 ARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPL 308
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
V QQAE I+ T +VG Y G+MG DFWD W+ E +VLVMT QILL+ LR S +
Sbjct: 309 VYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIR 368
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
+ I +LILDECHHA KH Y+ +M+EFYH T P IFGMTASP+ K SS+
Sbjct: 369 METIDLLILDECHHAVKKHPYSLVMSEFYHT---TPKDKRPAIFGMTASPVNLKGVSSQV 425
Query: 201 DYWQKIHDLETLMNSKVYTCASESVLSNFIPF------------------STAKFKFYKY 242
D KI +LET ++S V T L +P T K
Sbjct: 426 DCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAV 485
Query: 243 DEIPHA-------LYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYC 295
+E A + D A EL+ + ++ A LI K + IN Y
Sbjct: 486 EEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK-LRAIN----YT 540
Query: 296 LSELGVWLALKAAET-ISCYESDFFAWEQLD-GFGETIIKKFGS-------DASQALVTY 346
L+ELG W A K ++ +S +SD Q+D F E+ + + S + + A
Sbjct: 541 LAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVA 600
Query: 347 VPSGA-----------EWSIGDDSKFN------------LDSGLLTEKIVCLIESLLEYR 383
G E + DD + + G +T K+ LI+ LL+Y+
Sbjct: 601 AEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQ 660
Query: 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEE 443
D R I+FVERV+ A+VL + +EL P + + G+N+ + +S + Q+ I +
Sbjct: 661 HTADFRAIVFVERVVAALVLPKVFAEL-PSLSFIRCASMIGHNNSQEMKSSQMQDTI-SK 718
Query: 444 FRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSG 503
FR G V ++VATS+ EEGLD++ CN+V+ FD ++TV ++IQSRGRAR SDY+LMV+ G
Sbjct: 719 FRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERG 778
Query: 504 DSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGED-----FYHVESTGTIATLS 558
+ + + L N S +RKE + L + + D Y VE+TG + +L+
Sbjct: 779 NVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLN 838
Query: 559 SSVSLIYFYCSRLPSDGYFKPTPKFHINKEMG-------ICTLYLPNNCPIQTVIAQG-- 609
S+V L++FYCS+LP D Y P+F + K C L LP N P + I +G
Sbjct: 839 SAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE--ILEGPV 896
Query: 610 --NIKTLKQAACLEACKKLHQIGALTDNLLPDIV----VEKHDAQKRGNE-PYNAEHPIY 662
+++ +QA CL ACKKLH++GA TD LLPD EK D G P A H +
Sbjct: 897 CSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREF 956
Query: 663 FPP--------ELVNQSPQ--DTKITYHCYLIEL--------KQHFNYDISARNIVLAMR 704
+P E V+ + ++ +H Y+ + K F ++S I+
Sbjct: 957 YPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFG-- 1014
Query: 705 TELESEIKKVNFDLEVERGRLT-VNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLD 762
EL++E+ ++ DL V R +T +L G + + NQ+ ++F + L +++D +++
Sbjct: 1015 NELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVE 1073
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dcl1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 358 bits (920), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 374/1392 (26%), Positives = 592/1392 (42%), Gaps = 195/1392 (14%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY------AYLLRKPSPFVAVFLVP 76
R YQLE E A QNTI L+TGSGKTLIA++LL+ + KP +A FLV
Sbjct: 118 REYQLELFERAKVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHR-IAFFLVD 176
Query: 77 KVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL 136
V L QQA ++ + D VG ++G MG D W + W + K+ V+V T +IL L
Sbjct: 177 SVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLLN 236
Query: 137 SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVS 196
SY K++ I +LI DE HH + H YA I+ + Y LE S PRIFGMTASPI +K
Sbjct: 237 SYIKMSQINILIFDEAHHTKKDHPYARIIRDSY---LEEVYSKRPRIFGMTASPIDTK-- 291
Query: 197 SSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHA--LYTHLA 254
D + LE L++S++ T ++ S+L + + E P A LY HL
Sbjct: 292 ---GDIVDEATRLEKLLDSRIATTSNMSLLRQVARRPVERVWSFNKLEQPFATSLYKHLE 348
Query: 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCY 314
D + LE + QA SELG W + +A
Sbjct: 349 DRFGDMA-----CLEGIFRFAWQAS-----------------SELGRWCSDRAW------ 380
Query: 315 ESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGA---------------EWSIGDDS 359
+ A + L ++ K S+ S + VP A ++
Sbjct: 381 -ARALADDVLPKLEGSVRKTANSETS----SNVPESAYKEILRITEASEIVKSYAFSSPE 435
Query: 360 KFNLDSGLLTEKIVCLIESLLEYRGVE-DIRCIIFVERVITAIVLQSLLSEL-LP-RHCT 416
F G L+ K+ L E L Y G + + +CI+F ++ TA++L L L +P
Sbjct: 436 TF----GQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQTLNIPFLRPG 491
Query: 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS 476
+G+ +G+ R++ +V+ FR G +N + ATS+ EEGLD+ CNLV+ FD
Sbjct: 492 VLIGVRSGDLAGMNITFRQQFISLVK-FRTGEINCLFATSVAEEGLDIPDCNLVVRFDLY 550
Query: 477 RTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL 536
+T+ ++QSRGRAR NS Y MV+ G+ + RL +++ + + P
Sbjct: 551 QTLIQYVQSRGRARHFNSTYASMVERGNLEHEQRLL-------EVQDAEMMQSFCRTLPE 603
Query: 537 NNHMYGEDF--------------YHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPK 582
+ +YG D + ++STG T S+ +++ Y S L + F
Sbjct: 604 DRLLYGFDHDLDTVLQKDEGNRTFRIKSTGAKLTYHSATAILARYASSLQYEKEFSAQVT 663
Query: 583 FHINKEMG--ICTLYLPNNCPIQTVIAQGNIKT--LKQAACLEACKKLHQIGALTDNL-- 636
+ + G +C + LP PI+ + +K K++A + C L + L D+
Sbjct: 664 YVVLPINGAFVCEVILPEKSPIRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNS 723
Query: 637 -----LPDIVVEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFN 691
LP + +A+ +++ + P L + H I
Sbjct: 724 IYHRRLPAM----RNAKLAITSKRTSQYDMISKPSLWGRKQGMPPKELHGTFITFLPSMQ 779
Query: 692 YDISARNIVLAMRTELESEIK-KVNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQI 750
++L R L + + D +VE +T L+ ++ L +V F +
Sbjct: 780 LSHEPAPLLLFTRERLPHFPEFPIFLDDDVETTIITTPLEK--QLLLSEKEVDALTVFTL 837
Query: 751 TLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGS--- 807
+FR + DK E + + ++ YL Q++DW+++ V RDN S
Sbjct: 838 RVFRDVFHKTYDKEPEKMAYWLAPAKVQSSYLPSYDPRQILDWESLTYV---RDNDSIPF 894
Query: 808 KHNMNCSTMFNARIVHTKSGP--LCTCKIHNSLVCTPHNGQIYCITGVLGHLN--ANSLF 863
N + + + + G T + +SL + H+N N
Sbjct: 895 STNADPESWVDLFVFDAWDGRCRFFTVGVEHSLTPS---SPPPPFVARRRHMNDVMNYCL 951
Query: 864 TRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFEL 923
+ + S + + C +P+L + +N L K ++ ++ +
Sbjct: 952 SLSKNSRAKF---------LSTCHWDQPVLRAELVRLRRNLLDKMTDTERDVETRCFICI 1002
Query: 924 PPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLE 983
P + ++ I ST +S P+I+ R+ + L+++ L N T+ LE
Sbjct: 1003 EP----LKVSAIPASTAFSCLAFPAIISRIDAYLISLQGCESL------NFTVKLDLALE 1052
Query: 984 AITTKKCQEDFH--------------LESLETLGDSFLKYAASQQLFKTYQNNHEGLLSV 1029
A T D H E LE LGD FLK A S LF ++ E V
Sbjct: 1053 AFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHV 1112
Query: 1030 KKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNG----RK 1085
+ +I N L ++++ +IR+ F W G L G RK
Sbjct: 1113 NRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLK----------LLQGKDHSRK 1162
Query: 1086 IYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFL---------------DRIGIKV 1130
+ + KT+ADV EALIGA L +GG + +R +
Sbjct: 1163 ATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAERWKDYI 1222
Query: 1131 DFVNVP-YQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSY--MLPEIPRCYQ 1187
F +P YQR+ AE ++ R +E L+Y FR P+LL A TH SY ++P CYQ
Sbjct: 1223 SFYTIPKYQRRAADGAELYLS-RKIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVP-CYQ 1280
Query: 1188 RLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHAS 1247
RLEFLGD+++D + L+ ++P P +LT+ + A V+N +VK GLH H+ + S
Sbjct: 1281 RLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFS 1340
Query: 1248 HELYKRINI---TVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVV 1304
L +I + + E S G+ W PK L D++E+ GA+FVDS N EV+
Sbjct: 1341 APLQSQITQYAEEIQTAEGESEGAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVI 1400
Query: 1305 FQSIRPLLEPMI 1316
+ R ++P
Sbjct: 1401 ERFFRDYIKPFF 1412
|
Dicer-like endonuclease involved in cleaving double-stranded RNA in the RNA interference (RNAi) pathway. Produces 21 to 25 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs leading to sequence-specific suppression of gene expression, called post-transcriptional gene silencing (PTGS). Part of a broad host defense response against viral infection and transposons. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 286/880 (32%), Positives = 435/880 (49%), Gaps = 160/880 (18%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA-YLLRKPSPFVAVFLVPKVVL 80
AR YQLE LE A +NTI FLETG+GKTLIA++L++S +L++ +AVFLVPKV L
Sbjct: 267 ARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPL 326
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
V ++VLVMT QILL+ LR S K
Sbjct: 327 V--------------------------------------YQVLVMTAQILLNILRHSIIK 348
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
++ I +LILDECHHA KH Y+ +M+EFYH T P +FGMTASP+ K +S++
Sbjct: 349 MDAIHLLILDECHHAVKKHPYSLVMSEFYH---TTPKEKRPAVFGMTASPVNLKGVTSQE 405
Query: 201 DYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL------A 254
D KI +LE+ ++S V T L +P Y +L+ +
Sbjct: 406 DCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTV 465
Query: 255 DELAMIELKHTR----------SLENLDL---------NEAQAELIRKKVSKINSTLLYC 295
+E A+ K T+ S + L L ++ A LI +K+ IN Y
Sbjct: 466 EEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLI-QKLRAIN----YA 520
Query: 296 LSELGVWLALKAAET-ISCYESDFFAWEQLD-GFGETIIKK--------------FGSDA 339
L ELG W A K A++ ++ ++D A Q+D F E+ +KK S+
Sbjct: 521 LGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHCQLTEGAAMKSET 580
Query: 340 SQALVTYVPSG-----AEWSIGDDSKFNLD--------SGLLTEKIVCLIESLLEYRGVE 386
S + E + D ++D G +T ++ LI+ LL+Y+ E
Sbjct: 581 SDVEMQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTE 640
Query: 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446
D R IIFVERV+TA+VL +L+EL P + + G+N+ + ++ + Q+ I +FR
Sbjct: 641 DFRAIIFVERVVTALVLPKVLAEL-PSLSFIRCASLIGHNNNQEMRACQMQDTI-SKFRD 698
Query: 447 GLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDST 506
G V ++VATS+ EEGLD++ CN+VI FD ++TV ++IQSRGRAR SDY+LM++ G+ +
Sbjct: 699 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNIS 758
Query: 507 TQSRLENYLASGNKMRKEVLSHASLP-------CSPLNNHMYGEDFYHVESTGTIATLSS 559
++ L N S +RKE + L SP++ Y VESTG + +L+S
Sbjct: 759 HETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTS--PGSMYQVESTGAVVSLNS 816
Query: 560 SVSLIYFYCSRLPSDGYFKPTPKFHINK--EMG-----ICTLYLPNNCPIQTVIAQ--GN 610
+V LI+FYCS+LPSD Y P+F + K + G C L LP N P + + +
Sbjct: 817 AVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSS 876
Query: 611 IKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNE----PYNAEHPIYFPPE 666
I+ +QA CL ACKKLH++GA TD LLPD + + ++ +E P A H ++P
Sbjct: 877 IRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEGEKTEQNDEGEPLPGTARHREFYPEG 936
Query: 667 LVN--------------QSPQDTKI---TYHCYLIEL-KQHFNYDISARNIVLAMRTELE 708
+ + Q+ Q K+ + +C + K F +S N + EL+
Sbjct: 937 VADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQLS--NFAIIFGNELD 994
Query: 709 SEIKKVNFDLEVERGRLT-VNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEI 767
+E+ DL V R +T +L GRI++ +Q++L + F + L +++D ++D
Sbjct: 995 AEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTP 1054
Query: 768 LDGFELRDNLEIDYLLLPSTGQL-------IDWKTVATVL 800
D + YL +P + IDW V ++
Sbjct: 1055 WDPAKA-------YLFVPVGAEKCTDPLREIDWTLVNNIV 1087
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1396 | ||||||
| 255547506 | 1388 | ATP binding protein, putative [Ricinus c | 0.981 | 0.987 | 0.659 | 0.0 | |
| 224101241 | 1468 | dicer-like protein [Populus trichocarpa] | 0.994 | 0.946 | 0.639 | 0.0 | |
| 224109196 | 1408 | dicer-like protein [Populus trichocarpa] | 0.994 | 0.985 | 0.653 | 0.0 | |
| 359476600 | 1394 | PREDICTED: endoribonuclease Dicer homolo | 0.992 | 0.993 | 0.642 | 0.0 | |
| 449442659 | 1393 | PREDICTED: endoribonuclease Dicer homolo | 0.987 | 0.989 | 0.628 | 0.0 | |
| 297735235 | 1340 | unnamed protein product [Vitis vinifera] | 0.954 | 0.994 | 0.641 | 0.0 | |
| 356533095 | 1414 | PREDICTED: endoribonuclease Dicer homolo | 0.980 | 0.968 | 0.601 | 0.0 | |
| 356532427 | 1421 | PREDICTED: endoribonuclease Dicer homolo | 0.981 | 0.964 | 0.603 | 0.0 | |
| 145338056 | 1388 | protein dicer-like 2 [Arabidopsis thalia | 0.988 | 0.994 | 0.599 | 0.0 | |
| 94450854 | 1386 | dicer-like 2 spliceform 1 [Arabidopsis t | 0.988 | 0.995 | 0.598 | 0.0 |
| >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1892 bits (4902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 907/1375 (65%), Positives = 1116/1375 (81%), Gaps = 5/1375 (0%)
Query: 24 NYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83
+YQLEALE A++QNTIVFLETGSGKTLIAIMLLRSYA+LLRKPSPF+AVFLVP+VVLV Q
Sbjct: 11 SYQLEALEKAIQQNTIVFLETGSGKTLIAIMLLRSYAHLLRKPSPFIAVFLVPQVVLVKQ 70
Query: 84 QAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNM 143
QAEA++ HTDL VGKYWG+MGVDFWD +WK+++ ++EVLVMTPQILLDGLR S+FKL+
Sbjct: 71 QAEAVETHTDLTVGKYWGEMGVDFWDAGSWKQQIEQYEVLVMTPQILLDGLRHSFFKLDC 130
Query: 144 IKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYW 203
IKVLI DECHHARGKH YACI+TEFYHR L DS LPRIFGMTASPIKSK + SE YW
Sbjct: 131 IKVLIFDECHHARGKHPYACILTEFYHRQLTYRDSALPRIFGMTASPIKSKGAKSELAYW 190
Query: 204 QKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELK 263
+I +LE +M SKVYTCASESVL+ FIPFST KFKFYK +IP+A+Y LA+ L +++ K
Sbjct: 191 TEIRELENIMYSKVYTCASESVLAEFIPFSTPKFKFYKPMDIPYAIYASLAENLKILKSK 250
Query: 264 HTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQ 323
+ +L+ LDL +A E K++SK++STL+YCL ELGVWLALKAA+ +SC+ES+FF+ +
Sbjct: 251 YECNLKLLDLTDAVVESTSKRISKMHSTLMYCLDELGVWLALKAAQILSCHESEFFSCGK 310
Query: 324 LDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYR 383
LD GE I+K+FG +ASQAL + SG +WSIG++++ ++++GLLT KI CLI+SLL+YR
Sbjct: 311 LDISGENIVKEFGLNASQALDNCINSGPKWSIGENAEADIEAGLLTTKIFCLIDSLLDYR 370
Query: 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCT-WKTKYIAGNNSGIQCQSRKKQNEIVE 442
+ D+RCIIFV RVI AIVLQ+LL ELLPR+ + WKT+YIAGNN +Q QSRK QNEIVE
Sbjct: 371 DIRDLRCIIFVNRVIAAIVLQTLLGELLPRYNSGWKTQYIAGNNFRLQSQSRKTQNEIVE 430
Query: 443 EFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKS 502
EFR G VN+IVATSILEEGLDVQSCNLV+ FDPS TV SFIQSRGRARMQNSDYLLMVKS
Sbjct: 431 EFREGKVNIIVATSILEEGLDVQSCNLVVRFDPSTTVSSFIQSRGRARMQNSDYLLMVKS 490
Query: 503 GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVS 562
GD +T SRLENYLASG+ MRKE + H S+PCSP+ + + ++Y VEST + TL+SSVS
Sbjct: 491 GDVSTHSRLENYLASGDLMRKESIRHGSVPCSPIRSEFHEGEYYFVESTNALVTLTSSVS 550
Query: 563 LIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEA 622
LIYFYCSRLPSDGYFKPTP+ I+KEM CTL LP +C I T+ +GN+K +KQ ACLEA
Sbjct: 551 LIYFYCSRLPSDGYFKPTPRCLIDKEMERCTLLLPKSCSIHTISVEGNVKIIKQKACLEA 610
Query: 623 CKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCY 682
CK+LH+IGAL DNL+PDIVVE+ AQ+ GN PY+ EHP+YFPPELV Q+ Q ++ Y+CY
Sbjct: 611 CKQLHKIGALNDNLVPDIVVEETVAQQSGNGPYDDEHPMYFPPELVGQASQKSEAKYYCY 670
Query: 683 LIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQV 742
LIEL Q+F Y+I N VLAMR+ELES+I ++ DLE +RG L V LK++G I L P V
Sbjct: 671 LIELNQNFVYEIPVHNFVLAMRSELESDILGLDLDLEADRGLLMVKLKYIGEIHLTPETV 730
Query: 743 LLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQL----IDWKTVAT 798
++CR+F IT+ +V++DH++DKL +IL G +LR+ EIDYLLLP G IDW V +
Sbjct: 731 IMCRKFLITVLKVLVDHSIDKLEDILKGLKLRNGPEIDYLLLPLVGSCQKPSIDWDAVTS 790
Query: 799 VLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLN 858
VLF +N + + NC A ++ TK G +C C + NS+V TPHNG++Y I G L HLN
Sbjct: 791 VLFSYENVLEDHKNCPLKEAACVIQTKDGVVCKCTLQNSVVYTPHNGKVYFIDGTLDHLN 850
Query: 859 ANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSK 918
+SL NG +Y ++Y++++GI+L FD++ LL GR IF +QNYL++CRQQK+K+
Sbjct: 851 GHSLLELRNGYHKSYMEYYKDQHGIKLHFDQQLLLRGRHIFPLQNYLNRCRQQKEKDSQN 910
Query: 919 ISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPT 978
ELPPELC I M+PIS+S+FYSFTFVPSIMHRL+SLL+A NLK + LDHCMQ+V IPT
Sbjct: 911 AYVELPPELCHIFMSPISISSFYSFTFVPSIMHRLESLLIASNLKKLHLDHCMQSVAIPT 970
Query: 979 IKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038
IKVLEAITTKKCQE FHLESLETLGDSFLKYA QQLFKTYQN+HEGLLS+KK+++ISNA
Sbjct: 971 IKVLEAITTKKCQEKFHLESLETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNA 1030
Query: 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKT 1098
LC+LGC+ K+PGFIR ESFDPK W+IP + SG Y L+++ L NGRK+Y+ R+K+K K
Sbjct: 1031 TLCRLGCDSKIPGFIRNESFDPKNWLIPDEISGCYSLSEEILSNGRKMYIKRRRKLKEKM 1090
Query: 1099 VADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLL 1158
+ADVVEALIGA+LSTGGE GL+FLD IGIK DF+N+PY+R F+++ E+ VN+ HLESLL
Sbjct: 1091 IADVVEALIGAYLSTGGEIAGLLFLDWIGIKADFLNMPYERGFEMNPEKYVNICHLESLL 1150
Query: 1159 NYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLT 1218
YSFRDP LLVEALTHGSYMLPEIPRCYQRLEFLGD+VLDYLITV+LY KYPG+SPG LT
Sbjct: 1151 KYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITVHLYEKYPGMSPGLLT 1210
Query: 1219 DMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSF 1278
DMRSASVNNDCYA S+V+ GLHK+ILHAS +L+K I TV + ++ S STFGWES SF
Sbjct: 1211 DMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCKEFSSESTFGWESEISF 1270
Query: 1279 PKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHF 1338
PK LGD+IESLAGAIFVDSG N+EVVF SIRPLLEP+ITPET+R HP RELTE CQK HF
Sbjct: 1271 PKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIRLHPTRELTELCQKQHF 1330
Query: 1339 SMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393
+KPV SR +G + VTVEV+ANG +F+HT A++KTAK++A KEVL++L+ S
Sbjct: 1331 DRRKPVVSRNNGMSCVTVEVEANGVVFKHTSAAAERKTAKRLASKEVLRALKDSL 1385
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1875 bits (4857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1460 (63%), Positives = 1131/1460 (77%), Gaps = 71/1460 (4%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
MEPVSM+ DTT+++ AD LPFAR+YQLEALE ALK NTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 1 MEPVSMDIDTTQQLPADPLPFARSYQLEALEKALKHNTIVFLETGSGKTLIAIMLLRSYA 60
Query: 61 YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YLLRKPS F+AVFLVP+VVLV QQA A++MHTDLKVG YWG+MGVDFW+ ATWK+E+ KH
Sbjct: 61 YLLRKPSRFIAVFLVPQVVLVRQQAGAVEMHTDLKVGMYWGEMGVDFWNAATWKKEIEKH 120
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTPQILL+GLR S+FKL++IKV+I+DECHH RGKH YA IMTEF+H L++G +L
Sbjct: 121 EVLVMTPQILLNGLRHSFFKLDLIKVMIVDECHHTRGKHPYASIMTEFFHCELKSGHHDL 180
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK------------------------ 216
PRIFGMTASPIKSK ++SE YWQ+I +LE +MNSK
Sbjct: 181 PRIFGMTASPIKSKGANSELYYWQQIRELEDIMNSKLLSPFAFGSLLQDEDDPHGTFQMH 240
Query: 217 -------------------------VYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251
+YTC SES L+ FIPFST KF FY++ +IP ++
Sbjct: 241 STNIHVISHSCSKVFENCIPGTRHMIYTCVSESALAEFIPFSTPKFLFYEHMKIPDGIFA 300
Query: 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETI 311
L EL + KH LE LDLNE+ A I K+SK++S L++CL ELGVWLA +AA+ +
Sbjct: 301 SLLKELGNLRTKHEHMLEQLDLNESAAVSICNKISKVHSALMFCLEELGVWLAFQAAQFL 360
Query: 312 S-C-YESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLT 369
S C + DF + +LD GETI+K F DAS A+ G E SIGD+ K +L +GLLT
Sbjct: 361 SHCDTDGDFISGGKLDVSGETIVKNFCQDASLAISNCFSDGQECSIGDNIKAHLGAGLLT 420
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
KI+CL+ESLL+YR +++IRCI+FVERVITAIVL+SLLS+LLP+H +WKTKYIAGNNSG+
Sbjct: 421 SKILCLVESLLQYRDLKEIRCIVFVERVITAIVLESLLSKLLPKHGSWKTKYIAGNNSGL 480
Query: 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
Q Q+RK QNEIVEEFR+G+VN+IVATSILEEGLDVQSCNLVI FDPS TV SFIQSRGRA
Sbjct: 481 QSQTRKIQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVSSFIQSRGRA 540
Query: 490 RMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVE 549
RMQNSDYLLMVK GD +T +RLENYLASG+ MR+E L HAS+PCSPL + + ++FY VE
Sbjct: 541 RMQNSDYLLMVKRGDFSTHARLENYLASGDIMRRESLRHASIPCSPLLDEL-DDEFYRVE 599
Query: 550 STGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQG 609
TG + +LSSSVSLIYFYCSRLPSDGYFKP P+ I+KE CTL+LP + P+QT+ QG
Sbjct: 600 GTGAVVSLSSSVSLIYFYCSRLPSDGYFKPAPRCIIDKETMTCTLHLPKSSPVQTICVQG 659
Query: 610 NIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIYFPPELVN 669
NIKTLKQ ACLEACKKLH GALTDNL+PDIV+E+ A+ GNE Y+ E PIY PPELV+
Sbjct: 660 NIKTLKQKACLEACKKLHVSGALTDNLVPDIVMEEAVAEDVGNERYDDEQPIYLPPELVS 719
Query: 670 QSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESE-IKKVNFDLEVERGRLTVN 728
+ P++ K Y+CYLIEL Q+F YDI ++VL +RTELES+ I+ + FDLE ERG LTVN
Sbjct: 720 RGPRNLKTKYYCYLIELNQNFAYDIPVHDVVLVVRTELESDVIRSMGFDLEAERGLLTVN 779
Query: 729 LKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPS-- 786
L+++G I L VLLCRRFQITLF+V++DH+++KL E+L+G +L EIDY LLP+
Sbjct: 780 LRYIGDIDLERVLVLLCRRFQITLFKVLLDHSVNKLKEVLEGLDLGSGAEIDYFLLPAFR 839
Query: 787 --TGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHN 844
+ I+W +++VLF N + + NCS NA +V TK GP+C C + NSLVCTPHN
Sbjct: 840 SCSQPSINWAPISSVLFSYKN--EEHFNCSRNGNAHVVQTKCGPVCACVLQNSLVCTPHN 897
Query: 845 GQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEER------------YGIQLCFDREPL 892
G IYCITGV LN NSL +G TYK+++ +R +GIQL F+REPL
Sbjct: 898 GNIYCITGVFEDLNGNSLLKMGDGGAITYKEYFAKRPMSDLKLTLDFRHGIQLLFNREPL 957
Query: 893 LNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHR 952
L G+ IF V N L++CR+QK+K ELPPELC II++PIS+ST YS+TF+PSIMHR
Sbjct: 958 LKGKHIFPVHNLLNRCRKQKEKASKNTHVELPPELCEIILSPISISTLYSYTFIPSIMHR 1017
Query: 953 LQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAAS 1012
L+SLL+AVNLK M DH +Q+V IP++KVLEAITT KCQE+F+LESLETLGDSFLKYAAS
Sbjct: 1018 LESLLIAVNLKKMHSDHYLQHVNIPSMKVLEAITTNKCQENFNLESLETLGDSFLKYAAS 1077
Query: 1013 QQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGS 1072
QQLFK YQN+HEGLLS KK++IISNAALC+ GC KL GFIR ESFDPK+WIIPG GS
Sbjct: 1078 QQLFKIYQNHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGS 1137
Query: 1073 YELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF 1132
L+++ L GRKIY+ GR+KVKSKT+ADVVEALIGA+LSTGGE L+F+D IGIKVDF
Sbjct: 1138 DFLSEEPLSKGRKIYIRGRRKVKSKTIADVVEALIGAYLSTGGEVTALLFMDWIGIKVDF 1197
Query: 1133 VNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFL 1192
+N PY+R Q+ AE+ VNVR+LESLLNYSF DPSLLVEALTHGSYMLPEIPRCYQRLEFL
Sbjct: 1198 MNTPYERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFL 1257
Query: 1193 GDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYK 1252
GDAVLDYLIT+++Y +YPG+SPG LTD+RSASVNNDCYALS+VK GL +HILHASH+L+K
Sbjct: 1258 GDAVLDYLITLHMYKEYPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHK 1317
Query: 1253 RINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLL 1312
I TV ++ SL STFGWES T+FPK LGD+IESLAGAI VDSG N+EVVF+SIRPLL
Sbjct: 1318 HIVATVKKIQEFSLESTFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLL 1377
Query: 1313 EPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDA 1372
EP+ITPET+R PVREL E CQ+ HF KKP+ SR A+VT+EV+ANG +F+HT A
Sbjct: 1378 EPLITPETLRLQPVRELNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVA 1437
Query: 1373 DKKTAKKVACKEVLKSLRAS 1392
DK TAKK+A KEVLK+L+ S
Sbjct: 1438 DKTTAKKLASKEVLKALKES 1457
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa] gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1862 bits (4823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1400 (65%), Positives = 1103/1400 (78%), Gaps = 12/1400 (0%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
MEPVS++ DTT+++ AD LPFAR+YQLEALE ALKQNTIVFLETGSGKTLIA MLLRSYA
Sbjct: 1 MEPVSVDIDTTQQLPADPLPFARSYQLEALEQALKQNTIVFLETGSGKTLIATMLLRSYA 60
Query: 61 YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
+LLRKPS F+AVFLVP+V LV QQA ++MHTDL VG YWGDMG+DF ATWK+E+ KH
Sbjct: 61 HLLRKPSRFIAVFLVPEVFLVRQQAGVVRMHTDLNVGMYWGDMGIDFSHAATWKQEIDKH 120
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMT QILL+GLR YFKL+ IKVLI DECHHARG H YACIMTEF+HR L +G +L
Sbjct: 121 EVLVMTHQILLNGLRQGYFKLDFIKVLIFDECHHARGNHPYACIMTEFFHRELRSGHHDL 180
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS IKSK ++SE Y Q+I +LE +MNSKVYTCASE+VL+ FIP A+F FY
Sbjct: 181 PRIFGMTASLIKSKGANSESYYRQQICELENIMNSKVYTCASETVLAEFIPSPAAEFLFY 240
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
+ +IP +Y L +EL ++ KH L+ LDL+E+ AE + K+SK++S L++C ELG
Sbjct: 241 EPMKIPDGIYACLEEELGNLKAKHELLLKQLDLSESAAESVHSKISKVHSALMFCSGELG 300
Query: 301 VWLALKAAETISC--YESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDD 358
VWLA +AA +S +SDF AW ++D GETI+KKF DAS LV AE IGD+
Sbjct: 301 VWLAFQAARFLSHSDTDSDFIAWGKVDVSGETIVKKFCWDAS--LVISNCFSAECCIGDN 358
Query: 359 SKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWK 418
++ ++ +GL+T K++CLI++LL+YR ++DIRCI+FVERVITA+VL+SLL ELLP+H +WK
Sbjct: 359 TEADVGAGLITAKVLCLIKTLLQYRDLKDIRCIVFVERVITAVVLESLLRELLPKHSSWK 418
Query: 419 TKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478
TKYIAGNNSG+Q Q+R+ QNEIVEEFR+G+VN+IVATSILEEGLDVQSCNLVI FDP +
Sbjct: 419 TKYIAGNNSGLQSQTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPPSS 478
Query: 479 VCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNN 538
V SFIQSRGRARMQNSDYLLMVK+ DSTT SRLENYL+S MR+E L +S CS +
Sbjct: 479 VSSFIQSRGRARMQNSDYLLMVKTEDSTTHSRLENYLSSSEIMRRESLRRSSTSCSAPQS 538
Query: 539 HMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPN 598
+Y ++FY VE TG + TLSSSVSLIYFYCSRLPSDGYFKP P I+KE CTL+LP
Sbjct: 539 ELYEDEFYSVEGTGAVVTLSSSVSLIYFYCSRLPSDGYFKPAPICIIDKEKETCTLHLPK 598
Query: 599 NCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAE 658
+ PIQ + QGN K LKQ ACLEACK+LH IGALTDNL+PD+V E+ AQ+ NE Y+ E
Sbjct: 599 SSPIQNICVQGNNKNLKQKACLEACKQLHLIGALTDNLVPDVVEEEAVAQEIRNERYDDE 658
Query: 659 HPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEI-KKVNFD 717
PIY PPEL +Q P++ K Y+CYLIEL Q F+Y + +IVL MRTELES++ + F+
Sbjct: 659 QPIYLPPELASQGPRNLKTKYYCYLIELNQKFDYGVPVHDIVLVMRTELESDVLSSMGFE 718
Query: 718 LEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNL 777
LE ERG L V+L+++G I L VLLCRRFQITLF V++ ++KL E+L G EL +
Sbjct: 719 LEAERGLLAVSLRYIGDIYLDQVPVLLCRRFQITLFEVLIHREVNKLEEVLKGLELGTGV 778
Query: 778 EIDYLLLPS----TGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCK 833
+DY LLP+ + IDW+ +++VLF N + + NCS+ NA +VHTK GP+CTC
Sbjct: 779 VMDYFLLPAIRSRSQPSIDWEPISSVLFSYKN--EDHFNCSSKGNAHVVHTKGGPVCTCV 836
Query: 834 IHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHY-EERYGIQLCFDREPL 892
+ NSLVCTPHNG +Y ITG LN SL NGS TYK+H+ + R IQL FD+EPL
Sbjct: 837 LQNSLVCTPHNGNVYFITGASEDLNGRSLLKLRNGSAITYKEHFAKRRNSIQLLFDQEPL 896
Query: 893 LNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHR 952
L GR IF V N+L++CR +K+KE +LPPELC II++P+S+ST YS+TF+PSIMHR
Sbjct: 897 LEGRHIFPVHNFLNRCRTKKEKESKNAHVDLPPELCDIILSPVSISTLYSYTFIPSIMHR 956
Query: 953 LQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAAS 1012
L+SLL+AVNLK M DHCMQNV IP +KVLEAITTKKCQE FHLESLETLGDSFLKYAAS
Sbjct: 957 LESLLIAVNLKKMHSDHCMQNVDIPAMKVLEAITTKKCQEKFHLESLETLGDSFLKYAAS 1016
Query: 1013 QQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGS 1072
QQLFK YQN+HEGLLS+KKE+IISNAALC+ GC+ KLPGFIR ESFDPK+W+IPGD GS
Sbjct: 1017 QQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNESFDPKLWMIPGDKCGS 1076
Query: 1073 YELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF 1132
L+++ L RKIYV GR+KVKSKTVADVVEALIGA+LSTGGE + L F+D IGIKVDF
Sbjct: 1077 DLLSEEPLSECRKIYVRGRRKVKSKTVADVVEALIGAYLSTGGEVLALFFMDWIGIKVDF 1136
Query: 1133 VNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFL 1192
+ VPY+R FQ+ AE+ VNVR+LESLLNYSFRDPSLLVEALTHGSYMLPEIP CYQRLEFL
Sbjct: 1137 MIVPYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFL 1196
Query: 1193 GDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYK 1252
GDAVLDYLIT++LY +YPG+SPG LTD+RSASVNNDCYA S+VK LHKHILH S +L+K
Sbjct: 1197 GDAVLDYLITMHLYKEYPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHK 1256
Query: 1253 RINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLL 1312
I T + F+K SLGSTFGWES TSFPK LGD+IESLAGAI VDSG N+E+VFQSIRPLL
Sbjct: 1257 HIVETAEIFQKSSLGSTFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLL 1316
Query: 1313 EPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDA 1372
EP+ITP T+R HP REL+E CQK HF KK V S A++T+ V ANG F+HT A
Sbjct: 1317 EPLITPATVRLHPARELSELCQKQHFDYKKSVVSYNGRNASITIVVGANGVTFKHTATAA 1376
Query: 1373 DKKTAKKVACKEVLKSLRAS 1392
DKKTAKK+A KEVLKSL+ S
Sbjct: 1377 DKKTAKKLASKEVLKSLKES 1396
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1796 bits (4651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1403 (64%), Positives = 1105/1403 (78%), Gaps = 18/1403 (1%)
Query: 1 MEPVSMESDTTEEV--SADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRS 58
MEPV M V + D LPFAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLR
Sbjct: 1 MEPVKMIGADGNNVGQTVDPLPFARSYQIEALEKAIKQNTIVFLETGSGKTLIAIMLLRY 60
Query: 59 YAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMS 118
YA+LLRKPSPF+AVFLVPKVVLVPQQAEA+KMHTDLKVG YWGDMGVDFWD ATW++E
Sbjct: 61 YAHLLRKPSPFIAVFLVPKVVLVPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATWRKEQD 120
Query: 119 KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
KHEVLVMTP ILL+GLR S+FKL+MIKVLI DECHHARGK YACIM EFYH + + +S
Sbjct: 121 KHEVLVMTPAILLNGLRHSFFKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNS 180
Query: 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFK 238
NLPRIFGMTASPIK+K ++ + + + +LE LMNSK+YT SE+VL+ F+PFST K
Sbjct: 181 NLPRIFGMTASPIKTK-GVNDLMHSKNMIELENLMNSKIYTSVSEAVLAEFVPFSTPKLT 239
Query: 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSE 298
YK +IP AL+ ++A +L +++ K+ SLE+L+L E+ E RKK+SK+ S L+CL++
Sbjct: 240 HYKDKDIPSALFENVAHQLEILKNKYEHSLESLNLMESTKESARKKISKLFSAFLFCLND 299
Query: 299 LGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDD 358
LG+WLALKAAE C + D W QLD GE IIK F DA + + TY+PS E S+GDD
Sbjct: 300 LGLWLALKAAEFSFCDDMDICCWGQLDLSGEEIIKNFNKDAYKVISTYLPSDRELSVGDD 359
Query: 359 SKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWK 418
+ + +SG LT K++CL+ SLL+YR ++++RCI+FVERVITAIVLQ LLS+LLP+ W+
Sbjct: 360 LEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPKLSGWE 419
Query: 419 TKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478
YIAGN S +Q QSR+ QN +VEEFR+G+VNVIV+TSILEEGLDVQSCNLVI FDPS T
Sbjct: 420 AGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSAT 479
Query: 479 VCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNN 538
VCSFIQSRGRARMQNSDYLLMVKSGD T SRL YL SG MR+E L +ASLPC+PL +
Sbjct: 480 VCSFIQSRGRARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKS 539
Query: 539 HMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPN 598
+ E+FY VEST I TLSSS+ L+YFYCSRLPSDGYFKPTP+ IN++MG CT+Y P
Sbjct: 540 SLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTPRCSINQDMGTCTIYHPK 599
Query: 599 NCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAE 658
+CPIQTV +GNIKTLKQ ACLEACK+LH+ GALTDNL+P IV E+ + N PY+ E
Sbjct: 600 SCPIQTVSVRGNIKTLKQIACLEACKELHKAGALTDNLVPQIVEEEAIVAQDENMPYDDE 659
Query: 659 HPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDL 718
Y+PPEL+N S +D YHCYLIEL Q + Y++S + IVLA+R+ELE ++ VNFDL
Sbjct: 660 QATYYPPELINPSLKDPVTPYHCYLIELDQKYEYEVSPQGIVLAVRSELEYDVGNVNFDL 719
Query: 719 EVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLE 778
+V+RG +TV++ ++G I L QVL+CR+FQITL RV++D +DK + D ++L ++
Sbjct: 720 QVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDRAIDK--GVFDRYDLGNDQM 777
Query: 779 IDYLLLPSTG-----QLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCK 833
+DYL+LPST ++DWK + +V F +N S H M C F R+ HTKSG +C+C
Sbjct: 778 VDYLMLPSTNSREIPSIVDWKCLGSVFFSHENASNH-MGC---FFPRM-HTKSGFVCSCT 832
Query: 834 IHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLL 893
+ NS+V TPH Q YCITG+LG LN NS + NG + TYK++Y R+GI+L FD E LL
Sbjct: 833 LKNSIVYTPHTSQFYCITGILGELNGNSFLSLKNGGLLTYKEYYRLRHGIELQFDGEKLL 892
Query: 894 NGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
GRR+F VQNYL +CRQQK+KE S + ELPPELC I M+PIS+S YSF+ +PSIMHR+
Sbjct: 893 KGRRMFVVQNYLQRCRQQKEKELSNTTVELPPELCVIFMSPISISIIYSFSLIPSIMHRI 952
Query: 954 QSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQ 1013
+SLLLAVNLKN+ L++C QN IPT KVLEAITTK CQE FHLESLETLGDSFLKYAASQ
Sbjct: 953 ESLLLAVNLKNIHLNYCKQN-DIPTFKVLEAITTKHCQEGFHLESLETLGDSFLKYAASQ 1011
Query: 1014 QLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSY 1073
QLFKT+QN+HEGLLSVKKERIISNA+LCKLGC++KLPGFIR ESFDPK WII GD S S+
Sbjct: 1012 QLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAGDQSRSH 1071
Query: 1074 ELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFV 1133
++ L + RKIYV+ R+K+KSK +ADVVEALIGAFLSTGGE LIF+ +GI VDFV
Sbjct: 1072 VFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINVDFV 1131
Query: 1134 NVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLG 1193
VPY+R F V +R VNV +LES+LNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLG
Sbjct: 1132 KVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLG 1191
Query: 1194 DAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKR 1253
DAVLDYL+T++LY+KYPG+SPG LTD+RSASVNNDCYA S+VK LH+HILH+S EL++
Sbjct: 1192 DAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRH 1251
Query: 1254 INITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLE 1313
I +TV +F+KL + STFGWES +SFPK LGD+IESLAGAI VDS N+EVVFQSIRPLLE
Sbjct: 1252 IVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLE 1311
Query: 1314 PMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDAD 1373
P+ITPET++ HP REL E CQK H+ +K+ V S+ +GKA+VT+EV+ANG +HT +D
Sbjct: 1312 PLITPETVKLHPARELGELCQKEHYDIKRVVVSQ-NGKASVTIEVEANGAKHKHTS-TSD 1369
Query: 1374 KKTAKKVACKEVLKSLRASFPGT 1396
K+TA K+A KEVLKSL+ S T
Sbjct: 1370 KRTATKLASKEVLKSLKESIAQT 1392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1776 bits (4600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1397 (62%), Positives = 1099/1397 (78%), Gaps = 18/1397 (1%)
Query: 5 SMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR 64
+ME++ E++ AD L FAR+YQLE LE ALKQNT+VFLETGSGKTLIAIMLLRS+A+ LR
Sbjct: 4 NMETEN-EQLVADPLSFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLR 62
Query: 65 KPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLV 124
KPSPFVAVFLVP+VVLV QQAEA+KMHTDL VG Y+GDMGVDFWDGA WK E+ KHEVLV
Sbjct: 63 KPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLV 122
Query: 125 MTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIF 184
MTP ILL+GLR S+F+L+MIKVLILDECHHARGKH YACIMTEFYH+ L G S+LPRIF
Sbjct: 123 MTPAILLNGLRHSFFRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPRIF 182
Query: 185 GMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDE 244
GMTASPIKSK +SE +YWQ I +LE+L+NSKVYT +SES L+NF+P ST KFKFY +
Sbjct: 183 GMTASPIKSKGGNSELNYWQYIQELESLLNSKVYTVSSESELANFVPISTPKFKFYIRKD 242
Query: 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLA 304
IP+ALY LA+ L +++ KH +SLEN DLN + E RK++SK L+YCL ELG+WL
Sbjct: 243 IPYALYEQLANALKVLKSKHEQSLENSDLNPSNVEPTRKRISKAFLALMYCLDELGLWLT 302
Query: 305 LKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEW-SIGDDSKFNL 363
KAAE++S E DF WE LD FGE I+K F SDA + L V SG + SIGD+ + ++
Sbjct: 303 WKAAESLSWMEDDFSPWETLDIFGEAIVKSFCSDALKLLANPVKSGCSYGSIGDNLEADM 362
Query: 364 DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIA 423
+GL+T K+VCLI SLLEYR +EDIRCI+FVER+++A+ LQ+LLS LLP++ WKTKYIA
Sbjct: 363 AAGLMTPKVVCLIASLLEYRSIEDIRCIVFVERIVSAVALQTLLSLLLPKYTCWKTKYIA 422
Query: 424 GNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFI 483
G+ SG+Q QS+KKQNEIVEEFR G VN+IVATSILEEGLDVQSCNLVI FDPS TVCSFI
Sbjct: 423 GSTSGLQTQSKKKQNEIVEEFRCGKVNIIVATSILEEGLDVQSCNLVIRFDPSSTVCSFI 482
Query: 484 QSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGE 543
QSRGRARM+NSDY+LMVKSGDSTT SRL+ YLASG MR E L HASLPC P + Y E
Sbjct: 483 QSRGRARMKNSDYILMVKSGDSTTLSRLQRYLASGEIMRNESLCHASLPCVPFRSD-YDE 541
Query: 544 DFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQ 603
+ Y+VESTG + TLSSSV LIYFYCSRLPSD YFKPTP++ +KE CTL+LP + P+Q
Sbjct: 542 ESYYVESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRW--DKET--CTLHLPKSSPLQ 597
Query: 604 TVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIYF 663
T ++ + K KQ ACLEACK+LH+ GALTDNL+P IV E+ AQ+ GN+P + E PIY
Sbjct: 598 TFSSKDDAKYSKQRACLEACKQLHKCGALTDNLVPQIVAEESVAQEIGNKPLDDEQPIYV 657
Query: 664 PPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERG 723
PPE V+ P ++ + YHCYLIELKQ+F+YDISA NIVLAMRTELE E++ + DL+V+RG
Sbjct: 658 PPEFVHCCPHNSSVVYHCYLIELKQNFHYDISAHNIVLAMRTELEFEVQSMCHDLDVDRG 717
Query: 724 RLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHN----LDKLNEILDGFELRDNLEI 779
VN K++G I+L P QVLL R+FQ T+F+V+++H L + NEI G D +
Sbjct: 718 SFDVNFKYVGIIKLSPEQVLLSRQFQRTIFKVLLNHTWTNKLSENNEICLG----DGPRV 773
Query: 780 DYLLLPSTG-QLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSL 838
DYLLLPSTG +LI W+ V +VL H S+ + V TKSG +C C++ NS+
Sbjct: 774 DYLLLPSTGGELISWEIVLSVLVSSQEYCVHRGISSSKDVSYDVPTKSGLVCICRLQNSV 833
Query: 839 VCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRI 898
V TPHNG +YCIT VL LN NSL + YK++Y+ R+GI L F+++PLL G++I
Sbjct: 834 VYTPHNGHVYCITSVLSELNGNSLLKIRKNEMMAYKEYYKVRHGIDLRFEKQPLLRGKKI 893
Query: 899 FHVQNYLSKCRQQKQKEPSKISF-ELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLL 957
F V NY+ + R+ K++ S+ S ELPPELC IIM+PIS++T YS++F+P IMHRL+S+L
Sbjct: 894 FPVHNYIKRFRKHKEQGESRNSLVELPPELCSIIMSPISVNTLYSYSFLPFIMHRLESML 953
Query: 958 LAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFK 1017
+A NLK + DHCMQN IPT KVLEAITTKKCQE F+LESLETLGDSFLKYA Q LF+
Sbjct: 954 IASNLKKLNSDHCMQN-DIPTTKVLEAITTKKCQEKFNLESLETLGDSFLKYATGQHLFR 1012
Query: 1018 TYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELND 1077
T+QN+HEGLL++KK+RI+SNAAL + GCE K+ GFIR E+FDP+ W IPGD Y+L +
Sbjct: 1013 TFQNDHEGLLTLKKDRIVSNAALRRRGCEHKISGFIRDEAFDPQNWDIPGDTHEVYQLRE 1072
Query: 1078 DSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPY 1137
+ LF+GRK+YV ++K+KSK +ADVVEALIGA+LSTGGE + FL+RIGI+V+F VPY
Sbjct: 1073 EVLFSGRKVYVQRKRKIKSKRIADVVEALIGAYLSTGGEKAAMQFLNRIGIEVNFDFVPY 1132
Query: 1138 QRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVL 1197
+R F+V +L+NV HLESLL Y+F D SLL+EA+THGSYMLPEIPRCYQRLEFLGD+VL
Sbjct: 1133 ERPFRVDVHKLINVGHLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVL 1192
Query: 1198 DYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINIT 1257
DY ITV+LYNKYPG++P LTDMRSASV+NDCY+ +++K LHK ILH SH+L+K I+
Sbjct: 1193 DYAITVHLYNKYPGMTPELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHDLHKHISSA 1252
Query: 1258 VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMIT 1317
V +FE LS +T+GWES SFPK LGD+IESLAGAI+VDSG ++E+VF+SIRPLLEP+++
Sbjct: 1253 VQNFETLSSEATYGWESEISFPKVLGDVIESLAGAIYVDSGYDKEIVFRSIRPLLEPLVS 1312
Query: 1318 PETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTA 1377
PET++ HP REL E CQK ++ +KK V SR++G++ VTVEV+ NGR+F+HT + D++T
Sbjct: 1313 PETLKKHPRRELNELCQKENYKLKKTVTSRVNGRSYVTVEVEVNGRIFKHTEISLDRETG 1372
Query: 1378 KKVACKEVLKSLRASFP 1394
+KVA KEVLKSL+ ++P
Sbjct: 1373 EKVASKEVLKSLKEAYP 1389
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1730 bits (4480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/1348 (64%), Positives = 1063/1348 (78%), Gaps = 15/1348 (1%)
Query: 54 MLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113
MLLR YA+LLRKPSPF+AVFLVPKVVLVPQQAEA+KMHTDLKVG YWGDMGVDFWD ATW
Sbjct: 1 MLLRYYAHLLRKPSPFIAVFLVPKVVLVPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATW 60
Query: 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173
++E KHEVLVMTP ILL+GLR S+FKL+MIKVLI DECHHARGK YACIM EFYH +
Sbjct: 61 RKEQDKHEVLVMTPAILLNGLRHSFFKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQV 120
Query: 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFS 233
+ +SNLPRIFGMTASPIK+K ++S + + +LE LMNSK+YT SE+VL+ F+PFS
Sbjct: 121 RSNNSNLPRIFGMTASPIKTKGTTSTWSCGKNMIELENLMNSKIYTSVSEAVLAEFVPFS 180
Query: 234 TAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLL 293
T K YK +IP AL+ ++A +L +++ K+ SLE+L+L E+ E RKK+SK+ S L
Sbjct: 181 TPKLTHYKDKDIPSALFENVAHQLEILKNKYEHSLESLNLMESTKESARKKISKLFSAFL 240
Query: 294 YCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEW 353
+CL++LG+WLALKAAE C + D W QLD GE IIK F DA + + TY+PS E
Sbjct: 241 FCLNDLGLWLALKAAEFSFCDDMDICCWGQLDLSGEEIIKNFNKDAYKVISTYLPSDREL 300
Query: 354 SIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413
S+GDD + + +SG LT K++CL+ SLL+YR ++++RCI+FVERVITAIVLQ LLS+LLP+
Sbjct: 301 SVGDDLEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPK 360
Query: 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMF 473
W+ YIAGN S +Q QSR+ QN +VEEFR+G+VNVIV+TSILEEGLDVQSCNLVI F
Sbjct: 361 LSGWEAGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRF 420
Query: 474 DPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPC 533
DPS TVCSFIQSRGRARMQNSDYLLMVKSGD T SRL YL SG MR+E L +ASLPC
Sbjct: 421 DPSATVCSFIQSRGRARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPC 480
Query: 534 SPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICT 593
+PL + + E+FY VEST I TLSSS+ L+YFYCSRLPSDGYFKPTP+ IN++MG CT
Sbjct: 481 APLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTPRCSINQDMGTCT 540
Query: 594 LYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNE 653
+Y P +CPIQTV +GNIKTLKQ ACLEACK+LH+ GALTDNL+P IV E+ + N
Sbjct: 541 IYHPKSCPIQTVSVRGNIKTLKQIACLEACKELHKAGALTDNLVPQIVEEEAIVAQDENM 600
Query: 654 PYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKK 713
PY+ E Y+PPEL+N S +D YHCYLIEL Q + Y++S + IVLA+R+ELE ++
Sbjct: 601 PYDDEQATYYPPELINPSLKDPVTPYHCYLIELDQKYEYEVSPQGIVLAVRSELEYDVGN 660
Query: 714 VNFDLEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFEL 773
VNFDL+V+RG +TV++ ++G I L QVL+CR+FQITL RV++D +DK + D ++L
Sbjct: 661 VNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDRAIDK--GVFDRYDL 718
Query: 774 RDNLEIDYLLLPSTG-----QLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGP 828
++ +DYL+LPST ++DWK + +V F +N S H M C F R+ HTKSG
Sbjct: 719 GNDQMVDYLMLPSTNSREIPSIVDWKCLGSVFFSHENASNH-MGC---FFPRM-HTKSGF 773
Query: 829 LCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFD 888
+C+C + NS+V TPH Q YCITG+LG LN NS + NG + TYK++Y R+GI+L FD
Sbjct: 774 VCSCTLKNSIVYTPHTSQFYCITGILGELNGNSFLSLKNGGLLTYKEYYRLRHGIELQFD 833
Query: 889 REPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPS 948
E LL GRR+F VQNYL +CRQQK+KE S + ELPPELC I M+PIS+S YSF+ +PS
Sbjct: 834 GEKLLKGRRMFVVQNYLQRCRQQKEKELSNTTVELPPELCVIFMSPISISIIYSFSLIPS 893
Query: 949 IMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLK 1008
IMHR++SLLLAVNLKN+ L++C QN IPT KVLEAITTK CQE FHLESLETLGDSFLK
Sbjct: 894 IMHRIESLLLAVNLKNIHLNYCKQN-DIPTFKVLEAITTKHCQEGFHLESLETLGDSFLK 952
Query: 1009 YAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGD 1068
YAASQQLFKT+QN+HEGLLSVKKERIISNA+LCKLGC++KLPGFIR ESFDPK WII GD
Sbjct: 953 YAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAGD 1012
Query: 1069 NSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGI 1128
S S+ ++ L + RKIYV+ R+K+KSK +ADVVEALIGAFLSTGGE LIF+ +GI
Sbjct: 1013 QSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGI 1072
Query: 1129 KVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQR 1188
VDFV VPY+R F V +R VNV +LES+LNYSFRDPSLLVEALTHGSYMLPEIPRCYQR
Sbjct: 1073 NVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQR 1132
Query: 1189 LEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASH 1248
LEFLGDAVLDYL+T++LY+KYPG+SPG LTD+RSASVNNDCYA S+VK LH+HILH+S
Sbjct: 1133 LEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQ 1192
Query: 1249 ELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSI 1308
EL++ I +TV +F+KL + STFGWES +SFPK LGD+IESLAGAI VDS N+EVVFQSI
Sbjct: 1193 ELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSI 1252
Query: 1309 RPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHT 1368
RPLLEP+ITPET++ HP REL E CQK H+ +K+ V S+ +GKA+VT+EV+ANG +HT
Sbjct: 1253 RPLLEPLITPETVKLHPARELGELCQKEHYDIKRVVVSQ-NGKASVTIEVEANGAKHKHT 1311
Query: 1369 FLDADKKTAKKVACKEVLKSLRASFPGT 1396
+DK+TA K+A KEVLKSL+ S T
Sbjct: 1312 S-TSDKRTATKLASKEVLKSLKESIAQT 1338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1399 (60%), Positives = 1065/1399 (76%), Gaps = 30/1399 (2%)
Query: 3 PVSMESDTTEE---VSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
PV M+S+T ++ +SAD L FAR+YQLEAL+NA+++NTIV+LETGSGKTLIA+MLLRSY
Sbjct: 6 PVEMDSNTQQQQKVISADVLSFARSYQLEALDNAIRENTIVYLETGSGKTLIAVMLLRSY 65
Query: 60 AYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK 119
A+ LRKPSP +AVFLVPKVVLV QQAEA+K HTDLKVG YWGDMG+DFWD ATWK+E+ K
Sbjct: 66 AHHLRKPSPQIAVFLVPKVVLVSQQAEAVKKHTDLKVGLYWGDMGIDFWDAATWKQEVQK 125
Query: 120 HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN 179
+EV VMTP ILL+ LR S+ KLN+IKVLI+DECHHARGKH YA IMTEFYH L +G S+
Sbjct: 126 YEVFVMTPAILLNCLRHSFLKLNLIKVLIMDECHHARGKHPYASIMTEFYHHQLNSGISD 185
Query: 180 LPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKF 239
LPRIFGMTASPIKSKV + E + + I L TLM+SKVYTC SE+VL+ FIP ST KFKF
Sbjct: 186 LPRIFGMTASPIKSKVGNCELSWSENIRKLMTLMHSKVYTCVSEAVLTEFIPTSTPKFKF 245
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSEL 299
Y+ +E+ L+ LA +L M++ +H +L++ D ++ AE R++ KI S L++CL EL
Sbjct: 246 YQGNEVQSVLFEDLAFKLKMLKEQHESNLKSSDFTKSAAEFARRRTKKIFSALIFCLDEL 305
Query: 300 GVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDS 359
GVWLALKAAE++S + F+W G+T++K F S Q L TY+P G +WSIGD+
Sbjct: 306 GVWLALKAAESLSSNDIQLFSWGH---SGDTVVKNFISAGVQTLKTYLPCGPQWSIGDNI 362
Query: 360 KFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKT 419
K++++ LL+ K+ CLI+S+LEYRG+ D+RCIIFVERVITA+VL+ LL+ LLP++ +WKT
Sbjct: 363 KYDVEMELLSSKVCCLIDSILEYRGLTDMRCIIFVERVITAVVLRDLLNTLLPKYNSWKT 422
Query: 420 KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTV 479
K+IAG N G+Q QSRKKQNEIVEEFR GLVN+IVATSILEEGLDV+SCNLVI FDP TV
Sbjct: 423 KFIAGQNFGLQNQSRKKQNEIVEEFRMGLVNIIVATSILEEGLDVESCNLVIRFDPCHTV 482
Query: 480 CSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNH 539
CSFIQSRGRARMQNSDY+LMVKSGDS T SRL YLASG+ MRKE L H+SLPC PL
Sbjct: 483 CSFIQSRGRARMQNSDYILMVKSGDSVTCSRLAKYLASGDIMRKESLRHSSLPCDPLEED 542
Query: 540 MYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNN 599
+ ++ Y V ST A LSSS+SLI+ YCSRLP+DGYFKPT ++ +KE G TLYLP +
Sbjct: 543 RFDKETYRVASTEAFANLSSSISLIHLYCSRLPADGYFKPTLRW--DKETG--TLYLPKS 598
Query: 600 CPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEH 659
CP+Q + +G+ K LK ACLEACK+LH+IGAL+DNL+PDIV+E+ + ++ GNEPY+
Sbjct: 599 CPLQPIRVEGDKKILKNIACLEACKQLHKIGALSDNLVPDIVMEEAEVEELGNEPYDENQ 658
Query: 660 PIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLE 719
P + P LVN +++ YHCY +E F+YD+S ++I L MR EL+ EI + FD+
Sbjct: 659 PTFVPFGLVNSVSNNSQTVYHCYFMEFNNKFSYDVSVQDIFLLMRIELDPEIGCMQFDMG 718
Query: 720 VERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEI 779
+RG L+VN ++ G I L P+QVLLC++FQ+T+ R+++DH+++KL LD L D+LEI
Sbjct: 719 FDRGSLSVNFRYKGTINLSPDQVLLCKKFQVTILRILIDHDMNKLTAGLDRCYLEDDLEI 778
Query: 780 DYLLLPSTGQ----LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIH 835
DYLLLP+ G+ I+W V +V N S+ S ++ + TKSG +C+CK+
Sbjct: 779 DYLLLPAMGKGKYTAINWLAVNSV-----NPSE----VSCKYHEPHIRTKSGLVCSCKLQ 829
Query: 836 NSLVCTPHN-GQI--YCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPL 892
N+LVCT H G+I Y TG + L+ NS G VTTYKK+YE+ +GIQL F+ + L
Sbjct: 830 NALVCTSHPIGKISFYIATGTM-ELDGNSPMELRGGGVTTYKKYYEQHHGIQLQFEHQRL 888
Query: 893 LNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHR 952
L R IF V+N+ +Q K+ E SK ELPPELC I+M PIS S YS++F+PSIMHR
Sbjct: 889 LKARHIFQVKNHCHGRKQGKEGEVSKAFVELPPELCSIVMMPISDSLIYSYSFIPSIMHR 948
Query: 953 LQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAAS 1012
+SLL A NLK M LDHC +N I TIKVLEAITTK+C+E FH ESLETLGDSFLKYAAS
Sbjct: 949 FESLLGAFNLKKMHLDHCARN-EIQTIKVLEAITTKRCKEAFHYESLETLGDSFLKYAAS 1007
Query: 1013 QQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGS 1072
QQLFKTY N+HEGLLS+K+E+IISNAALCKLGC LPGFIR E FDP WIIPGD S
Sbjct: 1008 QQLFKTYHNHHEGLLSLKREKIISNAALCKLGCSSGLPGFIRNEPFDPNTWIIPGDKPRS 1067
Query: 1073 YELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF 1132
++L + + G+ IYV+G++K++ K VADVVEALIGAFLSTGGE L+F+D +GIKV F
Sbjct: 1068 FKLK-ELVAKGKTIYVSGKRKLRQKIVADVVEALIGAFLSTGGEKAALLFMDWVGIKVSF 1126
Query: 1133 VNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFL 1192
+PY R F + E+LVNV LES LNYSF D SLLVEA+THGSYMLPE+PRCYQRLEFL
Sbjct: 1127 NKIPYDRHFDIQPEKLVNVSFLESQLNYSFHDRSLLVEAVTHGSYMLPEVPRCYQRLEFL 1186
Query: 1193 GDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYK 1252
GD+VLDYLIT +LYNKYPG++PG LTDMRSASVNNDCYA S++KHGLHKH+LHAS EL+
Sbjct: 1187 GDSVLDYLITWHLYNKYPGMTPGQLTDMRSASVNNDCYAWSAIKHGLHKHVLHASQELHM 1246
Query: 1253 RINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLL 1312
++ T++ F+KLS STFG+E+ TS PK LGDI+ESLAGAI VDSG N+EVV+QSIRPLL
Sbjct: 1247 HVSATLNKFDKLSSLSTFGYEAETSLPKVLGDIVESLAGAILVDSGYNKEVVWQSIRPLL 1306
Query: 1313 EPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFL-D 1371
EP++TPET++ HP+REL E CQK + + SR G +EV+A+G + ++ + D
Sbjct: 1307 EPLVTPETLKLHPIRELNELCQKRSYKIILEDVSRKDGLTYYRMEVEADGIIHKYEYKGD 1366
Query: 1372 ADKKTAKKVACKEVLKSLR 1390
A + TAKK+ CKE+L SL+
Sbjct: 1367 ALRDTAKKIVCKEILNSLK 1385
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1401 (60%), Positives = 1053/1401 (75%), Gaps = 31/1401 (2%)
Query: 2 EPVSMESDTTEE----VSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLR 57
E SME DT + ++ D LPFAR+YQLEAL A+ +NTIV+LETGSGKTLIAIMLLR
Sbjct: 37 EAPSMEMDTDSQEDQNIAPDVLPFARSYQLEALYKAIHENTIVYLETGSGKTLIAIMLLR 96
Query: 58 SYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117
SYA+ LRKPSP++AVFLVP+VVLV QQAEA+K HTDLKVG YWGDMGVDFWD ATWK+EM
Sbjct: 97 SYAHQLRKPSPYIAVFLVPQVVLVSQQAEAVKRHTDLKVGMYWGDMGVDFWDAATWKQEM 156
Query: 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD 177
KHEVLVMTP ILL LR S+FKLNMI VLI+DECHHARGKH YACIMTEFYH L++G
Sbjct: 157 EKHEVLVMTPAILLSCLRHSFFKLNMINVLIMDECHHARGKHPYACIMTEFYHHQLKSGI 216
Query: 178 SNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKF 237
S+LPRIFGMTASPIKSKV SE + + I L LM+SKVYTC SE+V++ FIP ST KF
Sbjct: 217 SDLPRIFGMTASPIKSKVGKSESSWSENIQKLMILMHSKVYTCVSEAVITEFIPTSTPKF 276
Query: 238 KFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLS 297
KFY + I L+ LA +L M++ +H +L + D ++ AE +K+++KI +L++CL
Sbjct: 277 KFYSNNGIQFVLFEELASKLKMLKEQHELTLRSSDFTKSIAESAQKRITKIFCSLMFCLD 336
Query: 298 ELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGD 357
ELGVWLALKAAE++S E + F+W G+ ++K F + AL +Y+ +WSIGD
Sbjct: 337 ELGVWLALKAAESLSSNEIESFSWGH---SGDRVVKDFILEGVHALKSYLQCDPQWSIGD 393
Query: 358 DSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTW 417
+ K ++ GLLT K+ CL++SLLEYRG+ D+RCIIFVER+ITAIVL+ LL+ LLP++ +W
Sbjct: 394 NIKSDVKMGLLTSKVCCLVDSLLEYRGLTDMRCIIFVERIITAIVLEDLLNTLLPKYNSW 453
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477
KTK+IAG N G+Q QSR KQNEIV EFR GLVN+IVATSILEEGLDVQ CNLVI FDP
Sbjct: 454 KTKFIAGYNFGLQNQSRTKQNEIVNEFRMGLVNIIVATSILEEGLDVQRCNLVIRFDPCP 513
Query: 478 TVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLN 537
TVCSFIQSRGRARM+NSDY+LMVKSGDS T SRLE YLAS + MRKE L H+SLPC P
Sbjct: 514 TVCSFIQSRGRARMRNSDYILMVKSGDSVTCSRLEKYLASADIMRKESLRHSSLPCDPFE 573
Query: 538 NHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLP 597
+ ++ YHV STG IA LSSS+SLIY YCSRLP+DGYFKP P++ +KE G TLYLP
Sbjct: 574 GDEFDKEAYHVSSTGAIANLSSSISLIYLYCSRLPADGYFKPAPRW--DKETG--TLYLP 629
Query: 598 NNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNA 657
+CP+Q + +GN K LK ACLEACK+LH+IGALTDNL+PDIV+E+ + ++ GNEPY+
Sbjct: 630 KSCPLQPICVEGNKKHLKNIACLEACKQLHKIGALTDNLVPDIVIEEAEVEEFGNEPYDE 689
Query: 658 EHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFD 717
P + P LVN ++ YHCYL+EL Q+F+YDIS ++I LA+R EL+ EI FD
Sbjct: 690 NQPTFVPFGLVNSVSNNSHTIYHCYLMELSQNFSYDISVQDIFLAIRIELDPEIGCTQFD 749
Query: 718 LEVERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNL 777
+ +RG +++ L++ G I L PN VLLC++FQ+TL I+DH+++KL LD L DN+
Sbjct: 750 MGFDRGSVSLKLRYKGTINLSPNLVLLCKKFQVTLLGSIIDHSMNKLATSLDKCYLEDNV 809
Query: 778 EIDYLLLPSTGQ----LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCK 833
EIDYLLLP+ G+ ++W + +V + C ++ + TKSG +CTCK
Sbjct: 810 EIDYLLLPAIGKGEKSHVNWLAIKSV-------EPSSFTCK--YHQPHIETKSGLVCTCK 860
Query: 834 IHNSLVCTPHNGQ---IYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDRE 890
+ ++LVCT H G Y TG++ L+ NS G VTTYKK+YE+ +GIQL F+ +
Sbjct: 861 LQDALVCTSHPGGKIYFYITTGIM-ELHGNSPMELRGGEVTTYKKYYEQHHGIQLQFENQ 919
Query: 891 PLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIM 950
LL R F V+NY +Q K E SK ELPPELC I+M+PI S Y+F+F+PSIM
Sbjct: 920 WLLKARHHFKVKNYCHGQKQGKDGEASKAFVELPPELCSIVMSPIKDSIIYTFSFIPSIM 979
Query: 951 HRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYA 1010
HRL+SLL A NLK M LDHC QN I TIKVLEAITTK+C E FH ESLETLGDSFLKYA
Sbjct: 980 HRLESLLGAFNLKKMHLDHCTQN-EIQTIKVLEAITTKRCNEAFHYESLETLGDSFLKYA 1038
Query: 1011 ASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNS 1070
ASQQLFKTY+N+HEGLLSVK+E+IISNAALCKLGC LPGFIR E FDP W IPGD
Sbjct: 1039 ASQQLFKTYKNHHEGLLSVKREKIISNAALCKLGCSSGLPGFIRNEPFDPHAWTIPGDKP 1098
Query: 1071 GSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
S +L ++ + G+KIYV G++K+ K +ADVVEALIGAFLSTGGE L+F+D +GIKV
Sbjct: 1099 ESLKL-EELVIKGKKIYVHGKRKLNRKIIADVVEALIGAFLSTGGEISALLFMDWVGIKV 1157
Query: 1131 DFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLE 1190
F +PY+R F + E+L+NVR LES L YSF D SLLVEALTHGSYMLPE+PRCYQRLE
Sbjct: 1158 SFDKIPYERHFDIQPEKLLNVRFLESQLKYSFHDHSLLVEALTHGSYMLPEVPRCYQRLE 1217
Query: 1191 FLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL 1250
FLGD+VLDYLIT +LYN+YPG+SPG LTDMR+ASVNNDCYA S++KHGLHKH+LHAS EL
Sbjct: 1218 FLGDSVLDYLITWHLYNEYPGMSPGQLTDMRAASVNNDCYAWSAIKHGLHKHVLHASQEL 1277
Query: 1251 YKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310
+K I +T+++F+KLS STFG+ES S PK LGDIIESLAGAI VDSG N+EVV+QSIRP
Sbjct: 1278 HKHIAVTLNNFDKLSSSSTFGYESEASPPKVLGDIIESLAGAILVDSGFNKEVVWQSIRP 1337
Query: 1311 LLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFL 1370
LLEP++TPET++ HP+REL E CQK + + SR G ++V+A+G + E+ +
Sbjct: 1338 LLEPLVTPETLKLHPIRELNELCQKRSYKIVLEDVSRKDGVTNYRMKVEADGVIHEYEYT 1397
Query: 1371 D-ADKKTAKKVACKEVLKSLR 1390
A + TAKK+ACKE+L SL+
Sbjct: 1398 GPALRDTAKKIACKEILNSLK 1418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145338056|ref|NP_566199.4| protein dicer-like 2 [Arabidopsis thaliana] gi|334185051|ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana] gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1686 bits (4366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1397 (59%), Positives = 1046/1397 (74%), Gaps = 17/1397 (1%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
M+ +ME++TT++VSA L FAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 3 MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYA 62
Query: 61 YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YL RKPSP VFLVP+VVLV QQAEA+KMHTDLKVG YWGDMGVDFWD +TWK+E+ K+
Sbjct: 63 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 122
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTP ILLD LR S+ L+MIKVLI+DECHHA GKH YACIM EFYH+ L +G SN+
Sbjct: 123 EVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNV 182
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS +K+K + YW+KIH+LETLMNSKVYTC +ESVL+ F+PFST FK+Y
Sbjct: 183 PRIFGMTASLVKTK-GENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
++ +IP L ++L + +KH SL LDLN + + + K++ +I+STL YCL +LG
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLG 301
Query: 301 VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK 360
+ LA KAA+++S ++D F W +L+ F ++KKF SDASQ + +P G WS+ + +
Sbjct: 302 ILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANING 361
Query: 361 FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
N ++GLLT K VCLIE+LL Y +E+IRCIIFV+RVITAIVL+SLL+E+LP WKTK
Sbjct: 362 -NAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTK 420
Query: 421 YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480
Y+AGNNSG+Q Q+RKKQNEIVE+FRRGLVN+IVATSILEEGLDVQSCNLVI FDP+ +C
Sbjct: 421 YVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNIC 480
Query: 481 SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM 540
SFIQSRGRARMQNSDYL+MV+SGD TQSRL YL+ G +MR+E L H+ +PC PL +
Sbjct: 481 SFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDS 540
Query: 541 YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC 600
E + VESTG TLSSSVSLIY YCSRLPSD YFKP P+F +NK+ G CTLYLP +C
Sbjct: 541 -DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSC 599
Query: 601 PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP 660
P++ V A+ N K LKQA CL+AC +LH++GAL+D+L+PD+VV + +QK YN E P
Sbjct: 600 PVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQP 659
Query: 661 IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
YFPPELV+Q + TYH YLI +K + + +++L R LE +I +F LE
Sbjct: 660 CYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLED 719
Query: 721 ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID 780
RG + V L ++G L +VL CRRFQITLFRV++DH+++ L E L+G LRD + +D
Sbjct: 720 HRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALD 779
Query: 781 YLLLPST----GQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHN 836
YLL+PST LIDW+ + +V + + NCST +RI+HTK G CTC + N
Sbjct: 780 YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHENCSTNGASRILHTKDGLFCTCVVQN 839
Query: 837 SLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGR 896
+LV TPHNG +YC GVL +LN NSL T+ N TY ++YEER+GIQL F EPLLNGR
Sbjct: 840 ALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNGR 899
Query: 897 RIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSL 956
IF + +YL +++K+KE + ELPPELC +I++PIS+ YS+TF+PS+M R++SL
Sbjct: 900 HIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIESL 959
Query: 957 LLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLF 1016
L+A NLK + V IPTIKVLEAITTKKC++ FHLESLETLGDSFLKYA QQLF
Sbjct: 960 LIAYNLKK-----SIPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLF 1014
Query: 1017 KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELN 1076
+ +HEGLLS KK+ +ISN LC+ GC+QKL GFIR E F+PK W++PG +S +Y L
Sbjct: 1015 QHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLV 1074
Query: 1077 DDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVP 1136
+D+L R IYV R+ +K K+VADVVE+LIGA+LS GGE L+F++ +GIKVDF
Sbjct: 1075 NDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTK 1134
Query: 1137 YQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAV 1196
QR + AE+LVNV ++ESLLNYSF D SLLVEALTHGSYM+PEIPRCYQRLEFLGD+V
Sbjct: 1135 IQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSV 1194
Query: 1197 LDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINI 1256
LDYLIT +LY+KYP LSPG LTDMRSASVNN+CYAL +VK LHKHIL+ASH L+K I+
Sbjct: 1195 LDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISR 1254
Query: 1257 TVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
TV FE+ SL STFGWES SFPK LGD+IESLAGAIFVDSG N+EVVF SI+PLL MI
Sbjct: 1255 TVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMI 1314
Query: 1317 TPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKT 1376
TPET++ HPVRELTE CQK F + S+ + TVEV+A F HT +DKK
Sbjct: 1315 TPETVKLHPVRELTELCQKWQFEL-----SKAKDFDSFTVEVKAKEMSFAHTAKASDKKM 1369
Query: 1377 AKKVACKEVLKSLRASF 1393
AKK+A KEVL L+ S
Sbjct: 1370 AKKLAYKEVLNLLKNSL 1386
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1682 bits (4355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1397 (59%), Positives = 1045/1397 (74%), Gaps = 17/1397 (1%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
M+ +ME++TT++VSA L FAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 1 MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYA 60
Query: 61 YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YL RKPSP VFLVP+VVLV QQAEA+KMHTDLKVG YWGDMGVDFWD +TWK+E+ K+
Sbjct: 61 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 120
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTP ILLD LR S+ L+MIKVLI+DECHHA GKH YACIM EFYH+ L +G SN+
Sbjct: 121 EVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNV 180
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS +K+K + YW+KIH+LETLMNSKVYTC +ESVL+ F+PFST FK+Y
Sbjct: 181 PRIFGMTASLVKTK-GENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 239
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
++ +IP L ++L + +KH SL LDLN + + + K++ +I+STL YCL +LG
Sbjct: 240 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLG 299
Query: 301 VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK 360
+ LA KAA+++S ++D F W +L+ F ++KKF SDASQ + +P G WS+ + +
Sbjct: 300 ILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANING 359
Query: 361 FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
N ++GLLT K VCLIE+LL Y +E+IRCIIFV+RVITAIVL+SLL+E+LP WKTK
Sbjct: 360 -NAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTK 418
Query: 421 YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480
Y+AGNNSG+Q Q+RKKQNEIVE+FRRGLVN+IVATSILEEGLDVQSCNLVI FDP+ +C
Sbjct: 419 YVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNIC 478
Query: 481 SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM 540
SFIQSRGRARMQNSDYL+MV+SGD TQSR YL+ G +MR+E L H+ +PC PL +
Sbjct: 479 SFIQSRGRARMQNSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHSLVPCPPLPDDS 538
Query: 541 YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC 600
E + VESTG TLSSSVSLIY YCSRLPSD YFKP P+F +NK+ G CTLYLP +C
Sbjct: 539 -DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSC 597
Query: 601 PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP 660
P++ V A+ N K LKQA CL+AC +LH++GAL+D+L+PD+VV + +QK YN E P
Sbjct: 598 PVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQP 657
Query: 661 IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
YFPPELV+Q + TYH YLI +K + ++ +++L R LE +I +F LE
Sbjct: 658 CYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNLHLNDVLLGTRVVLEDDIGNTSFRLED 717
Query: 721 ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID 780
RG + V L ++G L +VL CRRFQITLFRV++DH+++ L E L+G LRD + +D
Sbjct: 718 HRGTIAVTLSYVGAFHLTREEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALD 777
Query: 781 YLLLPST----GQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHN 836
YLL+PST LIDW+ + +V + + NCST +RI+HTK G CTC + N
Sbjct: 778 YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHENCSTNGASRILHTKDGLFCTCVVQN 837
Query: 837 SLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGR 896
+LV TPHNG +YC GVL +LN NSL T+ N TY ++YEER+GIQL F EPLLNGR
Sbjct: 838 ALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNGR 897
Query: 897 RIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSL 956
IF + +YL +++K+KE + ELPPELC +I++PIS+ YS+TF+PS+M R++SL
Sbjct: 898 HIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIESL 957
Query: 957 LLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLF 1016
L+A NLK + V IPTIKVLEAITTKKC++ FHLESLETLGDSFLKYA QQLF
Sbjct: 958 LIAYNLKK-----SIPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLF 1012
Query: 1017 KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELN 1076
+ +HEGLLS KK+ +ISN LC+ GC+QKL GFIR E F+PK W++PG +S +Y L
Sbjct: 1013 QHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLV 1072
Query: 1077 DDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVP 1136
+D+L R IYV R+ +K K+VADVVE+LIGA+LS GGE L+F++ +GIKVD
Sbjct: 1073 NDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDLTTTK 1132
Query: 1137 YQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAV 1196
QR + AE+LVNV ++ESLLNYSF D SLLVEALTHGSYM+PEIPRCYQRLEFLGD+V
Sbjct: 1133 IQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSV 1192
Query: 1197 LDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINI 1256
LDYLIT +LY+KYP LSPG LTDMRSASVNN+CYAL +VK LHKHIL+ASH L+K I+
Sbjct: 1193 LDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISR 1252
Query: 1257 TVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
TV FE+ SL STFGWES SFPK LGD+IESLAGAIFVDSG N+EVVF SI+PLL MI
Sbjct: 1253 TVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMI 1312
Query: 1317 TPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKT 1376
TPET++ HPVRELTE CQK F + S+ + TVEV+A F HT +DKK
Sbjct: 1313 TPETVKLHPVRELTELCQKWQFEL-----SKAKDFDSFTVEVKAKEMSFAHTAKASDKKM 1367
Query: 1377 AKKVACKEVLKSLRASF 1393
AKK+A KEVL L+ S
Sbjct: 1368 AKKLAYKEVLNLLKNSL 1384
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1396 | ||||||
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.987 | 0.992 | 0.589 | 0.0 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.494 | 0.416 | 0.309 | 2.1e-174 | |
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.193 | 0.143 | 0.431 | 7.5e-155 | |
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.550 | 0.451 | 0.321 | 7.3e-126 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.168 | 0.122 | 0.399 | 6.7e-105 | |
| UNIPROTKB|E9PU15 | 1908 | Dicer1 "Protein Dicer1" [Rattu | 0.169 | 0.124 | 0.396 | 1.8e-104 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.169 | 0.123 | 0.396 | 1.8e-104 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.169 | 0.123 | 0.396 | 1.8e-104 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.169 | 0.123 | 0.396 | 4.7e-104 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.186 | 0.139 | 0.376 | 5.5e-104 |
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4199 (1483.2 bits), Expect = 0., P = 0.
Identities = 824/1397 (58%), Positives = 1029/1397 (73%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
M+ +ME++TT++VSA L FAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 3 MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYA 62
Query: 61 YLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YL RKPSP EA+KMHTDLKVG YWGDMGVDFWD +TWK+E+ K+
Sbjct: 63 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 122
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTP ILLD LR S+ L+MIKVLI+DECHHA GKH YACIM EFYH+ L +G SN+
Sbjct: 123 EVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNV 182
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS +K+K + + YW+KIH+LETLMNSKVYTC +ESVL+ F+PFST FK+Y
Sbjct: 183 PRIFGMTASLVKTKGENLDS-YWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
++ +IP L ++L + +KH SL LDLN + + + K++ +I+STL YCL +LG
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLG 301
Query: 301 VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK 360
+ LA KAA+++S ++D F W +L+ F ++KKF SDASQ + +P G WS+ + +
Sbjct: 302 ILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANING 361
Query: 361 FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
N ++GLLT K VCLIE+LL Y +E+IRCIIFV+RVITAIVL+SLL+E+LP WKTK
Sbjct: 362 -NAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTK 420
Query: 421 YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480
Y+AGNNSG+Q Q+RKKQNEIVE+FRRGLVN+IVATSILEEGLDVQSCNLVI FDP+ +C
Sbjct: 421 YVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNIC 480
Query: 481 SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM 540
SFIQSRGRARMQNSDYL+MV+SGD TQSRL YL+ G +MR+E L H+ +PC PL +
Sbjct: 481 SFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDS 540
Query: 541 YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC 600
E + VESTG TLSSSVSLIY YCSRLPSD YFKP P+F +NK+ G CTLYLP +C
Sbjct: 541 -DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSC 599
Query: 601 PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP 660
P++ V A+ N K LKQA CL+AC +LH++GAL+D+L+PD+VV + +QK YN E P
Sbjct: 600 PVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQP 659
Query: 661 IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
YFPPELV+Q + TYH YLI +K + + +++L R LE +I +F LE
Sbjct: 660 CYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLED 719
Query: 721 ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID 780
RG + V L ++G L +VL CRRFQITLFRV++DH+++ L E L+G LRD + +D
Sbjct: 720 HRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALD 779
Query: 781 YLLLPSTGQ----LIDWKTVATV-LFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIH 835
YLL+PST LIDW+ + +V L + KH NCST +RI+HTK G CTC +
Sbjct: 780 YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE-NCSTNGASRILHTKDGLFCTCVVQ 838
Query: 836 NSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNG 895
N+LV TPHNG +YC GVL +LN NSL T+ N TY ++YEER+GIQL F EPLLNG
Sbjct: 839 NALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNG 898
Query: 896 RRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQS 955
R IF + +YL +++K+KE + ELPPELC +I++PIS+ YS+TF+PS+M R++S
Sbjct: 899 RHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIES 958
Query: 956 XXXXXXXXXXXXDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQL 1015
+ V IPTIKVLEAITTKKC++ FHLESLETLGDSFLKYA QQL
Sbjct: 959 LLIAYNLKKS-----IPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQL 1013
Query: 1016 FKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYEL 1075
F+ +HEGLLS KK+ +ISN LC+ GC+QKL GFIR E F+PK W++PG +S +Y L
Sbjct: 1014 FQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSL 1073
Query: 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNV 1135
+D+L R IYV R+ +K K+VADVVE+LIGA+LS GGE L+F++ +GIKVDF
Sbjct: 1074 VNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTT 1133
Query: 1136 PYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDA 1195
QR + AE+LVNV ++ESLLNYSF D SLLVEALTHGSYM+PEIPRCYQRLEFLGD+
Sbjct: 1134 KIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDS 1193
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN 1255
VLDYLIT +LY+KYP LSPG LTDMRSASVNN+CYAL +VK LHKHIL+ASH L+K I+
Sbjct: 1194 VLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHIS 1253
Query: 1256 ITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPM 1315
TV FE+ SL STFGWES SFPK LGD+IESLAGAIFVDSG N+EVVF SI+PLL M
Sbjct: 1254 RTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCM 1313
Query: 1316 ITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKK 1375
ITPET++ HPVRELTE CQK F + K A + TVEV+A F HT +DKK
Sbjct: 1314 ITPETVKLHPVRELTELCQKWQFELSK--AKDFD---SFTVEVKAKEMSFAHTAKASDKK 1368
Query: 1376 TAKKVACKEVLKSLRAS 1392
AKK+A KEVL L+ S
Sbjct: 1369 MAKKLAYKEVLNLLKNS 1385
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 2.1e-174, Sum P(3) = 2.1e-174
Identities = 233/752 (30%), Positives = 384/752 (51%)
Query: 679 YHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLT-VNLKHLGRIQL 737
Y+ I + + Y + ++ + E E+ + DL + RGR+ +KHLG+I
Sbjct: 721 YYVKFIPIPEDRRYQMFGLFVINPLPVEAET----LQVDLHLARGRIVKAGIKHLGKIAF 776
Query: 738 IPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID---YLLLPSTGQ----- 789
+++L +FQ ++++D + + G ++ LEI+ YLLLP +
Sbjct: 777 EKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDV--TLEINSTFYLLLPIKQKCYGDR 834
Query: 790 -LIDWKTVATVLFPRDNGSKHNMNCSTMFNAR-IVHTKSGPLCTCKIHNSLVCTPHNGQI 847
+IDW V L +++ +++ + G + S+V +PHN
Sbjct: 835 FMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIF 894
Query: 848 YCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYL-S 906
+ + G+L +NA ++ ++G+ TY +H++ER+ I+L +PLL ++IF+++N L +
Sbjct: 895 FFVDGILDEINA---WSEHSGA--TYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHN 949
Query: 907 KCRQQKQKEPSKI--SF-ELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXX 963
+ + + E ++ F ELPPELC + + S S + +PS+M+RL++
Sbjct: 950 RLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELK 1009
Query: 964 XXXXDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNH 1023
+ I +LEA+TT+KC E LE E LGD+FLKY + F TY+
Sbjct: 1010 DVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLD 1069
Query: 1024 EGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGD------NSG------ 1071
EG L+ ++ +++N+ L +L +KL +IR + F+P + PG N+
Sbjct: 1070 EGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPGRPCKVVCNTDVEVRLH 1129
Query: 1072 SYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVD 1131
+++ D+ N + K +ADVVE+LIGAFL GG FL IGI VD
Sbjct: 1130 QMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVD 1189
Query: 1132 FVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEAL----THGSYML-----PEI 1182
F N P ++V +N+ SL++Y+ D + L E + H +L P
Sbjct: 1190 FNN-P--ALYRVLDSSSINL----SLMDYT--DIAGLEELIGYKFKHKGLLLQAFVHPSF 1240
Query: 1183 PR----CYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHG 1238
+ CYQRLEFLGDAVL+Y+IT YLY+ YP + PG +TD+RS +V ND A ++V+
Sbjct: 1241 SQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKS 1300
Query: 1239 LHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
+HKH++ S+ L I+ + + KLS E + PKALGDI+ES GA+ +DSG
Sbjct: 1301 IHKHLIKDSNHLTSAIS-KFEMYVKLSNSEKDLLEE-PACPKALGDIVESCIGAVLLDSG 1358
Query: 1299 CNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEV 1358
N V++ + LL+P++T M +P+REL E CQ + F + P + G+ V VEV
Sbjct: 1359 FNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEV 1418
Query: 1359 QANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
++ T + + K A+K A +E L L+
Sbjct: 1419 NIKSKIIICTAANRNSKAARKFAAQETLSKLK 1450
|
|
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 125/290 (43%), Positives = 182/290 (62%)
Query: 366 GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGN 425
G +T ++ LI+ LL+Y+ ED R IIFVERV+TA+VL +L+EL P + + G+
Sbjct: 620 GKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAEL-PSLSFIRCASLIGH 678
Query: 426 NSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQS 485
N+ + ++ + Q+ I +FR G V ++VATS+ EEGLD++ CN+VI FD ++TV ++IQS
Sbjct: 679 NNNQEMRACQMQDTI-SKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 737
Query: 486 RGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV-----LSH--ASLPCSPLNN 538
RGRAR SDY+LM++ G+ + ++ L N S +RKE LSH + SP++
Sbjct: 738 RGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDT 797
Query: 539 HMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK--EMG-----I 591
G Y VESTG + +L+S+V LI+FYCS+LPSD Y P+F + K + G
Sbjct: 798 SP-GS-MYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYS 855
Query: 592 CTLYLPNNCPIQTVIAQ--GNIKTLKQAACLEACKKLHQIGALTDNLLPD 639
C L LP N P + + +I+ +QA CL ACKKLH++GA TD LLPD
Sbjct: 856 CKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPD 905
|
|
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 7.3e-126, Sum P(2) = 7.3e-126
Identities = 265/824 (32%), Positives = 413/824 (50%)
Query: 9 DTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSP 68
D + ++ D AR YQ+E + A ++N IV+L TG GKT IA+ML+ +L+ P
Sbjct: 111 DPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKK 170
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
+ I + KV + G + + W+ E++ +EVLVMTPQ
Sbjct: 171 SVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRI-VKSHSEWEREIAANEVLVMTPQ 229
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHAR--GKHQYACIMTEFYHRLLETGDSNLPRIFGM 186
ILL L+ + K+ I +LI DECHHA+ H YA IM FY ++ PRIFGM
Sbjct: 230 ILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFY----KSESLQRPRIFGM 285
Query: 187 TASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246
TASP+ K S ++ + I+ LE L+N+KVY+ S L F+ K +Y+ +
Sbjct: 286 TASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYR-SALS 344
Query: 247 HALYTHLADELAMIELKHT--RSLENL-DLNEAQAELIRKKVSK-INSTLLYCLSELGVW 302
A + + E + ++K SL+ L D ++ Q L K++ K + L+Y L LG+W
Sbjct: 345 DASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLW 404
Query: 303 LALKAAETISCYESDFFAWEQLDGFG--ETIIKKFGSDASQALVTYVPSGAEWSIGDD-- 358
A++AA+ I SD ++ G I + S A++AL + V S D
Sbjct: 405 GAIQAAK-IQL-NSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENAS---DLL 459
Query: 359 SKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL-LPRHCTW 417
S L L + K+V LI+ L +R ++CIIFV R++TA L +L+ L L R +W
Sbjct: 460 SLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLR--SW 517
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477
K+ ++ G +SG++ SR+ I++ F+ +N++VAT + EEGLD+Q+C LVI +D
Sbjct: 518 KSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 577
Query: 478 TVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLN 537
TV SFIQSRGRARM S+Y +V SG+ +EN+ + ++M E+ +S P
Sbjct: 578 TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCP-- 635
Query: 538 NHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK--EMG--ICT 593
E+ Y V TG + SS+SL+Y YCSRLP D +F+P P+F E G IC
Sbjct: 636 --RLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICR 693
Query: 594 LYLPNNCPIQTVIAQ--GNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRG 651
+ LP N PI + + + + K+ ACL+A +LH +G L D LLPD E D
Sbjct: 694 ITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDD 753
Query: 652 NEPYN-------AEHPIYFP--PELVNQS--PQDTKITYHCYLIELKQHFNYDISARNIV 700
++ + +Y P L Q P + + H Y I H D +
Sbjct: 754 EFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPH-PADRIYKKFG 812
Query: 701 LAMRTELESEIKKVNFDLEVERGR-LTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDH 759
M++ L E + ++ DL + R ++V + G + +++ L FQ +V+ +
Sbjct: 813 FFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFER 872
Query: 760 NLDKLNEILDGFELRDNLEID----YLLLPSTGQLIDWKTVATV 799
+ + + + EL+D+ YLLLP L D ++V +V
Sbjct: 873 G-ELIPDFVP-LELQDSSRTSKSTFYLLLPLC--LHDGESVISV 912
|
|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 101/253 (39%), Positives = 139/253 (54%)
Query: 1155 ESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSP 1214
E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY SP
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 1215 GYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGSTF 1270
G LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 1271 GW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF 1323
E PKA+GDI ESLAGAI++DSG + EVV+Q P+++P+I +
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 1324 --HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVA 1381
PVREL E + + P GK VTVEV G+ F+ + + AK A
Sbjct: 1844 PRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKSAA 1898
Query: 1382 CKEVLKSLRASFP 1394
+ L+SL+A+ P
Sbjct: 1899 ARRALRSLKANQP 1911
|
|
| UNIPROTKB|E9PU15 Dicer1 "Protein Dicer1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1654 NFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1713
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1714 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1773
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + EVV+Q P++ P+I +
Sbjct: 1774 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1833
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1834 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1888
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1889 AAARRALRSLKANQP 1903
|
|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1847 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1901
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1902 AAARRALRSLKANQP 1916
|
|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1847 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1901
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1902 AAARRALRSLKANQP 1916
|
|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 101/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1663 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1722
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1723 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1782
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + EVV+Q P++ P+I +
Sbjct: 1783 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1842
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1843 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1897
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1898 AAARRALRSLKANQP 1912
|
|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 108/287 (37%), Positives = 155/287 (54%)
Query: 1128 IKVDFVNVPYQRQFQVH--AERLVN-----VRHLESLLNYSFRDPSLLVEALTHGSYMLP 1180
++ ++ +P + F+ H AER +N + ES +NY+F++ + L++A TH SY
Sbjct: 1580 LQYGWLKIPPRCMFE-HPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYN 1638
Query: 1181 EIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLH 1240
I CYQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+ H
Sbjct: 1639 TITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYH 1698
Query: 1241 KHILHASHELYKRIN----ITVDSFEKLSLGSTFGW-------ESVTSFPKALGDIIESL 1289
K+ S EL+ I+ ++ E + S E PKA+GDI ESL
Sbjct: 1699 KYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESL 1758
Query: 1290 AGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF--HPVRELTEYCQKNHFSMKKPVASR 1347
AGAI++DSG + E V+Q P++ P+I + PVREL E + + P
Sbjct: 1759 AGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLE--MEPETAKFSPAERT 1816
Query: 1348 ISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394
GK VTVEV G+ F+ + + AK A + L+SL+A+ P
Sbjct: 1817 YDGKVRVTVEVVGKGK-FKG--VGRSYRIAKSAAARRALRSLKANQP 1860
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3EBC8 | DCL2_ARATH | 3, ., 1, ., 2, 6, ., - | 0.5998 | 0.9885 | 0.9942 | yes | no |
| Q69LX2 | DCL2B_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.4543 | 0.9412 | 0.9542 | yes | no |
| Q10HL3 | DCL2A_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.4699 | 0.9691 | 0.9595 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1396 | |||
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 4e-41 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 4e-39 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 8e-34 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 2e-33 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 9e-33 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 9e-31 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-28 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 3e-26 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 3e-24 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 1e-23 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-20 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 8e-19 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-17 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 2e-16 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-16 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 7e-16 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 5e-15 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 6e-15 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 3e-14 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-13 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-13 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 3e-11 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 6e-11 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 8e-11 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 3e-10 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 6e-10 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 8e-10 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-09 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 3e-09 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 6e-09 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 9e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 9e-07 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 1e-06 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 1e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-06 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 2e-05 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-05 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-05 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 5e-05 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 6e-05 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 7e-05 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 8e-05 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 3e-04 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-04 | |
| COG0556 | 663 | COG0556, UvrB, Helicase subunit of the DNA excisio | 5e-04 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 7e-04 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 0.001 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 0.001 | |
| TIGR00631 | 655 | TIGR00631, uvrb, excinuclease ABC, B subunit | 0.003 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 0.004 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 4e-41
Identities = 138/493 (27%), Positives = 215/493 (43%), Gaps = 67/493 (13%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R YQL AL +NT+V L TG GKT IA M++ A LR +FL P LV
Sbjct: 16 PRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVI---ANRLRW-FGGKVLFLAPTKPLV 71
Query: 82 PQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY 138
Q AE + T + ++ G++ + +E +K +V V TPQ++ + L+
Sbjct: 72 LQHAEFCRKVTGIPEDEIAALTGEVRPE-----EREELWAKKKVFVATPQVVENDLKAGR 126
Query: 139 FKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSS 198
L+ + +LI DE H A G + Y + + Y R + P I G+TASP S
Sbjct: 127 IDLDDVSLLIFDEAHRAVGNYAYVFVA-KEYLR-----SAKNPLILGLTASP------GS 174
Query: 199 EQDYWQKIHDLETLMNSK--VYTCASESVLSNFIPFSTAKFKFYK------YDEIPHALY 250
+ + Q++ +E L K V T V ++ K ++ K EI L
Sbjct: 175 DLEKIQEV--VENLGIEKVEVRTEEDPDV-RPYV--KKIKVEWIKVDLPEEIKEIRDLLR 229
Query: 251 THLADELAMI-ELKHTRSLENL---DLNEAQA--ELIRKKVSKINSTLLYCLSELGVWLA 304
L L + EL S + DL E + ++ K LL L+E +
Sbjct: 230 DALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEA---IK 286
Query: 305 LK-AAETISCYESDFF--AWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKF 361
L A E + F E+L+ K GS A+++L+
Sbjct: 287 LAHALELLETQGIRPFYQYLEKLEEEA----TKGGSKAAKSLLA---DPYFKRALRLLIR 339
Query: 362 NLDSGLLTEKIVCLIESLLEYRGVE-DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
+SG+ K+ L E L E D R I+F E TA + + L ++ + +
Sbjct: 340 ADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI---KARVR 396
Query: 421 YI----AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS 476
+I + G+ S+K+Q EI+++FR+G NV+VATS+ EEGLD+ +LVI ++P
Sbjct: 397 FIGQASREGDKGM---SQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPV 453
Query: 477 RTVCSFIQSRGRA 489
+ IQ +GR
Sbjct: 454 PSEIRSIQRKGRT 466
|
Length = 542 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 4e-39
Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 23/156 (14%)
Query: 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASV 1225
SLL+EALTH SY +RLEFLGDAVL+ ++T YL+ K+P LS G LT +RSA V
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 1226 NNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDI 1285
+N+ A + + GL K++ E G PK L D+
Sbjct: 61 SNETLARLARELGLGKYLRLGKGEEKSG-----------------GRLR----PKILADV 99
Query: 1286 IESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E+L GAI++D G E + + LL P+I ++
Sbjct: 100 FEALIGAIYLDGG--FEAARKFLLRLLGPLIEEISL 133
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 8e-34
Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLP-EIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
LE L Y+F+D LL +ALTH SY + +RLEFLGDAVL ++ YL+ KYP L
Sbjct: 11 LEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNL 70
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGW 1272
G L+ +R+A V+ + A + + GL ++ E +
Sbjct: 71 PEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGG------RRR--------- 115
Query: 1273 ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMIT-PETMRFH--PVREL 1329
L D E+L GAI++DSG E + I L P + + P L
Sbjct: 116 ------ESILADAFEALIGAIYLDSGL--EAARKFILKLFLPRLEEIDAGDQFKDPKTRL 167
Query: 1330 TEYCQKNHFSMKKPVASRISGKAA---VTVEVQANGRLF---EHTFLDADKKTAKKVACK 1383
E Q + + + G A TVEV G+ + KK A++ A +
Sbjct: 168 QELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRS----KKEAEQAAAE 223
Query: 1384 EVLKSL 1389
+ LK L
Sbjct: 224 QALKKL 229
|
Length = 235 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 25/153 (16%)
Query: 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASV 1225
SLL+ ALTH SY +RLEFLGDAVL+ ++T YLY KYP LS G L+ +RSA V
Sbjct: 1 SLLLRALTHASYSNEH--EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALV 58
Query: 1226 NNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDI 1285
+N+ A + K GL + I E PK L D+
Sbjct: 59 SNETLARLAKKLGLGEFIRLGRGEAIS---------------------GGRDKPKILADV 97
Query: 1286 IESLAGAIFVDSGCNREVVFQSIRPLLEPMITP 1318
E+L GAI++DSG E + IR LL P +
Sbjct: 98 FEALIGAIYLDSG--LEAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 9e-33
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 812 NCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGS-V 870
+ ST + ++H G C C + S+V PHNG+ Y I+G+L LNANS F G
Sbjct: 9 DYSTNEASDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGY 67
Query: 871 TTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSK----ISFELPPE 926
TY ++++E+YGI L +PLL G++IF++ N L ++K + K ELPPE
Sbjct: 68 ATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLHNRFEEKGESEEKEKDRYFVELPPE 127
Query: 927 LCRIIMAP 934
LC +I P
Sbjct: 128 LCSVIDLP 135
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 135 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 9e-31
Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 47/253 (18%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRC--YQRLEFLGDAVLDYLITVYLYNKYPG 1211
L+ L Y+F+DP LL++ALTH SY E +RLEFLGDAVL+ +++ YL+ ++P
Sbjct: 8 LQKKLGYTFKDPELLIQALTHRSY-ANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPD 66
Query: 1212 LSPGYLTDMRSASVNNDCYALSSV--KHGLHKHILHASHELYKRINITVDSFEKLSLGST 1269
L G L+ +R+A V + +L+ + + GL +++L L K + + S+
Sbjct: 67 LDEGDLSKLRAALVREE--SLAEIARELGLGEYLL-----LGKGEEKS-GGRRRPSI--- 115
Query: 1270 FGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR-- 1327
L D E+L GAI++D G E + I L EP I E V+
Sbjct: 116 ------------LADAFEALIGAIYLDQG--LEAARKFILRLFEPRI-EEIDLGDLVKDY 160
Query: 1328 --ELTEYCQKNHFSMKKPVASRISG-------KAAVTVEVQANGRLFEHTFLDADKKTAK 1378
L E Q + + + G VTV + G + KK A+
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSS-----KKEAE 215
Query: 1379 KVACKEVLKSLRA 1391
+ A K+ LK L+
Sbjct: 216 QAAAKQALKKLKE 228
|
Length = 229 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 74/244 (30%), Positives = 103/244 (42%), Gaps = 32/244 (13%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRC--YQRLEFLGDAVLDYLITVYLYNKYPG 1211
LE L Y F++ LL +ALTH SY +RLEFLGDAVL ++ YL+ +P
Sbjct: 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPD 60
Query: 1212 LSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFG 1271
LS G L+ +R+A V+ + A + + GL K +L + E+ S G
Sbjct: 61 LSEGELSKLRAALVSEESLAEVARELGLGKFLL-----------LGKG--EEKSGGRR-- 105
Query: 1272 WESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR---E 1328
L D E+L GAI++DSG F I LL P I
Sbjct: 106 ------RESILADAFEALIGAIYLDSGLEAARKF--ILKLLIPRIDAIEKEETLKDYKTA 157
Query: 1329 LTEYCQKNHFSMKKPVASRISGKAAV---TVEVQANGRLFEHTFLDADKKTAKKVACKEV 1385
L E+ Q + + + G TVEV NG + KK A++ A K
Sbjct: 158 LQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYG-EGKGKSKKEAEQNAAKAA 216
Query: 1386 LKSL 1389
L+ L
Sbjct: 217 LEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-26
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 560 SVSLIYFYCSRLPSDGYFKPTPKFHINKEMG--ICTLYLPNNCPIQTVIAQ--GNIKTLK 615
++ L+ YC+ LPSD + P+F + G +CT+ LP N P++ ++ + + + K
Sbjct: 1 AIQLLNRYCATLPSDPFTSLRPEFSVEPVDGGYVCTVILPLNSPVREIVGKPMRSKRLAK 60
Query: 616 QAACLEACKKLHQIGALTDNLLPD 639
Q+A +ACKKLH++G L D+LLP
Sbjct: 61 QSAAFKACKKLHELGELNDHLLPI 84
|
This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. Length = 91 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 3e-24
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 32/157 (20%)
Query: 982 LEAITTKKCQED---FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038
LEA+T + F+ E LE LGD+ L+ ++ LFK + + EG L+ + ++SN
Sbjct: 4 LEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNE 63
Query: 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKT 1098
L +L E L ++R + K +++ K
Sbjct: 64 TLARLARELGLGKYLRLGKGEEKS----------------------------GGRLRPKI 95
Query: 1099 VADVVEALIGA-FLSTGGENVGLIFLDRIGIKVDFVN 1134
+ADV EALIGA +L G E L +G ++ ++
Sbjct: 96 LADVFEALIGAIYLDGGFEAARKFLLRLLGPLIEEIS 132
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-23
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 21/112 (18%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAVL+ ++ YLY K+P LS G L +RSA V+N+ A + K GL K++
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1247 SHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
++ KR ++ K L D E+L GA+++D G
Sbjct: 61 EGDIVKRASVK---------------------DKVLADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 3e-20
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 23 RNYQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
R YQ EA+E L ++ I+ TGSGKTL A++ L++ + LVP L
Sbjct: 10 RPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPA---LEALKRGKGGRVLVLVPTREL 66
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
Q AE +K K G G D K E K ++LV TP LLD L
Sbjct: 67 AEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLS 126
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192
L+ + ++ILDE H + + + L + ++ ++A+P +
Sbjct: 127 LSNVDLVILDEAHR-LLDGGFGDQLEKLLKLLPKN-----VQLLLLSATPPE 172
|
Length = 201 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 8e-19
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 980 KVLEAITTKKCQEDF-HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038
+L A+T + H E LE LGD+ L+ ++ L+K Y + EG LS + ++SN
Sbjct: 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNE 61
Query: 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKT 1098
L +L + L FIR G E GR K K
Sbjct: 62 TLARLAKKLGLGEFIR---------------LGRGEAIS----GGRD---------KPKI 93
Query: 1099 VADVVEALIGAFLSTGGENVGLIFLDR-IGIKVDF 1132
+ADV EALIGA G F+ +G ++D
Sbjct: 94 LADVFEALIGAIYLDSGLEAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-17
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK--MHTD 93
++ ++ TGSGKTL A++ + LL + L P L Q AE +K
Sbjct: 1 RDVLLAAPTGSGKTLAALLPI---LELLDSLKGGQVLVLAPTRELANQVAERLKELFGEG 57
Query: 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECH 153
+KVG G + + K K +++V TP LLD L L + +LILDE H
Sbjct: 58 IKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAH 113
Query: 154 HARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
+ + + +L + ++ ++A+P
Sbjct: 114 R-LLNQGFGLLGLKILLKLPKD-----RQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD+ L+ S+ L++ + + EG L + ++SN AL KL + L ++R
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115
D R VK K +AD EALIGA GG
Sbjct: 61 EGDIVK----------------------------RASVKDKVLADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-16
Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
AR YQ ALK+NT+V L TG GKT IA++++ A L K V + L P LV
Sbjct: 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVI---AERLHKKGGKV-LILAPTKPLV 71
Query: 82 PQQAEAIKMHTDLK-------VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQI----L 130
Q AE + ++ G+ + + W+ A V+V TPQ+ L
Sbjct: 72 EQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAK---------VIVATPQVIENDL 122
Query: 131 LDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
+ G R+S L + +LI DE H A G + Y I E YH D+ P + G+TASP
Sbjct: 123 IAG-RIS---LEDVSLLIFDEAHRAVGNYAYVYI-AERYHE-----DAKNPLVLGLTASP 172
|
Length = 773 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 7e-16
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
S++++ EI+E+FR G V+VAT + G+D+ NLVI +D S+IQ GRA
Sbjct: 18 SQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASYIQRIGRA 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-15
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
S++++ EI+++F G + V+VAT + E GLD+ +LVI++D + S+IQ GRA
Sbjct: 22 SQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78
|
Length = 82 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-15
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
EK+ L+E LL+ + + +IF L LL + K + G+
Sbjct: 12 EKLEALLE-LLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG-----IKVAALHGD---- 61
Query: 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
S++++ E++++FR G + V+VAT ++ G+D+ + ++VI +D + S++Q GRA
Sbjct: 62 --GSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
|
Length = 131 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 25 YQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83
Q +A+ L ++ +V TGSGKTL ++ + LL K A+ L P L Q
Sbjct: 3 IQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPI--LQALLPKKGGPQALVLAPTRELAEQ 60
Query: 84 QAEAIKM---HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
E +K L+V G G + A ++ +LV TP LLD LR K
Sbjct: 61 IYEELKKLFKILGLRVALLTG--GTSLKEQARKLKKGKAD-ILVGTPGRLLDLLRRGKLK 117
Query: 141 L-NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193
L +K+L+LDE H + +L + + ++A+ ++
Sbjct: 118 LLKNLKLLVLDEAHRLLDMGFG-----DDLEEILSRLPPDRQILL-LSATLPRN 165
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-13
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
S+K+Q EI+++FR G NV+V+TS+ EEGLD+ S +LVI ++P + IQ +GR
Sbjct: 408 SQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464
|
Length = 773 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-13
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 48/206 (23%)
Query: 23 RNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77
R YQ EAL+ +K + ++ L TG+GKT++A + A L R + LVP
Sbjct: 38 RPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA---AEAIAELKRS-----TLVLVPT 89
Query: 78 VVLVPQQAEAIKMHTDL--KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR 135
L+ Q AEA+K L ++G Y G ++E+ +V V T Q L
Sbjct: 90 KELLDQWAEALKKFLLLNDEIGIYGGG-----------EKELEPAKVTVATVQTLARRQL 138
Query: 136 LSYFKLNMIKVLILDECHH--ARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193
L F N ++I DE HH A + +++ Y RL G+TA+P +
Sbjct: 139 LDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRL------------GLTATPERE 186
Query: 194 KVSSSEQDYWQKIHDLETLMNSKVYT 219
+I DL L+ VY
Sbjct: 187 DG--------GRIGDLFDLIGPIVYE 204
|
Length = 442 |
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 838 LVCTP-HNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGR 896
L+ +N + Y I + +L S F +++GS T+ ++Y+++Y I + +PLL R
Sbjct: 30 LIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDGSEITFVEYYKQKYNITIRDPNQPLLVSR 89
Query: 897 RIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSL 956
K R+ + + + LPPELC I ++ F + SI R +
Sbjct: 90 P---------KRRRNQNGKGEPVL--LPPELCFIT--GLTDRMRKDFMLMKSIADRTRLS 136
Query: 957 LL 958
L
Sbjct: 137 PL 138
|
This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 138 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (160), Expect = 6e-11
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 31/247 (12%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
LES L Y FR+ LL +ALTH S+ +RLEFLGD+VL+ + L+ ++ L
Sbjct: 5 QLESRLRYEFRNAELLRQALTHRSHSATH----NERLEFLGDSVLNCAVAALLFQRFGKL 60
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGW 1272
G L+ +R+ V + +E+ + +NI+ + L LG
Sbjct: 61 DEGDLSRVRANLVKQ-----------------QSLYEIAQALNIS----DGLRLGEGELR 99
Query: 1273 ESVTSFPKALGDIIESLAGAIFVDSG--CNREVVFQSIRPLLEPMITPETMRFHPVRELT 1330
P L D E++ GA+F+D G + V+ + P+L+ I P T+ L
Sbjct: 100 SGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD-HIDPRTLGKDAKTLLQ 158
Query: 1331 EYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLK 1387
EY Q + ++ G A VE + + A ++ A++ A K+ L
Sbjct: 159 EYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218
Query: 1388 SLRASFP 1394
+ A P
Sbjct: 219 EVTAVAP 225
|
Length = 467 |
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 8e-11
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 824 TKSGPLCTCKIHNSLVCTPHNG--QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERY 881
T ++ V HN ++Y G L A S ++G T+ +++ERY
Sbjct: 23 DSPREEFTKELKGLKVEDTHNPLNRVYRPDGETR-LKAPSQLKHSDGKEITFADYFKERY 81
Query: 882 GIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRII 931
+ L +PLL K S LPPELC I
Sbjct: 82 NLTLTDLNQPLLIV----------------KFSSKKSYSILLPPELCVIT 115
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. Length = 115 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-10
Identities = 60/186 (32%), Positives = 84/186 (45%), Gaps = 34/186 (18%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
LES L Y FR+ LL +ALTH S+ +RLEFLGD+VL+ + L+ ++ L
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATH----NERLEFLGDSVLNCAVAALLFQRFGKLD 61
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWE 1273
G LS V+ L K + +E+ + +NI+ E L LG G
Sbjct: 62 EG---------------DLSRVRANLVKQ--QSLYEIAQALNIS----EGLRLGE--GEL 98
Query: 1274 SVTSF--PKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPM---ITPETMRFHPVRE 1328
F P L D E++ GA+F+D G E I+ L P+ I P T+
Sbjct: 99 RSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYVPILDHIDPRTLGKDAKTL 156
Query: 1329 LTEYCQ 1334
L EY Q
Sbjct: 157 LQEYLQ 162
|
Length = 413 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
LE + F + L ALTH S + Y+RLEFLGD VL + L+ +P S
Sbjct: 15 LEERTGHRFANKERLERALTHSSARASKQGN-YERLEFLGDRVLGLCVAEMLFEAFPDAS 73
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYK-----RINITVDSFEKLSLGS 1268
G L+ + VN + A + + GLH I ++ K +N+
Sbjct: 74 EGELSVRLNQLVNAETCAAIADEIGLHDLI-RTGSDVKKLTGKRLLNVR----------- 121
Query: 1269 TFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR- 1327
D++E+L AI++D G ++ RP ++ + R
Sbjct: 122 --------------ADVVEALIAAIYLDGG------LEAARPFIQRYWQKRALETDAARR 161
Query: 1328 ----ELTEYC-QKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
EL E+ + + V SR SG TVEV+ G T K+ A++
Sbjct: 162 DAKTELQEWAHAQFGVTPVYRVDSR-SGPDHDPRFTVEVEVKG-FAPETGEGRSKRAAEQ 219
Query: 1380 VACKEVLK 1387
VA +++L+
Sbjct: 220 VAAEKMLE 227
|
Length = 235 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-10
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 12 EEVSADTLPFARNYQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPF 69
E + D + N Q EA+E L +N ++ TGSGKTLIA++ + S
Sbjct: 22 EILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGK--- 78
Query: 70 VAVFLVPKVVLVPQQAEAIKMHTD--LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTP 127
V++VP L ++ E + ++VG GD +D E +++++V+V TP
Sbjct: 79 -VVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-------ERLARYDVIVTTP 130
Query: 128 QILLDGLRLSYFKLNMIKVLILDECH 153
+ L R + + ++++DE H
Sbjct: 131 EKLDSLTRKRPSWIEEVDLVVIDEIH 156
|
Length = 766 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIR 1054
+ E LE LGD+ L ++ LFK + + EG LS + ++S +L ++ E L F+
Sbjct: 34 NNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLL 93
Query: 1055 TESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLST 1113
G E GR+ + +AD EALIGA +L +
Sbjct: 94 L---------------GKGEEKS----GGRR---------RESILADAFEALIGAIYLDS 125
Query: 1114 GGENVGLIFLDRIGIKVD 1131
G E L + ++D
Sbjct: 126 GLEAARKFILKLLIPRID 143
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD+ L ++ LFK Y N EG LS + ++S +L ++ E L ++R
Sbjct: 45 ERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLG 104
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTGG 1115
E GR++ +AD EALIGA +L +G
Sbjct: 105 KG---------------EEKSG-----------GRRRE--SILADAFEALIGAIYLDSGL 136
Query: 1116 ENVGLIF-------LDRIGIKVDFVNVPYQRQFQVHAERLV 1149
E L+ I F + + Q + A+ LV
Sbjct: 137 EAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLV 177
|
Length = 235 |
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 839 VCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRI 898
V T +N + Y I G+ NS F +G + ++++E+Y I L + PLL R
Sbjct: 34 VETTYNNRTYRIDGITWDPTPNSTFPLKDGGEISVAEYFKEKYNITLKYPNLPLLVVGR- 92
Query: 899 FHVQNYLSKCRQQKQKEPSKISFELPPELCRI 930
K ++ LPPELC I
Sbjct: 93 -----------------KKKPNY-LPPELCFI 106
|
This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 114 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 23 RNYQLEALENALKQNTIVF-LETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R YQ EA+E L++ + + TGSGKTL A L+ A +K +F+VP+ L+
Sbjct: 5 RPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKK-----VLFVVPRKDLL 59
Query: 82 PQ 83
Q
Sbjct: 60 EQ 61
|
Length = 100 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-07
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 16/154 (10%)
Query: 375 LIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSR 434
L+ LL+ R I+FV L L + +K + G+ +
Sbjct: 263 LLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRG-----FKVAALHGD------LPQ 309
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR-ARMQN 493
++++ +E+F+ G + V+VAT + GLD+ + VI +D ++ GR R
Sbjct: 310 EERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR 369
Query: 494 SD--YLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
+ + + R+E L +
Sbjct: 370 KGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLL 403
|
Length = 513 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 28/129 (21%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD L ++ LF+ + + EG LSV+ ++++ + E L IRT
Sbjct: 47 ERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIRT- 105
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
D K +L L N R ADVVEALI A GG
Sbjct: 106 GSDVK------------KLTGKRLLNVR---------------ADVVEALIAAIYLDGGL 138
Query: 1117 NVGLIFLDR 1125
F+ R
Sbjct: 139 EAARPFIQR 147
|
Length = 235 |
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 830 CTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDR 889
C ++ S+V T +N + Y I + S F +++G+ T+ ++Y+++Y I++
Sbjct: 24 CEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLN 83
Query: 890 EPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRI 930
+PLL +S+ +++ + K L PELC +
Sbjct: 84 QPLL-----------VSRPKRRDPRGGEKEPIYLIPELCFL 113
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 117 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 386 EDIRCIIFVERVITA-IVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF 444
+ +IF V A + + L+ + T +T +++ I+E F
Sbjct: 282 RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPK-------------EEREAILERF 328
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
R G + V+V +L+EG+D+ +++I+ P+ + FIQ GR
Sbjct: 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372
|
Length = 442 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 32/126 (25%)
Query: 375 LIESLLEYRGVEDIRCIIFV---ERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC 431
L+ LL+ V R I+FV ERV L L GI C
Sbjct: 235 LLCHLLKQPEVT--RSIVFVRTRERV------HELAGWLRKA--------------GINC 272
Query: 432 ------QSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQS 485
+ K+NE ++ G VNV+VAT + G+D+ + VI FD R+ +++
Sbjct: 273 CYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHR 332
Query: 486 RGR-AR 490
GR R
Sbjct: 333 IGRTGR 338
|
Length = 434 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 385 VEDIRCIIFV-ERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEE 443
I+ ++F R ++ S L+ R ++ +G+ + R I E
Sbjct: 304 RNGIQTLVFFRSRKQVELLYLSPRRRLV-REGGKLLDAVSTYRAGLHREER---RRIEAE 359
Query: 444 FRRGLVNVIVATSILEEGLDVQSCNLVIMFD-PSRTVCSFIQSRGRA-RMQNSDYLLMV 500
F+ G + ++AT+ LE G+D+ S + VI + P +V SF Q GRA R +L+V
Sbjct: 360 FKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418
|
Length = 851 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 26 QLEALENALKQNTIVFL-ETGSGKTLIAIMLLRSYAYLL---RKPSPFVAVFLVPKVVLV 81
QL A+ L ++ +TG+GKT A+LL +K V V ++L
Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTGKTA---------AFLLPLLQKILKSVERKYVSALILA 106
Query: 82 PQQAEAIKMHTDL-KVGKYWGDMGVDFWDGAT---WKEEMSKH--EVLVMTPQILLDGLR 135
P + A+++ +L K+GK G + V G + E K +++V TP LLD ++
Sbjct: 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIK 166
Query: 136 LSYFKLNMIKVLILDE 151
L+ ++ L+LDE
Sbjct: 167 RGKLDLSGVETLVLDE 182
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 43 ETGSGKTL-IAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP---------QQAEAIKMHT 92
+TGSGKT I +L +K P ++L P + A + HT
Sbjct: 44 QTGSGKTAAFLIPILEKLDPSPKKDGPQA-------LILAPTRELALQIAEVARKLGKHT 96
Query: 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDEC 152
+LKV +G G ++ ++V TP LLD L L+ +K L+LDE
Sbjct: 97 NLKVVVIYG--GTSIDKQI--RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 25 YQLEALE-----NALKQNTIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKV 78
YQLE + + I+ E G GKTL I LL +Y + P + V P
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVV--CPLS 58
Query: 79 VLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM--SKHEVLVMTPQILL-DGLR 135
L E K L+V Y GD ++V++ T ++L D
Sbjct: 59 TLHNWLNEFEKWAPALRVVVYHGDGRER--SKLRQSMAKRLDTYDVVITTYEVLRKDKKL 116
Query: 136 LSYFKLNMIKVLILDECHH 154
LS ++LDE H
Sbjct: 117 LSLLNKVEWDRVVLDEAHR 135
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-05
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD+ L+ S+ LFK + + EG LS + ++ +L ++ E L ++
Sbjct: 42 ERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLL-- 99
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTGG 1115
+ G E GR+ + +AD EALIGA +L G
Sbjct: 100 -----L--------GKGEEKS----GGRR---------RPSILADAFEALIGAIYLDQGL 133
Query: 1116 ENV 1118
E
Sbjct: 134 EAA 136
|
Length = 229 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
SR+ + E+ E + G + +VATS LE G+D+ +LVI ++V F+Q GRA
Sbjct: 289 SRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRA 345
|
Length = 814 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-05
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465
LL+ + K I G +S K++ E+++ F G V VIVAT +L G+D+
Sbjct: 382 LLANAITVVTGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLL 435
Query: 466 SCNLVIMFDPSRTVCSFIQSRGRA-RMQN 493
VI+FD T+ +I GRA RM
Sbjct: 436 RVRQVIIFDMPNTIKEYIHQIGRASRMGE 464
|
Length = 518 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 20 PFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFV-------A 71
P+ Q + L L + I +TG+GKT A L+ LL+ P P A
Sbjct: 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKT--AAFLISIINQLLQTPPPKERYMGEPRA 165
Query: 72 VFLVPK---VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH-EVLVMTP 127
+ + P VV + + A A+ +T L V + G G+DF K+ ++ ++LV TP
Sbjct: 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVG--GMDF--DKQLKQLEARFCDILVATP 221
Query: 128 QILLDGLRLSYFKLNMIKVLILDE 151
LLD + L+M++V++LDE
Sbjct: 222 GRLLDFNQRGEVHLDMVEVMVLDE 245
|
Length = 475 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 25 YQLEALENALK-QNTIVFLETGSGKT---LIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
+Q++AL + +N +V TGSGKT L+ I+ +LLR PS A+ L P L
Sbjct: 74 HQVDALRLIREGRNVVVTTGTGSGKTESFLLPIL-----DHLLRDPS-ARALLLYPTNAL 127
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGAT-WKEEM----SKHEVLVMTP----QILL 131
QAE ++ + + G T +E + ++L+ P +LL
Sbjct: 128 ANDQAERLRELIS-DLPGKV---TFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLL 183
Query: 132 DGLRLSYFKLNMIKVLILDECHHARG 157
+ L +K L++DE H RG
Sbjct: 184 RNHDAWLWLLRNLKYLVVDELHTYRG 209
|
Length = 851 |
| >gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS- 476
K +Y+ +S I R EI+ + R G +V+V ++L EGLD+ +LV + D
Sbjct: 472 KVRYL---HSDIDTLER---VEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK 525
Query: 477 ----RTVCSFIQSRGRA 489
R+ S IQ+ GRA
Sbjct: 526 EGFLRSERSLIQTIGRA 542
|
Length = 663 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 44 TGSGKTLIAIMLLRSYAYLL----RKPSPFVAVFLVPKVVL---VPQQAEAIKMHTDLKV 96
TG+GKT A LL + +LL RK P + L P L V QA + HT L +
Sbjct: 47 TGTGKT--AAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDI 104
Query: 97 GKYWGDMGVDFWDGATWKEEMSK-HEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
G GV + E S+ +++V TP LL ++ F ++ LILDE
Sbjct: 105 ATITG--GVAY---MNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155
|
Length = 434 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
+K ++ I+ EFR G V++ T +L G+DVQ +LVI +D + ++I GR+
Sbjct: 302 DQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358
|
Length = 401 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 1325 PVRELTEYCQKNHFSMKKPVASRISGKAA--VTVEVQANGRLFEHTFLDADKKTAKKVAC 1382
P L E CQK + TV V NG+ + + KK AK++A
Sbjct: 1 PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGT-GSSKKEAKQLAA 59
Query: 1383 KEVLKSL 1389
++ L+ L
Sbjct: 60 EKALQKL 66
|
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66 |
| >gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS- 476
K +Y+ +S I R EI+ + R G +V+V ++L EGLD+ +LV + D
Sbjct: 468 KVRYL---HSEIDTLER---VEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK 521
Query: 477 ----RTVCSFIQSRGRA 489
R+ S IQ+ GRA
Sbjct: 522 EGFLRSERSLIQTIGRA 538
|
All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 655 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.004
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492
S++++ + + G + +VATS LE G+D+ + +LVI +V S +Q GRA Q
Sbjct: 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371
Query: 493 ---NSDYLLMVKSG----------DSTTQSRLENYLASGNKMRKEVLSH---ASLPCSPL 536
S L ++ + RLEN N + +VL+ A+ L
Sbjct: 372 VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPL--DVLAQQTVAAAAMDAL 429
Query: 537 NNHMYGEDFY-HVESTGTIATLSSSV--SLIYFYCSRLPSDGYFKPTPKFHINKEMGICT 593
+++Y V L V + + R PS + PK N+E GI T
Sbjct: 430 QV----DEWYSRVRRAAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILT 485
|
Length = 1490 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1396 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.98 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.98 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.97 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.97 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.97 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.97 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.97 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.97 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.96 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.96 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.96 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.96 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.95 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.95 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.95 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.95 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.94 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.94 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.94 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.94 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.94 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.93 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 99.93 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.93 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.93 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.92 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.92 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.92 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.92 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.92 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.92 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.92 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.91 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.91 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.91 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.9 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.9 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.9 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.9 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.9 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.89 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.89 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.89 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.89 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.89 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.88 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.88 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.87 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.87 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.86 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.86 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.85 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.85 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.85 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.85 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.85 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.84 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.83 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.82 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.82 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.82 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.82 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.81 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.8 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.79 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.79 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.79 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.77 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.77 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.77 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.76 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.76 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.76 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.76 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.76 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.76 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.75 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.74 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.73 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.73 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.72 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.72 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.71 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.71 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.68 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.68 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.67 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.67 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.66 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.66 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.64 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 99.61 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.58 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.58 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.58 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.57 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.56 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.55 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.53 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.53 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.53 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.51 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.49 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.48 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.48 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.4 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.39 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.35 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.3 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.3 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.27 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.26 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.17 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.15 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.14 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.08 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.06 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.05 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.04 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.03 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.02 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.02 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.01 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.97 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.94 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.92 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 98.9 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.89 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.8 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.77 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.71 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.71 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.71 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 98.7 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.69 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.67 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.65 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.5 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.47 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.45 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.22 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.09 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.03 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 98.0 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.88 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.88 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.82 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.77 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.76 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.69 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.67 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 97.63 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.63 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.56 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.52 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.49 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 97.47 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.45 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.38 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.36 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.31 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.29 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.26 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.14 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.04 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 96.99 | |
| PLN03202 | 900 | protein argonaute; Provisional | 96.78 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.78 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 96.63 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.6 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.6 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.59 | |
| PRK06526 | 254 | transposase; Provisional | 96.52 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.42 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.38 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.36 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.36 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 96.34 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.31 | |
| PRK08181 | 269 | transposase; Validated | 96.0 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.94 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.93 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.83 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.55 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.51 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 95.45 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.41 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.38 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.31 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.26 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 95.24 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 95.06 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 95.05 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.02 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.99 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.92 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.88 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.88 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.87 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 94.85 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 94.83 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.78 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 94.74 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.59 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.52 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.43 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 94.16 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.14 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 94.12 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 94.08 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.02 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.69 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 93.64 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 93.62 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.55 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.37 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 93.36 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 93.35 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 93.34 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 93.32 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 93.12 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 93.07 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.0 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 92.81 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 92.59 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 92.58 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 92.39 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.35 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.12 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 92.11 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 92.08 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 91.87 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 91.76 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 91.7 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 91.69 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 91.65 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 91.65 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 91.63 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.6 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 91.43 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 91.31 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 91.29 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 91.16 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.03 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 91.0 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.95 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 90.95 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 90.83 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 90.8 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 90.71 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 90.67 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 90.59 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 90.48 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 90.48 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 90.4 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 90.39 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 90.38 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 90.31 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 90.12 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.0 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 89.96 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 89.73 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 89.73 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 89.68 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 89.6 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 89.58 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 89.5 | |
| PRK08116 | 268 | hypothetical protein; Validated | 89.5 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 89.5 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 89.36 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 89.22 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 89.14 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 88.84 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 88.79 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 88.77 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 88.62 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 88.52 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 88.45 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 88.44 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 88.41 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 88.41 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 88.38 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 88.35 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 88.34 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 88.12 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 88.11 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 88.05 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 88.05 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 88.02 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 87.99 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 87.91 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.88 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 87.88 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 87.85 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 87.82 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 87.75 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 87.58 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 87.42 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 87.25 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 87.14 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 87.14 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 87.0 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 86.94 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 86.91 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 86.91 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 86.32 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 86.28 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 86.23 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 86.11 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 86.1 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 86.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 85.99 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 85.93 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 85.93 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 85.85 | |
| PF11469 | 120 | Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 | 85.81 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 85.71 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 85.64 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 85.57 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 85.44 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 85.32 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 85.31 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 85.26 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 85.25 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 85.24 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 85.12 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 85.0 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 84.96 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 84.91 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 84.86 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 84.76 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 84.63 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 84.59 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 84.46 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 84.43 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 84.38 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 84.35 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 84.15 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 84.11 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 84.09 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 84.04 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 83.92 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 83.85 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 83.85 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 83.54 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 83.51 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 83.49 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 83.29 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 83.24 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 83.23 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 83.17 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 83.02 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 82.99 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 82.92 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 82.91 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 82.69 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 82.63 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 82.55 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 82.46 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 82.23 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 82.22 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 82.11 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 82.09 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 82.08 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 82.06 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 81.97 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 81.94 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 81.91 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 81.87 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 81.81 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 81.77 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 81.41 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 80.98 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 80.84 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 80.74 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 80.38 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 80.06 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-70 Score=691.91 Aligned_cols=1180 Identities=26% Similarity=0.307 Sum_probs=772.5
Q ss_pred HHHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHH
Q 000607 85 AEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYAC 163 (1396)
Q Consensus 85 ~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~ 163 (1396)
......+++..+...++......|+..+|.......++.++|+..+++.+.+++..+.+..++++||||+.... |++..
T Consensus 4 ~~~~~~~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1606)
T KOG0701|consen 4 ESFKSTHTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRH 83 (1606)
T ss_pred cchhhcccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchh
Confidence 33445556777777888877888887799999999999999999999999999999999999999999999976 77777
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
.|...-.. .....|+++|+||.+.+..... ++....+..++..+.+.+.+.++...+..|...|.+.....-..
T Consensus 84 ~~~~~~~~----~~~s~pr~~~~~a~~~~~~~~~--~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~ 157 (1606)
T KOG0701|consen 84 FMDLSSSG----PSFSVPRILGLTASLLNDKFWL--EELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDA 157 (1606)
T ss_pred hhhccccc----CCCCcchhhhccCCCcCCCcch--hhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhh
Confidence 66544311 1246799999999998876543 25667788888888888888877777777877777765532110
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchh----
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFF---- 319 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~---- 319 (1396)
.. .. ..- ..+..+..+ ..+.+.-.-.+.........-..|+||+.+........-....
T Consensus 158 ~~----~~----~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 220 (1606)
T KOG0701|consen 158 EY----GP----LLI-NKDKLICVF--------LIPDCIVITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNP 220 (1606)
T ss_pred hh----hh----hhc-cccceeEEe--------ccCcceeeeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCH
Confidence 00 00 000 000000000 0000000000111112223345677777664433211110000
Q ss_pred ---hhh-hcccchHHHHHHHHHHHHHHHHHhcc-CCC-----ccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCee
Q 000607 320 ---AWE-QLDGFGETIIKKFGSDASQALVTYVP-SGA-----EWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIR 389 (1396)
Q Consensus 320 ---~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k 389 (1396)
.+. +.-...............+.++.... ... .+.........+. ....+-+.+- .|.+ .....
T Consensus 221 ~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~-~~~~~~v~k~--~l~~---~~~l~ 294 (1606)
T KOG0701|consen 221 AELHYCEEVFSDSELRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFRLIH-ESVCPLVDKE--YLEK---IETLS 294 (1606)
T ss_pred HHhhhhhhhcCcHHHHHHHhHHHHHHHhhhcchhhhcccceeeeecccccceeeh-hhcCchhhHH--HHHh---hhhhh
Confidence 000 00000111111111122222211100 000 0000000000000 0011111111 2222 23467
Q ss_pred EEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCc-----CCCCHHHHHHHHHHHhcCCeeEEEEecccccccCC
Q 000607 390 CIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI-----QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDV 464 (1396)
Q Consensus 390 ~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~-----~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDI 464 (1396)
+||||+.+.++..+..++.+. ....+.++.|..... .......|.+++..|+..++|+|++|++++||+|+
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREI----FSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred heeecccchHHHHHHHHHHHh----hccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 899999999999999999987 345566677743211 01223458899999999999999999999999999
Q ss_pred CcccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 000607 465 QSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGED 544 (1396)
Q Consensus 465 p~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~~~~~~~~~~~~~~~~~~~ 544 (1396)
+.|+.|+++|.|...++|+|+.||+++..+.++++....+...... .-....++..++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~-~s~~~~~~i~~~~-------------------- 429 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN-PSYAYTEQIPRPQ-------------------- 429 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC-hhHhHHhhcccch--------------------
Confidence 9999999999999999999999999999998888876443222211 0111111111100
Q ss_pred ceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHH
Q 000607 545 FYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACK 624 (1396)
Q Consensus 545 ~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~ 624 (1396)
.+.....| ++.||+..-.-. ...+.-+|.||.++|...- +.-+|.
T Consensus 430 l~~~~~~~-----------v~~~~~~~e~~~-----------~~~~~~~v~~~~~~p~~~~-------------~~~~~~ 474 (1606)
T KOG0701|consen 430 LFLRLDAN-----------VNKYCARAELLK-----------HVPFLSTVVLPVNSPLKMC-------------IVGLCL 474 (1606)
T ss_pred hhcccccc-----------hHHHHHHHHhcc-----------CCCcceeEEEecCchHHHH-------------HHHhHH
Confidence 00011111 889998642110 1235568899988775532 123999
Q ss_pred HHHHcCCCCCCCCcccccchhhh----------------cccCCCCCCCCCCccCCccccCCCCCCCcceEEEEEEeec-
Q 000607 625 KLHQIGALTDNLLPDIVVEKHDA----------------QKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELK- 687 (1396)
Q Consensus 625 ~L~~~g~ldd~L~P~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~- 687 (1396)
+||++|++||+++|.+++..... ...++++....+....++.+.+.....++ ++|+|.+.+.
T Consensus 475 ~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~-~c~~~~~~~~~ 553 (1606)
T KOG0701|consen 475 KLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQ-PCYLYVIGLEL 553 (1606)
T ss_pred HHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCC-ceeeeeeccce
Confidence 99999999999999987653210 01112222222333444444443333333 3556666542
Q ss_pred ---CCCc----------cccccceEEEeecCcccccccccceeEEeeCCeEEEEEeecc-ccccCHHHHHHHHHHHHHHH
Q 000607 688 ---QHFN----------YDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLG-RIQLIPNQVLLCRRFQITLF 753 (1396)
Q Consensus 688 ---~~~~----------~~~~~~~~~ll~~~~lp~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~f~~~~f 753 (1396)
..+. ......+|++++-+.+|.. ++|+.+...|.+++.+.... ...+..++++....|+.++|
T Consensus 554 ~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~~---~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 630 (1606)
T KOG0701|consen 554 TMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPKI---PHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIF 630 (1606)
T ss_pred ecCCchhcccccccccCchhhhhhhcccchhhhccc---ccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccch
Confidence 1111 0124678999999999984 69999999998888765433 23577888888999999999
Q ss_pred HHHhccccccchhhccccccccCCCCeEEEecCCCC------ccCceeeeeecccCCCCCCCCCCcccccccccccccCC
Q 000607 754 RVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQ------LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSG 827 (1396)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1396)
+.+.+... +. +...+......++++|.+.. .|+|..++.+..+....+.++.+. .....
T Consensus 631 ~~v~~~~~-----~~-~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~---------~~~~~ 695 (1606)
T KOG0701|consen 631 TEVLRLAK-----IN-LEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDE---------VRKAK 695 (1606)
T ss_pred hhhhhhhc-----cc-cccCCchhhHHHHhcccccccccchhhhHHHHHHHHhCcccccCCCChhh---------hhhhh
Confidence 99998531 11 11133456667888996522 788888887664433112211110 01233
Q ss_pred CcccccccCcEEecCcCC---eeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccc
Q 000607 828 PLCTCKIHNSLVCTPHNG---QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNY 904 (1396)
Q Consensus 828 ~~~~~~~~~~~V~~~~~~---~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~ 904 (1396)
.+...++++++++ +.+ -.|++..|.....|+|.|| +-.+.++..||..+|+..+.+..||++.++....+.|+
T Consensus 696 ~f~~~~~~~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~--g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~ 771 (1606)
T KOG0701|consen 696 YFDGEDSQDAVGM--YRNDDQPQFYVAEVLPLLAPSSLFP--GLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNL 771 (1606)
T ss_pred hcccccchhhhhh--hhcccccceeeeeeeeeccchhcCC--Ccchheeeeeeeccccchhhhccccccccccchhhhcc
Confidence 4666778888777 322 1457889999999999997 34556888999999999999999999999999999999
Q ss_pred cchhhhcccCC-----C--Ccc--eeeecccccccccccccHHHHHHhhhhhhHHHHHHHHHHHHHHHH-----------
Q 000607 905 LSKCRQQKQKE-----P--SKI--SFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKN----------- 964 (1396)
Q Consensus 905 l~~~~~~~~~~-----~--~~~--~~~L~pelC~~~~~p~~~~~~~~~~~lPsi~~~~~~~l~a~~l~~----------- 964 (1396)
+.++....... + .+. ...+--++ ..+|.+++.|+.+-++|.+++|++. .++..+.
T Consensus 772 ~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~---~~h~~~~s~~~~~~~~p~~v~~v~~--tg~~~s~~ta~~li~~~~ 846 (1606)
T KOG0701|consen 772 LVPRGDNQKGSALPNSSSETERLKDESLEHSL---IIHPALASLWRRAVCLPEILYRVLL--TGALVSLSTAVDLIPHDF 846 (1606)
T ss_pred cCchhhccccceeecccchhhhhhHHHhhccC---CCCcCcchhhhhhccCcchheeecc--ccceeeeecccchhhhhh
Confidence 98864321110 0 000 01122222 3578889999999999999998742 1221110
Q ss_pred -HHh-hcc------------------------------------------------------------------------
Q 000607 965 -MLL-DHC------------------------------------------------------------------------ 970 (1396)
Q Consensus 965 -~l~-~~~------------------------------------------------------------------------ 970 (1396)
.+. ..|
T Consensus 847 ~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~ 926 (1606)
T KOG0701|consen 847 SSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQV 926 (1606)
T ss_pred hhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchh
Confidence 000 000
Q ss_pred ------------c----c--------------------CC--------------------CCC---------------HH
Q 000607 971 ------------M----Q--------------------NV--------------------TIP---------------TI 979 (1396)
Q Consensus 971 ------------~----~--------------------~~--------------------~~~---------------~~ 979 (1396)
+ . .. .++ ..
T Consensus 927 ~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s 1006 (1606)
T KOG0701|consen 927 LAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPNKRSDWEAVEKILNFRYVFSISLASIALSTS 1006 (1606)
T ss_pred hhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCcccccccccccccccccccccceeccccccccccchh
Confidence 0 0 00 001 26
Q ss_pred HHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccC
Q 000607 980 KVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFD 1059 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~ 1059 (1396)
+|+||||++++.+.++|||||+||||+||++++.++|.+||+.+||+|+.+|+..++|.+|+++|...||++|++.+.|.
T Consensus 1007 ~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fe 1086 (1606)
T KOG0701|consen 1007 LLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFE 1086 (1606)
T ss_pred HHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCC----CCCccC-----------ccccc-----CC---ccccccc--ceecccchhhHHHHHHHHHHhhcC
Q 000607 1060 PKMWIIPGDNS----GSYELN-----------DDSLF-----NG---RKIYVTG--RKKVKSKTVADVVEALIGAFLSTG 1114 (1396)
Q Consensus 1060 ~~~w~~~~~~~----~~~~~~-----------~~~~~-----~~---~~~~~~~--~~~~~~k~~aD~~EAliGA~~~~~ 1114 (1396)
|..|..|+... .+.+.. ++... ++ ...+..+ .++...|++||++|||+||+|+|+
T Consensus 1087 p~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~ 1166 (1606)
T KOG0701|consen 1087 PSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDG 1166 (1606)
T ss_pred ccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceecCCCHHHHHHHHHHhhhhhc
Confidence 98766665421 111110 00000 00 0011112 468899999999999999999999
Q ss_pred ChhHHH-----HHHhhcCccccCCCcc-----------------------------------------------------
Q 000607 1115 GENVGL-----IFLDRIGIKVDFVNVP----------------------------------------------------- 1136 (1396)
Q Consensus 1115 G~~~a~-----~~~~~l~~~~~~~~~~----------------------------------------------------- 1136 (1396)
|...+. .+|+|.++...+....
T Consensus 1167 ~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~l 1246 (1606)
T KOG0701|consen 1167 GLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGL 1246 (1606)
T ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhccccccccccc
Confidence 998777 8899998765421000
Q ss_pred --ccc-------------------------------------c-------------------------------------
Q 000607 1137 --YQR-------------------------------------Q------------------------------------- 1140 (1396)
Q Consensus 1137 --~~~-------------------------------------~------------------------------------- 1140 (1396)
+++ +
T Consensus 1247 d~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sl 1326 (1606)
T KOG0701|consen 1247 DATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEAL 1326 (1606)
T ss_pred chHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhccCccchHHHHHHHh
Confidence 000 0
Q ss_pred --------cccC--------------------------hhhHHhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcc
Q 000607 1141 --------FQVH--------------------------AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY 1186 (1396)
Q Consensus 1141 --------~~~~--------------------------~~~~~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~y 1186 (1396)
.+.. ......+..+|+.+||.|.++.++.+|+||.||..+....||
T Consensus 1327 i~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~ 1406 (1606)
T KOG0701|consen 1327 IGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCY 1406 (1606)
T ss_pred hhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhcccchhhhhhhcccccccccccccCccchhh
Confidence 0000 000112567889999999999999999999999888889999
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
||||||||+|++++|++|+|...+..+||.++++|+++|+|...|.+|++.++|+|+...+..+...|..++....+...
T Consensus 1407 qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~ 1486 (1606)
T KOG0701|consen 1407 QRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNL 1486 (1606)
T ss_pred hhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred CCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCcccccCCchhHHHHHHHhcCCCCCcceee
Q 000607 1267 GSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVAS 1346 (1396)
Q Consensus 1267 ~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~L~~~~~~~~~~~~~~~~~ 1346 (1396)
....+|.+....||+++|+||++.||||+|+|...+.+..-+.+.-..-...+....||++.+...+. ..
T Consensus 1487 ~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~----------k~ 1556 (1606)
T KOG0701|consen 1487 DSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCE----------KV 1556 (1606)
T ss_pred ccCCCchhhcccchhhhhhhhcccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhh----------hh
Confidence 77779999999999999999999999999999654443322222111111112233444443322222 22
Q ss_pred ccCCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1347 RISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1347 ~~~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
.+.|....+|.|..+|. . .|.|.+++.||..|++.|++.|+..+.
T Consensus 1557 ~d~~~~~~tv~~~~~~~--~-~~~g~~~~~aK~s~~k~A~~ll~~~~~ 1601 (1606)
T KOG0701|consen 1557 ADAGKVRVTVDVFNKEV--F-AGEGRNYRIAKASAAKAALKLLKKLGL 1601 (1606)
T ss_pred hhccceEEEEEecccch--h-hhcchhhhhhhhhHHHHHHHHHHHhhh
Confidence 23344444454444444 3 688999999999999999998886653
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=501.74 Aligned_cols=462 Identities=25% Similarity=0.324 Sum_probs=324.5
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---e
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL---K 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~---~ 95 (1396)
.+.+|.||..+...++.+|++|++|||.|||+||+++|...+. ..++ +++||+||++||.|+++.+++.+++ .
T Consensus 13 ~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~---~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLR---WFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHH---hcCC-eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 4569999999999999999999999999999999998875543 3344 8999999999999999999999876 6
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|....+ .....+...+|+|+|||++.|.+.+|.+++.++++|||||||++.++++|..+++.+..
T Consensus 89 i~~ltGev~p~-----~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~----- 158 (542)
T COG1111 89 IAALTGEVRPE-----EREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR----- 158 (542)
T ss_pred eeeecCCCChH-----HHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-----
Confidence 77899986544 22334447899999999999999999999999999999999999999999999998873
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccC--hhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCAS--ESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~--~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....|+|+||||||+... +.+.+...+|+-.-..+++ -.++..|+.. ..+.+-..++|.++.+ +
T Consensus 159 -~~k~~~ilgLTASPGs~~---------ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~---~kve~ikV~lp~e~~~-i 224 (542)
T COG1111 159 -SAKNPLILGLTASPGSDL---------EKIQEVVENLGIEKVEVRTEEDPDVRPYVKK---IKVEWIKVDLPEEIKE-I 224 (542)
T ss_pred -hccCceEEEEecCCCCCH---------HHHHHHHHhCCcceEEEecCCCccHHHhhcc---ceeEEEeccCcHHHHH-H
Confidence 356799999999998643 3688888888865444433 3455555554 3344455566777654 7
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHH-HHHHH-------HHHhHHHHHHH----HHHHHhhccccchhhh
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKIN-STLLY-------CLSELGVWLAL----KAAETISCYESDFFAW 321 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~lg~~~a~----~~~~~~~~~~~~~~~~ 321 (1396)
.+.+.+..++....|+..++..+...-.++.+..+. ..... +..-++..... .+.+++.
T Consensus 225 r~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elle--------- 295 (542)
T COG1111 225 RDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLE--------- 295 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 777777777777777766554422211112221111 00000 00111111100 0111111
Q ss_pred hhcccchHHHHHHHHHHHHHHHHH-------hccCCCccccCC-CCcccCCCCCccHHHHHHHHHHhhh-cCCCCeeEEE
Q 000607 322 EQLDGFGETIIKKFGSDASQALVT-------YVPSGAEWSIGD-DSKFNLDSGLLTEKIVCLIESLLEY-RGVEDIRCII 392 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~-~~~~~~~~~~~s~Kv~~L~~~L~~~-~~~~~~k~II 392 (1396)
........+|+.+..+.-.. .+..++.+..+. ........+..+||+..+.++++++ ...++.|+||
T Consensus 296 ----tqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIV 371 (542)
T COG1111 296 ----TQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIV 371 (542)
T ss_pred ----hhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEE
Confidence 11111222333322221111 000000000000 0000112344599999999999985 4567799999
Q ss_pred EechHHHHHHHHHHHHhhcCCCCCceeeEEecCCC--CcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEE
Q 000607 393 FVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLV 470 (1396)
Q Consensus 393 Fv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~--~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lV 470 (1396)
|++.|.||+.+...|....+. .+ ..+.|..+ +..||++++|.+++++||+|++|+||||||+|||+|||+|++|
T Consensus 372 FT~yRdTae~i~~~L~~~~~~---~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 372 FTEYRDTAEEIVNFLKKIGIK---AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred EehhHhHHHHHHHHHHhcCCc---ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEE
Confidence 999999999999999986322 22 47778543 4478999999999999999999999999999999999999999
Q ss_pred EEeCCCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHHHHHH
Q 000607 471 IMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMRKEVL 526 (1396)
Q Consensus 471 I~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~ 526 (1396)
|+||+..|++.+|||+||+||.. |++++++.++..+ ...+....+.|+.|.+...
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrd-eayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRD-EAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 7888888877433 3344555667777876543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=480.36 Aligned_cols=435 Identities=28% Similarity=0.355 Sum_probs=286.6
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CCeEE
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DLKVG 97 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~~v~ 97 (1396)
...+|+||.|+...|+.+|+||++|||+|||+||+.++..+.++ .+..+++|+|||++|+.||.+.+...+ +..+.
T Consensus 60 ~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw---~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T 136 (746)
T KOG0354|consen 60 NLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEW---RPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVT 136 (746)
T ss_pred cccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhc---CCcceEEEeeCCchHHHHHHHHHhhccCcccce
Confidence 45589999999999996699999999999999999988876554 345779999999999999998888765 45666
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccc-cceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL-NMIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l-~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
...|+.... ..........+|+|+|||++.+.|.++...- +.+.+||||||||+.++|+|+.||+.|...
T Consensus 137 ~~l~~~~~~----~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~----- 207 (746)
T KOG0354|consen 137 GQLGDTVPR----SNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL----- 207 (746)
T ss_pred eeccCccCC----CchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh-----
Confidence 666653222 1223445589999999999999999876544 899999999999999999999999988753
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe--ccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT--CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~--~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
....++||||||||+..- .++.+.+..|+..|+.+... ....+++.++...|.. .. ... ....
T Consensus 208 k~~~~qILgLTASpG~~~-----~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~-~~~--------~~~~ 272 (746)
T KOG0354|consen 208 KNQGNQILGLTASPGSKL-----EQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LS-LCE--------RDIE 272 (746)
T ss_pred hhccccEEEEecCCCccH-----HHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HH-Hhh--------hhhh
Confidence 234569999999998321 26777788888777765443 2344555555444443 11 111 1122
Q ss_pred HHHHHHHHHHHhhhhhhchhhHH----------HHHHHHH-----------HH--HHHHHHHHHHHhHHHH--HHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQ----------AELIRKK-----------VS--KINSTLLYCLSELGVW--LALKAAE 309 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~----------~~~~~~~-----------~~--~~~~~~~~~~~~lg~~--~a~~~~~ 309 (1396)
..+..+.+++...+...++.... .....+. +. .+.......+..=|.. .+..+.+
T Consensus 273 ~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~ 352 (746)
T KOG0354|consen 273 DPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLE 352 (746)
T ss_pred hhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Confidence 22333333333333321211100 0000000 00 0000000000000111 0000000
Q ss_pred Hhhccccch-hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-hcCCCC
Q 000607 310 TISCYESDF-FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-YRGVED 387 (1396)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~~~~~~ 387 (1396)
-........ ..+...+. . ...++......+.. +.. ..+...||+..|.++|.+ |...++
T Consensus 353 ~f~~e~~~~k~~~~~~e~---~-~~~~~~~~m~~~~~-l~~--------------~~~~~npkle~l~~~l~e~f~~~~d 413 (746)
T KOG0354|consen 353 DFYEEVALKKYLKLELEA---R-LIRNFTENMNELEH-LSL--------------DPPKENPKLEKLVEILVEQFEQNPD 413 (746)
T ss_pred hhccccchhHHHHHHhcc---h-hhHHHHHHHHhhhh-hhc--------------CCCccChhHHHHHHHHHHHhhcCCC
Confidence 000000000 00000000 0 00111111111111 100 112458999999999988 466788
Q ss_pred eeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCC--cCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 388 IRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 388 ~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~--~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.|+||||++|..|..|..+|.+... .++++..+.|.+++ ..+|++++|++++++||+|++|+||||||+|||+||+
T Consensus 414 sR~IIFve~R~sa~~l~~~l~~~~~--~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 414 SRTIIFVETRESALALKKWLLQLHE--LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred ccEEEEEehHHHHHHHHHHHHhhhh--cccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 9999999999999999999996322 47899999997643 3589999999999999999999999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEe
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVK 501 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~ 501 (1396)
.||+||+||...|+..+|||+||+|..+|++++++.
T Consensus 492 ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t 527 (746)
T KOG0354|consen 492 ECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTT 527 (746)
T ss_pred cccEEEEecCCccHHHHHHHhccccccCCeEEEEEc
Confidence 999999999999999999999996666788888887
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=427.79 Aligned_cols=404 Identities=24% Similarity=0.298 Sum_probs=327.6
Q ss_pred ccccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHhcccCcccc-------------------
Q 000607 933 APISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQED------------------- 993 (1396)
Q Consensus 933 ~p~~~~~~~~~~~lPsi~~~~~~~l~a~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~------------------- 993 (1396)
-.+..+++.-++++|-..|+|....-..-|.+.|+|.|++. .++.-||||||...+
T Consensus 17 tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r-----~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~ 91 (533)
T KOG1817|consen 17 TGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDR-----CLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQ 91 (533)
T ss_pred hCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecch-----HHHHHHhcCchHHhhCCCCchhhhccccccCcCC
Confidence 44667888889999999999998888889999999999997 778889999986311
Q ss_pred --------------------------------------CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 994 --------------------------------------FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 994 --------------------------------------~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..+||||||||++..+++|.++|..+|...||-|-..|..+|
T Consensus 92 ~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~v 171 (533)
T KOG1817|consen 92 PKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIV 171 (533)
T ss_pred cccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHH
Confidence 068999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
.|++|+.+|+++.++.|+. +.-|.. .|... --...+|++|||+|||.|+++|
T Consensus 172 qnr~la~lakklrkd~fl~---------yahg~d---l~~~~----------------E~Kha~an~feavi~a~~l~g~ 223 (533)
T KOG1817|consen 172 QNRHLAKLAKKLRKDEFLL---------YAHGYD---LCFET----------------ELKHAMANCFEAVIGAKYLDGG 223 (533)
T ss_pred HhHHHHHHHHHHHHHHHHH---------HhcCcc---hhhHH----------------HHHHHHHHHHHHHhHHHHHhcc
Confidence 9999999999999999998 444431 01111 2357899999999999999999
Q ss_pred hhHHHHHHhhc--Ccc----ccCCCccc---ccccccC-------hhhHHhHHHHHHHcCcccCCHHHHHHHhccCCCCC
Q 000607 1116 ENVGLIFLDRI--GIK----VDFVNVPY---QRQFQVH-------AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYML 1179 (1396)
Q Consensus 1116 ~~~a~~~~~~l--~~~----~~~~~~~~---~~~~~~~-------~~~~~~~~~le~~lgy~f~~~~ll~~Alth~S~~~ 1179 (1396)
...+....+.. +.+ ..|...+. +.+-|.. .+....+.++|+++|..|.+.+++.+|+|-.|...
T Consensus 224 ~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~ 303 (533)
T KOG1817|consen 224 LVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPF 303 (533)
T ss_pred hHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 88776554332 111 12222221 1111110 01123467899999999999999999999999764
Q ss_pred CC-CCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhH
Q 000607 1180 PE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITV 1258 (1396)
Q Consensus 1180 ~~-~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~ 1258 (1396)
++ ...+|||||||||+||++++|++||.+||+..+|.|+.+|+.+|||++-+.+|..+|+++++..+...-.. .
T Consensus 304 n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~~-----~ 378 (533)
T KOG1817|consen 304 NHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKDF-----Q 378 (533)
T ss_pred hhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhhh-----h
Confidence 33 35799999999999999999999999999999999999999999999999999999999999887643111 0
Q ss_pred hhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCcc---cccCCchhHHHHHHHh
Q 000607 1259 DSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPE---TMRFHPVRELTEYCQK 1335 (1396)
Q Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~~---~~~~~p~~~L~~~~~~ 1335 (1396)
...-|.+||+|||+|||+|+|.|. +.|.+|+..++.|.+..- ....+|++.|+++|-.
T Consensus 379 -----------------~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~ 439 (533)
T KOG1817|consen 379 -----------------NLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLT 439 (533)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHH
Confidence 234689999999999999999766 789999999999987542 2347899999999986
Q ss_pred cCCC------CCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1336 NHFS------MKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1336 ~~~~------~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
..+. ++.|.+....|+ ..|+|.|+++|+.+| +|.|+|.+.|+.+||+.||+.++.-+|
T Consensus 440 ~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrla-t~~G~nik~Ae~rAA~~ALe~~~~dF~ 506 (533)
T KOG1817|consen 440 LRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLA-TGVGSNIKQAEMRAAMQALENLKMDFS 506 (533)
T ss_pred HhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEe-eccCchHhHHHHHHHHHHHHHHHhhhH
Confidence 5443 566777766664 359999999999999 899999999999999999999985443
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=367.25 Aligned_cols=222 Identities=32% Similarity=0.425 Sum_probs=199.8
Q ss_pred HhHHHHHHHcCcccCCHHHHHHHhccCCCCCCC-CCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCc
Q 000607 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNN 1227 (1396)
Q Consensus 1149 ~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~-~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n 1227 (1396)
..+..+++.+||.|+|+.||.+||||+||.... ...+||||||||||||+++|++|||++||+.++|+||.+|+.+||+
T Consensus 6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~ 85 (235)
T COG0571 6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSE 85 (235)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999999999997432 5689999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHH
Q 000607 1228 DCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQS 1307 (1396)
Q Consensus 1228 ~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~ 1307 (1396)
+.|+.+|..+||++||+.++++.... +...+++++|+|||+|||||+|+|. +.+++|
T Consensus 86 ~~La~ia~~l~l~~~l~lg~ge~~~g---------------------g~~~~silaD~~EAligAiylD~g~--~~~~~~ 142 (235)
T COG0571 86 ESLAEIARELGLGDYLRLGKGEEKSG---------------------GRRRESILADAFEALIGAIYLDSGL--EAARKF 142 (235)
T ss_pred HHHHHHHHHhCccchhhccCChhhcC---------------------CCCchhHHHHHHHHHHHHHHHhCCh--HHHHHH
Confidence 99999999999999999999876542 2457899999999999999999994 799999
Q ss_pred hhhccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHH
Q 000607 1308 IRPLLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVA 1381 (1396)
Q Consensus 1308 ~~~~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~A 1381 (1396)
+.+++.|.+.. .....||+++||||+|..+...|.|++..+.|+ ..|++.|.++|..++ +|.|+|+|+|++.|
T Consensus 143 i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g-~G~G~skk~AEq~A 221 (235)
T COG0571 143 ILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELG-TGKGRSKKEAEQAA 221 (235)
T ss_pred HHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEE-EecccCHHHHHHHH
Confidence 99999988753 223389999999999999999999998887774 459999999999988 99999999999999
Q ss_pred HHHHHHHhhhhCC
Q 000607 1382 CKEVLKSLRASFP 1394 (1396)
Q Consensus 1382 A~~AL~~L~~~~~ 1394 (1396)
|+.||+.|....+
T Consensus 222 A~~al~~l~~~~~ 234 (235)
T COG0571 222 AEQALKKLGVKEP 234 (235)
T ss_pred HHHHHHHhccccC
Confidence 9999999987654
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=371.12 Aligned_cols=218 Identities=27% Similarity=0.300 Sum_probs=190.3
Q ss_pred HhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCch
Q 000607 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNND 1228 (1396)
Q Consensus 1149 ~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~ 1228 (1396)
..+..||++|||+|+|+.||.+||||+|+. .....+||||||||||||+++|++|||.+||+.++|+||.+|+.+|||.
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~-~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSAR-ASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcc-cCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 457889999999999999999999999996 3334699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHh
Q 000607 1229 CYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSI 1308 (1396)
Q Consensus 1229 ~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~ 1308 (1396)
+|+.+|.++||++||+.++..... .....+|++||+|||+|||||+|+|+ +.+++|+
T Consensus 89 ~La~ia~~lgL~~~i~~~~~~~~~---------------------~~~~~~~ilad~~EAliGAiylD~G~--~~a~~~i 145 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGSDVKKL---------------------TGKRLLNVRADVVEALIAAIYLDGGL--EAARPFI 145 (235)
T ss_pred HHHHHHHHCCcHHHhccCcchhhc---------------------CCcccchHHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 999999999999999988643211 01235799999999999999999987 6899999
Q ss_pred hhccccccCc-ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1309 RPLLEPMITP-ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1309 ~~~l~~~~~~-~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
.+++.+.+.. .....|||++|+||||+.+...|.|+...+.|+ ..|+|+|+++|..++ +|.|.|||+|++.||+.
T Consensus 146 ~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~-~g~G~sKK~Ae~~AA~~ 224 (235)
T PRK12371 146 QRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPE-TGEGRSKRAAEQVAAEK 224 (235)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEE-EeeeCCHHHHHHHHHHH
Confidence 9998876643 234579999999999988776677877665554 579999999999988 89999999999999999
Q ss_pred HHHHhhh
Q 000607 1385 VLKSLRA 1391 (1396)
Q Consensus 1385 AL~~L~~ 1391 (1396)
||++|+.
T Consensus 225 al~~~~~ 231 (235)
T PRK12371 225 MLEREGV 231 (235)
T ss_pred HHHHhhh
Confidence 9999875
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=382.13 Aligned_cols=218 Identities=27% Similarity=0.381 Sum_probs=191.0
Q ss_pred HHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHH
Q 000607 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCY 1230 (1396)
Q Consensus 1151 ~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~L 1230 (1396)
+..||++|||+|+|+.||.+||||+||. ..+|||||||||+||+++|++|||.+||++++|+||.+|+.+|||.+|
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~----~~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHS----ATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccccc----cccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 5679999999999999999999999986 248999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1231 ALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1231 a~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+.+|.++||.+||+++.++... .....+++|+|+|||+|||||+|+|+ +.++.|+.+
T Consensus 79 A~IA~~LgL~~~Lrlg~ge~~s---------------------gg~~~~kILADvfEALIGAIYLDsG~--e~a~~fV~~ 135 (413)
T PRK12372 79 YEIAQALNISEGLRLGEGELRS---------------------GGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKR 135 (413)
T ss_pred HHHHHHcCchHhhhcCcchhhc---------------------CCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 9999999999999988765321 11346899999999999999999987 589999999
Q ss_pred ccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1311 LLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1311 ~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
++.|++.. .....|||+.||||||+++...+.|.+..+.|+ ..|+|.|+++|..+..+|.|.|||+|++.||+.
T Consensus 136 ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~ 215 (413)
T PRK12372 136 LYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKK 215 (413)
T ss_pred HHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHH
Confidence 98887653 234579999999999999988888887665553 569999999996553389999999999999999
Q ss_pred HHHHhhhhCCC
Q 000607 1385 VLKSLRASFPG 1395 (1396)
Q Consensus 1385 AL~~L~~~~~~ 1395 (1396)
||++|+...|.
T Consensus 216 AL~kL~~~~~~ 226 (413)
T PRK12372 216 ALDEVMAAAPM 226 (413)
T ss_pred HHHHHhcccch
Confidence 99999976664
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=382.34 Aligned_cols=217 Identities=27% Similarity=0.388 Sum_probs=190.7
Q ss_pred HHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHH
Q 000607 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCY 1230 (1396)
Q Consensus 1151 ~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~L 1230 (1396)
+..||++|||+|+|+.||.+||||+||. ..+|||||||||+||+++|++|||.+||++++|+||.+|+.+|||++|
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys----~e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHS----ATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcC----cccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 5679999999999999999999999996 258999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1231 ALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1231 a~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+.+|.++||++||+.+.++... .....+++|+|+|||||||||+|+|+ +.+++|+.+
T Consensus 79 A~IAr~LGL~d~Lrlg~gE~~s---------------------gG~~~~sILADvFEALIGAIYLDsG~--e~a~~fI~~ 135 (467)
T PRK14718 79 YEIAQALNISDGLRLGEGELRS---------------------GGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKR 135 (467)
T ss_pred HHHHHHcCchHHHhhCCccccc---------------------CCCCChhHHHHHHHHHHHHHHHccCH--HHHHHHHHH
Confidence 9999999999999988764321 11346899999999999999999997 689999999
Q ss_pred ccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1311 LLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1311 ~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
+|.+++.. .....|||+.||||||++++..+.|.+..+.|+ ..|+|.|+++|..+.+.|.|.|||+|++.||+.
T Consensus 136 ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~ 215 (467)
T PRK14718 136 LYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKK 215 (467)
T ss_pred HHHHHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHH
Confidence 99887643 234579999999999999998888887766553 569999999996553389999999999999999
Q ss_pred HHHHhhhhCC
Q 000607 1385 VLKSLRASFP 1394 (1396)
Q Consensus 1385 AL~~L~~~~~ 1394 (1396)
||++|+...|
T Consensus 216 AL~kL~~~~~ 225 (467)
T PRK14718 216 ALDEVTAVAP 225 (467)
T ss_pred HHHHhcccch
Confidence 9999986544
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=360.57 Aligned_cols=332 Identities=24% Similarity=0.305 Sum_probs=260.9
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCe
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~ 95 (1396)
..|.+.|.++++.++.| ++|..+.||||||.++++.|. ..++..+...+++||+|||+|+.|.++.++.+ +|++
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl--~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr 159 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL--QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLR 159 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH--HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeE
Confidence 45899999999999998 899999999999999998554 34456777789999999999999999999887 4899
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh-hcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR-LSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
+..+.|+++.. .+-....+.++|+|+||+.|++.+. -+.+++.++.++|+|||+++.+. .+...+..++...
T Consensus 160 ~~~lvGG~~m~----~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~i-- 232 (476)
T KOG0330|consen 160 VAVLVGGMDMM----LQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKVI-- 232 (476)
T ss_pred EEEEecCchHH----HHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHhc--
Confidence 99999997654 3445667789999999999999998 56789999999999999999985 5666666665322
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....+.+++|||...+ +.+|+. .++. |..... .. .
T Consensus 233 ---p~erqt~LfsATMt~k------------v~kL~rasl~~-----------------p~~v~~--s~----------k 268 (476)
T KOG0330|consen 233 ---PRERQTFLFSATMTKK------------VRKLQRASLDN-----------------PVKVAV--SS----------K 268 (476)
T ss_pred ---CccceEEEEEeecchh------------hHHHHhhccCC-----------------CeEEec--cc----------h
Confidence 3446789999997552 334431 1111 111100 00 0
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
.+.+..+..
T Consensus 269 y~tv~~lkQ----------------------------------------------------------------------- 277 (476)
T KOG0330|consen 269 YQTVDHLKQ----------------------------------------------------------------------- 277 (476)
T ss_pred hcchHHhhh-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
.++... ...|...|+.+|++. .+...||||++..++..++-+|+.+
T Consensus 278 -----------~ylfv~-----------------~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~l--- 323 (476)
T KOG0330|consen 278 -----------TYLFVP-----------------GKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNL--- 323 (476)
T ss_pred -----------heEecc-----------------ccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhc---
Confidence 000000 034556788888874 4588999999999999999999985
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|+.+..+||. |++..|...+++|++|.++|||||+|+++|+|||.+++|||||.|.+..+||||.||++|.|
T Consensus 324 --g~~a~~LhGq------msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 324 --GFQAIPLHGQ------MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred --Ccceecccch------hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 8999999998 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CcEEEEEecCCcchHHHHHHHHHH
Q 000607 494 --SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 494 --s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
+..+.+|+..|.+..++|+..+..
T Consensus 396 rsG~~ItlVtqyDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRIEHALGK 421 (476)
T ss_pred CCcceEEEEehhhhHHHHHHHHHHhc
Confidence 689999998877777777766543
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=413.57 Aligned_cols=452 Identities=25% Similarity=0.309 Sum_probs=299.3
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---e
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL---K 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~---~ 95 (1396)
...+|+||.+++..++++|+||++|||+|||++|++++..+.. ..++++|||+||++|+.||.+.++++++. +
T Consensus 13 ~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 4569999999999999999999999999999999988876542 34578999999999999999999998765 7
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|+...+ .......+++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.|..++..|..
T Consensus 89 v~~~~g~~~~~-----~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~----- 158 (773)
T PRK13766 89 IVVFTGEVSPE-----KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE----- 158 (773)
T ss_pred EEEEeCCCCHH-----HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHh-----
Confidence 88888875432 23344557899999999999988888888999999999999999999999999988873
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEec--cChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC--ASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~--~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....|+++||||||.... ..+..+..+|+...... .....+..+...+....+ ....+.... .+
T Consensus 159 -~~~~~~il~lTaTP~~~~---------~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~---~v~l~~~~~-~i 224 (773)
T PRK13766 159 -DAKNPLVLGLTASPGSDE---------EKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV---RVELPEELK-EI 224 (773)
T ss_pred -cCCCCEEEEEEcCCCCCH---------HHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE---EeCCcHHHH-HH
Confidence 245789999999997532 35667777776554432 233455555554332222 223344332 24
Q ss_pred HHHHHHHHHHHHhhhhhhchh--------hHHHHHHHHHHHHHHHH--------HH------------HHHHhHHHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLN--------EAQAELIRKKVSKINST--------LL------------YCLSELGVWLAL 305 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~--------~~------------~~~~~lg~~~a~ 305 (1396)
...+....+.....+...+.. ...+....+.+.+.+.. .. ..+...|.....
T Consensus 225 ~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 304 (773)
T PRK13766 225 RDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALR 304 (773)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 444444433333333322211 01111111111111100 00 000000111000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHH-HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-c
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIK-KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY-R 383 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~-~ 383 (1396)
.....+...... .+ .......+.. .........+.. ....+||+..|.++|.+. .
T Consensus 305 ~y~~~l~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~-------------------~~~~~pK~~~L~~il~~~~~ 361 (773)
T PRK13766 305 RYLERLREEARS---SG-GSKASKRLVEDPRFRKAVRKAKE-------------------LDIEHPKLEKLREIVKEQLG 361 (773)
T ss_pred HHHHHHHhhccc---cC-CcHHHHHHHhCHHHHHHHHHHHh-------------------cccCChHHHHHHHHHHHHHh
Confidence 000000000000 00 0000000000 000001000100 112379999999999884 3
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCC--cCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~--~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
..++.++||||+++.++..|.+.|.. .++++..++|..+. ..+|++.+|.+++++|++|++++||||++++||
T Consensus 362 ~~~~~kvlIF~~~~~t~~~L~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eG 436 (773)
T PRK13766 362 KNPDSRIIVFTQYRDTAEKIVDLLEK-----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEG 436 (773)
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHh-----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 35788999999999999999999975 47888899996432 246899999999999999999999999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHHHHHHh
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLS 527 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~~ 527 (1396)
+|+|+|++||+||+|+|+..|+||+||+||.| +++++|+..+..+. +.+......|+.|.+...+
T Consensus 437 ldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee-~~y~~~~~ke~~~~~~l~~ 502 (773)
T PRK13766 437 LDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDE-AYYWSSRRKEKKMKEELKN 502 (773)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHH-HHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999976 57788887665433 3344444566677655433
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=375.88 Aligned_cols=342 Identities=20% Similarity=0.227 Sum_probs=256.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHH-HHHHHHH---HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIM-LLRSYAY---LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iail-li~~l~~---~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
...|.++|...+..++.| |+|..+.||||||+.+++ +|.++.. ....+.++++|+|+|||+|+.|..+++..+.
T Consensus 111 ~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~ 190 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK 190 (519)
T ss_pred CCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC
Confidence 445999999999999998 899999999999999998 4444432 1123468899999999999999999999886
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++..+++|+.... .+......+.+|+|+||++|.++++.+.+.++++.++|+|||+++.+.. +..-++....
T Consensus 191 ~~~~~~~cvyGG~~~~----~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG-Fe~qI~~Il~ 265 (519)
T KOG0331|consen 191 SLRLRSTCVYGGAPKG----PQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG-FEPQIRKILS 265 (519)
T ss_pred CCCccEEEEeCCCCcc----HHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc-cHHHHHHHHH
Confidence 46688899985443 4556666689999999999999999999999999999999999999753 3333333332
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
. ......+.+..|||=.. .+..|...+ ...|....+-... +
T Consensus 266 ~----i~~~~rQtlm~saTwp~------------~v~~lA~~f----------------l~~~~~i~ig~~~-----~-- 306 (519)
T KOG0331|consen 266 Q----IPRPDRQTLMFSATWPK------------EVRQLAEDF----------------LNNPIQINVGNKK-----E-- 306 (519)
T ss_pred h----cCCCcccEEEEeeeccH------------HHHHHHHHH----------------hcCceEEEecchh-----h--
Confidence 2 11222258888988532 122222111 1111111110000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
+
T Consensus 307 ------~------------------------------------------------------------------------- 307 (519)
T KOG0331|consen 307 ------L------------------------------------------------------------------------- 307 (519)
T ss_pred ------h-------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.+... +.+.+.......|...|.++|..+......|+||||+++.+++.|...|+.
T Consensus 308 -------~a~~~----------------i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~- 363 (519)
T KOG0331|consen 308 -------KANHN----------------IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR- 363 (519)
T ss_pred -------hhhcc----------------hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh-
Confidence 00000 000011111267888899999987666788999999999999999999996
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++++..+||+. ++.+|..+|+.||+|+.+|||||+|+++|||||++++||+||+|.+..+|+||.||+|
T Consensus 364 ----~~~~a~~iHGd~------sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 364 ----KGWPAVAIHGDK------SQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTG 433 (519)
T ss_pred ----cCcceeeecccc------cHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccc
Confidence 379999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHHHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
|+| +..+.|++..+......+.+.++.
T Consensus 434 Ra~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 434 RAGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred cCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 976 577888887766666666555533
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=390.20 Aligned_cols=337 Identities=20% Similarity=0.196 Sum_probs=244.0
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHHH--hcCCCCcEEEEEeCCcccHHHHHHHHHHhc--
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAYL--LRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~~--~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+ .++... .....+.++||||||++||.|+.+.++++.
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 345999999999999997 89999999999999998743 333221 112346789999999999999999998865
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++++..++|+.... .++.....+++|+|+||++|.+++.++...++++++||+||||++.+.. |...+......
T Consensus 230 ~~i~~~~~~gg~~~~----~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g-f~~~i~~il~~ 304 (545)
T PTZ00110 230 SKIRNTVAYGGVPKR----GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVSQ 304 (545)
T ss_pred cCccEEEEeCCCCHH----HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc-hHHHHHHHHHh
Confidence 57788888875432 3445555689999999999999999988899999999999999998753 33333333321
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.....+++++|||... .+..+...+- ..... +..........
T Consensus 305 -----~~~~~q~l~~SAT~p~------------~v~~l~~~l~~~~~v~------------------i~vg~~~l~~~-- 347 (545)
T PTZ00110 305 -----IRPDRQTLMWSATWPK------------EVQSLARDLCKEEPVH------------------VNVGSLDLTAC-- 347 (545)
T ss_pred -----CCCCCeEEEEEeCCCH------------HHHHHHHHHhccCCEE------------------EEECCCccccC--
Confidence 1234689999999743 1222222211 00000 00000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
.
T Consensus 348 ~------------------------------------------------------------------------------- 348 (545)
T PTZ00110 348 H------------------------------------------------------------------------------- 348 (545)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.+...+.......|...|.++|.... ..+.++||||+++.+++.|++.|..
T Consensus 349 ---------------------------~i~q~~~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~- 399 (545)
T PTZ00110 349 ---------------------------NIKQEVFVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL- 399 (545)
T ss_pred ---------------------------CeeEEEEEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH-
Confidence 00000000001345556666666542 2567999999999999999999985
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.+..+|+||+||+|
T Consensus 400 ----~g~~~~~ihg~------~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 400 ----DGWPALCIHGD------KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ----cCCcEEEEECC------CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 47889999997 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
|.| +.+++|++.++......+.+.+
T Consensus 470 R~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred cCCCCceEEEEECcchHHHHHHHHHHH
Confidence 987 5788888876555444444443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=387.74 Aligned_cols=334 Identities=22% Similarity=0.262 Sum_probs=239.9
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
...|+++|.++++.++.+ |+|+++|||||||+++++.+. ++.... ....+.+++||+||++|+.|+.+.++.+.
T Consensus 141 ~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 456999999999999997 899999999999999998543 332211 12256789999999999999888877653
Q ss_pred ---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 ---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 ---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++..+.|+.... ........+++|+|+||++|.+++..+.+.++++++||+||||++.+.+-...++ ...
T Consensus 221 ~~~~~~~~~~~gG~~~~----~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~-~i~ 295 (518)
T PLN00206 221 KGLPFKTALVVGGDAMP----QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM-QIF 295 (518)
T ss_pred CCCCceEEEEECCcchH----HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH-HHH
Confidence 56777777764432 2233344578999999999999999888899999999999999998764333333 232
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
.. ...++++++|||... .+..+...+......+ .......+...
T Consensus 296 ~~------l~~~q~l~~SATl~~------------~v~~l~~~~~~~~~~i------------------~~~~~~~~~~~ 339 (518)
T PLN00206 296 QA------LSQPQVLLFSATVSP------------EVEKFASSLAKDIILI------------------SIGNPNRPNKA 339 (518)
T ss_pred Hh------CCCCcEEEEEeeCCH------------HHHHHHHHhCCCCEEE------------------EeCCCCCCCcc
Confidence 11 134789999999854 2333333322211110 00000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 340 -------------------------------------------------------------------------------- 339 (518)
T PLN00206 340 -------------------------------------------------------------------------------- 339 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
+...........|...|.++|.... ....++||||+++..++.+++.|..
T Consensus 340 -----------------------------v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 340 -----------------------------VKQLAIWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred -----------------------------eeEEEEeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhh
Confidence 0000000000234455666665432 2245899999999999999999975
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
. .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||
T Consensus 390 ~----~g~~~~~~Hg~------~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 390 V----TGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred c----cCcceEEeeCC------CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 3 47889999997 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRLEN 513 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i~~ 513 (1396)
||.| |.+++|++.++......+.+
T Consensus 460 GR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 460 SRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred ccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 9987 57888887665444444433
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=384.63 Aligned_cols=336 Identities=21% Similarity=0.223 Sum_probs=241.2
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-----KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-----~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.....|.++|.++++.++++ |+|+.+|||||||+++++.+........ ...+.+++|||||++|+.|+++.++.
T Consensus 26 ~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 34456899999999999998 8999999999999999875543222111 12356899999999999999887775
Q ss_pred h---cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 91 H---TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 91 ~---~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
+ .++++..++|+.+.+ ..+.....+++|+|+||++|.+.+..+.+.+++++++|+||||++.+.. |...+..
T Consensus 106 l~~~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-f~~~i~~ 180 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYD----KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-FIKDIRW 180 (423)
T ss_pred HhccCCceEEEEECCCCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc-cHHHHHH
Confidence 4 478999999975543 2333444578999999999999999999999999999999999998753 3344444
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.+... ........+++|||+... +..+. ..+....+. . .......
T Consensus 181 i~~~~---~~~~~~~~~l~SAT~~~~------------~~~~~~~~~~~p~~i-----------------~--v~~~~~~ 226 (423)
T PRK04837 181 LFRRM---PPANQRLNMLFSATLSYR------------VRELAFEHMNNPEYV-----------------E--VEPEQKT 226 (423)
T ss_pred HHHhC---CCccceeEEEEeccCCHH------------HHHHHHHHCCCCEEE-----------------E--EcCCCcC
Confidence 44221 111223468999997431 21221 112111110 0 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 227 ~~------------------------------------------------------------------------------ 228 (423)
T PRK04837 227 GH------------------------------------------------------------------------------ 228 (423)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+...........|...|.+++... ...++||||+++..++.++..
T Consensus 229 -------------------------------~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~ 274 (423)
T PRK04837 229 -------------------------------RIKEELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGH 274 (423)
T ss_pred -------------------------------ceeEEEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHH
Confidence 0000000000134556666666542 457899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.. .++++..+||+ |++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+
T Consensus 275 L~~-----~g~~v~~lhg~------~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~ 343 (423)
T PRK04837 275 LAA-----DGHRVGLLTGD------VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 343 (423)
T ss_pred HHh-----CCCcEEEecCC------CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecc
Confidence 986 48899999997 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecCCcchHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGDSTTQSRLENY 514 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~~~~~~~i~~~ 514 (1396)
|||||.| +.++.|+.+++......++++
T Consensus 344 GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~ 373 (423)
T PRK04837 344 GRTGRAGASGHSISLACEEYALNLPAIETY 373 (423)
T ss_pred ccccCCCCCeeEEEEeCHHHHHHHHHHHHH
Confidence 9999998 578888876544444444433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=380.91 Aligned_cols=331 Identities=19% Similarity=0.195 Sum_probs=236.6
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR----KPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
....|+++|.++++.++++ |+|+.+|||||||+++++.+.+...... .....++||||||++|+.|+.+.++.+.
T Consensus 20 g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 3456999999999999997 8999999999999999986554332111 1123579999999999999999998754
Q ss_pred ---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 ---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 ---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++..++|+.+.+ ..+......++|+|+||+.|++.+.+..+.++++++||+||||++.+..-+..+ ...+
T Consensus 100 ~~~~~~~~~~~gg~~~~----~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i-~~il 174 (456)
T PRK10590 100 KYLNIRSLVVFGGVSIN----PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI-RRVL 174 (456)
T ss_pred ccCCCEEEEEECCcCHH----HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHH-HHHH
Confidence 67888888886543 234445567899999999999999888889999999999999999875433332 2222
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCcceeEeccCCCCchh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHA 248 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~ 248 (1396)
.. .....+++++|||+.. .+..+...+ ..... ..+.... .....
T Consensus 175 ~~-----l~~~~q~l~~SAT~~~------------~~~~l~~~~~~~~~~-----------------i~~~~~~-~~~~~ 219 (456)
T PRK10590 175 AK-----LPAKRQNLLFSATFSD------------DIKALAEKLLHNPLE-----------------IEVARRN-TASEQ 219 (456)
T ss_pred Hh-----CCccCeEEEEeCCCcH------------HHHHHHHHHcCCCeE-----------------EEEeccc-ccccc
Confidence 11 1234578999999843 222332222 11110 0000000 00000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccch
Q 000607 249 LYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFG 328 (1396)
Q Consensus 249 ~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1396)
+..
T Consensus 220 i~~----------------------------------------------------------------------------- 222 (456)
T PRK10590 220 VTQ----------------------------------------------------------------------------- 222 (456)
T ss_pred eeE-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHH
Q 000607 329 ETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLS 408 (1396)
Q Consensus 329 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 408 (1396)
.. . ......|...|..++.. ....++||||+++..+..++..|.
T Consensus 223 -----------------~~------~----------~~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 223 -----------------HV------H----------FVDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred -----------------EE------E----------EcCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 00 0 00001222233333322 345689999999999999999998
Q ss_pred hhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhc
Q 000607 409 ELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488 (1396)
Q Consensus 409 ~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GR 488 (1396)
. .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||.||
T Consensus 267 ~-----~g~~~~~lhg~------~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 267 K-----DGIRSAAIHGN------KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred H-----CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 6 47899999997 699999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--CcEEEEEecCCcchHHHHH
Q 000607 489 ARMQN--SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 489 A~R~g--s~~i~lv~~~~~~~~~~i~ 512 (1396)
|||.| +.+++++..++....+.++
T Consensus 336 aGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 336 TGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred cccCCCCeeEEEEecHHHHHHHHHHH
Confidence 99987 5777777655433333333
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=378.44 Aligned_cols=320 Identities=19% Similarity=0.216 Sum_probs=237.8
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----C
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----D 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~ 93 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+..... ......+++|||||++|+.|+++.++.+. +
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~--~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLD--VKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhh--hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 445899999999999998 8999999999999998886654332 12234579999999999999999998753 6
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..++|+.+.+ ..+.....+++|+|+||++|.+.+.++.+.++++++||+||||++.+.. |...+......
T Consensus 102 ~~v~~~~Gg~~~~----~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g-~~~~l~~i~~~-- 174 (460)
T PRK11776 102 IKVLTLCGGVPMG----PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG-FQDAIDAIIRQ-- 174 (460)
T ss_pred cEEEEEECCCChH----HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC-cHHHHHHHHHh--
Confidence 8899999986553 2333444578999999999999999888889999999999999998653 33333333321
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....+++++|||+.. .+..+...+.. .|....+ ........+
T Consensus 175 ---~~~~~q~ll~SAT~~~------------~~~~l~~~~~~----------------~~~~i~~--~~~~~~~~i---- 217 (460)
T PRK11776 175 ---APARRQTLLFSATYPE------------GIAAISQRFQR----------------DPVEVKV--ESTHDLPAI---- 217 (460)
T ss_pred ---CCcccEEEEEEecCcH------------HHHHHHHHhcC----------------CCEEEEE--CcCCCCCCe----
Confidence 2334679999999853 23333222211 1110000 000000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 218 -------------------------------------------------------------------------------- 217 (460)
T PRK11776 218 -------------------------------------------------------------------------------- 217 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
.+.........|...|.++|... ...++||||+++..+..+++.|..
T Consensus 218 --------------------------~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~---- 264 (460)
T PRK11776 218 --------------------------EQRFYEVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNA---- 264 (460)
T ss_pred --------------------------eEEEEEeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHh----
Confidence 00000000033666666766553 456899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++.+..+||+ |++.+|++++++|++|++++||||+++++|||+|++++||+||.|.+..+|+||.|||||.|
T Consensus 265 -~~~~v~~~hg~------~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g 337 (460)
T PRK11776 265 -QGFSALALHGD------LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAG 337 (460)
T ss_pred -CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCC
Confidence 37899999997 69999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++.++..++
T Consensus 338 ~~G~ai~l~~~~e 350 (460)
T PRK11776 338 SKGLALSLVAPEE 350 (460)
T ss_pred CcceEEEEEchhH
Confidence 46777776553
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=375.85 Aligned_cols=335 Identities=21% Similarity=0.252 Sum_probs=240.8
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHh-cCCCCcEEEEEeCCcccHHHHHHHHHHh--
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLL-RKPSPFVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~-~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
.....|+++|.++++.++++ |+|+++|||+|||+++++.+.. +.... ...+..+++||+||++|+.|+++.++.+
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 33456999999999999998 8999999999999999885543 32211 1223568999999999999988877754
Q ss_pred -cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 92 -TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 92 -~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++++..++|+.... ........+++|+|+||++|++.+.++.+.+.++++|||||||++.+. .+...+.....
T Consensus 99 ~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~ 173 (434)
T PRK11192 99 HTHLDIATITGGVAYM----NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAA 173 (434)
T ss_pred cCCcEEEEEECCCCHH----HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHH
Confidence 578999999986543 122233447899999999999999988888999999999999999864 34444444432
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
. .....+++++|||+... .+..+...+......+ .........
T Consensus 174 ~-----~~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~~~~~i------------------~~~~~~~~~--- 216 (434)
T PRK11192 174 E-----TRWRKQTLLFSATLEGD-----------AVQDFAERLLNDPVEV------------------EAEPSRRER--- 216 (434)
T ss_pred h-----CccccEEEEEEeecCHH-----------HHHHHHHHHccCCEEE------------------EecCCcccc---
Confidence 1 23456899999998431 1222222221100000 000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
. .
T Consensus 217 ~--------------------~---------------------------------------------------------- 218 (434)
T PRK11192 217 K--------------------K---------------------------------------------------------- 218 (434)
T ss_pred c--------------------C----------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
+... .. .......|...|.+++.. ....++||||+++..+..++..|+.
T Consensus 219 ------------i~~~-------~~--------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~- 267 (434)
T PRK11192 219 ------------IHQW-------YY--------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK- 267 (434)
T ss_pred ------------ceEE-------EE--------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh-
Confidence 0000 00 000013455556665543 3467999999999999999999986
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++++..+||. |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||.||+|
T Consensus 268 ----~~~~~~~l~g~------~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~g 337 (434)
T PRK11192 268 ----AGINCCYLEGE------MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTG 337 (434)
T ss_pred ----CCCCEEEecCC------CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccc
Confidence 37899999997 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~ 512 (1396)
|.| +.++++++..|......++
T Consensus 338 R~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 338 RAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred cCCCCceEEEEecHHHHHHHHHHH
Confidence 988 4678887755444444443
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=346.15 Aligned_cols=218 Identities=33% Similarity=0.486 Sum_probs=190.9
Q ss_pred hHHHHHHHcCcccCCHHHHHHHhccCCCCC-CCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCch
Q 000607 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYML-PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNND 1228 (1396)
Q Consensus 1150 ~~~~le~~lgy~f~~~~ll~~Alth~S~~~-~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~ 1228 (1396)
++..||++|||+|+|+.|+.+||||||+.. .....+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.
T Consensus 4 ~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~ 83 (229)
T PRK00102 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREE 83 (229)
T ss_pred hHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHH
Confidence 578899999999999999999999999963 2356799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHh
Q 000607 1229 CYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSI 1308 (1396)
Q Consensus 1229 ~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~ 1308 (1396)
+|+.+|.++||+++|++++..... .....+|+++|+|||+|||||+|+|. +.+++|+
T Consensus 84 ~la~~a~~lgl~~~i~~~~~~~~~---------------------~~~~~~k~~ad~~EA~iGAiyld~g~--~~~~~~i 140 (229)
T PRK00102 84 SLAEIARELGLGEYLLLGKGEEKS---------------------GGRRRPSILADAFEALIGAIYLDQGL--EAARKFI 140 (229)
T ss_pred HHHHHHHHCCcHHHHccCcHHHHc---------------------CCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 999999999999999988753211 01246899999999999999999986 6899999
Q ss_pred hhccccccCcc---cccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHH
Q 000607 1309 RPLLEPMITPE---TMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVAC 1382 (1396)
Q Consensus 1309 ~~~l~~~~~~~---~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA 1382 (1396)
.+++.|++... ....||++.|+++|++.++..+.|++....| .+.|+|+|+++|..++ +|.|.|+|+||+.||
T Consensus 141 ~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~skk~Ae~~AA 219 (229)
T PRK00102 141 LRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELG-EGTGSSKKEAEQAAA 219 (229)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEE-EeeeCCHHHHHHHHH
Confidence 99888876542 3458999999999999888777777655544 3579999999999988 899999999999999
Q ss_pred HHHHHHhhh
Q 000607 1383 KEVLKSLRA 1391 (1396)
Q Consensus 1383 ~~AL~~L~~ 1391 (1396)
+.||+.|+.
T Consensus 220 ~~Al~~l~~ 228 (229)
T PRK00102 220 KQALKKLKE 228 (229)
T ss_pred HHHHHHHhh
Confidence 999999975
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=370.64 Aligned_cols=324 Identities=19% Similarity=0.214 Sum_probs=230.1
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHhc----CCCCcEEEEEeCCcccHHHHHHHHHHh--
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLLR----KPSPFVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
..|+++|.++++.+++| |+|+++|||||||+++++.+.. +..... ..+..++|||+||++|+.|+.+.++.+
T Consensus 108 ~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~ 187 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK 187 (475)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc
Confidence 44899999999999998 8999999999999999885433 322100 012468999999999999999988875
Q ss_pred -cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 92 -TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 92 -~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++++..++|+...+ .+........++|+|+||++|++.+.++...++++++||+||||++.+.+- ...+.....
T Consensus 188 ~~~~~v~~~~gg~~~~---~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~-~~~l~~i~~ 263 (475)
T PRK01297 188 YTGLNVMTFVGGMDFD---KQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGF-IPQVRQIIR 263 (475)
T ss_pred cCCCEEEEEEccCChH---HHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhccc-HHHHHHHHH
Confidence 478888899875332 122222234689999999999999988888899999999999999987532 222222221
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
.. .....++++++|||.... +..+. .++...... . ..........
T Consensus 264 ~~---~~~~~~q~i~~SAT~~~~------------~~~~~~~~~~~~~~v-----------------~--~~~~~~~~~~ 309 (475)
T PRK01297 264 QT---PRKEERQTLLFSATFTDD------------VMNLAKQWTTDPAIV-----------------E--IEPENVASDT 309 (475)
T ss_pred hC---CCCCCceEEEEEeecCHH------------HHHHHHHhccCCEEE-----------------E--eccCcCCCCc
Confidence 11 112345899999997431 11221 111111100 0 0000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 310 -------------------------------------------------------------------------------- 309 (475)
T PRK01297 310 -------------------------------------------------------------------------------- 309 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
..........+.|...|.+++.. ....++||||+++.+++.++..|..
T Consensus 310 -----------------------------~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~ 357 (475)
T PRK01297 310 -----------------------------VEQHVYAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVK 357 (475)
T ss_pred -----------------------------ccEEEEEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 00000000013345555555544 2456899999999999999999986
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.++.+..++|. |++.+|.+++++|++|++++||||+++++|||||++++||+||.|.|..+|+||.|||
T Consensus 358 -----~~~~~~~~~g~------~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 358 -----DGINAAQLSGD------VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRT 426 (475)
T ss_pred -----cCCCEEEEECC------CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCcc
Confidence 37888899987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCC
Q 000607 490 RMQN--SDYLLMVKSGD 504 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~ 504 (1396)
||.| |..++++..+|
T Consensus 427 GR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 427 GRAGASGVSISFAGEDD 443 (475)
T ss_pred CCCCCCceEEEEecHHH
Confidence 9988 46777776543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=377.03 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=232.8
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
....|+++|.++++.++++ |+|+.+|||||||+++++.+.+ +.... ......++|||+||++|+.|+++.++++
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 3456999999999999998 8999999999999999885543 22110 1113468999999999999999998876
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
. ++++..++|+...+ ........+++|+|+||+.|++.+.+. .+.+..+++|||||||++.+.. +...+..
T Consensus 108 ~~~~~i~v~~l~Gg~~~~----~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g-f~~~i~~ 182 (572)
T PRK04537 108 GADLGLRFALVYGGVDYD----KQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG-FIKDIRF 182 (572)
T ss_pred hccCCceEEEEECCCCHH----HHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc-hHHHHHH
Confidence 4 68899999975433 112222346899999999999988764 5778899999999999998653 3333333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHH-HHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDL-ETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~L-e~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..... ......+++++|||.... +..+ ...+.. |....+.... ..
T Consensus 183 il~~l---p~~~~~q~ll~SATl~~~------------v~~l~~~~l~~-----------------p~~i~v~~~~--~~ 228 (572)
T PRK04537 183 LLRRM---PERGTRQTLLFSATLSHR------------VLELAYEHMNE-----------------PEKLVVETET--IT 228 (572)
T ss_pred HHHhc---ccccCceEEEEeCCccHH------------HHHHHHHHhcC-----------------CcEEEecccc--cc
Confidence 33211 111245799999997431 1111 111111 1100000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 229 ~~------------------------------------------------------------------------------ 230 (572)
T PRK04537 229 AA------------------------------------------------------------------------------ 230 (572)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+...+.......|+..|..++.. ..+.++||||+++..++.|++.
T Consensus 231 -------------------------------~i~q~~~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~ 276 (572)
T PRK04537 231 -------------------------------RVRQRIYFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVART 276 (572)
T ss_pred -------------------------------ceeEEEEecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHH
Confidence 000000000013455556666554 3567899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.+ .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+
T Consensus 277 L~~-----~g~~v~~lhg~------l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 277 LER-----HGYRVGVLSGD------VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred HHH-----cCCCEEEEeCC------CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 986 37899999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecC
Q 000607 487 GRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~ 503 (1396)
||+||.| +.++.|+...
T Consensus 346 GRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 346 GRTARLGEEGDAISFACER 364 (572)
T ss_pred cccccCCCCceEEEEecHH
Confidence 9999987 5788887644
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=374.19 Aligned_cols=321 Identities=19% Similarity=0.201 Sum_probs=235.5
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---- 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---- 92 (1396)
....|+++|.++++.++++ |+|+.+|||||||.++++.+.+... ......++||||||++|+.|+++.++.+.
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~--~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhh--hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4556999999999999997 8999999999999999876543322 12245689999999999999999988763
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
++++..++|+...+ ........+++|+|+||+.|++.+.++.+.++++.+||+||||++....-...+ .....
T Consensus 103 ~i~v~~~~gG~~~~----~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di-~~Il~-- 175 (629)
T PRK11634 103 GVNVVALYGGQRYD----VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV-ETIMA-- 175 (629)
T ss_pred CceEEEEECCcCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHH-HHHHH--
Confidence 68888888875433 122333347899999999999999999899999999999999998864322222 22221
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
......+++++|||+... +..+...+ ...|....+.......+ .
T Consensus 176 ---~lp~~~q~llfSAT~p~~------------i~~i~~~~----------------l~~~~~i~i~~~~~~~~-~---- 219 (629)
T PRK11634 176 ---QIPEGHQTALFSATMPEA------------IRRITRRF----------------MKEPQEVRIQSSVTTRP-D---- 219 (629)
T ss_pred ---hCCCCCeEEEEEccCChh------------HHHHHHHH----------------cCCCeEEEccCccccCC-c----
Confidence 123456789999997431 22222211 11111110000000000 0
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
T Consensus 220 -------------------------------------------------------------------------------- 219 (629)
T PRK11634 220 -------------------------------------------------------------------------------- 219 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
+...........|...|.++|... ...++||||+++..+..|+..|..
T Consensus 220 --------------------------i~q~~~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~--- 267 (629)
T PRK11634 220 --------------------------ISQSYWTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER--- 267 (629)
T ss_pred --------------------------eEEEEEEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh---
Confidence 000000000134666677776552 456899999999999999999986
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||.|||||.
T Consensus 268 --~g~~~~~lhgd------~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRa 339 (629)
T PRK11634 268 --NGYNSAALNGD------MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 (629)
T ss_pred --CCCCEEEeeCC------CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCC
Confidence 47899999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--CcEEEEEecC
Q 000607 493 N--SDYLLMVKSG 503 (1396)
Q Consensus 493 g--s~~i~lv~~~ 503 (1396)
| +.+++++...
T Consensus 340 Gr~G~ai~~v~~~ 352 (629)
T PRK11634 340 GRAGRALLFVENR 352 (629)
T ss_pred CCcceEEEEechH
Confidence 8 5788888644
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=362.90 Aligned_cols=329 Identities=18% Similarity=0.206 Sum_probs=233.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+..... ....+.+++||+||++|+.|+.+.++.+. +.
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~--~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID--YDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhc--CCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 345999999999999998 8999999999999999876544322 22346789999999999999999888764 45
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
.+..+.|+.... ..|.....+.+|+|+||+.|.+.+.++...++++++||+||||++........+. ..+.
T Consensus 126 ~~~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~-~i~~---- 196 (401)
T PTZ00424 126 RCHACVGGTVVR----DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIY-DVFK---- 196 (401)
T ss_pred eEEEEECCcCHH----HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHH-HHHh----
Confidence 667777764322 3445555678999999999999999888889999999999999998654333333 3322
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.....++++++|||+... +..+.... ...|....+....... ...
T Consensus 197 -~~~~~~~~i~~SAT~~~~------------~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~----- 241 (401)
T PTZ00424 197 -KLPPDVQVALFSATMPNE------------ILELTTKF----------------MRDPKRILVKKDELTL-EGI----- 241 (401)
T ss_pred -hCCCCcEEEEEEecCCHH------------HHHHHHHH----------------cCCCEEEEeCCCCccc-CCc-----
Confidence 123457899999998541 11111111 0111110000000000 000
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.. .
T Consensus 242 --------------~~-----------------------------------------------~---------------- 244 (401)
T PTZ00424 242 --------------RQ-----------------------------------------------F---------------- 244 (401)
T ss_pred --------------eE-----------------------------------------------E----------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
. . .......+...+.+++.. ....++||||+++..++.+++.|.+
T Consensus 245 ------------~------~---------~~~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~----- 289 (401)
T PTZ00424 245 ------------Y------V---------AVEKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE----- 289 (401)
T ss_pred ------------E------E---------ecChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH-----
Confidence 0 0 000001122233333322 2356899999999999999999986
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
.++.+..+||. |++++|..++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||.|||||.|
T Consensus 290 ~~~~~~~~h~~------~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 290 RDFTVSCMHGD------MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 37889999997 69999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CcEEEEEecCCcchHHHH
Q 000607 494 -SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~~~i 511 (1396)
|.++.+++..+......+
T Consensus 364 ~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 364 KGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CceEEEEEcHHHHHHHHHH
Confidence 578888875544333333
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=320.78 Aligned_cols=334 Identities=21% Similarity=0.236 Sum_probs=251.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~ 94 (1396)
...|.|.|...++++++| |+|-++-||||||..+.+.|. ..+...|.+--++|+.||++|+.|.++.|.. ..++
T Consensus 27 i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil--~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 27 IKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL--NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH--HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 456999999999999998 899999999999999887554 4455677888999999999999999888875 4579
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
++..++|++..- .+-....++.+|+|+||+++.+.+... .+.+.++.++|+|||+++... .|..++..-..
T Consensus 105 K~~vivGG~d~i----~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~i~e 179 (442)
T KOG0340|consen 105 KVSVIVGGTDMI----MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEGIEE 179 (442)
T ss_pred eEEEEEccHHHh----hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhhhhc
Confidence 999999986543 223455568999999999999988754 356789999999999999875 67777766653
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEe-ccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKF-YKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~-y~~~~~~~~~ 249 (1396)
+. +...+-+++|||.... +.++ .+..+- .+....+. ++....+..+
T Consensus 180 ~l-----P~~RQtLlfSATitd~------------i~ql---~~~~i~-------------k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340|consen 180 CL-----PKPRQTLLFSATITDT------------IKQL---FGCPIT-------------KSIAFELEVIDGVSTVETL 226 (442)
T ss_pred cC-----CCccceEEEEeehhhH------------HHHh---hcCCcc-------------cccceEEeccCCCCchhhh
Confidence 21 2224689999997431 2122 211110 00000000 0110010000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
..
T Consensus 227 ~q------------------------------------------------------------------------------ 228 (442)
T KOG0340|consen 227 YQ------------------------------------------------------------------------------ 228 (442)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
.|+ .....-|-..|+.+|..|....+..++|||++..+++.|+..|+.
T Consensus 229 ----~yI----------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~ 276 (442)
T KOG0340|consen 229 ----GYI----------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN 276 (442)
T ss_pred ----hee----------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh
Confidence 000 000133445678888888655788899999999999999999997
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
+ ++++..+||. |++++|...+.+||++..++||||+|+++|+|||.+++|||||.|.++..||||.||+
T Consensus 277 l-----e~r~~~lHs~------m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 277 L-----EVRVVSLHSQ------MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred h-----ceeeeehhhc------chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 6 7899999998 7999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CcEEEEEecCCcchHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRLEN 513 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i~~ 513 (1396)
.|+| |..+.++++.|.+....|++
T Consensus 346 ARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 346 ARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred hcccCCcceEEEechhhHHHHHHHHH
Confidence 8877 67888888766655554443
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=334.32 Aligned_cols=212 Identities=34% Similarity=0.448 Sum_probs=184.4
Q ss_pred HHHHcCcccCCHHHHHHHhccCCCCCC--CCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHH
Q 000607 1154 LESLLNYSFRDPSLLVEALTHGSYMLP--EIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYA 1231 (1396)
Q Consensus 1154 le~~lgy~f~~~~ll~~Alth~S~~~~--~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La 1231 (1396)
||++|||+|+|+.|+.+||||||+... ....+|||||||||+||++++++|+|.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999999632 245699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhc
Q 000607 1232 LSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPL 1311 (1396)
Q Consensus 1232 ~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~ 1311 (1396)
.+|.++||+++|+..+..... .....+|+++|+|||+|||||+|+| ++.+++|+.++
T Consensus 81 ~~a~~~gl~~~i~~~~~~~~~---------------------~~~~~~k~~ad~~eAliGAiyld~g--~~~~~~~i~~~ 137 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEEKS---------------------GGRRRESILADAFEALIGAIYLDSG--LEAARKFILKL 137 (220)
T ss_pred HHHHHCCcHHHhccCchHhhc---------------------CCcccchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 999999999999988653211 0134689999999999999999999 57899999998
Q ss_pred cccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHH
Q 000607 1312 LEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEV 1385 (1396)
Q Consensus 1312 l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~A 1385 (1396)
+.|.+.. .....||++.|+++|++.+...+.|+.....| .+.|+|.|+++|..++ +|.|.|||+||+.||+.|
T Consensus 138 ~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~-~g~g~skk~A~~~AA~~A 216 (220)
T TIGR02191 138 LIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYG-EGKGKSKKEAEQNAAKAA 216 (220)
T ss_pred HHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEE-EeeeCCHHHHHHHHHHHH
Confidence 8887653 23458999999999998877666677655444 3579999999999998 899999999999999999
Q ss_pred HHHh
Q 000607 1386 LKSL 1389 (1396)
Q Consensus 1386 L~~L 1389 (1396)
|++|
T Consensus 217 l~~l 220 (220)
T TIGR02191 217 LEKL 220 (220)
T ss_pred HHhC
Confidence 9875
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=359.25 Aligned_cols=335 Identities=20% Similarity=0.229 Sum_probs=244.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCcccHHHHHHHHHHh---c
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFV-AVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~-vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
....|.++|..+++.++.+ |+|+.++||||||+++++.+-...... ...... ++||+||++|+.|.+++++.+ .
T Consensus 48 gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 48 GFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 3556999999999999997 899999999999999998554332211 122222 999999999999999988875 4
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++++..++|+.+.. .+-...-.+++|||+||++|++++.++.+.++++.++|+|||+++.+.+ +...+......
T Consensus 127 ~~~~~~~i~GG~~~~----~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G-f~~~i~~I~~~ 201 (513)
T COG0513 127 GGLRVAVVYGGVSIR----KQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG-FIDDIEKILKA 201 (513)
T ss_pred CCccEEEEECCCCHH----HHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC-CHHHHHHHHHh
Confidence 57889999986554 2223333369999999999999999999999999999999999999863 33333333221
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.....+++.+|||... .+..+...+ ...|....+.-.. ..
T Consensus 202 -----~p~~~qtllfSAT~~~------------~i~~l~~~~----------------l~~p~~i~v~~~~--~~----- 241 (513)
T COG0513 202 -----LPPDRQTLLFSATMPD------------DIRELARRY----------------LNDPVEIEVSVEK--LE----- 241 (513)
T ss_pred -----CCcccEEEEEecCCCH------------HHHHHHHHH----------------ccCCcEEEEcccc--cc-----
Confidence 1224679999999854 133332211 1111111110000 00
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
T Consensus 242 -------------------------------------------------------------------------------- 241 (513)
T COG0513 242 -------------------------------------------------------------------------------- 241 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCc-cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLL-TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.....+.+....... ..|+..|..++... ...++||||+++..+..|+..|..
T Consensus 242 ----------------------~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~- 295 (513)
T COG0513 242 ----------------------RTLKKIKQFYLEVESEEEKLELLLKLLKDE---DEGRVIVFVRTKRLVEELAESLRK- 295 (513)
T ss_pred ----------------------ccccCceEEEEEeCCHHHHHHHHHHHHhcC---CCCeEEEEeCcHHHHHHHHHHHHH-
Confidence 000000000000000 24888888888774 334799999999999999999997
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.|+++..+||+ |++.+|.+++++|++|+.+|||||+|+++|||||++++|||||+|.++..|+||+||+|
T Consensus 296 ----~g~~~~~lhG~------l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 296 ----RGFKVAALHGD------LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred ----CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccc
Confidence 48999999998 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecC-CcchHHHHHHH
Q 000607 491 MQN--SDYLLMVKSG-DSTTQSRLENY 514 (1396)
Q Consensus 491 R~g--s~~i~lv~~~-~~~~~~~i~~~ 514 (1396)
|.| |..+.|+... +......+++.
T Consensus 366 RaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 366 RAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred cCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 998 6788888753 33444444443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=331.35 Aligned_cols=331 Identities=23% Similarity=0.291 Sum_probs=242.0
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~ 92 (1396)
....|.|+|...++-++-| +++.++.||||||-++++.|. +++.+-++-..-||||||||++|+.|.+.+.++ |+
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3456999999999999887 899999999999999988543 333332333567899999999999998887764 67
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++.|++..|+.++. .+...+-..+||||+||++|.+.+++. -++++++.+||+|||+++... -|+.-|.+....
T Consensus 280 ~I~~~L~vGGL~lk----~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~l 354 (691)
T KOG0338|consen 280 DITVGLAVGGLDLK----AQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRL 354 (691)
T ss_pred cceeeeeecCccHH----HHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHh
Confidence 89999999997765 334445568999999999999999876 578999999999999999974 445555555432
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
-....+.+++|||... .+..|-++- ..+|....+ ++. .....
T Consensus 355 -----cpk~RQTmLFSATMte------------eVkdL~slS----------------L~kPvrifv--d~~---~~~a~ 396 (691)
T KOG0338|consen 355 -----CPKNRQTMLFSATMTE------------EVKDLASLS----------------LNKPVRIFV--DPN---KDTAP 396 (691)
T ss_pred -----ccccccceeehhhhHH------------HHHHHHHhh----------------cCCCeEEEe--CCc---cccch
Confidence 2345678999999743 233333211 112222111 110 00000
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
.+.+.+-.
T Consensus 397 ~LtQEFiR------------------------------------------------------------------------ 404 (691)
T KOG0338|consen 397 KLTQEFIR------------------------------------------------------------------------ 404 (691)
T ss_pred hhhHHHhe------------------------------------------------------------------------
Confidence 01111000
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
+.+ +....+-..|..++... -..++||||.++..|..+.-+|--
T Consensus 405 --------------IR~-----------------~re~dRea~l~~l~~rt---f~~~~ivFv~tKk~AHRl~IllGL-- 448 (691)
T KOG0338|consen 405 --------------IRP-----------------KREGDREAMLASLITRT---FQDRTIVFVRTKKQAHRLRILLGL-- 448 (691)
T ss_pred --------------ecc-----------------ccccccHHHHHHHHHHh---cccceEEEEehHHHHHHHHHHHHH--
Confidence 000 00011222333333331 256899999999999999888864
Q ss_pred CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccC
Q 000607 412 PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 412 p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R 491 (1396)
-|++++-+||+ +++.+|.+.+++|+++++++||||+|+++||||+.+..||||++|.+...|+||+||+.|
T Consensus 449 ---lgl~agElHGs------LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 449 ---LGLKAGELHGS------LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred ---hhchhhhhccc------ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 38999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CcEEEEEecCCcchH
Q 000607 492 QN--SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 492 ~g--s~~i~lv~~~~~~~~ 508 (1396)
+| |..|.|+.+++.+..
T Consensus 520 AGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 520 AGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred cccCcceEEEeccccHHHH
Confidence 88 688999987765543
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.97 Aligned_cols=354 Identities=21% Similarity=0.245 Sum_probs=242.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHH-------hcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYL-------LRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~-------~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..|.|.|..++.-.++. |+|.++.||||||..++..+...... ...-.++.+++|+||++|+.|..++-.++
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 34899999999988885 89999999999999888744332221 22235789999999999999988877776
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---CcHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQYACIM 165 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im 165 (1396)
. ++++..+.|+...+ ++--..-.+++|+|+||+.|.+.|.+.++-+++..++|+|||+++.+- ..+..|+
T Consensus 346 ~~~lg~r~vsvigg~s~E----Eq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL 421 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFE----EQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKIL 421 (673)
T ss_pred cccccceEEEEecccchh----hhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHH
Confidence 4 78888899985543 111234458999999999999999999999999999999999999863 2333333
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
... |..+..... +-.+.-..+..++.+ +.|.. .+. .....
T Consensus 422 ~~m---------------------Pssn~k~~t--de~~~~~~~~~~~~~~k~yrq----T~m----------ftatm-- 462 (673)
T KOG0333|consen 422 EQM---------------------PSSNAKPDT--DEKEGEERVRKNFSSSKKYRQ----TVM----------FTATM-- 462 (673)
T ss_pred HhC---------------------CccccCCCc--cchhhHHHHHhhcccccceeE----EEE----------EecCC--
Confidence 221 111111000 000011111111111 10000 000 00000
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
|..+.. +.. .|+... -....+..
T Consensus 463 -~p~ver-lar-----------------------------------------------------~ylr~p--v~vtig~~ 485 (673)
T KOG0333|consen 463 -PPAVER-LAR-----------------------------------------------------SYLRRP--VVVTIGSA 485 (673)
T ss_pred -ChHHHH-HHH-----------------------------------------------------HHhhCC--eEEEeccC
Confidence 000000 000 000000 00000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
.. ..+.+.+.+..-..+.|..+|+++|.++ ...++|||||++..++.|+
T Consensus 486 gk----------------------------~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 486 GK----------------------------PTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALA 534 (673)
T ss_pred CC----------------------------CccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHH
Confidence 00 0001111111223378899999999884 5789999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
+.|.+. ++++..+||+. ++.+|..+|..||+|..+|||||+|+++|||||++++||+||++.+..+|+|
T Consensus 535 k~LeK~-----g~~~~tlHg~k------~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtH 603 (673)
T KOG0333|consen 535 KILEKA-----GYKVTTLHGGK------SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTH 603 (673)
T ss_pred HHHhhc-----cceEEEeeCCc------cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHH
Confidence 999974 89999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 485 SRGRARMQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 485 r~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
|+||+||+| |.++.|++..|.+.+..+.+.+
T Consensus 604 RIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999 6899999988776666655544
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=351.72 Aligned_cols=331 Identities=18% Similarity=0.256 Sum_probs=230.8
Q ss_pred cccchHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-
Q 000607 19 LPFARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~- 93 (1396)
...+|+||.++++.+..+ ++|+++|||+|||++++.++..+ ++++|||||+..|+.||.++|.++++
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 466999999999998852 58999999999999999877644 35699999999999999999999864
Q ss_pred --CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--------cCccccceeEEEEeccccccCCCcHHH
Q 000607 94 --LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--------SYFKLNMIKVLILDECHHARGKHQYAC 163 (1396)
Q Consensus 94 --~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~~~ 163 (1396)
..++.++|+.... + .....|+|+|++++.+...+ ..+.-..|++||+|||||+... .|++
T Consensus 325 ~~~~I~~~tg~~k~~------~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~fr~ 394 (732)
T TIGR00603 325 DDSQICRFTSDAKER------F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MFRR 394 (732)
T ss_pred CCceEEEEecCcccc------c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HHHH
Confidence 5677777753211 1 12478999999998643222 1233357999999999999653 3444
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhh-cccccCCcceeEeccC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL-SNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l-~~~~~~~~~~~~~y~~ 242 (1396)
++..+ ..+++|||||||.+.++. +..|...++.++|...-.+.. ..|+..+.-..+....
T Consensus 395 il~~l----------~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~ 455 (732)
T TIGR00603 395 VLTIV----------QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPM 455 (732)
T ss_pred HHHhc----------CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecC
Confidence 44332 245789999999986642 334667778888776333333 2454443332222211
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh
Q 000607 243 DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE 322 (1396)
Q Consensus 243 ~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~ 322 (1396)
+.+.+. . ++.. .
T Consensus 456 ---t~~~~~----~----------yl~~-~-------------------------------------------------- 467 (732)
T TIGR00603 456 ---TPEFYR----E----------YLRE-N-------------------------------------------------- 467 (732)
T ss_pred ---CHHHHH----H----------HHHh-c--------------------------------------------------
Confidence 111100 0 0000 0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHH
Q 000607 323 QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIV 402 (1396)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~ 402 (1396)
.. .+. .+.. .-..|+..+..++..+. ..+.++||||++...+..
T Consensus 468 ----~~----~k~------~l~~---------------------~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~ 511 (732)
T TIGR00603 468 ----SR----KRM------LLYV---------------------MNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKE 511 (732)
T ss_pred ----ch----hhh------HHhh---------------------hChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHH
Confidence 00 000 0000 00456777767666542 467899999999988877
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-CeeEEEEecccccccCCCcccEEEEeCCCC-cHH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-LVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVC 480 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~ 480 (1396)
++..|. +.+++|. +++.+|.+++++|++| ++++||+|+|+.+|||+|++++||+++.|. |..
T Consensus 512 ~a~~L~----------~~~I~G~------ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~ 575 (732)
T TIGR00603 512 YAIKLG----------KPFIYGP------TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRR 575 (732)
T ss_pred HHHHcC----------CceEECC------CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHH
Confidence 776553 3468898 4999999999999975 789999999999999999999999999985 999
Q ss_pred HHHHhhhcccCCCC---------cEEEEEecCCcc
Q 000607 481 SFIQSRGRARMQNS---------DYLLMVKSGDST 506 (1396)
Q Consensus 481 ~yiQr~GRA~R~gs---------~~i~lv~~~~~~ 506 (1396)
+|+||.||+.|.+. .++.+++.+..+
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999999751 347788766543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=325.47 Aligned_cols=344 Identities=20% Similarity=0.209 Sum_probs=244.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR--------KPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~--------~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
...|.|+|+-+++.+..| +.+++++||||||.++++.|-..+...+ .+..++++||+||++||.|.+++.+
T Consensus 94 ~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~ 173 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR 173 (482)
T ss_pred ccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH
Confidence 455999999999999998 7999999999999999985543332211 0124789999999999999999999
Q ss_pred Hhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 90 MHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 90 ~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
++. ..++...+|+.+.. ........+++|+|+||+.|.+.+..+.+.++++.++|+|||+++.+.-.+.--++
T Consensus 174 k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 174 KFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred hhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 986 46777778874433 33455566899999999999999999999999999999999999997422211122
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..... .........+.+++|||-... +..+-..+-..-|+. +.
T Consensus 250 ~iv~~-~~~~~~~~~qt~mFSAtfp~~------------iq~l~~~fl~~~yi~-------------------la----- 292 (482)
T KOG0335|consen 250 KIVEQ-LGMPPKNNRQTLLFSATFPKE------------IQRLAADFLKDNYIF-------------------LA----- 292 (482)
T ss_pred HHhcc-cCCCCccceeEEEEeccCChh------------hhhhHHHHhhccceE-------------------EE-----
Confidence 11111 111122344577778875321 111110000000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.+...
T Consensus 293 --------------------------------------------------------------------------V~rvg- 297 (482)
T KOG0335|consen 293 --------------------------------------------------------------------------VGRVG- 297 (482)
T ss_pred --------------------------------------------------------------------------Eeeec-
Confidence 00000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhc------CCCCeeEEEEechHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYR------GVEDIRCIIFVERVITA 400 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~------~~~~~k~IIFv~~r~ta 400 (1396)
....++.+.+..-....|...|+++|..-. .....+++|||+++..|
T Consensus 298 ---------------------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~ 350 (482)
T KOG0335|consen 298 ---------------------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGA 350 (482)
T ss_pred ---------------------------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchh
Confidence 000111111222223567777777776421 11234899999999999
Q ss_pred HHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHH
Q 000607 401 IVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480 (1396)
Q Consensus 401 ~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~ 480 (1396)
..+..+|.. .++++..+||.. ++.+|.+.++.||+|.+.+||||+|+++|||||++.+||+||+|.+..
T Consensus 351 d~l~~~l~~-----~~~~~~sIhg~~------tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d 419 (482)
T KOG0335|consen 351 DELAAFLSS-----NGYPAKSIHGDR------TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID 419 (482)
T ss_pred hHHHHHHhc-----CCCCceeecchh------hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh
Confidence 999999996 489999999985 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCC--CcEEEEEecCCcchHHHHHHHHH
Q 000607 481 SFIQSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 481 ~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
+|+||+||+||.| +..+.|++..+....+.+.+.+.
T Consensus 420 ~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred hHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 9999999999988 68889998666555555544443
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=293.21 Aligned_cols=334 Identities=20% Similarity=0.245 Sum_probs=246.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
...|-..|+.++..+++| |+|+.+..|+|||.++.. ++..+ . + ....-.+++|.||++|+.|..+.+... .+
T Consensus 47 fekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~-d-~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 47 FEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSL-D-I-SVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred cCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeec-c-c-ccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 345888999999999998 899999999999987654 22221 1 0 113457999999999999999988865 47
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..+.|+.++. +..++.--+.+|+.+||++.+++++++.++-..+.+||+|||+.+.+..--.+|.. .|.
T Consensus 124 vq~hacigg~n~g----edikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd-iyr--- 195 (400)
T KOG0328|consen 124 VQCHACIGGKNLG----EDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYD-IYR--- 195 (400)
T ss_pred ceEEEEecCCccc----hhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHH-HHH---
Confidence 8899899987654 22233335889999999999999999999999999999999999987632223322 221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
..++..+++.+|||... ++.+. ..+|.+.|....+.-+ ..+.+-
T Consensus 196 --~lp~~~Qvv~~SATlp~------------eilem----------------t~kfmtdpvrilvkrd--eltlEg---- 239 (400)
T KOG0328|consen 196 --YLPPGAQVVLVSATLPH------------EILEM----------------TEKFMTDPVRILVKRD--ELTLEG---- 239 (400)
T ss_pred --hCCCCceEEEEeccCcH------------HHHHH----------------HHHhcCCceeEEEecC--CCchhh----
Confidence 22445689999999854 12111 2234444433222111 111110
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+++ ++-. .
T Consensus 240 -------------------------------IKq----------------------f~v~----------v--------- 247 (400)
T KOG0328|consen 240 -------------------------------IKQ----------------------FFVA----------V--------- 247 (400)
T ss_pred -------------------------------hhh----------------------heee----------e---------
Confidence 000 0000 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
....-|...|.++-... .-.+++|||+++..+++|.+-+++
T Consensus 248 --------------------------------e~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~---- 288 (400)
T KOG0328|consen 248 --------------------------------EKEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE---- 288 (400)
T ss_pred --------------------------------chhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh----
Confidence 00023444555543332 456899999999999999999997
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++.+.++||+ |.+++|.++++.||+|+.+|||+|+|-++|||+|.+++|||||+|.+...||||+||.||-|
T Consensus 289 -~nftVssmHGD------m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 289 -ANFTVSSMHGD------MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred -hCceeeeccCC------cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 47899999998 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCCcchHHHHHHHHHH
Q 000607 494 --SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 494 --s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
+.++-|+..+|......+++++..
T Consensus 362 RkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHHhh
Confidence 678889988877777777777654
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=344.42 Aligned_cols=321 Identities=17% Similarity=0.189 Sum_probs=219.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
...+|++|.++++.++++ |+++++|||+|||+++.+.+.. .+..++||+|+++|+.||.+.++. .++.+.
T Consensus 9 ~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~ 79 (470)
T TIGR00614 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------SDGITLVISPLISLMEDQVLQLKA-SGIPAT 79 (470)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEE
Confidence 345899999999999997 8999999999999998865431 245699999999999999999986 478888
Q ss_pred EEeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhH-hhcCc-cccceeEEEEeccccccCC-CcHHHHHHHHHHhhc
Q 000607 98 KYWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGL-RLSYF-KLNMIKVLILDECHHARGK-HQYACIMTEFYHRLL 173 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l-~~~~~-~l~~i~llI~DEaH~~~~~-~~~~~im~~f~~~~~ 173 (1396)
.+.|+...+.. ...+... ....+|+++||+.+.... ....+ ...++++||+||||++... |.++........ +
T Consensus 80 ~l~~~~~~~~~-~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~--l 156 (470)
T TIGR00614 80 FLNSSQSKEQQ-KNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS--L 156 (470)
T ss_pred EEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH--H
Confidence 78776432210 0112222 235899999999976422 11112 4678999999999998753 333333222110 0
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
... .+..++++||||+... ... .+...++-. .|......++...+..
T Consensus 157 ~~~-~~~~~~l~lTAT~~~~--------~~~---di~~~l~l~---------------~~~~~~~s~~r~nl~~------ 203 (470)
T TIGR00614 157 KQK-FPNVPIMALTATASPS--------VRE---DILRQLNLK---------------NPQIFCTSFDRPNLYY------ 203 (470)
T ss_pred HHH-cCCCceEEEecCCCHH--------HHH---HHHHHcCCC---------------CCcEEeCCCCCCCcEE------
Confidence 001 1234689999998542 111 122222110 0000000000000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 204 -------------------------------------------------------------------------------- 203 (470)
T TIGR00614 204 -------------------------------------------------------------------------------- 203 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
... . .....+..+.+.+.. ..++.++||||+++..++.++..|+.
T Consensus 204 --------------------~v~----~-----~~~~~~~~l~~~l~~--~~~~~~~IIF~~s~~~~e~la~~L~~---- 248 (470)
T TIGR00614 204 --------------------EVR----R-----KTPKILEDLLRFIRK--EFKGKSGIIYCPSRKKSEQVTASLQN---- 248 (470)
T ss_pred --------------------EEE----e-----CCccHHHHHHHHHHH--hcCCCceEEEECcHHHHHHHHHHHHh----
Confidence 000 0 001122334444432 12456789999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.|...|+||.|||||.|
T Consensus 249 -~g~~~~~~H~~------l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 249 -LGIAAGAYHAG------LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321 (470)
T ss_pred -cCCCeeEeeCC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC
Confidence 37899999987 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCCcc
Q 000607 494 --SDYLLMVKSGDST 506 (1396)
Q Consensus 494 --s~~i~lv~~~~~~ 506 (1396)
+.+++++...|..
T Consensus 322 ~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 322 LPSECHLFYAPADIN 336 (470)
T ss_pred CCceEEEEechhHHH
Confidence 5788888765443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=301.48 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=244.4
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH---HHHHhcCCeE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE---AIKMHTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~---~i~~~~~~~v 96 (1396)
.|-|.|.|.++.|+.| |+++.+-.|+|||-+++..+.+.. -.+...-..+++|||++|+-|..+ ++.+++++.|
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Leki--d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~v 184 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKI--DPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKV 184 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhhc--CccccceeEEEEeecchhhHHHHHHHHHHhcccCeEE
Confidence 4889999999999998 899999999999998876443221 112245678999999999987554 5567789999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
..-+|+.+.. +...+.-+..+++|+||++++|+...+.-.+++..++|+|||+.+... .+..++.....-
T Consensus 185 mvttGGT~lr----DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~----- 254 (459)
T KOG0326|consen 185 MVTTGGTSLR----DDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISF----- 254 (459)
T ss_pred EEecCCcccc----cceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHh-----
Confidence 9999986543 223344457899999999999999999999999999999999999975 677777766632
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADE 256 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~ 256 (1396)
..+.+++++.|||-.... . .-+.++...|-+.. +.++
T Consensus 255 lP~~rQillySATFP~tV------------k----------------~Fm~~~l~kPy~IN---------------LM~e 291 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTV------------K----------------GFMDRHLKKPYEIN---------------LMEE 291 (459)
T ss_pred CCccceeeEEecccchhH------------H----------------HHHHHhccCcceee---------------hhhh
Confidence 345678999999964311 0 01112222222110 1111
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
+. +.+ + .+++.
T Consensus 292 Lt---------l~G--------------v----------------------tQyYa------------------------ 302 (459)
T KOG0326|consen 292 LT---------LKG--------------V----------------------TQYYA------------------------ 302 (459)
T ss_pred hh---------hcc--------------h----------------------hhhee------------------------
Confidence 10 000 0 00110
Q ss_pred HHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
.-..+.|+..|-.++... .-.++||||++...++.|++-+.++ |
T Consensus 303 ----------------------------fV~e~qKvhCLntLfskL---qINQsIIFCNS~~rVELLAkKITel-----G 346 (459)
T KOG0326|consen 303 ----------------------------FVEERQKVHCLNTLFSKL---QINQSIIFCNSTNRVELLAKKITEL-----G 346 (459)
T ss_pred ----------------------------eechhhhhhhHHHHHHHh---cccceEEEeccchHhHHHHHHHHhc-----c
Confidence 001156777776666654 3568999999999999999999986 8
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--C
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--S 494 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s 494 (1396)
+.|-++|.. |-+..|+.++.+||+|.|+.||||+.+.+|||+|++|+||+||.|.+..+|.||+||+||-| +
T Consensus 347 yscyyiHak------M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 347 YSCYYIHAK------MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred chhhHHHHH------HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 999999987 89999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEEecCCcchHHHH
Q 000607 495 DYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 495 ~~i~lv~~~~~~~~~~i 511 (1396)
-.+.+++-+|.....++
T Consensus 421 lAInLityedrf~L~~I 437 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYRI 437 (459)
T ss_pred eEEEEEehhhhhhHHHH
Confidence 88899886654443333
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=349.75 Aligned_cols=337 Identities=20% Similarity=0.233 Sum_probs=224.5
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc--CCe
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--DLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~ 95 (1396)
...|+++|.++++.+++| |+|+.+|||||||+++.+.+...+. ..++.++|||+||++|+.||.+.++++. +++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~---~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA---DDPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh---hCCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 345999999999999998 8999999999999999986543322 2345689999999999999999999874 678
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCC--CcHHHHHHHHH
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGK--HQYACIMTEFY 169 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~~f~ 169 (1396)
+..+.|+...+ .-.....+++|+|+||+.|...+... ...++++++||+||||.+.+. .....++....
T Consensus 111 v~~~~Gdt~~~-----~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 111 PATYDGDTPTE-----ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEeCCCCHH-----HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 88888875432 11223346899999999987533211 122688999999999998652 11222333322
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
. .. ......|+++++|||..+.. ...+.+++..+..+ +. ...+........+.+... ..
T Consensus 186 r-i~-~~~g~~~q~i~~SATi~n~~------------~~~~~l~g~~~~~i-~~----~~~~~~~~~~~~~~p~~~--~~ 244 (742)
T TIGR03817 186 R-LC-ARYGASPVFVLASATTADPA------------AAASRLIGAPVVAV-TE----DGSPRGARTVALWEPPLT--EL 244 (742)
T ss_pred H-HH-HhcCCCCEEEEEecCCCCHH------------HHHHHHcCCCeEEE-CC----CCCCcCceEEEEecCCcc--cc
Confidence 1 11 11234589999999986521 11223333322211 00 001111111111111000 00
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
..
T Consensus 245 -------------------~~----------------------------------------------------------- 246 (742)
T TIGR03817 245 -------------------TG----------------------------------------------------------- 246 (742)
T ss_pred -------------------cc-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
... ..........+...+.+++. .+.++||||++|..++.++..|++
T Consensus 247 ------------------------~~~----~~~r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~ 293 (742)
T TIGR03817 247 ------------------------ENG----APVRRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARR 293 (742)
T ss_pred ------------------------ccc----cccccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 000 00000001234444444443 256999999999999999998876
Q ss_pred hcCCC---CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 410 LLPRH---CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 410 ~~p~~---~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
..... .+.++..+||+ |++++|.+++++|++|++++||||+++|+|||||++++||+||.|.+..+|+||.
T Consensus 294 ~l~~~~~~l~~~v~~~hgg------~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRi 367 (742)
T TIGR03817 294 LLGEVDPDLAERVAAYRAG------YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQA 367 (742)
T ss_pred HHHhhccccccchhheecC------CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhc
Confidence 42110 14566777776 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEe
Q 000607 487 GRARMQN--SDYLLMVK 501 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~ 501 (1396)
|||||.| |.+++++.
T Consensus 368 GRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 368 GRAGRRGQGALVVLVAR 384 (742)
T ss_pred cccCCCCCCcEEEEEeC
Confidence 9999988 45555544
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=309.49 Aligned_cols=337 Identities=21% Similarity=0.253 Sum_probs=250.3
Q ss_pred CCCCccccccCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCcccHH
Q 000607 6 MESDTTEEVSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP--SPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 6 ~~~~~~~~~~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~--~~k~vl~LvPt~~Lv~ 82 (1396)
++-.+..+.-....+.+.+.|...+..++.| ++|.++-||||||++++..+.+-+.+.+.. .|--+|||.|||+|+.
T Consensus 76 ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~ 155 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELAL 155 (758)
T ss_pred CchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHH
Confidence 3444555555566677999999999999998 899999999999999988544433433322 5667999999999999
Q ss_pred HHHHHHHH---hcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-cCccccceeEEEEeccccccCC
Q 000607 83 QQAEAIKM---HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 83 Q~~~~i~~---~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
|.++++.+ +.++..|++.|+.++. .....+.+.+|+||||++|+..++. ..++-+++.+||+|||+++.+-
T Consensus 156 QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 156 QTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred HHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH
Confidence 99999886 5689999999987654 2344556899999999999998875 4677889999999999999873
Q ss_pred CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeE
Q 000607 159 HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFK 238 (1396)
Q Consensus 159 ~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~ 238 (1396)
-+...|..... ..+...+.|++|||+..+ .+.+..|.- -+..++.+
T Consensus 231 -GFk~tL~~Ii~-----~lP~~RQTLLFSATqt~s---------vkdLaRLsL-~dP~~vsv------------------ 276 (758)
T KOG0343|consen 231 -GFKKTLNAIIE-----NLPKKRQTLLFSATQTKS---------VKDLARLSL-KDPVYVSV------------------ 276 (758)
T ss_pred -hHHHHHHHHHH-----hCChhheeeeeecccchh---------HHHHHHhhc-CCCcEEEE------------------
Confidence 23333332221 224456799999999652 122333210 11111111
Q ss_pred eccC-CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccc
Q 000607 239 FYKY-DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESD 317 (1396)
Q Consensus 239 ~y~~-~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~ 317 (1396)
.-.. ...|..+.
T Consensus 277 he~a~~atP~~L~------------------------------------------------------------------- 289 (758)
T KOG0343|consen 277 HENAVAATPSNLQ------------------------------------------------------------------- 289 (758)
T ss_pred eccccccChhhhh-------------------------------------------------------------------
Confidence 0000 01111100
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH
Q 000607 318 FFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV 397 (1396)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r 397 (1396)
+.+ -...+..|+..|...++.+ ...+.|||+.+-
T Consensus 290 ---------------------------Q~y----------------~~v~l~~Ki~~L~sFI~sh---lk~K~iVF~Ssc 323 (758)
T KOG0343|consen 290 ---------------------------QSY----------------VIVPLEDKIDMLWSFIKSH---LKKKSIVFLSSC 323 (758)
T ss_pred ---------------------------heE----------------EEEehhhHHHHHHHHHHhc---cccceEEEEehh
Confidence 000 0001156778888877774 578999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC
Q 000607 398 ITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477 (1396)
Q Consensus 398 ~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~ 477 (1396)
..+..++..+..+. .|++...+||. |+++.|.++..+|-...--||+||+|+++|+|+|++|.||.+|.|.
T Consensus 324 Kqvkf~~e~F~rlr---pg~~l~~L~G~------~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe 394 (758)
T KOG0343|consen 324 KQVKFLYEAFCRLR---PGIPLLALHGT------MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE 394 (758)
T ss_pred hHHHHHHHHHHhcC---CCCceeeeccc------hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch
Confidence 99999999999874 37899999998 7999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
+..+||||.||+.|.+ |..++|+..+
T Consensus 395 dv~tYIHRvGRtAR~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 395 DVDTYIHRVGRTARYKERGESLLMLTPS 422 (758)
T ss_pred hHHHHHHHhhhhhcccCCCceEEEEcch
Confidence 9999999999999976 6677777655
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=342.58 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=214.4
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKY 99 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 99 (1396)
.+|++|.++++.++.| |+|+.||||+|||+++.+.+.. .+..+|||+|+++|+.+|...+.. .++++..+
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~--------~~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L 530 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI--------CPGITLVISPLVSLIQDQIMNLLQ-ANIPAASL 530 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH--------cCCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4899999999999998 8999999999999999876532 134799999999999988777766 47888888
Q ss_pred eCCCCcccCCccchHHh---hccCcEEEecHHHHHH--hHhhcC---ccccceeEEEEeccccccCC-CcHHHHHHHHHH
Q 000607 100 WGDMGVDFWDGATWKEE---MSKHEVLVMTPQILLD--GLRLSY---FKLNMIKVLILDECHHARGK-HQYACIMTEFYH 170 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~---~~~~~ViV~T~q~L~~--~l~~~~---~~l~~i~llI~DEaH~~~~~-~~~~~im~~f~~ 170 (1396)
.|+...... ...+... ....+|+++||+.|.. .+.+.. .....+++|||||||++... |.++......-
T Consensus 531 ~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~- 608 (1195)
T PLN03137 531 SAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLG- 608 (1195)
T ss_pred ECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHH-
Confidence 887543210 1112221 1468999999999862 122111 12345899999999999853 44433222110
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.++.... ..++++||||.... +.+.+.......+..++. ....+|.. .|.... .
T Consensus 609 -~Lr~~fp-~vPilALTATAT~~--------V~eDI~~~L~l~~~~vfr--------~Sf~RpNL---~y~Vv~--k--- 662 (1195)
T PLN03137 609 -ILKQKFP-NIPVLALTATATAS--------VKEDVVQALGLVNCVVFR--------QSFNRPNL---WYSVVP--K--- 662 (1195)
T ss_pred -HHHHhCC-CCCeEEEEecCCHH--------HHHHHHHHcCCCCcEEee--------cccCccce---EEEEec--c---
Confidence 0011112 24578999998542 222222211111111110 00011110 000000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
T Consensus 663 -------------------------------------------------------------------------------- 662 (1195)
T PLN03137 663 -------------------------------------------------------------------------------- 662 (1195)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
....+..+.+++... ..+.++||||.+|..++.++..|..
T Consensus 663 -------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~- 702 (1195)
T PLN03137 663 -------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQE- 702 (1195)
T ss_pred -------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHH-
Confidence 000112222333221 2345789999999999999999986
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.|+++..+||+ |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||.||||
T Consensus 703 ----~Gika~~YHAG------Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAG 772 (1195)
T PLN03137 703 ----FGHKAAFYHGS------MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 772 (1195)
T ss_pred ----CCCCeeeeeCC------CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccC
Confidence 48899999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEec
Q 000607 491 MQN--SDYLLMVKS 502 (1396)
Q Consensus 491 R~g--s~~i~lv~~ 502 (1396)
|.| +.+++++..
T Consensus 773 RDG~~g~cILlys~ 786 (1195)
T PLN03137 773 RDGQRSSCVLYYSY 786 (1195)
T ss_pred CCCCCceEEEEecH
Confidence 988 578888753
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=343.34 Aligned_cols=313 Identities=16% Similarity=0.186 Sum_probs=216.2
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
..+|++|.++++.++++ |+++++|||+|||+++++.+.. ....++|++|+++|+.||.+.++.. ++.+..
T Consensus 24 ~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~--------~~g~tlVisPl~sL~~dqv~~l~~~-gi~~~~ 94 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV--------LDGLTLVVSPLISLMKDQVDQLLAN-GVAAAC 94 (607)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH--------cCCCEEEEecHHHHHHHHHHHHHHc-CCcEEE
Confidence 35899999999999997 8999999999999998865431 1346999999999999999999875 777777
Q ss_pred EeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHHHH---HHHHHhhc
Q 000607 99 YWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYACIM---TEFYHRLL 173 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im---~~f~~~~~ 173 (1396)
+.+....+.. ...+... ....+++++||+.+........+...++++||+||||++... |.++..+ ..+..
T Consensus 95 ~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~--- 170 (607)
T PRK11057 95 LNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ--- 170 (607)
T ss_pred EcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH---
Confidence 7665432211 0112111 235789999999987422222334467999999999998753 3333222 22221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
. .+..++++||||+.... ... +...++-. .|......++. +...+
T Consensus 171 --~-~p~~~~v~lTAT~~~~~--------~~d---i~~~l~l~---------------~~~~~~~~~~r---~nl~~--- 215 (607)
T PRK11057 171 --R-FPTLPFMALTATADDTT--------RQD---IVRLLGLN---------------DPLIQISSFDR---PNIRY--- 215 (607)
T ss_pred --h-CCCCcEEEEecCCChhH--------HHH---HHHHhCCC---------------CeEEEECCCCC---Cccee---
Confidence 1 12345899999985421 111 11222100 00000000000 00000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 216 -------------------------------------------------------------------------------- 215 (607)
T PRK11057 216 -------------------------------------------------------------------------------- 215 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
... . ...++..+...+.. ..+.++||||+++..++.++..|+.
T Consensus 216 --------------------~v~----~------~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~---- 258 (607)
T PRK11057 216 --------------------TLV----E------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS---- 258 (607)
T ss_pred --------------------eee----e------ccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh----
Confidence 000 0 01122233333333 3567899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||+||.|.|..+|+||.|||||.|
T Consensus 259 -~g~~v~~~Ha~------l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 259 -RGISAAAYHAG------LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred -CCCCEEEecCC------CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC
Confidence 47899999987 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++++++..|
T Consensus 332 ~~~~~ill~~~~d 344 (607)
T PRK11057 332 LPAEAMLFYDPAD 344 (607)
T ss_pred CCceEEEEeCHHH
Confidence 57888887554
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=331.42 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=218.0
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---Ce
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~ 95 (1396)
..||+||.+++..++++ ++|+++|||+|||+++..+++.+.. ....++||||||++|+.||.+.++++.. ..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh----cCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 57999999999999987 7999999999999998876654432 1233799999999999999999998763 33
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..+.|+... + .+.+|+|+|+|.+.+... ..++++++||+|||||+... .+..++..+-
T Consensus 189 ~~~i~~g~~~-------~----~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~~~~il~~~~------ 247 (501)
T PHA02558 189 MHKIYSGTAK-------D----TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-SLTSIITKLD------ 247 (501)
T ss_pred eeEEecCccc-------C----CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-hHHHHHHhhh------
Confidence 4344444221 1 257999999999976542 23578999999999999864 4565554431
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc-cccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN-FIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~-~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
+.++++||||||..+... ...+...++...+.++..+.+.. +...+....+... .+.....
T Consensus 248 ---~~~~~lGLTATp~~~~~~---------~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~---~~~~~~~--- 309 (501)
T PHA02558 248 ---NCKFKFGLTGSLRDGKAN---------ILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLR---YPDEDRV--- 309 (501)
T ss_pred ---ccceEEEEeccCCCcccc---------HHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEecc---CCHHHhh---
Confidence 346799999999653321 22234455655554422222221 2222211111111 0100000
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.+. . +.|.
T Consensus 310 -~~~-----------~-----------------------------~~~~------------------------------- 317 (501)
T PHA02558 310 -KLK-----------G-----------------------------EDYQ------------------------------- 317 (501)
T ss_pred -hhc-----------c-----------------------------cchH-------------------------------
Confidence 000 0 0000
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
+....+.. ...+...+.+++.... ..+.+++||++++.+++.|++.|++.
T Consensus 318 ---~~~~~l~~----------------------~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---- 367 (501)
T PHA02558 318 ---EEIKYITS----------------------HTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---- 367 (501)
T ss_pred ---HHHHHHhc----------------------cHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc----
Confidence 00000000 0122223333333322 24567899999999999999999973
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEe-cccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVAT-SILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaT-svleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+.++.++||. |+.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||.||++|.+
T Consensus 368 -g~~v~~i~G~------~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 368 -YDKVYYVSGE------VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred -CCCEEEEeCC------CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 7899999998 599999999999999999999998 89999999999999999999999999999999999976
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=301.88 Aligned_cols=326 Identities=23% Similarity=0.295 Sum_probs=235.4
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCC--cEEEEEeCCcccHHHHHHHHHHh--
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSP--FVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~--k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
....-.|.|...++..+++ +++|-++||||||+++++.+.++..+.. +.++ --++||+|||+|+.|..+++..|
T Consensus 25 GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 25 GFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred CCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 3445789999999999987 8999999999999999998776653222 2222 36899999999999999988765
Q ss_pred --cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 --TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 --~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
.++++.++.|+..++. +.-.-.-+++.|+|+||++|.+++++. .+++..++++|+|||+++.+- .+..-+..
T Consensus 105 ~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~ 180 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNT 180 (567)
T ss_pred hhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHH
Confidence 3789999999976652 111122237889999999999999985 455669999999999999874 23333333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC-CCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY-DEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~-~~~~ 246 (1396)
.+.. .++..|.=++|||-... ...|.. .....|....+.-.. ...|
T Consensus 181 ILs~-----LPKQRRTGLFSATq~~~------------v~dL~r----------------aGLRNpv~V~V~~k~~~~tP 227 (567)
T KOG0345|consen 181 ILSF-----LPKQRRTGLFSATQTQE------------VEDLAR----------------AGLRNPVRVSVKEKSKSATP 227 (567)
T ss_pred HHHh-----cccccccccccchhhHH------------HHHHHH----------------hhccCceeeeecccccccCc
Confidence 3221 12233444569986431 111111 011111111110000 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
+.+..
T Consensus 228 S~L~~--------------------------------------------------------------------------- 232 (567)
T KOG0345|consen 228 SSLAL--------------------------------------------------------------------------- 232 (567)
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 11000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.++ ...-..|+..|+++|.. ....+||||..+-..+++...+
T Consensus 233 ------------------~Y~-----------------v~~a~eK~~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~ 274 (567)
T KOG0345|consen 233 ------------------EYL-----------------VCEADEKLSQLVHLLNN---NKDKKCIVFFPTCASVEYFGKL 274 (567)
T ss_pred ------------------eee-----------------EecHHHHHHHHHHHHhc---cccccEEEEecCcchHHHHHHH
Confidence 000 00015788889999987 3678999999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
+..+. ....+..+||. |+++.|..++..|++..--+|+||+|+++|||||++++||.||+|.++.+|+||.
T Consensus 275 ~~~~l---~~~~i~~iHGK------~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~ 345 (567)
T KOG0345|consen 275 FSRLL---KKREIFSIHGK------MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRC 345 (567)
T ss_pred HHHHh---CCCcEEEecch------hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhc
Confidence 98762 46788899998 7999999999999998888999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEec
Q 000607 487 GRARMQN--SDYLLMVKS 502 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~ 502 (1396)
||++|.| |..++|+.+
T Consensus 346 GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 346 GRTARAGREGNAIVFLNP 363 (567)
T ss_pred chhhhccCccceEEEecc
Confidence 9999988 678888764
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=303.25 Aligned_cols=343 Identities=20% Similarity=0.190 Sum_probs=246.7
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHH-HH--HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSY-AY--LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l-~~--~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
....|.|.|.++.+.++.| ++|.++.||+|||+.+++. +-++ ++ .....++..+|++.||++|+.|..-+..++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 3455999999999999998 8999999999999999872 2121 11 1123367789999999999999988888764
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+++..+++|+.+.. .+....-.+.+|+++||+.|.++...+.+++..+.++|+|||+++.+-.-.-+|++-++.
T Consensus 319 yng~ksvc~ygggnR~----eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRN----EQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hcCcceEEEecCCCch----hHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 77777777764433 445566678999999999999999999999999999999999999975433444444331
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
..+-.+.+..|||=.. .+..|. +.+...+.. |..
T Consensus 395 ------iRPDRqtvmTSATWP~------------~VrrLa~sY~Kep~~v--------------------~vG------- 429 (629)
T KOG0336|consen 395 ------IRPDRQTVMTSATWPE------------GVRRLAQSYLKEPMIV--------------------YVG------- 429 (629)
T ss_pred ------cCCcceeeeecccCch------------HHHHHHHHhhhCceEE--------------------Eec-------
Confidence 1223356666777432 122231 111111110 100
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
.++...
T Consensus 430 -------------------------------------------------------------------------sLdL~a- 435 (629)
T KOG0336|consen 430 -------------------------------------------------------------------------SLDLVA- 435 (629)
T ss_pred -------------------------------------------------------------------------ccceee-
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
..+..+.+-....+.|......++..+ ..+.++||||.++..|+-|..-|.-
T Consensus 436 --------------------------~~sVkQ~i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l 487 (629)
T KOG0336|consen 436 --------------------------VKSVKQNIIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL 487 (629)
T ss_pred --------------------------eeeeeeeEEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhh
Confidence 000001111112266776665555554 5788999999999999988876652
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.|+....+||+. ++.+|+..++.|++|+++|||||+++++|||+|++.+|++||.|.|...|+||+||+
T Consensus 488 -----~gi~~q~lHG~r------~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 488 -----KGISSQSLHGNR------EQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred -----cccchhhccCCh------hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 689999999986 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHHH-HHHHHHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRL-ENYLASGNKMR 522 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i-~~~~~~e~~m~ 522 (1396)
||.| +..+.++...|....+.+ +-+.+.|+..-
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9998 678888888776655543 33334454443
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=345.65 Aligned_cols=446 Identities=15% Similarity=0.118 Sum_probs=246.8
Q ss_pred CcccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 18 TLPFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
..+.|.|||.+++..+++. ++|+++++|.|||..|++++..+.. .+..+++|||||+ .|+.||..++.+.+++
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~---~g~~~rvLIVvP~-sL~~QW~~El~~kF~l 224 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL---TGRAERVLILVPE-TLQHQWLVEMLRRFNL 224 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH---cCCCCcEEEEcCH-HHHHHHHHHHHHHhCC
Confidence 3566999999999888763 7999999999999999998876633 3445689999999 9999999999887888
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh-hcCccccceeEEEEeccccccCC----C-cHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR-LSYFKLNMIKVLILDECHHARGK----H-QYACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~-~~~~~l~~i~llI~DEaH~~~~~----~-~~~~im~~f 168 (1396)
.+..+.++.....+... ...+...+++|+|++.+...-. ...+.-..|+++|+|||||+... . .|. .+..+
T Consensus 225 ~~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~L 301 (956)
T PRK04914 225 RFSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ-VVEQL 301 (956)
T ss_pred CeEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH-HHHHH
Confidence 88777665322211110 0223367899999998875321 11222357999999999999832 1 122 22222
Q ss_pred HHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc----ccccCCcceeEeccCCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS----NFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~----~~~~~~~~~~~~y~~~~ 244 (1396)
....|++|+|||||..+... .+..+-+.|+...+. +...+. .|.+.........+...
T Consensus 302 --------a~~~~~~LLLTATP~q~~~~--------e~falL~lLdP~~f~--~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 302 --------AEVIPGVLLLTATPEQLGQE--------SHFARLRLLDPDRFH--DYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred --------hhccCCEEEEEcCcccCCcH--------HHHHhhhhhCCCcCC--CHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 13457899999999985432 233444666655543 122221 11000000000000000
Q ss_pred CchhhHHHHHHHHHHH-HHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHhhccccchhh
Q 000607 245 IPHALYTHLADELAMI-ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVW---LALKAAETISCYESDFFA 320 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~---~a~~~~~~~~~~~~~~~~ 320 (1396)
........+...+..- ..+....+.... .. .......-++.+.... ..|.. .......-+......
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~-~~-~~~~~~~~i~~L~d~h-----g~~rvm~RntR~~v~~fp~R~~~--- 433 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDS-EE-AQAARQELISELLDRH-----GTGRVLFRNTRAAVKGFPKRELH--- 433 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccc-cc-cHHHHHHHHHHHHhhc-----CcceEEEeccHHhhcCCCcCcee---
Confidence 1111111111110000 000000000000 00 0000000011110000 00000 000000000000000
Q ss_pred hhhcccchHHHHHHHHH-HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHH
Q 000607 321 WEQLDGFGETIIKKFGS-DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVIT 399 (1396)
Q Consensus 321 ~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~t 399 (1396)
.-.+.... .. ..... .........+.... ... ...........++|+..|.++|+.. .+.|+||||+++.+
T Consensus 434 ~~~l~~~~-~y-~~~~~~~~~~~~~~~l~pe~--~~~-~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t 505 (956)
T PRK04914 434 PIPLPLPE-QY-QTAIKVSLEARARDMLYPEQ--IYQ-EFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAAT 505 (956)
T ss_pred EeecCCCH-HH-HHHHHHhHHHHHHhhcCHHH--HHH-HHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHH
Confidence 00000000 00 00000 00000000000000 000 0000000112379999999999874 47799999999999
Q ss_pred HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC--CeeEEEEecccccccCCCcccEEEEeCCCC
Q 000607 400 AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG--LVNVIVATSILEEGLDVQSCNLVIMFDPSR 477 (1396)
Q Consensus 400 a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g--~~nvLVaTsvleeGiDIp~~~lVI~fD~p~ 477 (1396)
+..|.+.|++. .|+++..+||+ |++.+|.++++.|+++ .++|||||++++||+|++.|++||+||+||
T Consensus 506 ~~~L~~~L~~~----~Gi~~~~ihG~------~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~ 575 (956)
T PRK04914 506 ALQLEQALRER----EGIRAAVFHEG------MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF 575 (956)
T ss_pred HHHHHHHHhhc----cCeeEEEEECC------CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC
Confidence 99999999643 58999999997 7999999999999984 599999999999999999999999999999
Q ss_pred cHHHHHHhhhcccCCCC--cEEEEEecCCcchHHHHHHHHH
Q 000607 478 TVCSFIQSRGRARMQNS--DYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~gs--~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
|+..|+||+||++|.|+ .+.+.+..-.....+.+.+++.
T Consensus 576 nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 576 NPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred CHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 99999999999999985 2333332222234445555543
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=346.55 Aligned_cols=324 Identities=20% Similarity=0.272 Sum_probs=224.8
Q ss_pred cccchHHHHHHHHH-HhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc--CC
Q 000607 19 LPFARNYQLEALEN-ALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~-~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~ 94 (1396)
...|+|+|.++++. +..+ |+++++|||||||++|.++|..... ++++++||+|+++|+.|+++.++++. ++
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 44699999999998 4444 8999999999999999886543321 35679999999999999999999763 78
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC---cHHHHHHHHHHh
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH---QYACIMTEFYHR 171 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~ 171 (1396)
+++.++|+...+ ...+..++|+|+||+.+..+++++...+.+++++|+||||.+.+.. .+..++.....
T Consensus 96 ~v~~~tGd~~~~-------~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~- 167 (737)
T PRK02362 96 RVGISTGDYDSR-------DEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR- 167 (737)
T ss_pred EEEEEeCCcCcc-------ccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh-
Confidence 999999986443 1224578999999999999888766667899999999999987532 12233333221
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
....++++|||||+.+ ...+..++++..+.. .+.+.+....+.+... ... .
T Consensus 168 -----~~~~~qii~lSATl~n-------------~~~la~wl~~~~~~~-------~~rpv~l~~~v~~~~~-~~~---~ 218 (737)
T PRK02362 168 -----LNPDLQVVALSATIGN-------------ADELADWLDAELVDS-------EWRPIDLREGVFYGGA-IHF---D 218 (737)
T ss_pred -----cCCCCcEEEEcccCCC-------------HHHHHHHhCCCcccC-------CCCCCCCeeeEecCCe-ecc---c
Confidence 1234789999999865 335667776543321 1111111111111100 000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
..
T Consensus 219 --------------------------------------------------------------------------~~---- 220 (737)
T PRK02362 219 --------------------------------------------------------------------------DS---- 220 (737)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
. ..+......+++..+.+.+. .+.++||||++|..+..++..|....
T Consensus 221 ----------------------~------~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~ 267 (737)
T PRK02362 221 ----------------------Q------REVEVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASAL 267 (737)
T ss_pred ----------------------c------ccCCCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHh
Confidence 0 00000000223333444332 45789999999999998888776531
Q ss_pred CC-C-------------------C-----------CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccccc
Q 000607 412 PR-H-------------------C-----------TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEE 460 (1396)
Q Consensus 412 p~-~-------------------~-----------~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvlee 460 (1396)
.. . . ...+++.||+ |++.+|..+++.|++|.++|||||+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag------l~~~eR~~ve~~Fr~G~i~VLvaT~tla~ 341 (737)
T PRK02362 268 KKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG------LSREHRELVEDAFRDRLIKVISSTPTLAA 341 (737)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC------CCHHHHHHHHHHHHcCCCeEEEechhhhh
Confidence 10 0 0 0134555554 89999999999999999999999999999
Q ss_pred ccCCCcccEEEE----eC-----CCCcHHHHHHhhhcccCCC----CcEEEEEe
Q 000607 461 GLDVQSCNLVIM----FD-----PSRTVCSFIQSRGRARMQN----SDYLLMVK 501 (1396)
Q Consensus 461 GiDIp~~~lVI~----fD-----~p~s~~~yiQr~GRA~R~g----s~~i~lv~ 501 (1396)
|+|+|+.++||+ || .|.+..+|.||.|||||.| |.++++..
T Consensus 342 GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 342 GLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred hcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 999999999997 87 5889999999999999987 45666664
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=349.27 Aligned_cols=329 Identities=19% Similarity=0.195 Sum_probs=214.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhcC---CCCcEEEEEeCCcccHHHHHHHHHH----
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLRK---PSPFVAVFLVPKVVLVPQQAEAIKM---- 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~~---~~~k~vl~LvPt~~Lv~Q~~~~i~~---- 90 (1396)
..|+++|.++++.++++ |+|+++|||||||++|.+.+. .+...... .++.++++|+|+++|+.|+++.+..
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 34999999999999987 899999999999999998544 33221111 2456799999999999999876542
Q ss_pred ---h-------c-CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc--cccceeEEEEeccccccC
Q 000607 91 ---H-------T-DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF--KLNMIKVLILDECHHARG 157 (1396)
Q Consensus 91 ---~-------~-~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~--~l~~i~llI~DEaH~~~~ 157 (1396)
. . ++++...+|+...+ .........++|+|+||+.|..++....+ .+.++++||+||||++.+
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~----~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSY----EKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHH----HHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 1 1 56788899985433 11122234689999999999887765432 468899999999999985
Q ss_pred CCc---HHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCc
Q 000607 158 KHQ---YACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFST 234 (1396)
Q Consensus 158 ~~~---~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~ 234 (1396)
+.- +...+..+.. .....++++|||||+.+ ...+..++...... ..+++.
T Consensus 187 ~~RG~~l~~~L~rL~~-----l~~~~~q~IglSATl~~-------------~~~va~~L~~~~~~---------~~~r~~ 239 (876)
T PRK13767 187 NKRGVHLSLSLERLEE-----LAGGEFVRIGLSATIEP-------------LEEVAKFLVGYEDD---------GEPRDC 239 (876)
T ss_pred CccHHHHHHHHHHHHH-----hcCCCCeEEEEecccCC-------------HHHHHHHhcCcccc---------CCCCce
Confidence 421 1122222221 12345789999999854 22233333321100 000000
Q ss_pred ceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 000607 235 AKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCY 314 (1396)
Q Consensus 235 ~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~ 314 (1396)
. ++ .. ...... . + .+.. .
T Consensus 240 ~-iv--~~-~~~k~~-~-i-------------~v~~-p------------------------------------------ 257 (876)
T PRK13767 240 E-IV--DA-RFVKPF-D-I-------------KVIS-P------------------------------------------ 257 (876)
T ss_pred E-EE--cc-CCCccc-e-E-------------EEec-c------------------------------------------
Confidence 0 00 00 000000 0 0 0000 0
Q ss_pred ccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEe
Q 000607 315 ESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFV 394 (1396)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv 394 (1396)
..+. ..... .. ........|.+++. .+.++||||
T Consensus 258 ~~~l-----~~~~~--------------------------------~~----~~~~l~~~L~~~i~-----~~~~~LVF~ 291 (876)
T PRK13767 258 VDDL-----IHTPA--------------------------------EE----ISEALYETLHELIK-----EHRTTLIFT 291 (876)
T ss_pred Cccc-----ccccc--------------------------------ch----hHHHHHHHHHHHHh-----cCCCEEEEe
Confidence 0000 00000 00 00111222333332 346899999
Q ss_pred chHHHHHHHHHHHHhhcCC-CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEe
Q 000607 395 ERVITAIVLQSLLSELLPR-HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMF 473 (1396)
Q Consensus 395 ~~r~ta~~L~~~L~~~~p~-~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~f 473 (1396)
+++..|+.++..|++..+. +.+..+.+.||+ |++.+|..++++|++|++++||||+++++|||+|++++||+|
T Consensus 292 nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~------ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 292 NTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS------LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CCHHHHHHHHHHHHHhchhhccccceeeeeCC------CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 9999999999999874221 123567788886 799999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhhhcccCCC
Q 000607 474 DPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 474 D~p~s~~~yiQr~GRA~R~g 493 (1396)
|.|.+..+|+||.|||||.+
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999874
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=321.75 Aligned_cols=336 Identities=25% Similarity=0.328 Sum_probs=236.5
Q ss_pred CCCcccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 16 ADTLPFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 16 ~~~~~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
......+|+||.++++.+.+ + .+++++|||+|||++|+.+|..+ +..++||||+.+|+.||++.+.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHH
Confidence 44456699999999999998 5 59999999999999999888765 22399999999999999999999
Q ss_pred hcCCe--EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHH
Q 000607 91 HTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEF 168 (1396)
Q Consensus 91 ~~~~~--v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f 168 (1396)
+++.. ++.+.|+... +. ...|.|+|+|.+........+..+++++||||||||+..+ .|+.+...+
T Consensus 103 ~~~~~~~~g~~~~~~~~-------~~----~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~ 170 (442)
T COG1061 103 FLLLNDEIGIYGGGEKE-------LE----PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELL 170 (442)
T ss_pred hcCCccccceecCceec-------cC----CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhh
Confidence 88764 6666665211 11 1579999999998753222334457999999999999875 567676655
Q ss_pred HHhhccCCCCCCCe-EEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc-ccccCCcceeEeccCCCCc
Q 000607 169 YHRLLETGDSNLPR-IFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS-NFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~-ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~-~~~~~~~~~~~~y~~~~~~ 246 (1396)
.. ++ +|||||||...+.. .+..+...++..++...-.+.+. .+...+....+...... .
T Consensus 171 ~~----------~~~~LGLTATp~R~D~~--------~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~-~ 231 (442)
T COG1061 171 SA----------AYPRLGLTATPEREDGG--------RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTE-D 231 (442)
T ss_pred hc----------ccceeeeccCceeecCC--------chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccch-H
Confidence 42 34 99999999865533 26677788888888876666666 34433333222221110 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
+ ..............+.. .. . .+
T Consensus 232 -~-----~~~~~~~~~~~~~~~~~---------------------~~----~--~~------------------------ 254 (442)
T COG1061 232 -E-----EREYAKESARFRELLRA---------------------RG----T--LR------------------------ 254 (442)
T ss_pred -H-----HHHhhhhhhhhhhhhhh---------------------hh----h--hh------------------------
Confidence 0 00000000000000000 00 0 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.......+. .....|+..+..++..+. .+.+++||+..+.++..++..
T Consensus 255 ---------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~ 302 (442)
T COG1061 255 ---------AENEARRIA---------------------IASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKL 302 (442)
T ss_pred ---------HHHHHHHHh---------------------hccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHH
Confidence 000000000 001455566666666542 678999999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
+.. .++ +..++|.+ +..+|.+++++||.|++++||++.|+.||+|+|+++++|...+..|...|+||.
T Consensus 303 ~~~-----~~~-~~~it~~t------~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~l 370 (442)
T COG1061 303 FLA-----PGI-VEAITGET------PKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRL 370 (442)
T ss_pred hcC-----CCc-eEEEECCC------CHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHh
Confidence 885 345 88898986 899999999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 000607 487 GRARM 491 (1396)
Q Consensus 487 GRA~R 491 (1396)
||.-|
T Consensus 371 GR~LR 375 (442)
T COG1061 371 GRGLR 375 (442)
T ss_pred hhhcc
Confidence 99988
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=303.09 Aligned_cols=331 Identities=18% Similarity=0.210 Sum_probs=238.3
Q ss_pred ccCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR--KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 14 ~~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~--~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..........+.|...+..++.+ |+++.+-||+|||+++++.+-++....+ ..++-.++|+||||+|+.|.+.+.++
T Consensus 97 i~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~ 176 (543)
T KOG0342|consen 97 IKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKE 176 (543)
T ss_pred HHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHH
Confidence 33444556899999999999997 8999999999999999985544433222 22566799999999999999998886
Q ss_pred hc----CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHH
Q 000607 91 HT----DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 91 ~~----~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
.+ ++.++.+.|+.+.. ..-++....++|+|+||++|++.+++. .+-...+.++|+|||+|+.+- -+..-|
T Consensus 177 Ll~~h~~~~v~~viGG~~~~----~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di 251 (543)
T KOG0342|consen 177 LLKYHESITVGIVIGGNNFS----VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDV 251 (543)
T ss_pred HHhhCCCcceEEEeCCccch----HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHH
Confidence 53 67899999985443 233455558999999999999999864 233456689999999999964 233333
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEI 245 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~ 245 (1396)
..... ......+.+++|||-.. .+.+|+..-- .+....+.......
T Consensus 252 ~~Ii~-----~lpk~rqt~LFSAT~~~------------kV~~l~~~~L-----------------~~d~~~v~~~d~~~ 297 (543)
T KOG0342|consen 252 EQIIK-----ILPKQRQTLLFSATQPS------------KVKDLARGAL-----------------KRDPVFVNVDDGGE 297 (543)
T ss_pred HHHHH-----hccccceeeEeeCCCcH------------HHHHHHHHhh-----------------cCCceEeecCCCCC
Confidence 33322 12355678999999743 2333332110 00000111110000
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcc
Q 000607 246 PHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLD 325 (1396)
Q Consensus 246 ~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (1396)
.++
T Consensus 298 -~~T---------------------------------------------------------------------------- 300 (543)
T KOG0342|consen 298 -RET---------------------------------------------------------------------------- 300 (543)
T ss_pred -cch----------------------------------------------------------------------------
Confidence 000
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 326 GFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 326 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.+.+.+.+ .+ .....++..|..+|++.. ...++|||+.+...+...+.
T Consensus 301 --------------he~l~Qgy------vv----------~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~ 348 (543)
T KOG0342|consen 301 --------------HERLEQGY------VV----------APSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAE 348 (543)
T ss_pred --------------hhcccceE------Ee----------ccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHH
Confidence 00000000 00 001344677888888853 44899999999999999999
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHh
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQS 485 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr 485 (1396)
+|+.+ .+.|..+||. +++..|..+...|++.+.-|||||+|+++|+|+|+++.||.||+|.++.+||||
T Consensus 349 lL~~~-----dlpv~eiHgk------~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHR 417 (543)
T KOG0342|consen 349 LLNYI-----DLPVLEIHGK------QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHR 417 (543)
T ss_pred HHhhc-----CCchhhhhcC------CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHH
Confidence 99964 7889999998 589999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCC--CcEEEEEecC
Q 000607 486 RGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 486 ~GRA~R~g--s~~i~lv~~~ 503 (1396)
.||++|.| |..++++...
T Consensus 418 vGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 418 VGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred hccccccCCCceEEEEeChh
Confidence 99999987 5677776644
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=337.98 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=220.8
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
..+|++|.++++.++++ |++++||||+|||+++.+.+. . .+..++|++|+++|+.||.+.++.. ++.+..
T Consensus 12 ~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal--~------~~g~~lVisPl~sL~~dq~~~l~~~-gi~~~~ 82 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPAL--L------LKGLTVVISPLISLMKDQVDQLRAA-GVAAAY 82 (591)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHH--H------cCCcEEEEcCCHHHHHHHHHHHHHc-CCcEEE
Confidence 35899999999999997 899999999999999976442 1 1346899999999999999999884 788888
Q ss_pred EeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHHHH---HHHHHhhc
Q 000607 99 YWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYACIM---TEFYHRLL 173 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im---~~f~~~~~ 173 (1396)
+.|+...+... ..+... ....+|+++||+.+.+......+...++++|||||||++... |.++..+ ..+..
T Consensus 83 ~~s~~~~~~~~-~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~--- 158 (591)
T TIGR01389 83 LNSTLSAKEQQ-DIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE--- 158 (591)
T ss_pred EeCCCCHHHHH-HHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH---
Confidence 88875433111 112222 246899999999987544444556678999999999998753 3332221 12221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....| ++++|||+... ... .+...++-. .+......++. +...
T Consensus 159 --~~~~~~-vi~lTAT~~~~--------~~~---~i~~~l~~~---------------~~~~~~~~~~r---~nl~---- 202 (591)
T TIGR01389 159 --RFPQVP-RIALTATADAE--------TRQ---DIRELLRLA---------------DANEFITSFDR---PNLR---- 202 (591)
T ss_pred --hCCCCC-EEEEEeCCCHH--------HHH---HHHHHcCCC---------------CCCeEecCCCC---CCcE----
Confidence 122345 99999998542 111 222222110 00000000000 0000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 203 -------------------------------------------------------------------------------- 202 (591)
T TIGR01389 203 -------------------------------------------------------------------------------- 202 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
+... ....+...+.+.|... .+.++||||+++..++.++..|..
T Consensus 203 -------------------~~v~----------~~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~---- 246 (591)
T TIGR01389 203 -------------------FSVV----------KKNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLES---- 246 (591)
T ss_pred -------------------EEEE----------eCCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh----
Confidence 0000 0012334455555442 367899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |+.++|..++++|++|+++|||||+++++|||+|+++.||+||+|.|..+|+|+.|||||.|
T Consensus 247 -~g~~~~~~H~~------l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 247 -QGISALAYHAG------LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG 319 (591)
T ss_pred -CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCC
Confidence 47889999987 79999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++++++.+|
T Consensus 320 ~~~~~il~~~~~d 332 (591)
T TIGR01389 320 LPAEAILLYSPAD 332 (591)
T ss_pred CCceEEEecCHHH
Confidence 46777766543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=299.34 Aligned_cols=367 Identities=19% Similarity=0.235 Sum_probs=224.9
Q ss_pred CCCcccchHHHHHHHHHHhc----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 16 ADTLPFARNYQLEALENALK----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 16 ~~~~~~~r~yQ~e~~~~~l~----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+......-|.|...+..++. ++++|.+|||||||+++++.|-.++.. |.-+.-|++||+||+.|+.|.+
T Consensus 154 k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 154 KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVY 232 (620)
T ss_pred HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHH
Confidence 34444567888888887753 479999999999999999977665331 1125678999999999999999
Q ss_pred HHHHHhc---CCeEEEEeCCCCcccCCccchHHhh-c----cCcEEEecHHHHHHhHhh-cCccccceeEEEEecccccc
Q 000607 86 EAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM-S----KHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 86 ~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~----~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~ 156 (1396)
++|..+. |+.|+...|...... + -.... . ..||+|+||++|.+.+.+ ..+.++++.++|+|||+++.
T Consensus 233 ~~f~~~~~~tgL~V~~~sgq~sl~~---E-~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 233 DTFKRLNSGTGLAVCSLSGQNSLED---E-ARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHhccCCceEEEecccccchHH---H-HHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 9999875 788998888754321 1 11111 1 359999999999999984 56889999999999999998
Q ss_pred CCCcHHHHHHHHHHhhccCC--CCCCCeEEEEec--cCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccC
Q 000607 157 GKHQYACIMTEFYHRLLETG--DSNLPRIFGMTA--SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPF 232 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~--~~~~p~ilgLTA--Tp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~ 232 (1396)
+. .|...+....... +.. ....-.||-+.- +|.. +..+...+ ....
T Consensus 309 ~q-sfQ~Wl~~v~~~~-~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~---------------~~~~ 358 (620)
T KOG0350|consen 309 DQ-SFQEWLDTVMSLC-KTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKL---------------GKLY 358 (620)
T ss_pred HH-HHHHHHHHHHHHh-CCchhhcChhhhhhhcccCCchh-------------hHHHHhhc---------------CCcC
Confidence 63 4443332222110 000 000111222211 1111 11111111 0000
Q ss_pred CcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000607 233 STAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETIS 312 (1396)
Q Consensus 233 ~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~ 312 (1396)
|......+... + ......+.++. ..... ...
T Consensus 359 ~~l~kL~~sat-----L-sqdP~Kl~~l~----l~~Pr---------------------------------------l~~ 389 (620)
T KOG0350|consen 359 PPLWKLVFSAT-----L-SQDPSKLKDLT----LHIPR---------------------------------------LFH 389 (620)
T ss_pred chhHhhhcchh-----h-hcChHHHhhhh----cCCCc---------------------------------------eEE
Confidence 11000000000 0 00000000000 00000 000
Q ss_pred ccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEE
Q 000607 313 CYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCII 392 (1396)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~II 392 (1396)
-... +.+. +.+...+....-.....-|...+..++..+ +..++|+
T Consensus 390 v~~~---~~~r-----------------------------yslp~~l~~~~vv~~~~~kpl~~~~lI~~~---k~~r~lc 434 (620)
T KOG0350|consen 390 VSKP---LIGR-----------------------------YSLPSSLSHRLVVTEPKFKPLAVYALITSN---KLNRTLC 434 (620)
T ss_pred eecc---ccee-----------------------------eecChhhhhceeecccccchHhHHHHHHHh---hcceEEE
Confidence 0000 0000 000000000000000122444556666553 6789999
Q ss_pred EechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE
Q 000607 393 FVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 393 Fv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
|+++..++..|.+.|+-.... ..+++..+.|. ++.+.|.+.+++|+.|++|+||||+++++|||+-+++.||+
T Consensus 435 f~~S~~sa~Rl~~~L~v~~~~-~~~~~s~~t~~------l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 435 FVNSVSSANRLAHVLKVEFCS-DNFKVSEFTGQ------LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred EecchHHHHHHHHHHHHHhcc-ccchhhhhhhh------hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 999999999999999933222 35666777776 58999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchH
Q 000607 473 FDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~ 508 (1396)
||+|.+..+|+||.||++|+| |.++.++...+...+
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 999999999999999999998 577777775544433
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-31 Score=334.39 Aligned_cols=322 Identities=18% Similarity=0.235 Sum_probs=215.6
Q ss_pred CcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.|+++|.++++.+.++ |.++.+|||||||++|++.+..... .+.+++||+||++|+.|+++.+++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHHHHHHHHHHHHH
Confidence 3456999999999999874 7999999999999999987654332 467899999999999999999998
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
.+ ++++..++|+...... ...+..... .++|+|+||+.+.+ .+.+.+++++|+||+|++... . .
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r-~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-q-----r 400 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKER-REILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-Q-----R 400 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHH-HHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-H-----H
Confidence 65 6899999998654321 122333333 59999999987743 345789999999999997532 1 1
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..+. .....|++++|||||.... + .+...-+-.+... .++.. ...|....+ ..
T Consensus 401 ~~l~-----~~~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i---~~~p~-~r~~i~~~~--~~---- 453 (681)
T PRK10917 401 LALR-----EKGENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVI---DELPP-GRKPITTVV--IP---- 453 (681)
T ss_pred HHHH-----hcCCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEE---ecCCC-CCCCcEEEE--eC----
Confidence 1111 1123588999999996421 0 0100000000000 00000 000000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
T Consensus 454 -------------------------------------------------------------------------------- 453 (681)
T PRK10917 454 -------------------------------------------------------------------------------- 453 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH--------H
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV--------I 398 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r--------~ 398 (1396)
..+...+.+.+.+.. .++.+++|||+.+ .
T Consensus 454 ------------------------------------------~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 454 ------------------------------------------DSRRDEVYERIREEI-AKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred ------------------------------------------cccHHHHHHHHHHHH-HcCCcEEEEEcccccccchhHH
Confidence 000011112221110 2467899999854 3
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR- 477 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~- 477 (1396)
.+..+++.|.+.. .++++..+||. |++.+|.+++++|++|+++|||||+++|+|||+|++++||++|.|.
T Consensus 491 ~~~~~~~~L~~~~---~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 491 SAEETYEELQEAF---PELRVGLLHGR------MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred HHHHHHHHHHHHC---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 4566677777542 34789999998 7999999999999999999999999999999999999999999997
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEEecC-CcchHHHHHHHH
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMVKSG-DSTTQSRLENYL 515 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv~~~-~~~~~~~i~~~~ 515 (1396)
...++.|++||+||.| |.++++.... +....++++.+.
T Consensus 562 gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~ 602 (681)
T PRK10917 562 GLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMR 602 (681)
T ss_pred CHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHH
Confidence 5788999999999987 5666666422 223444444443
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=300.23 Aligned_cols=355 Identities=18% Similarity=0.219 Sum_probs=230.0
Q ss_pred CcccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHH-HHH------Hh----cCCCCcEEEEEeCCcccHHHH
Q 000607 18 TLPFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRS-YAY------LL----RKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~-l~~------~~----~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
.+..|.++|.-.++.|..+ +++-+++||||||+++...|.+ +.+ .+ ........||++|||+|+.|.
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 3455889999999999997 8999999999999999876554 111 11 112334699999999999998
Q ss_pred HHHHHH---hcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc---cccceeEEEEeccccccCC
Q 000607 85 AEAIKM---HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF---KLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 85 ~~~i~~---~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~---~l~~i~llI~DEaH~~~~~ 158 (1396)
.+.|.. .+++++..++|++.+. .+-+-.-...+|||+||++|+.++..+.. ++.++++||+||++++...
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavq----KQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQ----KQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHH----HHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 887765 5689999999997654 22222333799999999999999986643 5688999999999999976
Q ss_pred CcHHHH---HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcc
Q 000607 159 HQYACI---MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTA 235 (1396)
Q Consensus 159 ~~~~~i---m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~ 235 (1396)
.-|... ++.... .......+.|.+|||..-..... +..... ..
T Consensus 356 ghF~Els~lL~~L~e----~~~~~qrQTlVFSATlt~~~~~~--------~~~~~k----------------~~------ 401 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNE----EQKNRQRQTLVFSATLTLVLQQP--------LSSSRK----------------KK------ 401 (731)
T ss_pred ccHHHHHHHHHHhhh----hhcccccceEEEEEEeehhhcCh--------hHHhhh----------------cc------
Confidence 444433 332221 12233456888999974422111 000000 00
Q ss_pred eeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 000607 236 KFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYE 315 (1396)
Q Consensus 236 ~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~ 315 (1396)
. ........++.+.+ .+|...-
T Consensus 402 --------~----k~~~~~~kiq~Lmk-----------------------------------~ig~~~k----------- 423 (731)
T KOG0347|consen 402 --------D----KEDELNAKIQHLMK-----------------------------------KIGFRGK----------- 423 (731)
T ss_pred --------c----hhhhhhHHHHHHHH-----------------------------------HhCccCC-----------
Confidence 0 00001111111100 0000000
Q ss_pred cchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEec
Q 000607 316 SDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~ 395 (1396)
.. -+|...+.... .........+.+ ..|--.|.-+|.. -..++|||||
T Consensus 424 pk-----iiD~t~q~~ta------~~l~Es~I~C~~-----------------~eKD~ylyYfl~r----yPGrTlVF~N 471 (731)
T KOG0347|consen 424 PK-----IIDLTPQSATA------STLTESLIECPP-----------------LEKDLYLYYFLTR----YPGRTLVFCN 471 (731)
T ss_pred Ce-----eEecCcchhHH------HHHHHHhhcCCc-----------------cccceeEEEEEee----cCCceEEEec
Confidence 00 00100000000 000000000000 0000001111222 3579999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCC
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~ 475 (1396)
++..+..|+-+|+.+ ++.+..+|.. |.+++|.+.+++|++...-|||||+|+++|+|||.+.+||||-.
T Consensus 472 sId~vKRLt~~L~~L-----~i~p~~LHA~------M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNL-----DIPPLPLHAS------MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred hHHHHHHHHHHHhhc-----CCCCchhhHH------HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec
Confidence 999999999999975 6778888876 89999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhhcccCCCC--cEEEEEecCCcchHHHH
Q 000607 476 SRTVCSFIQSRGRARMQNS--DYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 476 p~s~~~yiQr~GRA~R~gs--~~i~lv~~~~~~~~~~i 511 (1396)
|.+...|+||.||+.|+++ .-++|+..++...+.++
T Consensus 541 PrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred CCccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 9999999999999999884 55666665544444333
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=335.15 Aligned_cols=306 Identities=20% Similarity=0.230 Sum_probs=211.3
Q ss_pred cccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 19 LPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.+.|+++|.++++.++++ |.++++|||+|||.+|+.++..... .+++++|||||++|+.|+++.+++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-----~g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-----DGKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-----hCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 346899999999999873 7999999999999999876544322 3578999999999999999999976
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
+ ++++..++|..+.... ...+..... ..+|||+||..+ ...+.+.+++++|+||+|++...+ +.
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv~~------~~ 591 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGVKQ------KE 591 (926)
T ss_pred hccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccchhH------HH
Confidence 4 5788888887543211 111222222 589999999644 234668899999999999975321 11
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHH-HHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHD-LETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~-Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.+.. ....+++++|||||.... +.. +....+..+... .|..+. .+.
T Consensus 592 ~L~~-----~~~~~~vL~~SATpiprt-----------l~~~l~g~~d~s~I~~-----------~p~~R~------~V~ 638 (926)
T TIGR00580 592 KLKE-----LRTSVDVLTLSATPIPRT-----------LHMSMSGIRDLSIIAT-----------PPEDRL------PVR 638 (926)
T ss_pred HHHh-----cCCCCCEEEEecCCCHHH-----------HHHHHhcCCCcEEEec-----------CCCCcc------ceE
Confidence 1111 123578999999996521 100 000001001000 000000 000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..+..
T Consensus 639 t~v~~--------------------------------------------------------------------------- 643 (926)
T TIGR00580 639 TFVME--------------------------------------------------------------------------- 643 (926)
T ss_pred EEEEe---------------------------------------------------------------------------
Confidence 00000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHH-HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEK-IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K-v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
..... ...+...+ ..+.+++|||+++.++..+++
T Consensus 644 ----------------------------------------~~~~~i~~~i~~el-----~~g~qv~if~n~i~~~e~l~~ 678 (926)
T TIGR00580 644 ----------------------------------------YDPELVREAIRREL-----LRGGQVFYVHNRIESIEKLAT 678 (926)
T ss_pred ----------------------------------------cCHHHHHHHHHHHH-----HcCCeEEEEECCcHHHHHHHH
Confidence 00000 00011111 135689999999999999999
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-cHHHHHH
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVCSFIQ 484 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~~yiQ 484 (1396)
.|++.. .++++..+||. |++++|.+++++|++|+++|||||+++|+|||+|++++||++|.|. ...+|+|
T Consensus 679 ~L~~~~---p~~~v~~lHG~------m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Q 749 (926)
T TIGR00580 679 QLRELV---PEARIAIAHGQ------MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQ 749 (926)
T ss_pred HHHHhC---CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHH
Confidence 999753 35789999998 7999999999999999999999999999999999999999999875 5779999
Q ss_pred hhhcccCCC--CcEEEEEecC
Q 000607 485 SRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 485 r~GRA~R~g--s~~i~lv~~~ 503 (1396)
|+||+||.| +.++++++..
T Consensus 750 r~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 750 LRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HhcCCCCCCCCeEEEEEECCc
Confidence 999999987 4666676543
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=329.49 Aligned_cols=318 Identities=19% Similarity=0.228 Sum_probs=216.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh--cCCeE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH--TDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~--~~~~v 96 (1396)
+.++++|.++++.+.++ |+++++|||||||++|.++|..... .++++++++|+++|+.|+++.++++ .+.++
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-----~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-----AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-----hCCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 45899999999999886 8999999999999999886654322 2467999999999999999999865 37788
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC---cHHHHHHHHHHhhc
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH---QYACIMTEFYHRLL 173 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~~~ 173 (1396)
+..+|+...+ ...+..++|+|+||+.+..++.+....+.+++++|+||||++.+.. .+..++....
T Consensus 96 ~~~~G~~~~~-------~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~---- 164 (674)
T PRK01172 96 KISIGDYDDP-------PDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR---- 164 (674)
T ss_pred EEEeCCCCCC-------hhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH----
Confidence 8888875432 2234578999999999998888766668899999999999987532 2223332221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
......+++|||||+.+ ..++..++++..+.. .+.+.|....+.+......
T Consensus 165 --~~~~~~riI~lSATl~n-------------~~~la~wl~~~~~~~-------~~r~vpl~~~i~~~~~~~~------- 215 (674)
T PRK01172 165 --YVNPDARILALSATVSN-------------ANELAQWLNASLIKS-------NFRPVPLKLGILYRKRLIL------- 215 (674)
T ss_pred --hcCcCCcEEEEeCccCC-------------HHHHHHHhCCCccCC-------CCCCCCeEEEEEecCeeee-------
Confidence 11235789999999854 234566676543211 1112221111111100000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+...
T Consensus 216 -----------------------------------------------------------------------~~~~----- 219 (674)
T PRK01172 216 -----------------------------------------------------------------------DGYE----- 219 (674)
T ss_pred -----------------------------------------------------------------------cccc-----
Confidence 0000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
. . ... +..++.+. ..++.++||||+++..+..++..|.+..+.
T Consensus 220 --------------------~------~-------~~~---~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~ 262 (674)
T PRK01172 220 --------------------R------S-------QVD---INSLIKET-VNDGGQVLVFVSSRKNAEDYAEMLIQHFPE 262 (674)
T ss_pred --------------------c------c-------ccc---HHHHHHHH-HhCCCcEEEEeccHHHHHHHHHHHHHhhhh
Confidence 0 0 000 11111111 124568999999999999999888764321
Q ss_pred CCC--------------------ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE-
Q 000607 414 HCT--------------------WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM- 472 (1396)
Q Consensus 414 ~~~--------------------~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~- 472 (1396)
... ..+.+.||. |++.+|..+.+.|++|.++|||||+++++|+|+|+..+||.
T Consensus 263 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag------l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~ 336 (674)
T PRK01172 263 FNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG------LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD 336 (674)
T ss_pred cccccccccccccccHHHHHHHhcCEEEecCC------CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcC
Confidence 011 124455554 79999999999999999999999999999999999765552
Q ss_pred ---eC----CCCcHHHHHHhhhcccCCC----CcEEEEEe
Q 000607 473 ---FD----PSRTVCSFIQSRGRARMQN----SDYLLMVK 501 (1396)
Q Consensus 473 ---fD----~p~s~~~yiQr~GRA~R~g----s~~i~lv~ 501 (1396)
|+ .|.+..+|.||+|||||.| +..++++.
T Consensus 337 ~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 337 ITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred ceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 22 2568889999999999987 34556654
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=324.80 Aligned_cols=310 Identities=20% Similarity=0.270 Sum_probs=209.3
Q ss_pred CcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.|+++|.++++.++++ |.++.+|||||||.+|++.+..... .+.+++|++||++|+.|+++.+++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----~g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----AGYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEECCHHHHHHHHHHHHHH
Confidence 3456999999999998874 5899999999999999876654432 466899999999999999999998
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
.+ ++++..++|+.....+ ...|.... .+.+|+|+||..+.+ .+.+.+++++|+||+|++... ....+..
T Consensus 307 l~~~~gi~v~lltg~~~~~~r-~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr~~l~~ 379 (630)
T TIGR00643 307 LLAPLGIEVALLTGSLKGKRR-KELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QRKKLRE 379 (630)
T ss_pred HhcccCcEEEEEecCCCHHHH-HHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HHHHHHH
Confidence 75 6899999998654321 12233322 357999999997754 345788999999999997532 1111111
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.. .....|++++|||||.... +...+..... ...+. ..+.....+..+.. .
T Consensus 380 ~~-------~~~~~~~~l~~SATp~prt--------------l~l~~~~~l~----~~~i~-~~p~~r~~i~~~~~---~ 430 (630)
T TIGR00643 380 KG-------QGGFTPHVLVMSATPIPRT--------------LALTVYGDLD----TSIID-ELPPGRKPITTVLI---K 430 (630)
T ss_pred hc-------ccCCCCCEEEEeCCCCcHH--------------HHHHhcCCcc----eeeec-cCCCCCCceEEEEe---C
Confidence 10 0112588999999996521 0000100000 00000 00000000000000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.
T Consensus 431 ~------------------------------------------------------------------------------- 431 (630)
T TIGR00643 431 H------------------------------------------------------------------------------- 431 (630)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH--------H
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV--------I 398 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r--------~ 398 (1396)
..+ ..+.+.+.+. -.++.+++|||+.+ .
T Consensus 432 ------------------------------------------~~~-~~~~~~i~~~-l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 432 ------------------------------------------DEK-DIVYEFIEEE-IAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred ------------------------------------------chH-HHHHHHHHHH-HHhCCcEEEEEccccccccchHH
Confidence 000 1111111110 02456788888765 4
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR- 477 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~- 477 (1396)
.+..+++.|.+.. .++++..+||. |+.++|.+++++|++|+.+|||||+++|+|||+|++++||++|.|.
T Consensus 468 ~a~~~~~~L~~~~---~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 468 AAEALYERLKKAF---PKYNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred HHHHHHHHHHhhC---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcC
Confidence 5667777777542 46889999998 6999999999999999999999999999999999999999999987
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEE
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMV 500 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv 500 (1396)
+..+|.|++|||||.| |.++++.
T Consensus 539 gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 539 GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 6889999999999987 5666666
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=284.63 Aligned_cols=331 Identities=21% Similarity=0.244 Sum_probs=240.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHH--HHhc----CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYA--YLLR----KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~--~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
....|.|.|.+.++.++.| +.|-.+-||||||+++++.+--++ +... .+.++.-+|+||+++|+.|.++.+..
T Consensus 189 GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 3456899999999999998 899999999999999998433322 2222 34688899999999999999998887
Q ss_pred hc---------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---
Q 000607 91 HT---------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK--- 158 (1396)
Q Consensus 91 ~~---------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~--- 158 (1396)
+. .++..++.|+..+. .+.+..-.+.+|+|+||++|.++|....++++-..++.+|||+++.+-
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~----eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVR----EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHH----HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 64 25778888886654 455566678999999999999999999999999999999999999864
Q ss_pred CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeE
Q 000607 159 HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFK 238 (1396)
Q Consensus 159 ~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~ 238 (1396)
...+.|+..|. ...+.|++|||... +|......---+-.++
T Consensus 345 ddir~iF~~FK---------~QRQTLLFSATMP~------------KIQ~FAkSALVKPvtv------------------ 385 (610)
T KOG0341|consen 345 DDIRTIFSFFK---------GQRQTLLFSATMPK------------KIQNFAKSALVKPVTV------------------ 385 (610)
T ss_pred hhHHHHHHHHh---------hhhheeeeeccccH------------HHHHHHHhhcccceEE------------------
Confidence 23344444332 23468999999754 2222211000000000
Q ss_pred eccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccch
Q 000607 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDF 318 (1396)
Q Consensus 239 ~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~ 318 (1396)
......- . .++
T Consensus 386 NVGRAGA-----A----sld------------------------------------------------------------ 396 (610)
T KOG0341|consen 386 NVGRAGA-----A----SLD------------------------------------------------------------ 396 (610)
T ss_pred ecccccc-----c----chh------------------------------------------------------------
Confidence 0000000 0 000
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHH
Q 000607 319 FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ 398 (1396)
+.+.+.-.. ...|+-.|++-|.. ....++||++.+.
T Consensus 397 --------------------ViQevEyVk--------------------qEaKiVylLeCLQK----T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 397 --------------------VIQEVEYVK--------------------QEAKIVYLLECLQK----TSPPVLIFAEKKA 432 (610)
T ss_pred --------------------HHHHHHHHH--------------------hhhhhhhHHHHhcc----CCCceEEEecccc
Confidence 000000000 03455555565544 5678999999999
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s 478 (1396)
.++.+.++|-- +|+.+..+||.. .+.+|...++.||.|+..|||||+|++.|+|+|++.+|||||+|..
T Consensus 433 DVD~IhEYLLl-----KGVEavaIHGGK------DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~e 501 (610)
T KOG0341|consen 433 DVDDIHEYLLL-----KGVEAVAIHGGK------DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEE 501 (610)
T ss_pred ChHHHHHHHHH-----ccceeEEeecCc------chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHH
Confidence 99999998863 689999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCC--CcEEEEEecCC-cchHHHHHHHH
Q 000607 479 VCSFIQSRGRARMQN--SDYLLMVKSGD-STTQSRLENYL 515 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g--s~~i~lv~~~~-~~~~~~i~~~~ 515 (1396)
..+|+||+||+||.| +-...|+.... ....-+++.++
T Consensus 502 IENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 502 IENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred HHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 999999999999998 45666776432 22333444444
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=287.52 Aligned_cols=361 Identities=21% Similarity=0.304 Sum_probs=232.0
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHhcC--
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-- 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-- 93 (1396)
.|...|..+++.++++ +++|-++||||||+++++.|-+.+..+ ....|.-++||||||+||.|.++.+.+...
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 3889999999999998 799999999999999999665544422 234788899999999999999999998753
Q ss_pred --CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCC---CcHHHHHHH
Q 000607 94 --LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGK---HQYACIMTE 167 (1396)
Q Consensus 94 --~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~---~~~~~im~~ 167 (1396)
+-.+.+.|+.... ..-.+.-++..|+|+||++|+|.|.+. .+.++++..||||||+++..- ....+|++.
T Consensus 239 hWIVPg~lmGGEkkK----SEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKK----SEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred eEEeeceeecccccc----cHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH
Confidence 3334455553222 222344458999999999999998864 678899999999999999853 234444443
Q ss_pred HHHhhccC--CCCCCC---eEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEecc
Q 000607 168 FYHRLLET--GDSNLP---RIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 168 f~~~~~~~--~~~~~p---~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
. +..-+. .....| .-+++|||...+ +..|.. .|+..++...+...... . |+..
T Consensus 315 v-~~~~~~e~~~~~lp~q~q~mLlSATLtd~------------V~rLa~~sLkDpv~I~ld~s~~~~-~--p~~~----- 373 (708)
T KOG0348|consen 315 V-HSIQNAECKDPKLPHQLQNMLLSATLTDG------------VNRLADLSLKDPVYISLDKSHSQL-N--PKDK----- 373 (708)
T ss_pred H-hhccchhcccccccHHHHhHhhhhhhHHH------------HHHHhhccccCceeeeccchhhhc-C--cchh-----
Confidence 3 111000 111233 356889997542 223321 22322222111100000 0 0000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
.+.+.. -|+. ...
T Consensus 374 --------------a~~ev~-------------------------------------~~~~------------~~~---- 386 (708)
T KOG0348|consen 374 --------------AVQEVD-------------------------------------DGPA------------GDK---- 386 (708)
T ss_pred --------------hhhhcC-------------------------------------Cccc------------ccc----
Confidence 000000 0000 000
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccH--HHHHHHHHHhh-hcCCCCeeEEEEechHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTE--KIVCLIESLLE-YRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--Kv~~L~~~L~~-~~~~~~~k~IIFv~~r~ 398 (1396)
++.. .+-+.+.+.+ -...+ ++-.|..+|.+ .......+.|||+.+.+
T Consensus 387 --l~~~----------~iPeqL~qry------------------~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 387 --LDSF----------AIPEQLLQRY------------------TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred --cccc----------cCcHHhhhce------------------EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 0000 0000010000 00122 23345555544 23345669999999999
Q ss_pred HHHHHHHHHHhhc----------CC-------CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 399 TAIVLQSLLSELL----------PR-------HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 399 ta~~L~~~L~~~~----------p~-------~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
.++.=+.+|.+.. |. +-+.++..+||. |++.+|..+++.|+...--||+||+|+++|
T Consensus 437 ~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs------m~QeeRts~f~~Fs~~~~~VLLcTDVAaRG 510 (708)
T KOG0348|consen 437 SVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS------MEQEERTSVFQEFSHSRRAVLLCTDVAARG 510 (708)
T ss_pred HHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc------hhHHHHHHHHHhhccccceEEEehhhhhcc
Confidence 9998888887542 11 113455667776 899999999999999888899999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchHH
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQS 509 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~ 509 (1396)
+|+|.+.+||.||+|.+..+|+||+||+.|.| |..++|+...+.+...
T Consensus 511 LDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 511 LDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred CCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999999999999999999988 6777777666444333
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=325.56 Aligned_cols=325 Identities=21% Similarity=0.274 Sum_probs=216.8
Q ss_pred CcccchHHHHHHHHH-HhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh--cC
Q 000607 18 TLPFARNYQLEALEN-ALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH--TD 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~-~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~--~~ 93 (1396)
....++++|.++++. ++.+ |+++++|||||||++|.++|.... .+ ++.++++|+|+++|+.|+++.++.+ .+
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l--~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL--LR--EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHH--Hh--cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 345699999999986 4555 899999999999999987554321 11 3568999999999999999999864 47
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..++|+...+ ..| ..+++|+|+||+.+..+++++...++++++||+||||.+...+. ...+......
T Consensus 96 ~~v~~~~Gd~~~~----~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r-g~~le~il~~-- 165 (720)
T PRK00254 96 LRVAMTTGDYDST----DEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR-GATLEMILTH-- 165 (720)
T ss_pred CEEEEEeCCCCCc----hhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc-hHHHHHHHHh--
Confidence 8999999985432 223 35789999999999988887766678999999999999975422 2222222211
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....++++|||||+.+ ...+..+++...+.. .+.+.|....+.+........
T Consensus 166 ---l~~~~qiI~lSATl~n-------------~~~la~wl~~~~~~~-------~~rpv~l~~~~~~~~~~~~~~----- 217 (720)
T PRK00254 166 ---MLGRAQILGLSATVGN-------------AEELAEWLNAELVVS-------DWRPVKLRKGVFYQGFLFWED----- 217 (720)
T ss_pred ---cCcCCcEEEEEccCCC-------------HHHHHHHhCCccccC-------CCCCCcceeeEecCCeeeccC-----
Confidence 1245799999999965 234556666543211 111111110111100000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
... .
T Consensus 218 ------------------------------------------------------------------------~~~----~ 221 (720)
T PRK00254 218 ------------------------------------------------------------------------GKI----E 221 (720)
T ss_pred ------------------------------------------------------------------------cch----h
Confidence 000 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
. ........+.+.+. .+.++||||++|..+..++..|......
T Consensus 222 ~--------------------------------~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~ 264 (720)
T PRK00254 222 R--------------------------------FPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKR 264 (720)
T ss_pred c--------------------------------chHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHH
Confidence 0 00001111222222 3568999999999988777666421000
Q ss_pred --------------------C--------CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 414 --------------------H--------CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 414 --------------------~--------~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
. -...+.+.||. |++++|..+.+.|++|.++|||||+++++|+|+|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag------l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnip 338 (720)
T PRK00254 265 FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG------LGRTERVLIEDAFREGLIKVITATPTLSAGINLP 338 (720)
T ss_pred hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC------CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCC
Confidence 0 01135566665 7999999999999999999999999999999999
Q ss_pred cccEEEE-------eCCCC-cHHHHHHhhhcccCCC----CcEEEEEecC
Q 000607 466 SCNLVIM-------FDPSR-TVCSFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~-------fD~p~-s~~~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
+.++||+ |+.|. +..+|.||.|||||.| |.+++++...
T Consensus 339 a~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 339 AFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred ceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999994 55544 4668999999999976 5677776543
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=281.35 Aligned_cols=327 Identities=23% Similarity=0.283 Sum_probs=244.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHH--HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAY--LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~--~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.+|++.|-.+++.++.+ ++|-.+-||||||-+++..+ -++.+ .+..+.++..+|||||++|+.|...+.+++.
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 45899999999999998 79999999999999887633 22222 1233578899999999999999999999884
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--cHHHHHHHHHH
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--QYACIMTEFYH 170 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~f~~ 170 (1396)
++++..++|+.. .|.+ ...+-.++.||||||++|++++.-+-.++.++++||||||+++..-. +-.+-+...
T Consensus 324 gl~~v~~ygGgs--k~eQ--~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~h-- 397 (731)
T KOG0339|consen 324 GLRVVAVYGGGS--KWEQ--SKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQH-- 397 (731)
T ss_pred cceEEEeecCCc--HHHH--HHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhh--
Confidence 789999999754 3433 23344689999999999999999999999999999999999998632 111112221
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
...-.+.|.++||-.. .|..|. ..|...+..+. -+.
T Consensus 398 ------irpdrQtllFsaTf~~------------kIe~lard~L~dpVrvVq------------------g~v------- 434 (731)
T KOG0339|consen 398 ------IRPDRQTLLFSATFKK------------KIEKLARDILSDPVRVVQ------------------GEV------- 434 (731)
T ss_pred ------cCCcceEEEeeccchH------------HHHHHHHHHhcCCeeEEE------------------eeh-------
Confidence 1233568999998532 344442 22322222110 000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
.. ..+
T Consensus 435 ge---------------------------------------------------------------------------an~ 439 (731)
T KOG0339|consen 435 GE---------------------------------------------------------------------------ANE 439 (731)
T ss_pred hc---------------------------------------------------------------------------ccc
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
++.+.+ ..+ .....|+..|+.-|..+. ...++||||..+..++.+...|+-
T Consensus 440 --------dITQ~V-~V~------------------~s~~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 440 --------DITQTV-SVC------------------PSEEKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred --------chhhee-eec------------------cCcHHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhcc
Confidence 000000 000 111568888888887763 567999999999999999999884
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
+++++..+||+ |.+.+|.++|.+|+.+.+.|||||+|+.+|+|||+...||+||.-.+...|.||+||+
T Consensus 491 -----k~~~v~llhgd------kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 491 -----KGFNVSLLHGD------KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred -----ccceeeeecCc------hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 68999999998 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSR 510 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~ 510 (1396)
||.| +..+.++++.|....-.
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred ccccccceeeEEechhhHHHhhH
Confidence 9998 67888888666554333
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=279.18 Aligned_cols=335 Identities=22% Similarity=0.249 Sum_probs=239.6
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHHHHHhc---CCCCcEEEEEeCCcccHHHHHHHHHHhc---
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSYAYLLR---KPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l~~~~~---~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.|.-.|..+++-+++| |+++.+-||||||.++++. +..++..-. ...+..+++||||++||.|.+.++.+..
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998 8999999999999999984 444433221 2256789999999999999999998753
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC-ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY-FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
.+++..++.+++.. ..-....+.++|+|+||..++.++..+. ..++.++++|+|||+.+..- -|..-|+...
T Consensus 121 ~k~lr~~nl~s~~sds----v~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk~l~ 195 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDS----VNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLKKLR 195 (569)
T ss_pred HHhhhhhhhhcccchH----HHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHHHHH
Confidence 35666666554432 1224455679999999999999999887 67888999999999998864 4666666554
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc--h
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP--H 247 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~--~ 247 (1396)
.. ..+.-+-++||||... .+..|..++- ..|.... ....+.+ +
T Consensus 196 ~~-----LPr~~Q~~LmSATl~d------------Dv~~LKkL~l----------------~nPviLk--l~e~el~~~d 240 (569)
T KOG0346|consen 196 SH-----LPRIYQCFLMSATLSD------------DVQALKKLFL----------------HNPVILK--LTEGELPNPD 240 (569)
T ss_pred Hh-----CCchhhheeehhhhhh------------HHHHHHHHhc----------------cCCeEEE--eccccCCCcc
Confidence 22 1234457899999743 2334433221 1121111 1110111 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.+.. +. +
T Consensus 241 qL~Q----------------------------------------------------------y~------------v--- 247 (569)
T KOG0346|consen 241 QLTQ----------------------------------------------------------YQ------------V--- 247 (569)
T ss_pred cceE----------------------------------------------------------EE------------E---
Confidence 0000 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
......|...+.-+|+-- --..+.|||||+...+..|.-+|
T Consensus 248 -------------------------------------~cse~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkLfL 288 (569)
T KOG0346|consen 248 -------------------------------------KCSEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKLFL 288 (569)
T ss_pred -------------------------------------EeccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHHHH
Confidence 000133444444444331 12468999999999999999999
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-------------------------------
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS------------------------------- 456 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs------------------------------- 456 (1396)
.+. |++..++.|. |+...|.-+++.|..|-..++|||+
T Consensus 289 eqF-----GiksciLNse------LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~ 357 (569)
T KOG0346|consen 289 EQF-----GIKSCILNSE------LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKL 357 (569)
T ss_pred HHh-----CcHhhhhccc------ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccccccc
Confidence 975 8998889887 6899999999999999999999999
Q ss_pred ----ccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchHHHHHHHHHHH
Q 000607 457 ----ILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLASG 518 (1396)
Q Consensus 457 ----vleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~~e 518 (1396)
-+++|||+..++.|||||+|.+..+||||+||++|.+ |..+.|+...+......++..+..+
T Consensus 358 D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 358 DKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred CchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 1357999999999999999999999999999999987 5788888766555555666665554
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=326.14 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=207.6
Q ss_pred ccCCCcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH
Q 000607 14 VSADTLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE 86 (1396)
Q Consensus 14 ~~~~~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~ 86 (1396)
......+.|++.|.++++.++++ |+++++|||+|||.+|+.++..... .+++++|||||++|+.|+++
T Consensus 593 ~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHH
Confidence 33444557999999999999873 7999999999999998865543321 46789999999999999999
Q ss_pred HHHHhc---CCeEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH
Q 000607 87 AIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA 162 (1396)
Q Consensus 87 ~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~ 162 (1396)
.+++.+ ++++..++|..+...+ ...|.... ...+|+|+||+.+. ..+.+.+++++|+||+|++... ..
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~~--~~ 739 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGVR--HK 739 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcchh--HH
Confidence 998754 5678888887543311 11222222 36899999997542 3456789999999999998432 12
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHH-HHHHhCCeEEeccChhhhcccccCCcceeEecc
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHD-LETLMNSKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~-Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
..++ .....+++++|||||.... +.. +....+..+... .|...
T Consensus 740 e~lk---------~l~~~~qvLl~SATpiprt-----------l~l~~~gl~d~~~I~~-----------~p~~r----- 783 (1147)
T PRK10689 740 ERIK---------AMRADVDILTLTATPIPRT-----------LNMAMSGMRDLSIIAT-----------PPARR----- 783 (1147)
T ss_pred HHHH---------hcCCCCcEEEEcCCCCHHH-----------HHHHHhhCCCcEEEec-----------CCCCC-----
Confidence 2221 1123568999999996521 100 001111111100 00000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
.+.. .
T Consensus 784 ---~~v~---------------------~--------------------------------------------------- 788 (1147)
T PRK10689 784 ---LAVK---------------------T--------------------------------------------------- 788 (1147)
T ss_pred ---CCce---------------------E---------------------------------------------------
Confidence 0000 0
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAI 401 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~ 401 (1396)
. . ... ....-|.. ++.+. ..+.+++|||+++..+.
T Consensus 789 ------------------------~-------~------~~~--~~~~~k~~----il~el--~r~gqv~vf~n~i~~ie 823 (1147)
T PRK10689 789 ------------------------F-------V------REY--DSLVVREA----ILREI--LRGGQVYYLYNDVENIQ 823 (1147)
T ss_pred ------------------------E-------E------Eec--CcHHHHHH----HHHHH--hcCCeEEEEECCHHHHH
Confidence 0 0 000 00000111 11111 13468999999999999
Q ss_pred HHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCC-CcHH
Q 000607 402 VLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS-RTVC 480 (1396)
Q Consensus 402 ~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p-~s~~ 480 (1396)
.+++.|++..| ++++..+||. |++++|.+++.+|++|+++|||||+++|+|||+|++++||..+.. .+..
T Consensus 824 ~la~~L~~~~p---~~~v~~lHG~------m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 824 KAAERLAELVP---EARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred HHHHHHHHhCC---CCcEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 99999997633 5788999997 799999999999999999999999999999999999999944332 2455
Q ss_pred HHHHhhhcccCCC--CcEEEEEe
Q 000607 481 SFIQSRGRARMQN--SDYLLMVK 501 (1396)
Q Consensus 481 ~yiQr~GRA~R~g--s~~i~lv~ 501 (1396)
+|+|++||+||.| +.+++++.
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeC
Confidence 8999999999988 34555554
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=286.48 Aligned_cols=329 Identities=16% Similarity=0.245 Sum_probs=245.5
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh----c
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH----T 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~----~ 92 (1396)
....|.+.|..+++.++.+ +.||.+-.|+|||+++..+... .+.........+|++|||+++.|..+.++.. .
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~--sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~ 121 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVE--SLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFT 121 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeeh--hcCcccCcceeEEEecchhhhhHHHHHHHHhccccc
Confidence 3445789999999999998 9999999999999998764322 1122335677999999999999999999864 5
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
|+++..+.|+.... .-...+..++|+|+||+++..++..+.+++++++|+|+|||+.+.....++.-+...+..
T Consensus 122 g~~csvfIGGT~~~-----~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s- 195 (980)
T KOG4284|consen 122 GARCSVFIGGTAHK-----LDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS- 195 (980)
T ss_pred CcceEEEecCchhh-----hhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh-
Confidence 89999999986543 224556689999999999999999999999999999999999999876777666666643
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
.....+++.+|||-..+- -..|...| ..|.... +..... .+..
T Consensus 196 ----lP~~rQv~a~SATYp~nL-----------dn~Lsk~m-----------------rdp~lVr--~n~~d~--~L~G- 238 (980)
T KOG4284|consen 196 ----LPQIRQVAAFSATYPRNL-----------DNLLSKFM-----------------RDPALVR--FNADDV--QLFG- 238 (980)
T ss_pred ----cchhheeeEEeccCchhH-----------HHHHHHHh-----------------cccceee--cccCCc--eeec-
Confidence 245668999999975421 11122222 2222111 111000 0000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
+ ++|...+..
T Consensus 239 i--------kQyv~~~~s-------------------------------------------------------------- 248 (980)
T KOG4284|consen 239 I--------KQYVVAKCS-------------------------------------------------------------- 248 (980)
T ss_pred h--------hheeeeccC--------------------------------------------------------------
Confidence 0 000000000
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
....-....-|++.|-+++++. +-.++||||+....|+-++..|+.
T Consensus 249 ----------------------------~nnsveemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~s--- 294 (980)
T KOG4284|consen 249 ----------------------------PNNSVEEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKS--- 294 (980)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhc---
Confidence 0000000134666677776663 567899999999999999999996
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.|+.|.++.|. |++++|..+++.+|+-.++|||+|+..++|||-+.+|+||+.|.|.+-..|.||+|||||-
T Consensus 295 --sG~d~~~ISga------M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRF 366 (980)
T KOG4284|consen 295 --SGLDVTFISGA------MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRF 366 (980)
T ss_pred --cCCCeEEeccc------cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccc
Confidence 59999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--cEEEEEecC
Q 000607 493 NS--DYLLMVKSG 503 (1396)
Q Consensus 493 gs--~~i~lv~~~ 503 (1396)
|+ -.+.++..+
T Consensus 367 G~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 367 GAHGAAVTLLEDE 379 (980)
T ss_pred cccceeEEEeccc
Confidence 94 566777654
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=303.07 Aligned_cols=400 Identities=17% Similarity=0.215 Sum_probs=236.2
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-C
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-L 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-~ 94 (1396)
.+|+||.+++..++. + |+|+++++|.|||++++.++.++... .+..+.+|||||. .|+.||.++++++++ +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~--~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY--RGITGPHMVVAPK-STLGNWMNEIRRFCPVL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh--cCCCCCEEEEeCh-HHHHHHHHHHHHHCCCC
Confidence 589999999998863 3 79999999999999999888765432 2234568999999 788999999999875 6
Q ss_pred eEEEEeCCCCcccCCccchHH--hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCc-HHHHHHHHHHh
Q 000607 95 KVGKYWGDMGVDFWDGATWKE--EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQ-YACIMTEFYHR 171 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~--~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~im~~f~~~ 171 (1396)
++..++|..... ...... .....+|+|+||+.+..... .+.--.|++||+||||++++..+ ..+.++.+
T Consensus 246 ~v~~~~G~~~eR---~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L--- 317 (1033)
T PLN03142 246 RAVKFHGNPEER---AHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF--- 317 (1033)
T ss_pred ceEEEeCCHHHH---HHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh---
Confidence 888888863211 000111 12368999999999876432 33334689999999999987532 22223222
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
..++.++|||||+.++.. .+..|-+.+...++. +...+..+...+.. ........
T Consensus 318 -------~a~~RLLLTGTPlqNnl~--------ELwsLL~FL~P~~f~--s~~~F~~~f~~~~~--------~~~~e~i~ 372 (1033)
T PLN03142 318 -------STNYRLLITGTPLQNNLH--------ELWALLNFLLPEIFS--SAETFDEWFQISGE--------NDQQEVVQ 372 (1033)
T ss_pred -------hcCcEEEEecCCCCCCHH--------HHHHHHhcCCCCcCC--CHHHHHHHHccccc--------cchHHHHH
Confidence 235679999999987522 233333333332222 11112111111000 00000000
Q ss_pred HHHHH-----HHHHHHHHHhhhhh-------hchhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhhccccch
Q 000607 252 HLADE-----LAMIELKHTRSLEN-------LDLNEAQAELIRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDF 318 (1396)
Q Consensus 252 ~l~~~-----l~~l~~~~~~~l~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~ 318 (1396)
.+... +..........|.. ..+.. ..+.+ ..+...........+.
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~-----~Qk~lY~~ll~k~~~~l~~g~~----------------- 430 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQ-----MQKQYYKALLQKDLDVVNAGGE----------------- 430 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCH-----HHHHHHHHHHHHHHHHHhcccc-----------------
Confidence 11111 11111111111110 00000 00000 0000000000000000
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEec
Q 000607 319 FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~ 395 (1396)
..-+..+...++..+.....+.......... ..-..|.|+..|.++|.... ..+.|+|||++
T Consensus 431 --------------~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk-~~g~KVLIFSQ 495 (1033)
T PLN03142 431 --------------RKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLK-ERDSRVLIFSQ 495 (1033)
T ss_pred --------------HHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHH-hcCCeEEeehh
Confidence 0000000011111110000000000000000 00123789999998888763 46789999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC---CeeEEEEecccccccCCCcccEEEE
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG---LVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g---~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
...+...|.+.|.. .++.+..++|.. +..+|+.++++|++. ...+|++|.++++|||++.+++||+
T Consensus 496 ft~~LdiLed~L~~-----~g~~y~rIdGst------s~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 496 MTRLLDILEDYLMY-----RGYQYCRIDGNT------GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred HHHHHHHHHHHHHH-----cCCcEEEECCCC------CHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 99999999999985 478899999984 899999999999763 3468999999999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 473 FDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
||++||+....|+.|||.|.|+ .++.|+..+.
T Consensus 565 yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 565 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999996 3566776663
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=300.27 Aligned_cols=329 Identities=23% Similarity=0.288 Sum_probs=226.4
Q ss_pred cchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH--HhcCCeE
Q 000607 21 FARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK--MHTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~--~~~~~~v 96 (1396)
.+.+.|+++++....+ |+||++|||||||++|.+.|..-.. + .+.+++++||+++|+.|.++.++ ...|++|
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~---~-~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL---E-GGGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH---h-cCCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 6889999999887764 9999999999999999997654322 1 25679999999999999999999 5679999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC--CcH-HHHHHHHHHhhc
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK--HQY-ACIMTEFYHRLL 173 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~--~~~-~~im~~f~~~~~ 173 (1396)
+..+|+.... ...+.+++|+|+||+.+...+++...-+..++++|+||+|.+.+. .|- -.|..... .
T Consensus 107 ~~~TgD~~~~-------~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~-~-- 176 (766)
T COG1204 107 GISTGDYDLD-------DERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR-R-- 176 (766)
T ss_pred EEecCCcccc-------hhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH-h--
Confidence 9999996544 355678999999999999999988777889999999999999865 222 22222222 1
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....||+|||||..+ ..++-.+++++.... .|.+.|-...+.+...-.
T Consensus 177 ---~~~~~rivgLSATlpN-------------~~evA~wL~a~~~~~-------~~rp~~l~~~v~~~~~~~-------- 225 (766)
T COG1204 177 ---LNELIRIVGLSATLPN-------------AEEVADWLNAKLVES-------DWRPVPLRRGVPYVGAFL-------- 225 (766)
T ss_pred ---hCcceEEEEEeeecCC-------------HHHHHHHhCCccccc-------CCCCcccccCCccceEEE--------
Confidence 1223799999999976 556778888865411 111111111111110000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
.
T Consensus 226 ----------------~--------------------------------------------------------------- 226 (766)
T COG1204 226 ----------------G--------------------------------------------------------------- 226 (766)
T ss_pred ----------------E---------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc--
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL-- 411 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-- 411 (1396)
..+ ... .. ...+-....+++... ...+.++||||++|..+...++.|....
T Consensus 227 --------------------~~~-~~k-~~----~~~~~~~~~~~v~~~-~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~ 279 (766)
T COG1204 227 --------------------ADG-KKK-TW----PLLIDNLALELVLES-LAEGGQVLVFVHSRKEAEKTAKKLRIKMSA 279 (766)
T ss_pred --------------------ecC-ccc-cc----cccchHHHHHHHHHH-HhcCCeEEEEEecCchHHHHHHHHHHHHhh
Confidence 000 000 00 000011111111111 2467899999999999988888887311
Q ss_pred --CCC----CCceeeEE------------------ecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcc
Q 000607 412 --PRH----CTWKTKYI------------------AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSC 467 (1396)
Q Consensus 412 --p~~----~~~~~~~l------------------~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~ 467 (1396)
... ......-+ .|-.-++++|+..+|.-+-+.||.|.++||+||+.++.|+|+|+-
T Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~ 359 (766)
T COG1204 280 TLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359 (766)
T ss_pred cCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcce
Confidence 000 00111111 122224578999999999999999999999999999999999998
Q ss_pred cEEE----EeC-----CCCcHHHHHHhhhcccCCC----CcEEEEE
Q 000607 468 NLVI----MFD-----PSRTVCSFIQSRGRARMQN----SDYLLMV 500 (1396)
Q Consensus 468 ~lVI----~fD-----~p~s~~~yiQr~GRA~R~g----s~~i~lv 500 (1396)
.+|| +|| .+-+.-+++|+.|||||.| +..+++.
T Consensus 360 ~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 360 TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred EEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 8888 688 5667889999999999998 3445554
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=261.58 Aligned_cols=330 Identities=17% Similarity=0.219 Sum_probs=226.6
Q ss_pred ccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 20 PFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
-.|...|..+++-++.. |.|..+..|+|||.++++.+..-.+ -.-..+.++.|+||++|+.|.-+++.+. ++
T Consensus 111 ~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd--~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ 188 (477)
T KOG0332|consen 111 QKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD--PDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE 188 (477)
T ss_pred CCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC--ccccCCCceeeCchHHHHHHHHHHHHHhcCcee
Confidence 34788999999999984 9999999999999999876542211 1113456888899999999999888864 34
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-cCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
++.....-+... -+...-..+|++.||+++++.+.. ..+.++.+..+|+|||+++.+..-+...-...++
T Consensus 189 ita~yair~sk~-------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~-- 259 (477)
T KOG0332|consen 189 LTASYAIRGSKA-------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMR-- 259 (477)
T ss_pred eeEEEEecCccc-------ccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhh--
Confidence 444433332111 122223579999999999998887 7888999999999999999864211111111110
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
...+.-+++.+|||-... .... ....++.+....+.-....
T Consensus 260 ---~lP~~~QllLFSATf~e~------------V~~F----------------a~kivpn~n~i~Lk~eel~-------- 300 (477)
T KOG0332|consen 260 ---SLPRNQQLLLFSATFVEK------------VAAF----------------ALKIVPNANVIILKREELA-------- 300 (477)
T ss_pred ---hcCCcceEEeeechhHHH------------HHHH----------------HHHhcCCCceeeeehhhcc--------
Confidence 112345788999985321 1111 0111122221111000000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
|.
T Consensus 301 ---------------L~--------------------------------------------------------------- 302 (477)
T KOG0332|consen 301 ---------------LD--------------------------------------------------------------- 302 (477)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.+.+.. +.-.....|.+.|.++... -.-.+.||||.++.+|..|+..+..
T Consensus 303 ---------~IkQly---------------v~C~~~~~K~~~l~~lyg~---~tigqsiIFc~tk~ta~~l~~~m~~--- 352 (477)
T KOG0332|consen 303 ---------NIKQLY---------------VLCACRDDKYQALVNLYGL---LTIGQSIIFCHTKATAMWLYEEMRA--- 352 (477)
T ss_pred ---------chhhhe---------------eeccchhhHHHHHHHHHhh---hhhhheEEEEeehhhHHHHHHHHHh---
Confidence 000000 0001115677777775433 2456789999999999999999986
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC------cHHHHHHhh
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR------TVCSFIQSR 486 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~------s~~~yiQr~ 486 (1396)
.|..+.++||+ |+-.+|..++++||.|..+|||+|+|.++|||++.+++||+||+|. .+..|+||+
T Consensus 353 --~Gh~V~~l~G~------l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRi 424 (477)
T KOG0332|consen 353 --EGHQVSLLHGD------LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRI 424 (477)
T ss_pred --cCceeEEeecc------chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHh
Confidence 48999999998 6889999999999999999999999999999999999999999996 578999999
Q ss_pred hcccCCC--CcEEEEEecCC-cchHHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGD-STTQSRLENYL 515 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~-~~~~~~i~~~~ 515 (1396)
||+||-| |-.+.|++.++ ......|+++.
T Consensus 425 GRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 425 GRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred cccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 9999988 56778887554 33445666655
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=294.71 Aligned_cols=303 Identities=17% Similarity=0.175 Sum_probs=197.0
Q ss_pred ccchHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-----
Q 000607 20 PFARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----- 92 (1396)
+.|++||.++++.++.|+ +++.+|||||||.++...+..+ .......++++++|||++|+.|.++.++++.
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 449999999999999973 7778999999998543211111 1112234567778899999999999888653
Q ss_pred ---------------------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc------------
Q 000607 93 ---------------------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF------------ 139 (1396)
Q Consensus 93 ---------------------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~------------ 139 (1396)
++++..++|+...+ .+|.....+++|||+|++.+ .++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~----~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN----DEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKSRP 163 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChH----HHHHhcCCCCcEEEECHHHH----cCCcccccccccccccc
Confidence 37788899986544 67888878899999996444 33333
Q ss_pred ----cccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC-CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC
Q 000607 140 ----KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL-PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN 214 (1396)
Q Consensus 140 ----~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~-p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~ 214 (1396)
.++++++||+||||.. ..+...+........ ...... .++++||||+... +..+...+.
T Consensus 164 i~ag~L~~v~~LVLDEADLd---~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~e------------i~~l~~~~~ 227 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAHLE---PAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTD------------GPDRTTLLS 227 (844)
T ss_pred chhhhhccceEEEEehhhhc---cccHHHHHHHHHhcc-cCcccccceEEEEecCCCcc------------HHHHHHHHc
Confidence 2678999999999922 245555555443210 011112 3799999998531 112211111
Q ss_pred -CeEE-eccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 000607 215 -SKVY-TCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTL 292 (1396)
Q Consensus 215 -~~i~-~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1396)
.... .+ ..+.... ..+..|-.
T Consensus 228 ~~p~~i~V-----~~~~l~a--~ki~q~v~-------------------------------------------------- 250 (844)
T TIGR02621 228 AEDYKHPV-----LKKRLAA--KKIVKLVP-------------------------------------------------- 250 (844)
T ss_pred cCCceeec-----ccccccc--cceEEEEe--------------------------------------------------
Confidence 1000 00 0000000 00000000
Q ss_pred HHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHH
Q 000607 293 LYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI 372 (1396)
Q Consensus 293 ~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv 372 (1396)
. ....|+
T Consensus 251 ---------------------------------v----------------------------------------~~e~Kl 257 (844)
T TIGR02621 251 ---------------------------------P----------------------------------------SDEKFL 257 (844)
T ss_pred ---------------------------------c----------------------------------------ChHHHH
Confidence 0 001111
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHH-----HHHHHHhc-
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQN-----EIVEEFRR- 446 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~-----~~l~~Fr~- 446 (1396)
..++..+.......+.++||||+++..|..+++.|++. ++ ..+||. |++.+|. +++++|++
T Consensus 258 ~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~------m~q~dR~~~~~~~il~~Fk~~ 324 (844)
T TIGR02621 258 STMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGT------LRGAERDDLVKKEIFNRFLPQ 324 (844)
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCC------CCHHHHhhHHHHHHHHHHhcc
Confidence 11111111111124678999999999999999999863 44 789997 7999999 88999987
Q ss_pred ---CC-------eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 447 ---GL-------VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 447 ---g~-------~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
|+ .+|||||+++|+||||+. ++||+++.| ..+|+||.||++|.|.
T Consensus 325 ~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 325 MLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred ccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 54 789999999999999986 899998877 5899999999999873
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=275.40 Aligned_cols=344 Identities=20% Similarity=0.224 Sum_probs=235.4
Q ss_pred cCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhc--CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 15 SADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLR--KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~--~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.......|.+.|.+++...+.+ |++.++|||||||+.+.+.|- ++....+ ...+-+++|+.||++|+.|.+.++++
T Consensus 152 ~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k 231 (593)
T KOG0344|consen 152 QELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK 231 (593)
T ss_pred hhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh
Confidence 3344556999999999999987 899999999999999998543 3322221 23577899999999999999999998
Q ss_pred hc-----CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCCCcHHH
Q 000607 91 HT-----DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGKHQYAC 163 (1396)
Q Consensus 91 ~~-----~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~ 163 (1396)
+. ++++..+......+. ..-......++|+|.||-.+..++..+. +.+..+..+|+|||+++.+...+..
T Consensus 232 ~~~~~~t~~~a~~~~~~~~~~q---k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 232 YSIDEGTSLRAAQFSKPAYPSQ---KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred cCCCCCCchhhhhcccccchhh---ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHH
Confidence 75 344444444322221 1111112268999999999999988765 7889999999999999998622222
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
-....|... .++.-++=.+|||-.. .+.++....-+.... +.+...
T Consensus 309 Qla~I~sac----~s~~i~~a~FSat~~~------------~VEE~~~~i~~~~~~------------------vivg~~ 354 (593)
T KOG0344|consen 309 QLADIYSAC----QSPDIRVALFSATISV------------YVEEWAELIKSDLKR------------------VIVGLR 354 (593)
T ss_pred HHHHHHHHh----cCcchhhhhhhccccH------------HHHHHHHHhhcccee------------------EEEecc
Confidence 233333221 1122233345665422 111111111100000 000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhh
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQ 323 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 323 (1396)
+. .
T Consensus 355 ---~s----a---------------------------------------------------------------------- 357 (593)
T KOG0344|consen 355 ---NS----A---------------------------------------------------------------------- 357 (593)
T ss_pred ---hh----H----------------------------------------------------------------------
Confidence 00 0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHH
Q 000607 324 LDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVL 403 (1396)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L 403 (1396)
+..+.+ ..... +....|+..+.+++.. .-...++|||++.+.|..|
T Consensus 358 ------------~~~V~Q---elvF~----------------gse~~K~lA~rq~v~~---g~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 358 ------------NETVDQ---ELVFC----------------GSEKGKLLALRQLVAS---GFKPPVLIFVQSKERAKQL 403 (593)
T ss_pred ------------hhhhhh---hheee----------------ecchhHHHHHHHHHhc---cCCCCeEEEEecHHHHHHH
Confidence 000000 00000 1114556666666655 2457899999999999999
Q ss_pred HHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHH
Q 000607 404 QSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFI 483 (1396)
Q Consensus 404 ~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yi 483 (1396)
++.|..+ .++.++++||.. ++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+
T Consensus 404 ~~~L~~~----~~i~v~vIh~e~------~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 404 FEELEIY----DNINVDVIHGER------SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred HHHhhhc----cCcceeeEeccc------chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHH
Confidence 9999633 689999999984 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCC--CcEEEEEecCCcchHHHHHHHHH
Q 000607 484 QSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 484 Qr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
||+||+||+| |.++.|+++.|....+.+.+.+.
T Consensus 474 hrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 474 HRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999988 78999999877766665555443
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=311.10 Aligned_cols=314 Identities=21% Similarity=0.232 Sum_probs=198.2
Q ss_pred EEeCCCchHHHHHHH-HHHHHHHHh-------cCCCCcEEEEEeCCcccHHHHHHHHHH---------------hcCCeE
Q 000607 40 VFLETGSGKTLIAIM-LLRSYAYLL-------RKPSPFVAVFLVPKVVLVPQQAEAIKM---------------HTDLKV 96 (1396)
Q Consensus 40 v~~~TGsGKT~iail-li~~l~~~~-------~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---------------~~~~~v 96 (1396)
|++|||||||++|.+ +|..+.... ...++.++|+|+|+++|+.|+.+.++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999998 455443321 012356899999999999999998863 136889
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCC---cHHHHHHHHHHhh
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKH---QYACIMTEFYHRL 172 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~~ 172 (1396)
+..+|+...+ +........++|+|+||+.|..++.+. ...++++++||+||+|.+.+.. .+...+..+..
T Consensus 81 ~vrtGDt~~~----eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~-- 154 (1490)
T PRK09751 81 GIRTGDTPAQ----ERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDA-- 154 (1490)
T ss_pred EEEECCCCHH----HHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHH--
Confidence 9999986543 222222346899999999999887654 3457899999999999998641 23344444332
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe--EEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK--VYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~--i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.....++++|||||..+ ..++..+|... +..+. ... .++....+.+.. . ...
T Consensus 155 ---l~~~~~QrIgLSATI~n-------------~eevA~~L~g~~pv~Iv~-~~~-----~r~~~l~v~vp~---~-d~~ 208 (1490)
T PRK09751 155 ---LLHTSAQRIGLSATVRS-------------ASDVAAFLGGDRPVTVVN-PPA-----MRHPQIRIVVPV---A-NMD 208 (1490)
T ss_pred ---hCCCCCeEEEEEeeCCC-------------HHHHHHHhcCCCCEEEEC-CCC-----CcccceEEEEec---C-chh
Confidence 12345789999999864 22344555421 11110 000 000000000000 0 000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
. +... .. .... ...
T Consensus 209 ~-~~~~------------~~-------------------------------------------~~~~--------~~~-- 222 (1490)
T PRK09751 209 D-VSSV------------AS-------------------------------------------GTGE--------DSH-- 222 (1490)
T ss_pred h-cccc------------cc-------------------------------------------cccc--------ccc--
Confidence 0 0000 00 0000 000
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHH-HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI-VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv-~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
... .....+.+ ..+++.+ ..+.++|||||+|..|+.++..|++
T Consensus 223 -----------------------------~~r--~~~i~~~v~~~il~~i-----~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 223 -----------------------------AGR--EGSIWPYIETGILDEV-----LRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred -----------------------------hhh--hhhhhHHHHHHHHHHH-----hcCCCEEEECCCHHHHHHHHHHHHH
Confidence 000 00000111 1122221 1356899999999999999999986
Q ss_pred hcCCC-----------------C-----------CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 410 LLPRH-----------------C-----------TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 410 ~~p~~-----------------~-----------~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
..... . .+.+.+.||+ |++++|..+.++|++|++++||||+++|.|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs------LSkeeR~~IE~~fK~G~LrvLVATssLELG 340 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS------VSKEQRAITEQALKSGELRCVVATSSLELG 340 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeecccc------CCHHHHHHHHHHHHhCCceEEEeCcHHHcc
Confidence 42100 0 0112344454 899999999999999999999999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|||+++++||+||.|.+..+|+||+|||||..
T Consensus 341 IDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 341 IDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999964
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=297.76 Aligned_cols=330 Identities=22% Similarity=0.276 Sum_probs=234.8
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHHH--hcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAYL--LRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~~--~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
.|+++|..|++.++.| ++|.++-||||||+.+++++ ++.... .....|+.++|++||++|+.|..+.++++ ++
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 4899999999999998 89999999999999998754 333221 11236899999999999999988888766 58
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc---CccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS---YFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~---~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+++..++|+.+.. +.....-.++.|+||||+++.+.+... ..++.++.++|+|||+++.. .+|..
T Consensus 467 ir~v~vygg~~~~----~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd--------mgfeP 534 (997)
T KOG0334|consen 467 IRVVCVYGGSGIS----QQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD--------MGFEP 534 (997)
T ss_pred ceEEEecCCccHH----HHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe--------eccCc
Confidence 9999999985543 445555668999999999999987643 34566777999999999874 22220
Q ss_pred h---hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 171 R---LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 171 ~---~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
. ++++. ..-.+.+..|||-.. ++..|... ....|.+.++-+..
T Consensus 535 q~~~Ii~nl-rpdrQtvlfSatfpr------------~m~~la~~----------------vl~~Pveiiv~~~s----- 580 (997)
T KOG0334|consen 535 QITRILQNL-RPDRQTVLFSATFPR------------SMEALARK----------------VLKKPVEIIVGGRS----- 580 (997)
T ss_pred ccchHHhhc-chhhhhhhhhhhhhH------------HHHHHHHH----------------hhcCCeeEEEccce-----
Confidence 0 00000 011123333333211 11111000 00011111111000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
T Consensus 581 -------------------------------------------------------------------------------- 580 (997)
T KOG0334|consen 581 -------------------------------------------------------------------------------- 580 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCC-CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS-GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.....+...+.. .....|+..|.++|..+. ++.++||||.....+..|.+-
T Consensus 581 --------------------------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~ 632 (997)
T KOG0334|consen 581 --------------------------VVCKEVTQVVRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRD 632 (997)
T ss_pred --------------------------eEeccceEEEEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHH
Confidence 000000011111 123789999999999974 588999999999999999998
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.. .++.|..+||.. ++.+|..++++||+|.+++||||+++++|+|++...+||+||.|.....|+||.
T Consensus 633 L~~-----ag~~~~slHGgv------~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 633 LQK-----AGYNCDSLHGGV------DQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred HHh-----cCcchhhhcCCC------chHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 886 489999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
||+||.| +.++.|++.++......|-+.+
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999987 5778888765444444444444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=307.62 Aligned_cols=356 Identities=19% Similarity=0.217 Sum_probs=212.7
Q ss_pred ccchHHHHHHHHHHhc------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 20 PFARNYQLEALENALK------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
+.+|+||.++++.+.+ ++++++|+||||||++++.++..+.. ....+++|||||+++|+.|+.+.|+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~---~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK---AKRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh---cCccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 5699999999987763 26999999999999999887766533 34567899999999999999999998632
Q ss_pred C---eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-----cCccccceeEEEEeccccccCC-------
Q 000607 94 L---KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-----SYFKLNMIKVLILDECHHARGK------- 158 (1396)
Q Consensus 94 ~---~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-----~~~~l~~i~llI~DEaH~~~~~------- 158 (1396)
. .+..+++..+... ...-.+.+|+|+|+|.|.+.+.. ....+.++++||+|||||....
T Consensus 489 ~~~~~~~~i~~i~~L~~------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 489 EGDQTFASIYDIKGLED------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccchhhhhchhhhhh------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 1 1111222111000 00122589999999999876532 1245688999999999997420
Q ss_pred -----------CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc
Q 000607 159 -----------HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS 227 (1396)
Q Consensus 159 -----------~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~ 227 (1396)
..|+.++..|- ...|||||||.... ...++..++..+..+.+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd-----------A~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~ 616 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD-----------AVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVI 616 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC-----------ccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHh
Confidence 24455554321 35799999997421 244566677665556555
Q ss_pred ccccC----CcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000607 228 NFIPF----STAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWL 303 (1396)
Q Consensus 228 ~~~~~----~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 303 (1396)
...-. |......+....+...... ....++..... +...... ....+..
T Consensus 617 DG~Lv~~~~p~~i~t~~~~~gi~~~~~e-~~~~~~~~~~~----i~~~~l~---------------d~~~~~~------- 669 (1123)
T PRK11448 617 DGYLIDHEPPIRIETRLSQEGIHFEKGE-EVEVINTQTGE----IDLATLE---------------DEVDFEV------- 669 (1123)
T ss_pred cCCcccCcCCEEEEEEeccccccccccc-hhhhcchhhhh----hhhccCc---------------HHHhhhH-------
Confidence 43322 1111111111111000000 00000000000 0000000 0000000
Q ss_pred HHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-
Q 000607 304 ALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY- 382 (1396)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~- 382 (1396)
..+-..+ +. ......+.+.+.++
T Consensus 670 -----------------------------~~~~~~v---i~------------------------~~~~~~i~~~l~~~l 693 (1123)
T PRK11448 670 -----------------------------EDFNRRV---IT------------------------ESFNRVVCEELAKYL 693 (1123)
T ss_pred -----------------------------HHHHHHH---hh------------------------HHHHHHHHHHHHHHH
Confidence 0000000 00 01111111211111
Q ss_pred cCCCCeeEEEEechHHHHHHHHHHHHhhc----CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe-eEEEEecc
Q 000607 383 RGVEDIRCIIFVERVITAIVLQSLLSELL----PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV-NVIVATSI 457 (1396)
Q Consensus 383 ~~~~~~k~IIFv~~r~ta~~L~~~L~~~~----p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~-nvLVaTsv 457 (1396)
......|+||||.++.+|..+.+.|.+.. +...+..+..++|+. .++.+++++|+++.. +|+|++++
T Consensus 694 ~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~--------~~~~~li~~Fk~~~~p~IlVsvdm 765 (1123)
T PRK11448 694 DPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSI--------DKPDQLIRRFKNERLPNIVVTVDL 765 (1123)
T ss_pred hccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCc--------cchHHHHHHHhCCCCCeEEEEecc
Confidence 11234799999999999999999887642 111223455677763 346789999999887 69999999
Q ss_pred cccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC----CCcEEEEEe
Q 000607 458 LEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ----NSDYLLMVK 501 (1396)
Q Consensus 458 leeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~----gs~~i~lv~ 501 (1396)
+.+|+|+|.|++||.++++.|...|+|++||+.|. |.....+++
T Consensus 766 L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 766 LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred cccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999999999999999999999999885 334455554
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=290.46 Aligned_cols=318 Identities=17% Similarity=0.178 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHH---------HHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSY---------AYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l---------~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
...|.++++.++++ ++|+.++||||||.+.-..+.+. .+... ....+++++++||++|+.|....+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 45788888888876 89999999999998743222221 11111 234568999999999999999998765
Q ss_pred c------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHH
Q 000607 92 T------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 92 ~------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
. +..+...+|+... ..+.......+|+|+|++... ..++++++||+||||...... .++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~---Dll 310 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG---DII 310 (675)
T ss_pred hCccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch---hHH
Confidence 4 3456778887542 222223336799999976322 246789999999999986543 222
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
..+... .....++++.||||+.. ++..+...++. ....+. .....|.+ ..|-...
T Consensus 311 L~llk~----~~~~~rq~ILmSATl~~------------dv~~l~~~~~~p~~I~I~------grt~~pV~--~~yi~~~ 366 (675)
T PHA02653 311 IAVARK----HIDKIRSLFLMTATLED------------DRDRIKEFFPNPAFVHIP------GGTLFPIS--EVYVKNK 366 (675)
T ss_pred HHHHHH----hhhhcCEEEEEccCCcH------------hHHHHHHHhcCCcEEEeC------CCcCCCeE--EEEeecC
Confidence 233221 11233589999999843 12334444432 222110 00001111 1111000
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
.......
T Consensus 367 ~~~~~~~------------------------------------------------------------------------- 373 (675)
T PHA02653 367 YNPKNKR------------------------------------------------------------------------- 373 (675)
T ss_pred cccccch-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
.+.. ..| ..+.+.+.......+.++|||++++..+..+.
T Consensus 374 ---------~y~~-------------------------------~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~ 412 (675)
T PHA02653 374 ---------AYIE-------------------------------EEK-KNIVTALKKYTPPKGSSGIVFVASVSQCEEYK 412 (675)
T ss_pred ---------hhhH-------------------------------HHH-HHHHHHHHHhhcccCCcEEEEECcHHHHHHHH
Confidence 0000 000 01111121111123468999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHH-hcCCeeEEEEecccccccCCCcccEEEEeC---CCC---
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF-RRGLVNVIVATSILEEGLDVQSCNLVIMFD---PSR--- 477 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~F-r~g~~nvLVaTsvleeGiDIp~~~lVI~fD---~p~--- 477 (1396)
+.|++.. .++.+..+||. |++. ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 413 ~~L~~~~---~~~~v~~LHG~------Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 413 KYLEKRL---PIYDFYIIHGK------VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHhhc---CCceEEeccCC------cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 9998641 26889999997 4653 5677887 789999999999999999999999999998 555
Q ss_pred ------cHHHHHHhhhcccCCC-CcEEEEEecCC
Q 000607 478 ------TVCSFIQSRGRARMQN-SDYLLMVKSGD 504 (1396)
Q Consensus 478 ------s~~~yiQr~GRA~R~g-s~~i~lv~~~~ 504 (1396)
|..+|+||+|||||.. |.++.++++++
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~ 515 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL 515 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECHHH
Confidence 7889999999999976 68888887553
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=284.02 Aligned_cols=324 Identities=20% Similarity=0.203 Sum_probs=223.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCcccHHHHHHHHHH---h
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSYAYLL--RKPSPFVAVFLVPKVVLVPQQAEAIKM---H 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l~~~~--~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~ 91 (1396)
...|++.|.++++.+.+| |++|.+|||||||++|.+. +..+.... ....+-.++++.|-++|...+...++. .
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 345999999999999998 9999999999999999984 44443331 112456899999999999988887775 4
Q ss_pred cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 92 TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 92 ~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+|+.+..-+|++... ++-....+-++|+|+||+.|.-++.... -.+.++..+|+||.|.+.++.--.++.-..-
T Consensus 100 ~G~~v~vRhGDT~~~----er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 100 LGIEVAVRHGDTPQS----EKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred cCCccceecCCCChH----HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 689998889986433 1122233368999999999988776532 3468999999999999986532222211111
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-----EEeccChhhhcccccCCcceeEeccCCC
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-----VYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-----i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
+ +..... .++.+|||||... ...+.+.|... +..+.. ...+...++ .
T Consensus 176 -R-L~~l~~-~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~-------~k~~~i~v~-~---- 227 (814)
T COG1201 176 -R-LRELAG-DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA-------AKKLEIKVI-S---- 227 (814)
T ss_pred -H-HHhhCc-ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc-------CCcceEEEE-e----
Confidence 1 111222 6899999999863 33344444332 111100 000000000 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
|..... |
T Consensus 228 -p~~~~~--------------------------------------------------~---------------------- 234 (814)
T COG1201 228 -PVEDLI--------------------------------------------------Y---------------------- 234 (814)
T ss_pred -cCCccc--------------------------------------------------c----------------------
Confidence 000000 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
. ......-...+.+++++ ...+|||+|+|.+|+.+.
T Consensus 235 -----------------------------~----------~~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 235 -----------------------------D----------EELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLA 270 (814)
T ss_pred -----------------------------c----------cchhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHH
Confidence 0 00001122333444433 348999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
..|++. ....+..-||+ ++..+|.++.++|++|+++++|||+.+|-|||+.++++||+|..|.+...++|
T Consensus 271 ~~L~~~----~~~~i~~HHgS------lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQ 340 (814)
T COG1201 271 FRLKKL----GPDIIEVHHGS------LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQ 340 (814)
T ss_pred HHHHHh----cCCceeeeccc------ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhH
Confidence 999976 23444555555 69999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCC---CcEEEEEe
Q 000607 485 SRGRARMQN---SDYLLMVK 501 (1396)
Q Consensus 485 r~GRA~R~g---s~~i~lv~ 501 (1396)
|.||+|+.- |+.+++..
T Consensus 341 RiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 341 RIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred hccccccccCCcccEEEEec
Confidence 999998864 56666654
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=261.47 Aligned_cols=410 Identities=19% Similarity=0.218 Sum_probs=255.8
Q ss_pred ccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-C
Q 000607 20 PFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~ 93 (1396)
-.+|+||.+.+++... | |+|+++.+|.|||++++.++-++.+.... +| .-+|+||...| .+|.++|++++ +
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~-~G-PfLVi~P~StL-~NW~~Ef~rf~P~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGI-PG-PFLVIAPKSTL-DNWMNEFKRFTPS 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCC-CC-CeEEEeeHhhH-HHHHHHHHHhCCC
Confidence 3489999999998875 4 89999999999999999988776553322 33 37999999777 88999999998 5
Q ss_pred CeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC-cHHHHHHHHHH
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH-QYACIMTEFYH 170 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~f~~ 170 (1396)
+++..|+|+..-. ....+..+. ..+|+|+||++.++. ..++.--.|.+||+||||++++.+ --.++++.|.
T Consensus 243 l~~~~~~Gdk~eR---~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~- 316 (971)
T KOG0385|consen 243 LNVVVYHGDKEER---AALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFK- 316 (971)
T ss_pred cceEEEeCCHHHH---HHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhc-
Confidence 8999999984211 011112221 689999999999865 335555679999999999999754 2345566664
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC---eEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS---KVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~---~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
.+..|++|+||..++ +.+|.++|+- .+++ +.+++..+..... ..-..
T Consensus 317 ---------~~nrLLlTGTPLQNN-----------L~ELWaLLnFllPdiF~--~~e~F~swF~~~~--------~~~~~ 366 (971)
T KOG0385|consen 317 ---------TDNRLLLTGTPLQNN-----------LHELWALLNFLLPDIFN--SAEDFDSWFDFTN--------CEGDQ 366 (971)
T ss_pred ---------ccceeEeeCCccccc-----------HHHHHHHHHhhchhhcc--CHHHHHHHHcccc--------cccCH
Confidence 456899999999875 5556555543 2332 2333333322110 00011
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
+ +...+.....++...-...+...+ + .+++.+.-+ .|.-...+ +++.. .....++.-
T Consensus 367 e----~v~~Lh~vL~pFlLRR~K~dVe~s-L-ppKkE~~iy----------vgms~mQk--k~Y~~-----iL~kdl~~~ 423 (971)
T KOG0385|consen 367 E----LVSRLHKVLRPFLLRRIKSDVEKS-L-PPKKELIIY----------VGMSSMQK--KWYKA-----ILMKDLDAL 423 (971)
T ss_pred H----HHHHHHhhhhHHHHHHHHHhHhhc-C-CCcceeeEe----------ccchHHHH--HHHHH-----HHHhcchhh
Confidence 1 111221111111100000000000 0 000000000 00000000 00000 000000000
Q ss_pred h--HHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCC---CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHH
Q 000607 328 G--ETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS---GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIV 402 (1396)
Q Consensus 328 ~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~ 402 (1396)
. ...-+.-+.++...|+.++...--+.-.+..+..... -.-|.|+..|-.+|.... ..+.|++||.+--.+.+.
T Consensus 424 n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDI 502 (971)
T KOG0385|consen 424 NGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDI 502 (971)
T ss_pred cccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHH
Confidence 0 0001334555666666666443322222211111111 123788888888888753 589999999999999888
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTV 479 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~ 479 (1396)
|.+++.- .++....+.|+. +..+|...++.|.... .-.|++|.+++-|||+.++++||.||..|||
T Consensus 503 LeDyc~~-----R~y~ycRiDGSt------~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNP 571 (971)
T KOG0385|consen 503 LEDYCML-----RGYEYCRLDGST------SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNP 571 (971)
T ss_pred HHHHHHh-----cCceeEeecCCC------CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCc
Confidence 8888763 688999999985 8899999999998643 4578899999999999999999999999999
Q ss_pred HHHHHhhhcccCCCC----cEEEEEecC
Q 000607 480 CSFIQSRGRARMQNS----DYLLMVKSG 503 (1396)
Q Consensus 480 ~~yiQr~GRA~R~gs----~~i~lv~~~ 503 (1396)
..-.|+..||+|.|+ .++-++++.
T Consensus 572 Q~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 572 QVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred hhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999996 355666644
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=274.98 Aligned_cols=296 Identities=19% Similarity=0.159 Sum_probs=187.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCccc----CCccc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDF----WDGAT 112 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~----~~~~~ 112 (1396)
+++|.+|||||||.++.+++.+.. ....+.++++++|+++|+.|+++.++..++.+++.++|...... .+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~---~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSI---KSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH---hhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 478999999999999998765442 23456789999999999999999999987777777777532110 00011
Q ss_pred hH----H------hhccCcEEEecHHHHHHhHhhcC----cccc--ceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 113 WK----E------EMSKHEVLVMTPQILLDGLRLSY----FKLN--MIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 113 ~~----~------~~~~~~ViV~T~q~L~~~l~~~~----~~l~--~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
+. . .....+|+|+||+.+++.+.+.+ ..+. ..+++||||||.+.... +.. +.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~-~~~-l~~~l~~l---- 151 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT-LAL-ILAVLEVL---- 151 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH-HHH-HHHHHHHH----
Confidence 11 1 11247899999999988766521 1122 23799999999998531 111 22222111
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADE 256 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~ 256 (1396)
.....++++||||+.. .+.++....... +.. ..++..... ..
T Consensus 152 ~~~~~~~i~~SATlp~------------~l~~~~~~~~~~----------------~~~--~~~~~~~~~-~~------- 193 (358)
T TIGR01587 152 KDNDVPILLMSATLPK------------FLKEYAEKIGYV----------------EFN--EPLDLKEER-RF------- 193 (358)
T ss_pred HHcCCCEEEEecCchH------------HHHHHHhcCCCc----------------ccc--cCCCCcccc-cc-------
Confidence 1234679999999742 121111111000 000 000000000 00
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
.. ..
T Consensus 194 ------------~~----------------------------------------------~~------------------ 197 (358)
T TIGR01587 194 ------------ER----------------------------------------------HR------------------ 197 (358)
T ss_pred ------------cc----------------------------------------------cc------------------
Confidence 00 00
Q ss_pred HHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
+ .. . ......|...+.+++... ..+.++||||+++..+..+++.|++..+ .
T Consensus 198 ------~----------~~---~-----~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~---~ 248 (358)
T TIGR01587 198 ------F----------IK---I-----ESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP---E 248 (358)
T ss_pred ------c----------ee---e-----ccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC---C
Confidence 0 00 0 000012233333444332 2467999999999999999999986421 2
Q ss_pred ceeeEEecCCCCcCCCCHHHHHH----HHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNE----IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~----~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
..+..+||. |++.+|.+ ++++|++|+.++||||+++|+||||+ +++||+++.| ..+|+||.||+||.
T Consensus 249 ~~~~~~h~~------~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~ 319 (358)
T TIGR01587 249 EEIMLLHSR------FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRY 319 (358)
T ss_pred CeEEEEECC------CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCC
Confidence 468899997 57777755 58999999999999999999999995 8999998877 78999999999997
Q ss_pred C
Q 000607 493 N 493 (1396)
Q Consensus 493 g 493 (1396)
|
T Consensus 320 g 320 (358)
T TIGR01587 320 G 320 (358)
T ss_pred C
Confidence 6
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=253.01 Aligned_cols=333 Identities=20% Similarity=0.245 Sum_probs=237.5
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---c
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
.....|...|+.++..+.+| |+++.+++|+|||.++...+....+. ......+++++||++|+.|..++.+.. .
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalilaPtreLa~qi~~v~~~lg~~~ 121 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILAPTRELAQQIQKVVRALGDHM 121 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhcchHHHHHHHHHHHHhhhccc
Confidence 34556899999999999998 99999999999999977665443221 113456999999999999988777764 4
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
+.++..+.|+.+... +.-......++|+|.||+...++++.+.+....+.+.|+|||+......---+| ...
T Consensus 122 ~~~v~~~igg~~~~~---~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI-----~~i 193 (397)
T KOG0327|consen 122 DVSVHACIGGTNVRR---EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQI-----YDI 193 (397)
T ss_pred ceeeeeecCcccchh---hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHH-----HHH
Confidence 678887777754431 111222335899999999999999999888899999999999998864322222 222
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
.+.. +..-+++.+|||-+.. +..+-. +|...|....+..+. ..
T Consensus 194 f~~l-p~~vQv~l~SAT~p~~------------vl~vt~----------------~f~~~pv~i~vkk~~------lt-- 236 (397)
T KOG0327|consen 194 FQEL-PSDVQVVLLSATMPSD------------VLEVTK----------------KFMREPVRILVKKDE------LT-- 236 (397)
T ss_pred HHHc-CcchhheeecccCcHH------------HHHHHH----------------HhccCceEEEecchh------hh--
Confidence 1112 3334899999997541 111111 111222211111110 00
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
+..
T Consensus 237 ---------------l~g-------------------------------------------------------------- 239 (397)
T KOG0327|consen 237 ---------------LEG-------------------------------------------------------------- 239 (397)
T ss_pred ---------------hhh--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
+++.. + +. . ..+|+..|.++.. .-...+|||+++.-+..+...|..
T Consensus 240 ----------ikq~~-------i--~v---~----k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~--- 285 (397)
T KOG0327|consen 240 ----------IKQFY-------I--NV---E----KEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRA--- 285 (397)
T ss_pred ----------eeeee-------e--ec---c----ccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhh---
Confidence 00000 0 00 0 0226666666654 356789999999999999999965
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.++.+.++||. |.+.+|..+++.|++|..+|||+|+.+++|||+..|.+|||||+|.+..+|+||+||+||-
T Consensus 286 --~~~~~s~~~~d------~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 286 --HGFTVSAIHGD------MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRF 357 (397)
T ss_pred --CCceEEEeecc------cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhccccccc
Confidence 48899999998 6999999999999999999999999999999999999999999999999999999999998
Q ss_pred C--CcEEEEEecCCcchHHHHHHHH
Q 000607 493 N--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 493 g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
| +..+.++++.+....+++++++
T Consensus 358 grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 358 GRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred CCCceeeeeehHhhHHHHHhHHHhc
Confidence 8 5678888776665555555443
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=266.59 Aligned_cols=319 Identities=20% Similarity=0.255 Sum_probs=187.8
Q ss_pred HHHHHHHHHhcCC---EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-------CC
Q 000607 25 YQLEALENALKQN---TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-------DL 94 (1396)
Q Consensus 25 yQ~e~~~~~l~~n---~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-------~~ 94 (1396)
+|.++++.+.++| +++++|||||||.++++.+.. ...+++|++|+++|+.||++.++.++ +.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6999999999873 788999999999999875532 13358999999999999999998875 56
Q ss_pred eEEEEeCCCCcc--cCC--------ccc----hHHh--hccCcEEEecHHHHHHhHhhcCc--------cccceeEEEEe
Q 000607 95 KVGKYWGDMGVD--FWD--------GAT----WKEE--MSKHEVLVMTPQILLDGLRLSYF--------KLNMIKVLILD 150 (1396)
Q Consensus 95 ~v~~~~G~~~~~--~~~--------~~~----~~~~--~~~~~ViV~T~q~L~~~l~~~~~--------~l~~i~llI~D 150 (1396)
.+..+.|+...+ .|. .+. ++.. ...++|+++||++|..++.+.+. .+..+++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 677888863322 111 010 1111 23688999999999877654321 14689999999
Q ss_pred ccccccCCCcHHHH-HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHH--hCCeEEeccChhhhc
Q 000607 151 ECHHARGKHQYACI-MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETL--MNSKVYTCASESVLS 227 (1396)
Q Consensus 151 EaH~~~~~~~~~~i-m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~--L~~~i~~~~~~~~l~ 227 (1396)
|+|..........+ .-.+.. .+. .....+++++|||||.. .+ ...|+.. ++..+..+...
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~i~lSAT~~~--------~~---~~~l~~~~~~~~~~~~v~g~---- 215 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQ-LIR-FFECRRKFVFLSATPDP--------AL---ILRLQNAKQAGVKIAPIDGE---- 215 (357)
T ss_pred cccccCcccchhhhhhhHHHH-HHH-hhhcCCcEEEEecCCCH--------HH---HHHHHhccccCceeeeecCc----
Confidence 99998753211111 000110 000 01123799999999853 11 2223333 22222211000
Q ss_pred ccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000607 228 NFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKA 307 (1396)
Q Consensus 228 ~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~ 307 (1396)
.+.+. +.| ++.. . ....++.
T Consensus 216 ---------~~~~~--~~~-~~~~----~-----------~~~~~~~--------------------------------- 235 (357)
T TIGR03158 216 ---------KYQFP--DNP-ELEA----D-----------NKTQSFR--------------------------------- 235 (357)
T ss_pred ---------ccccC--CCh-hhhc----c-----------ccccccc---------------------------------
Confidence 00000 000 0000 0 0000000
Q ss_pred HHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-hcCCC
Q 000607 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-YRGVE 386 (1396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~~~~~ 386 (1396)
..+...+.. . .. ........+..+.+.+.+ +...+
T Consensus 236 -~~~~~i~~~-------------------------------------~----~~--~~~~~~~~l~~l~~~i~~~~~~~~ 271 (357)
T TIGR03158 236 -PVLPPVELE-------------------------------------L----IP--APDFKEEELSELAEEVIERFRQLP 271 (357)
T ss_pred -eeccceEEE-------------------------------------E----Ee--CCchhHHHHHHHHHHHHHHHhccC
Confidence 000000000 0 00 000001112222222222 22235
Q ss_pred CeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCc
Q 000607 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQS 466 (1396)
Q Consensus 387 ~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~ 466 (1396)
+.++||||+++..++.++..|++.. .++.+..+||. |++.+|.+ .++..+||||+++++|||+|.
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~---~~~~~~~l~g~------~~~~~R~~------~~~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQG---LGDDIGRITGF------APKKDRER------AMQFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhC---CCceEEeeecC------CCHHHHHH------hccCCEEEEecHHhcccCCCC
Confidence 6799999999999999999999641 14577888887 47666654 357899999999999999998
Q ss_pred ccEEEEeCCCCcHHHHHHhhhccc
Q 000607 467 CNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 467 ~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
. .|| ++ |.+..+|+||.||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 6 666 66 889999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=268.05 Aligned_cols=316 Identities=17% Similarity=0.224 Sum_probs=223.9
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-|+-|.++++.++++ |+++.||||.||++++.+... .. .| .+|||.|-.+|...|.+.++.. |+++..+.
T Consensus 18 FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAl--l~-----~G-~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ln 88 (590)
T COG0514 18 FRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL--LL-----EG-LTLVVSPLISLMKDQVDQLEAA-GIRAAYLN 88 (590)
T ss_pred cCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHH--hc-----CC-CEEEECchHHHHHHHHHHHHHc-Cceeehhh
Confidence 588999999999998 899999999999999985433 21 23 6999999999999999999986 58888777
Q ss_pred CCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-C----cHHHHHHHHHHhhcc
Q 000607 101 GDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-H----QYACIMTEFYHRLLE 174 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~----~~~~im~~f~~~~~~ 174 (1396)
+..+.+.|.. .|.... ...+++..+|+.|.+.-....+..-.++++++||||++... | .|.++- .+..
T Consensus 89 S~l~~~e~~~-v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg-~l~~---- 162 (590)
T COG0514 89 STLSREERQQ-VLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG-RLRA---- 162 (590)
T ss_pred cccCHHHHHH-HHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHH-HHHh----
Confidence 7655543322 233332 24899999999998654334455668999999999999954 2 344432 2221
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.-+.+.+++||||-.. .+..+ +.+.|+-.-. ......++. |+-.+. ..
T Consensus 163 --~~~~~p~~AlTATA~~--------~v~~D---I~~~L~l~~~---------------~~~~~sfdR---pNi~~~-v~ 210 (590)
T COG0514 163 --GLPNPPVLALTATATP--------RVRDD---IREQLGLQDA---------------NIFRGSFDR---PNLALK-VV 210 (590)
T ss_pred --hCCCCCEEEEeCCCCh--------HHHHH---HHHHhcCCCc---------------ceEEecCCC---chhhhh-hh
Confidence 1125679999888643 22222 2233322110 000000111 100000 00
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.. .
T Consensus 211 ~~--------------------------------------------------------------------~--------- 213 (590)
T COG0514 211 EK--------------------------------------------------------------------G--------- 213 (590)
T ss_pred hc--------------------------------------------------------------------c---------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
....++..+.+ ........+||||.+|..++.+++.|.+
T Consensus 214 --------------------------------~~~~q~~fi~~----~~~~~~~~GIIYc~sRk~~E~ia~~L~~----- 252 (590)
T COG0514 214 --------------------------------EPSDQLAFLAT----VLPQLSKSGIIYCLTRKKVEELAEWLRK----- 252 (590)
T ss_pred --------------------------------cHHHHHHHHHh----hccccCCCeEEEEeeHHhHHHHHHHHHH-----
Confidence 00011111111 0123566799999999999999999996
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
.|+++...||. |+..+|..+.++|..+++.|+|||.+.+.|||-|++..|||||+|.|..+|.|-.|||||.|
T Consensus 253 ~g~~a~~YHaG------l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 253 NGISAGAYHAG------LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred CCCceEEecCC------CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 48999999997 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CcEEEEEecCCcchH
Q 000607 494 -SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~ 508 (1396)
+.+++++..+|....
T Consensus 327 ~a~aill~~~~D~~~~ 342 (590)
T COG0514 327 PAEAILLYSPEDIRWQ 342 (590)
T ss_pred cceEEEeeccccHHHH
Confidence 688999987765533
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=288.46 Aligned_cols=304 Identities=17% Similarity=0.118 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCe----EEEE
Q 000607 25 YQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLK----VGKY 99 (1396)
Q Consensus 25 yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~----v~~~ 99 (1396)
+-.++++.+.++ ++|+.++||||||.++...+... . ..+.++++++||+.++.|.++.+.+..+.. |+..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~---~--~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDA---P--GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHh---h--ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 444566666554 79999999999999988755432 1 134579999999999999999997666543 4433
Q ss_pred eCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccc-ccCCCcHHHHHHHHHHhhccCCCC
Q 000607 100 WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH-ARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
.+..+ ....+.+|+|+|+++|++.+.+. ..++++++|||||+|. ..+..---.++..... ...
T Consensus 81 vr~~~----------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~-----~lr 144 (819)
T TIGR01970 81 VRGEN----------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQS-----SLR 144 (819)
T ss_pred Ecccc----------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHH-----hcC
Confidence 33211 11235799999999999988764 5689999999999995 4432111111222221 112
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADEL 257 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l 257 (1396)
...++++||||+... .+...++ +.+...... ..|. ...|.... .. .
T Consensus 145 ~dlqlIlmSATl~~~--------------~l~~~l~~~~vI~~~gr-------~~pV--e~~y~~~~--~~--~------ 191 (819)
T TIGR01970 145 EDLKILAMSATLDGE--------------RLSSLLPDAPVVESEGR-------SFPV--EIRYLPLR--GD--Q------ 191 (819)
T ss_pred CCceEEEEeCCCCHH--------------HHHHHcCCCcEEEecCc-------ceee--eeEEeecc--hh--h------
Confidence 346899999998431 1233332 222211000 0010 01111000 00 0
Q ss_pred HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHH
Q 000607 258 AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGS 337 (1396)
Q Consensus 258 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (1396)
.+.
T Consensus 192 -----------------------------------------------------------------------------~~~ 194 (819)
T TIGR01970 192 -----------------------------------------------------------------------------RLE 194 (819)
T ss_pred -----------------------------------------------------------------------------hHH
Confidence 000
Q ss_pred HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCc
Q 000607 338 DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTW 417 (1396)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~ 417 (1396)
......+..++.. ...++|||++++..+..++..|++... .++
T Consensus 195 -------------------------------~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~--~~~ 237 (819)
T TIGR01970 195 -------------------------------DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD--SDV 237 (819)
T ss_pred -------------------------------HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC--CCc
Confidence 0000112222222 246799999999999999999986321 368
Q ss_pred eeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc------------------H
Q 000607 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT------------------V 479 (1396)
Q Consensus 418 ~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s------------------~ 479 (1396)
.+..+||. |++.+|.++++.|++|+.+|||||+++|+|||||++++||+++.+.. .
T Consensus 238 ~v~pLHg~------L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 311 (819)
T TIGR01970 238 LICPLYGE------LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQ 311 (819)
T ss_pred EEEEecCC------CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECH
Confidence 88999998 79999999999999999999999999999999999999999998753 3
Q ss_pred HHHHHhhhcccCCC-CcEEEEEec
Q 000607 480 CSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 480 ~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
.+|+||+|||||.+ |.|+.|+++
T Consensus 312 asa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 312 ASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred HHHHhhhhhcCCCCCCEEEEeCCH
Confidence 46999999999975 788888863
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=254.55 Aligned_cols=318 Identities=20% Similarity=0.193 Sum_probs=226.0
Q ss_pred cccchHHHHHHHHHHhc-C-CEEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---c
Q 000607 19 LPFARNYQLEALENALK-Q-NTIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-~-n~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
...+.|.|.-+++..+= | |.+|+.+|+||||+++-+ -|..++. .+++.+||||.++|++|-++.|+.- +
T Consensus 214 ~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----GGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred cceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----CCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 34588999999988764 4 899999999999999987 3554432 5788999999999999999999853 5
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---CcHHHHHHHHH
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQYACIMTEFY 169 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~f~ 169 (1396)
++++.+-.|...........-.....++||||+||+-+.-+|+.+ -.+.++..+|+||.|.+.+. |.-...+....
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 778877777644433222122233347999999999998888877 67899999999999998863 22222222221
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
. .-+..++++||||..+.. +|...|+++..-. ...|-|-++.+.+....
T Consensus 368 ~------l~~~AQ~i~LSATVgNp~-------------elA~~l~a~lV~y-------~~RPVplErHlvf~~~e----- 416 (830)
T COG1202 368 Y------LFPGAQFIYLSATVGNPE-------------ELAKKLGAKLVLY-------DERPVPLERHLVFARNE----- 416 (830)
T ss_pred H------hCCCCeEEEEEeecCChH-------------HHHHHhCCeeEee-------cCCCCChhHeeeeecCc-----
Confidence 1 123468999999997743 4556666654432 11122222222222100
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 417 -------------------------------------------------------------------------------- 416 (830)
T COG1202 417 -------------------------------------------------------------------------------- 416 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-h----cCCCCeeEEEEechHHHHHHHH
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-Y----RGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~----~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
+.|...+..+.+. | ...-..++|||+++|..+..|+
T Consensus 417 ---------------------------------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA 457 (830)
T COG1202 417 ---------------------------------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELA 457 (830)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHH
Confidence 1111111111111 0 0112467999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE---Ee-CCCCcHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI---MF-DPSRTVC 480 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI---~f-D~p~s~~ 480 (1396)
..|.. +|++....|+. |+..+|+.+...|.++++.++|+|.+++.|+|+|+-.+|. -. .-..|+.
T Consensus 458 ~~L~~-----kG~~a~pYHaG------L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~ 526 (830)
T COG1202 458 DALTG-----KGLKAAPYHAG------LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVR 526 (830)
T ss_pred HHhhc-----CCcccccccCC------CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHH
Confidence 99996 58998888876 7999999999999999999999999999999999866553 12 2355899
Q ss_pred HHHHhhhcccCCC----CcEEEEEecC
Q 000607 481 SFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 481 ~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
.|.|+.|||||.+ +++++|++.|
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999987 7899999877
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=266.29 Aligned_cols=317 Identities=20% Similarity=0.290 Sum_probs=213.7
Q ss_pred cccCCCcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 13 EVSADTLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 13 ~~~~~~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
.......+.+...|+.++..+... |-++.+|.|||||.+|++.+....+ .|..+..+|||--|+.|.+
T Consensus 254 ~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----~G~Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 254 KFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----AGYQAALMAPTEILAEQHY 328 (677)
T ss_pred HHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----cCCeeEEeccHHHHHHHHH
Confidence 334445567999999999999862 6899999999999999987765544 6788999999999999999
Q ss_pred HHHHHhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH
Q 000607 86 EAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA 162 (1396)
Q Consensus 86 ~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~ 162 (1396)
+.+.+++ +++|..++|.+.........-.-.-...+|+|+|...+.+ .+.+.++.|+|+||=|++.-.
T Consensus 329 ~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHRFGV~---- 399 (677)
T COG1200 329 ESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHRFGVH---- 399 (677)
T ss_pred HHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccccccHH----
Confidence 9999875 7899999998755432222222222369999999986654 455889999999999999753
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~ 242 (1396)
++.. +++.....|++|.|||||+...- .-...... +.+-+.. .|.....+..+-.
T Consensus 400 ---QR~~---L~~KG~~~Ph~LvMTATPIPRTL--------------Alt~fgDl----dvS~IdE-lP~GRkpI~T~~i 454 (677)
T COG1200 400 ---QRLA---LREKGEQNPHVLVMTATPIPRTL--------------ALTAFGDL----DVSIIDE-LPPGRKPITTVVI 454 (677)
T ss_pred ---HHHH---HHHhCCCCCcEEEEeCCCchHHH--------------HHHHhccc----cchhhcc-CCCCCCceEEEEe
Confidence 2221 11122227999999999987531 11111000 1111111 1111111110000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh
Q 000607 243 DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE 322 (1396)
Q Consensus 243 ~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~ 322 (1396)
+.+
T Consensus 455 ---~~~-------------------------------------------------------------------------- 457 (677)
T COG1200 455 ---PHE-------------------------------------------------------------------------- 457 (677)
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred hcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH-----
Q 000607 323 QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV----- 397 (1396)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r----- 397 (1396)
+...+++.+..- -.++.++.|-|+-+
T Consensus 458 ------------------------------------------------~~~~v~e~i~~e-i~~GrQaY~VcPLIeESE~ 488 (677)
T COG1200 458 ------------------------------------------------RRPEVYERIREE-IAKGRQAYVVCPLIEESEK 488 (677)
T ss_pred ------------------------------------------------cHHHHHHHHHHH-HHcCCEEEEEecccccccc
Confidence 000000000000 01233444444322
Q ss_pred ---HHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeC
Q 000607 398 ---ITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474 (1396)
Q Consensus 398 ---~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD 474 (1396)
..|..++..|+... .+++++.+||. |+..+..+++++|++|+++|||||.|.|.|||+|+++++|..|
T Consensus 489 l~l~~a~~~~~~L~~~~---~~~~vgL~HGr------m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~ 559 (677)
T COG1200 489 LELQAAEELYEELKSFL---PELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIEN 559 (677)
T ss_pred chhhhHHHHHHHHHHHc---ccceeEEEecC------CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEec
Confidence 35566777777542 46889999998 7999999999999999999999999999999999999999888
Q ss_pred CCC-cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 475 PSR-TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 475 ~p~-s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.-. -..+.-|-|||+||.+ |.|+++....
T Consensus 560 AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 560 AERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred hhhhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 765 4789999999999977 5666666543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=285.41 Aligned_cols=305 Identities=19% Similarity=0.153 Sum_probs=200.3
Q ss_pred HHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC----CeEEE
Q 000607 24 NYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD----LKVGK 98 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~----~~v~~ 98 (1396)
.+-.++++.+.++ ++|+.++||||||.++.+.+.. .. ..+.++++++||+.++.|.++.+.+..+ ..|+.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~---~~--~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ---HG--GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH---cC--CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 3444566666554 7999999999999998764432 11 1234799999999999999999876654 45554
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
..+.... ...+.+|+|+|+++|++.+... ..++++++|||||+|...-+.. ++..|.....+ ...
T Consensus 83 ~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~D---l~L~ll~~i~~-~lr 147 (812)
T PRK11664 83 RMRAESK----------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQAD---LALALLLDVQQ-GLR 147 (812)
T ss_pred EecCccc----------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccc---hHHHHHHHHHH-hCC
Confidence 4443211 1124689999999999988764 5789999999999997321111 11122211111 112
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADEL 257 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l 257 (1396)
...++++||||+... .+...+. ..+...... ..|. ...|... +.. .
T Consensus 148 ~~lqlilmSATl~~~--------------~l~~~~~~~~~I~~~gr-------~~pV--~~~y~~~--~~~--~------ 194 (812)
T PRK11664 148 DDLKLLIMSATLDND--------------RLQQLLPDAPVIVSEGR-------SFPV--ERRYQPL--PAH--Q------ 194 (812)
T ss_pred ccceEEEEecCCCHH--------------HHHHhcCCCCEEEecCc-------cccc--eEEeccC--chh--h------
Confidence 346899999998421 1233332 111111000 0010 0011100 000 0
Q ss_pred HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHH
Q 000607 258 AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGS 337 (1396)
Q Consensus 258 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (1396)
++
T Consensus 195 -----------------------------------------------------------------------------~~- 196 (812)
T PRK11664 195 -----------------------------------------------------------------------------RF- 196 (812)
T ss_pred -----------------------------------------------------------------------------hH-
Confidence 00
Q ss_pred HHHHHHHHhccCCCccccCCCCcccCCCCCccHHH-HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 338 DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI-VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv-~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
...+ ..+.+++.. ....+|||++++..+..+++.|++..+ .+
T Consensus 197 -------------------------------~~~v~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~~--~~ 239 (812)
T PRK11664 197 -------------------------------DEAVARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRVA--SD 239 (812)
T ss_pred -------------------------------HHHHHHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhcc--CC
Confidence 0000 011122221 356899999999999999999986322 26
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc------------------
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT------------------ 478 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s------------------ 478 (1396)
+.+..+||. |++.+|.++++.|++|+.+|||||+++|+|||||++++||+++.+..
T Consensus 240 ~~v~~Lhg~------l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 313 (812)
T PRK11664 240 VLLCPLYGA------LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRIS 313 (812)
T ss_pred ceEEEeeCC------CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeec
Confidence 788899997 69999999999999999999999999999999999999999777653
Q ss_pred HHHHHHhhhcccCCC-CcEEEEEec
Q 000607 479 VCSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
..+|+||.|||||.+ |.|+.|+++
T Consensus 314 kasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 314 QASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred hhhhhhhccccCCCCCcEEEEecCH
Confidence 358999999999976 788888763
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=255.78 Aligned_cols=414 Identities=15% Similarity=0.118 Sum_probs=260.0
Q ss_pred cchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+.+||++.+++..+ ...|+.+++|.|||.+.+..+..+.+.-+ --+.+|||||. .++.||..++..+. .+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~paLIVCP~-Tii~qW~~E~~~w~p~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTKPALIVCPA-TIIHQWMKEFQTWWPPF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccCceEEEccH-HHHHHHHHHHHHhCcce
Confidence 379999999998876 25999999999999999988887755322 12669999999 88899999999876 68
Q ss_pred eEEEEeCCCCcc----cCCccchHHhh-----ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH-
Q 000607 95 KVGKYWGDMGVD----FWDGATWKEEM-----SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI- 164 (1396)
Q Consensus 95 ~v~~~~G~~~~~----~~~~~~~~~~~-----~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i- 164 (1396)
+|.+++|..... ..+...|+..+ ....|+++|+..|.-. ...+.-..|+++|+||+|++.+.++-..+
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~isla 359 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISLA 359 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHHH
Confidence 999998875421 11122344433 3678999999988632 22344457999999999999986543333
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
++. -+.++.++||+||+.++ +.+|.++++-..-. ..+..-+.+....|....-+-...
T Consensus 360 ckk----------i~T~~RiILSGTPiQNn-----------L~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs 418 (923)
T KOG0387|consen 360 CKK----------IRTVHRIILSGTPIQNN-----------LTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANAS 418 (923)
T ss_pred HHh----------ccccceEEeeCccccch-----------HHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCC
Confidence 222 23467899999999875 66676666542211 112222322222222222111111
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhh
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQ 323 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 323 (1396)
+....+...-...|.++..+|...-...+... ...........+++
T Consensus 419 ~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----------------------------------~~Lp~K~E~VlfC~ 464 (923)
T KOG0387|consen 419 PRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----------------------------------LKLPKKEEIVLFCR 464 (923)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----------------------------------ccCCCccceEEEEe
Confidence 11111111122233344444421110000000 00000111112222
Q ss_pred cccchHHHHHHHHH--HH-------------HHHHHHhccCCCccccCC--CCcccC---CCCCccHHHHHHHHHHhhhc
Q 000607 324 LDGFGETIIKKFGS--DA-------------SQALVTYVPSGAEWSIGD--DSKFNL---DSGLLTEKIVCLIESLLEYR 383 (1396)
Q Consensus 324 ~~~~~~~~~~~~l~--~~-------------~~~l~~~~~~~~~~~~~~--~~~~~~---~~~~~s~Kv~~L~~~L~~~~ 383 (1396)
+.........+|++ ++ ...++..|..... .... ...+.. .....+-|++.+..+|..+.
T Consensus 465 LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl-l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~ 543 (923)
T KOG0387|consen 465 LTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL-LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK 543 (923)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc-ccCcccccccCCCcCCChhhcchHHHHHHHHHHHh
Confidence 22222222222221 11 1122222221110 0010 111111 12234789999999999975
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe--eEEEEecccccc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV--NVIVATSILEEG 461 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~--nvLVaTsvleeG 461 (1396)
..+.++|+|.+++.+...|...|... .++.+..|.|.+ +...|+..+++|.+++. -.|++|.|++-|
T Consensus 544 -kqg~rvllFsqs~~mLdilE~fL~~~----~~ysylRmDGtT------~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLG 612 (923)
T KOG0387|consen 544 -KQGDRVLLFSQSRQMLDILESFLRRA----KGYSYLRMDGTT------PAALRQKLVDRFNEDESIFVFLLTTRVGGLG 612 (923)
T ss_pred -hCCCEEEEehhHHHHHHHHHHHHHhc----CCceEEEecCCC------ccchhhHHHHhhcCCCceEEEEEEecccccc
Confidence 46669999999999999999999964 689999999986 77899999999998773 478899999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcc
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDST 506 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~ 506 (1396)
+|+..+|-||.||+.|||..-.|++-||-|.|+ .++-|++.+..+
T Consensus 613 lNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 613 LNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 999999999999999999999999999999996 356677766443
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=255.97 Aligned_cols=329 Identities=17% Similarity=0.146 Sum_probs=239.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCe
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~ 95 (1396)
..|.|.|+..++-++++ +++..+-||||||.++++.+.+-+.... ..+-+++++.||++|+.|..+.++. .++++
T Consensus 42 ~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkdlgrgt~lr 120 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKDLGRGTKLR 120 (529)
T ss_pred CCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHHhccccchh
Confidence 34899999999999998 7889999999999999985543322211 3567899999999999998888775 45788
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
...++|++... ++|.....+.|||++||++++...-.-.+.++.+.++||||++++... -|+.-+.+.. ..
T Consensus 121 ~s~~~ggD~~e----eqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l----~r 191 (529)
T KOG0337|consen 121 QSLLVGGDSIE----EQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEIL----SR 191 (529)
T ss_pred hhhhcccchHH----HHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHH----Hh
Confidence 88788865443 678888889999999999998776666688999999999999999863 1222222222 22
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc-cccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN-FIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~-~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.+..+ +.+.+|||..+.- . ++.+ ....|....+ +. ... +.
T Consensus 192 l~~~~-QTllfSatlp~~l------------v-----------------~fakaGl~~p~lVRl--dv---etk----is 232 (529)
T KOG0337|consen 192 LPESR-QTLLFSATLPRDL------------V-----------------DFAKAGLVPPVLVRL--DV---ETK----IS 232 (529)
T ss_pred CCCcc-eEEEEeccCchhh------------H-----------------HHHHccCCCCceEEe--eh---hhh----cc
Confidence 33333 8999999986521 0 0000 0001111000 00 000 00
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
..+
T Consensus 233 e~l----------------------------------------------------------------------------- 235 (529)
T KOG0337|consen 233 ELL----------------------------------------------------------------------------- 235 (529)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
+-.. . ......|...|+.++.... .+.++||||.++..++.+..+|...
T Consensus 236 ---------k~~f------~----------~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~---- 284 (529)
T KOG0337|consen 236 ---------KVRF------F----------RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDF---- 284 (529)
T ss_pred ---------hhhe------e----------eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhc----
Confidence 0000 0 0001568888888887753 4678999999999999999999974
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
|+.+..+.|+ |.+..|...+.+|+.++.++||.|+++.+|+|||-.+.||+||.|....-|+||.||+.|+|
T Consensus 285 -g~~~s~iyss------lD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 285 -GGEGSDIYSS------LDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred -CCCccccccc------cChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 7777777776 69999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CcEEEEEecCCcchHHHHH
Q 000607 494 -SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~~~i~ 512 (1396)
+.+|.+|...+.-..-++.
T Consensus 358 tg~aYs~V~~~~~~yl~DL~ 377 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDLQ 377 (529)
T ss_pred cceEEEEEecccchhhhhhh
Confidence 4678888766544443333
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=258.49 Aligned_cols=436 Identities=16% Similarity=0.146 Sum_probs=252.3
Q ss_pred ccchHHHHHHHHHHh--c--C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENAL--K--Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP----SPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l--~--~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~----~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+|.||+|.+.+.- + + +.|+|+++|.|||++++..+..=....+.. .....+|+||. .|+..|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 458999999998654 2 2 899999999999999987544211111111 33448999999 999999999999
Q ss_pred hcCC-eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 91 HTDL-KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 91 ~~~~-~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++ +|..|.|.-. .+...+...++++|+|++|+++.+.+. ++.-.+|+++|+||.|-+++... .+..+.
T Consensus 1053 f~pfL~v~~yvg~p~----~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~kt---kl~kav 1123 (1549)
T KOG0392|consen 1053 FFPFLKVLQYVGPPA----ERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKT---KLTKAV 1123 (1549)
T ss_pred hcchhhhhhhcCChH----HHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHH---HHHHHH
Confidence 9874 8888888632 223456667789999999999998766 55556899999999999987421 111222
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCCCCchh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYDEIPHA 248 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~~~~~~ 248 (1396)
.. -...+.+.||+||+.++ +.+|.++++--.-. ...+.++..-..+|......- .....
T Consensus 1124 kq------L~a~hRLILSGTPIQNn-----------vleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~---K~Ssk 1183 (1549)
T KOG0392|consen 1124 KQ------LRANHRLILSGTPIQNN-----------VLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDP---KSSSK 1183 (1549)
T ss_pred HH------HhhcceEEeeCCCcccC-----------HHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCc---ccchh
Confidence 11 12346889999999976 33344433321111 011222222222222111100 01111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh-h------chhhHH-------HHHHHHHHHH-HHHHHH--------HHHHhHH--HHH
Q 000607 249 LYTHLADELAMIELKHTRSLEN-L------DLNEAQ-------AELIRKKVSK-INSTLL--------YCLSELG--VWL 303 (1396)
Q Consensus 249 ~~~~l~~~l~~l~~~~~~~l~~-~------~~~~~~-------~~~~~~~~~~-~~~~~~--------~~~~~lg--~~~ 303 (1396)
-.+.-...++.++++...++-+ + ++.+.. +...++++-. +..... .....+| .-.
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~H 1263 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTH 1263 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHH
Confidence 1111223445555443332221 0 000000 0001111110 000000 0011111 111
Q ss_pred HHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhc
Q 000607 304 ALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYR 383 (1396)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~ 383 (1396)
...+.+|+.+..++..+.-.-....-..+...+...... +.+-..+||+.+|.++|.+++
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~--------------------LHdi~hspKl~AL~qLL~eCG 1323 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSS--------------------LHDIQHSPKLSALKQLLSECG 1323 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhh--------------------HHHhhhchhHHHHHHHHHHhC
Confidence 112233332222221110000000000011111111111 111123899999999999864
Q ss_pred CC-------------CCeeEEEEechHHHHHHHHHHHHh-hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-C
Q 000607 384 GV-------------EDIRCIIFVERVITAIVLQSLLSE-LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-L 448 (1396)
Q Consensus 384 ~~-------------~~~k~IIFv~~r~ta~~L~~~L~~-~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~ 448 (1396)
.. ...|++|||+-+.+.+.+.+-|-+ +. +.+..-.+.|+. ++.+|++++++|.++ .
T Consensus 1324 ig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m---psVtymRLDGSV------pp~~R~kiV~~FN~Dpt 1394 (1549)
T KOG0392|consen 1324 IGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM---PSVTYMRLDGSV------PPGDRQKIVERFNEDPT 1394 (1549)
T ss_pred CCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc---CceeEEEecCCC------CcHHHHHHHHHhcCCCc
Confidence 21 468999999999999999875553 32 234445677774 899999999999998 5
Q ss_pred eeEEE-EecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEEecCCcchHHHHHHHHH
Q 000607 449 VNVIV-ATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 449 ~nvLV-aTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
+.||+ +|-|++-|+|+..++.||+++..|||-.-.|.+.||+|.|++ ++-++++|. ..+++..+++
T Consensus 1395 IDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT--LEEKVMgLQk 1465 (1549)
T KOG0392|consen 1395 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT--LEEKVMGLQK 1465 (1549)
T ss_pred eeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc--HHHHHhhHHH
Confidence 77655 789999999999999999999999999999999999999973 556666663 3334444433
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=288.35 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=197.3
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|+++|.++++.++++ |+++++|||+|||..++.++..+. ..+++++||+||++|+.|+++.++.+. +.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-----~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-----KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 346999999999999998 899999999999975443333221 246789999999999999999999875 56
Q ss_pred eEEEEeCCCCcccCCc-cchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC-cHHHHHH--HH-
Q 000607 95 KVGKYWGDMGVDFWDG-ATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH-QYACIMT--EF- 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~-~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~--~f- 168 (1396)
.+..+.|+.+...... ..+.... ..++|+|+||+.|.+.+. .+...++++||+||||++.+.. ...+++. +|
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 6666776543221111 1222222 358999999999998876 4556679999999999998521 1111111 11
Q ss_pred -------HHhh-------------------ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccC
Q 000607 169 -------YHRL-------------------LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCAS 222 (1396)
Q Consensus 169 -------~~~~-------------------~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~ 222 (1396)
+... +........+++.+|||....... ...+...++ +.+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~---------~~l~~~ll~---~~v-- 296 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR---------VKLFRELLG---FEV-- 296 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH---------HHHhhccce---EEe--
Confidence 1000 000001134455666665321100 000000000 000
Q ss_pred hhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000607 223 ESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVW 302 (1396)
Q Consensus 223 ~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 302 (1396)
.. ..
T Consensus 297 ------------------~~---~~------------------------------------------------------- 300 (1176)
T PRK09401 297 ------------------GS---PV------------------------------------------------------- 300 (1176)
T ss_pred ------------------cC---cc-------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh
Q 000607 303 LALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY 382 (1396)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~ 382 (1396)
....++.+.... ...|...|.+++...
T Consensus 301 ---------------------------------------------------~~~rnI~~~yi~--~~~k~~~L~~ll~~l 327 (1176)
T PRK09401 301 ---------------------------------------------------FYLRNIVDSYIV--DEDSVEKLVELVKRL 327 (1176)
T ss_pred ---------------------------------------------------cccCCceEEEEE--cccHHHHHHHHHHhc
Confidence 000000000000 014566677777654
Q ss_pred cCCCCeeEEEEechHHH---HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEE----e
Q 000607 383 RGVEDIRCIIFVERVIT---AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVA----T 455 (1396)
Q Consensus 383 ~~~~~~k~IIFv~~r~t---a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVa----T 455 (1396)
+..+||||+++.. ++.++..|+. .|+++..+||+ | .+.+++|++|+++|||| |
T Consensus 328 ----~~~~LIFv~t~~~~~~ae~l~~~L~~-----~gi~v~~~hg~------l-----~~~l~~F~~G~~~VLVatas~t 387 (1176)
T PRK09401 328 ----GDGGLIFVPSDKGKEYAEELAEYLED-----LGINAELAISG------F-----ERKFEKFEEGEVDVLVGVASYY 387 (1176)
T ss_pred ----CCCEEEEEecccChHHHHHHHHHHHH-----CCCcEEEEeCc------H-----HHHHHHHHCCCCCEEEEecCCC
Confidence 2479999999877 9999999997 48999999997 4 34569999999999999 6
Q ss_pred cccccccCCCc-ccEEEEeCCCC------cHHHHHHhhhcccC
Q 000607 456 SILEEGLDVQS-CNLVIMFDPSR------TVCSFIQSRGRARM 491 (1396)
Q Consensus 456 svleeGiDIp~-~~lVI~fD~p~------s~~~yiQr~GRA~R 491 (1396)
+++++|||+|+ +.+||+||.|. ....|.+|.||+-+
T Consensus 388 dv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 388 GVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999999999 89999999999 66789999999853
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-27 Score=304.32 Aligned_cols=606 Identities=21% Similarity=0.165 Sum_probs=390.4
Q ss_pred HHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCC
Q 000607 25 YQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYL-LRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDM 103 (1396)
Q Consensus 25 yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~-~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~ 103 (1396)
+|..-.+.+..-+++....++-+++++........... +.....--.+|.|+.+..+.+..+.++..+-..+..++|..
T Consensus 248 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 327 (1606)
T KOG0701|consen 248 LRDSKHEYIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGAS 327 (1606)
T ss_pred hhhcchhhhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccc
Confidence 33333444444589999999999999986543332211 11223344688999999999999999998877888899999
Q ss_pred CcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeE
Q 000607 104 GVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRI 183 (1396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~i 183 (1396)
+...|+...|...+....|+..+.+..++.|.+..+.+..++....++||+....+.|+..+..+.+.. ......-+
T Consensus 328 ~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~---~~~~~~~i 404 (1606)
T KOG0701|consen 328 GANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRAR---AADSYLVI 404 (1606)
T ss_pred cCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccc---cchhhHHH
Confidence 999999999999999999999999999999999888999999999999999999999999999988532 22334568
Q ss_pred EEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH-HHHHHHHHHH-
Q 000607 184 FGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT-HLADELAMIE- 261 (1396)
Q Consensus 184 lgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~-~l~~~l~~l~- 261 (1396)
+|+|..++.-+.............+|.....+.+..+..+.++....+.+....+.++. |..... .....+....
T Consensus 405 ~~~t~~~~~~~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~---p~~~~~~~~~~~l~~~~~ 481 (1606)
T KOG0701|consen 405 LGETLSAVSLKNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNS---PLKMCIVGLCLKLHKIGE 481 (1606)
T ss_pred HHhhhhhhhhcChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCc---hHHHHHHHhHHHHHHhhh
Confidence 89998887755321111111223455566666666665666666777766666665554 211111 0111111110
Q ss_pred -HHH--------Hhhhhhhchhh--H----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc---ccc
Q 000607 262 -LKH--------TRSLENLDLNE--A----------QAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCY---ESD 317 (1396)
Q Consensus 262 -~~~--------~~~l~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~---~~~ 317 (1396)
+.. ...+...+... . ........++.+......+....|.||.....+..... +..
T Consensus 482 ~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~ 561 (1606)
T KOG0701|consen 482 LDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER 561 (1606)
T ss_pred hhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc
Confidence 000 00000000000 0 00001111223333333444455555554333221000 000
Q ss_pred hh-------------hhhhc-----------------ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCc----c-c
Q 000607 318 FF-------------AWEQL-----------------DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK----F-N 362 (1396)
Q Consensus 318 ~~-------------~~~~~-----------------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~----~-~ 362 (1396)
.. ..+.+ ..........+.......- .. ..+ ......+. . .
T Consensus 562 n~~~r~~~~~~~~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~--~~-~~~-~~f~~~~~~~v~~~~ 637 (1606)
T KOG0701|consen 562 NFERRKLYPPEDLTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSE--QL-DEI-QEFLNYIFTEVLRLA 637 (1606)
T ss_pred ccccccccCchhhhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchh--hc-cCc-chhcccchhhhhhhh
Confidence 00 00000 0000011111111110000 00 000 00000000 0 0
Q ss_pred CCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCce-eeEEecCCCCcCCCCHHHHHHHH
Q 000607 363 LDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWK-TKYIAGNNSGIQCQSRKKQNEIV 441 (1396)
Q Consensus 363 ~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~-~~~l~G~~~~~~~ms~~~r~~~l 441 (1396)
-......++...|+..|.-+....+.++++|+...-++-.+-..+-...+. ..++ ..++.+..+ .+|....|....
T Consensus 638 ~~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~-~~~~~~~~f~~~~~--~~~~~~~rn~~~ 714 (1606)
T KOG0701|consen 638 KINLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSK-DEVRKAKYFDGEDS--QDAVGMYRNDDQ 714 (1606)
T ss_pred ccccccCCchhhHHHHhcccccccccchhhhHHHHHHHHhCcccccCCCCh-hhhhhhhhcccccc--hhhhhhhhcccc
Confidence 012334678888888888876778889999998877776655544433222 3344 333333322 223344788888
Q ss_pred HHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHHH
Q 000607 442 EEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKM 521 (1396)
Q Consensus 442 ~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~m 521 (1396)
..|+.+++.++++|+...+|.|+--|+.|+++|.-.+..++.|++||++..++.+.++++.++......+-.....++.|
T Consensus 715 ~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~ 794 (1606)
T KOG0701|consen 715 PQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERL 794 (1606)
T ss_pred cceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999988766655555555666677
Q ss_pred HHHHHhccCCCCCCCC-----CCCCCCcceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEEEEEc
Q 000607 522 RKEVLSHASLPCSPLN-----NHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYL 596 (1396)
Q Consensus 522 ~~~~~~~~~~~~~~~~-----~~~~~~~~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~~v~L 596 (1396)
+++.+.......-... ........|++..||+.++..+|..+|.+||+++++..|...++...-+.+.|.|.+.+
T Consensus 795 ~~es~~~~~~~h~~~~s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~ 874 (1606)
T KOG0701|consen 795 KDESLEHSLIIHPALASLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLAL 874 (1606)
T ss_pred hHHHhhccCCCCcCcchhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecc
Confidence 7766554322211111 11234557899999999999999999999999999988887776655466789999999
Q ss_pred CCCCCCccc--cccCCHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccc
Q 000607 597 PNNCPIQTV--IAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVE 643 (1396)
Q Consensus 597 P~~~p~~~~--~~~~~~~~Ak~~aAf~a~~~L~~~g~ldd~L~P~~~~~ 643 (1396)
|..+|.+.. ......+.+++++++++|++||++|..+|++.|.....
T Consensus 875 ~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~ 923 (1606)
T KOG0701|consen 875 PKENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVA 923 (1606)
T ss_pred cCCCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCcccc
Confidence 999999876 77778999999999999999999999999999976544
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=257.52 Aligned_cols=412 Identities=17% Similarity=0.164 Sum_probs=224.1
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
.+||||.+++..+.-. +.|+.|+||+|||++|++++. .... .++.++|++|+..|+.|+++.+.. ++|++|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~--l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv 142 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLY--LNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTV 142 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHH--HHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcE
Confidence 3678888877765543 589999999999999998753 2222 345699999999999999998865 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhc------CccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLS------YFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~------~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.++++.....|.... .....+++|+++||+.| .+.|... ...+..+.++|+||||.+.-+
T Consensus 143 ~~~~~~s~~~~~~~~~-rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD----------- 210 (762)
T TIGR03714 143 SLGVVDDPDEEYDANE-KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD----------- 210 (762)
T ss_pred EEEECCCCccccCHHH-HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc-----------
Confidence 9887763333333222 22334799999999999 4544321 234578999999999988643
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeE-EeccC-----------hhhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKV-YTCAS-----------ESVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i-~~~~~-----------~~~l~~~~~~~~~~~ 237 (1396)
....| |.+|+.|.... +....+..+...|.... |.+.. .+.+.++..-+
T Consensus 211 -------eartp--liisg~~~~~~------~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~---- 271 (762)
T TIGR03714 211 -------SAQTP--LVISGAPRVQS------NLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID---- 271 (762)
T ss_pred -------cCcCC--eeeeCCCccch------HHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC----
Confidence 12345 34555543211 34445555555554321 21100 00000100000
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh-h------chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN-L------DLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAA 308 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~ 308 (1396)
-.|+... ......+...+.... .+-..++.. . .++.+.. ...+.+ .+-+.+.
T Consensus 272 ~l~~~~~--~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~--~gr~~~---------------~GLhQai 332 (762)
T TIGR03714 272 NLYSEEY--FELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLL--EGTKLQ---------------SGIHQAI 332 (762)
T ss_pred ccCChhh--HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCC--CCCCcc---------------hHHHHHH
Confidence 0011000 000000111110000 000000000 0 0000000 000000 0001111
Q ss_pred HHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccC---CCCCccHHHH
Q 000607 309 ETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNL---DSGLLTEKIV 373 (1396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~---~~~~~s~Kv~ 373 (1396)
+.-...+..........-..+.+.+.|- ......+.+.+.-+ ...++.+.+ .+. -......|..
T Consensus 333 eaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~-v~~IPt~kp~~r~d~~d~i~~~~~~K~~ 411 (762)
T TIGR03714 333 EAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS-VVKIPTNKPIIRIDYPDKIYATLPEKLM 411 (762)
T ss_pred HhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC-EEEcCCCCCeeeeeCCCeEEECHHHHHH
Confidence 1100000000000000000001111110 00111222222111 011111111 111 1123467899
Q ss_pred HHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEE
Q 000607 374 CLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIV 453 (1396)
Q Consensus 374 ~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLV 453 (1396)
++++.+.+. ...+.++||||+++..++.++..|.. .++++..+||. +.++++..+..+|+.| .|+|
T Consensus 412 ai~~~i~~~-~~~~~pvLIft~s~~~se~ls~~L~~-----~gi~~~~L~a~------~~~~E~~ii~~ag~~g--~VlI 477 (762)
T TIGR03714 412 ATLEDVKEY-HETGQPVLLITGSVEMSEIYSELLLR-----EGIPHNLLNAQ------NAAKEAQIIAEAGQKG--AVTV 477 (762)
T ss_pred HHHHHHHHH-hhCCCCEEEEECcHHHHHHHHHHHHH-----CCCCEEEecCC------ChHHHHHHHHHcCCCC--eEEE
Confidence 999888774 24678899999999999999999997 48999999997 4777777777767666 7999
Q ss_pred EecccccccCCC---------cccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 454 ATSILEEGLDVQ---------SCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 454 aTsvleeGiDIp---------~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
||+++++|+||| .+++|++|++|..... +||+||+||.| |..+.+++.+
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 999999999999 8999999999988766 99999999998 5667777644
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=258.10 Aligned_cols=409 Identities=18% Similarity=0.173 Sum_probs=226.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|+++|.-+.-...+|+ |+.|.||+|||++|++++...+ + .++.+.|++||..|+.|.++.++. ++|+++
T Consensus 77 ~~p~~vQl~~~~~l~~G~-Iaem~TGeGKTL~a~lp~~l~a--l---~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v 150 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGN-IAEMQTGEGKTLTATMPLYLNA--L---EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTV 150 (790)
T ss_pred CCCchHHHHhHHHHcCCc-eeeecCCCcchHHHHHHHHHHH--H---cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 457888888877666666 9999999999999998654221 1 467899999999999998888775 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhc------CccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLS------YFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~------~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.+.|+++.. .. .+....++|+++|++.| .|.|... ...+..+.++|+||||.+.=+
T Consensus 151 ~~i~g~~~~~----~~-r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD----------- 214 (790)
T PRK09200 151 GLNFSDIDDA----SE-KKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD----------- 214 (790)
T ss_pred EEEeCCCCcH----HH-HHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceec-----------
Confidence 9999986531 11 23345799999999888 3444332 134578999999999998732
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccC-----------hhhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCAS-----------ESVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~-----------~~~l~~~~~~~~~~~ 237 (1396)
....| |.+|+.+.... +....+..+...|... -|.... .+.+..+..-+
T Consensus 215 -------ea~tp--liisg~~~~~~------~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~---- 275 (790)
T PRK09200 215 -------EAQTP--LIISGKPRVQS------NLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID---- 275 (790)
T ss_pred -------cCCCc--eeeeCCCcccc------HHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc----
Confidence 12335 44555432211 3444454555544322 121100 00011110000
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh------h-chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN------L-DLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAA 308 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~ 308 (1396)
-.|+... ......+...+.... ..-..++.. . .++.+... ..+.+. +-+.+.
T Consensus 276 ~l~~~~~--~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~--gr~~s~---------------GlhQai 336 (790)
T PRK09200 276 NLYSLEH--QVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLP--GRKLQD---------------GLHQAI 336 (790)
T ss_pred cccChhh--hHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCC--CCccCh---------------HHHHHH
Confidence 0011000 000000111111000 000000000 0 00000000 000000 000000
Q ss_pred HHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccCC---CCCccHHHH
Q 000607 309 ETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNLD---SGLLTEKIV 373 (1396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~s~Kv~ 373 (1396)
+.-...+..........-....+.+.|- ......+.+.+.-+ ...++.+.+ .+.. ......|..
T Consensus 337 eaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~-v~~IPt~kp~~r~d~~~~i~~~~~~K~~ 415 (790)
T PRK09200 337 EAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME-VVQIPTNRPIIRIDYPDKVFVTLDEKYK 415 (790)
T ss_pred HHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc-EEECCCCCCcccccCCCeEEcCHHHHHH
Confidence 0000000000000000000001111110 00112222222111 011111111 1111 123367888
Q ss_pred HHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEE
Q 000607 374 CLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIV 453 (1396)
Q Consensus 374 ~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLV 453 (1396)
.|++.+... ...+.++||||+++..++.++..|.. .++++..+||.. .++++..+..+++.| +|+|
T Consensus 416 al~~~i~~~-~~~~~pvLIf~~t~~~se~l~~~L~~-----~gi~~~~L~~~~------~~~e~~~i~~ag~~g--~VlI 481 (790)
T PRK09200 416 AVIEEVKER-HETGRPVLIGTGSIEQSETFSKLLDE-----AGIPHNLLNAKN------AAKEAQIIAEAGQKG--AVTV 481 (790)
T ss_pred HHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCEEEecCCc------cHHHHHHHHHcCCCC--eEEE
Confidence 898888763 23578899999999999999999997 489999999973 677777777777766 7999
Q ss_pred EecccccccCC---Cccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 454 ATSILEEGLDV---QSCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 454 aTsvleeGiDI---p~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
||+++++|+|| |.+. +||+||.|.|.+.|+||+||+||.| |.++.+++.+
T Consensus 482 ATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 482 ATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred EccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 99999999999 6898 9999999999999999999999998 5667777644
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=266.00 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=115.0
Q ss_pred cccchHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 19 LPFARNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
...++++|.++++.+.+ +++++.++||||||.+++.++..... .+++++||+||++|+.|+.+.+++.++.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----~g~~vLvLvPt~~L~~Q~~~~l~~~fg~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----QGKQALVLVPEIALTPQMLARFRARFGA 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 44589999999999987 36999999999999999877765533 3678999999999999999999998899
Q ss_pred eEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---Cc-H-HHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQ-Y-ACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~-~~im~~f 168 (1396)
++..++|+.+... ....|..... ..+|+|+|++.+ +..+.++++||+||+|...-. .| | .+-+..+
T Consensus 217 ~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 217 PVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 9999999865431 2244665544 579999999765 355789999999999987632 12 1 1111111
Q ss_pred HHhhccCCCCCCCeEEEEeccCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
. . ......++++||||.
T Consensus 289 r-a-----~~~~~~~il~SATps 305 (679)
T PRK05580 289 R-A-----KLENIPVVLGSATPS 305 (679)
T ss_pred H-h-----hccCCCEEEEcCCCC
Confidence 1 1 122356888899994
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=243.70 Aligned_cols=134 Identities=28% Similarity=0.355 Sum_probs=116.6
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccc--cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcccc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQE--DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISN 1037 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~--~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n 1037 (1396)
.+|++.++|.|++. .++.+||||+|+.. ..||||||||||+||+++++.+||.+||+.+||+||.+|+.+|||
T Consensus 13 ~~le~~lgy~F~~~-----~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n 87 (235)
T PRK12371 13 SILEERTGHRFANK-----ERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNA 87 (235)
T ss_pred HHHHHHHCCCCCCH-----HHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCh
Confidence 46888999999886 89999999999875 359999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChh
Q 000607 1038 AALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGEN 1117 (1396)
Q Consensus 1038 ~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~ 1117 (1396)
.+|+++|.++||++||+ ..++... ..+ ....|.+||+|||+|||+|+|+|.+
T Consensus 88 ~~La~ia~~lgL~~~i~---------~~~~~~~-----------------~~~--~~~~~ilad~~EAliGAiylD~G~~ 139 (235)
T PRK12371 88 ETCAAIADEIGLHDLIR---------TGSDVKK-----------------LTG--KRLLNVRADVVEALIAAIYLDGGLE 139 (235)
T ss_pred HHHHHHHHHCCcHHHhc---------cCcchhh-----------------cCC--cccchHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998 3333200 001 1245899999999999999999999
Q ss_pred HHHHHHhhc
Q 000607 1118 VGLIFLDRI 1126 (1396)
Q Consensus 1118 ~a~~~~~~l 1126 (1396)
.|.+|+..+
T Consensus 140 ~a~~~i~~~ 148 (235)
T PRK12371 140 AARPFIQRY 148 (235)
T ss_pred HHHHHHHHH
Confidence 999998665
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=237.84 Aligned_cols=134 Identities=28% Similarity=0.396 Sum_probs=118.4
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccC----CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDF----HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~----~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..|.+.+++.|++. .++.+||||+|+.... |||||||||||||.++++.+||.+||+.+||.||.+|+.+|
T Consensus 9 ~~l~~~lg~~f~~~-----~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 9 EALEKKLGYTFKDK-----ELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56788899998886 8999999999998654 89999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
|+..|+.+|..+||..||+ ..+|.. .. .+. -.++.+||+|||+|||+|+|+|
T Consensus 84 ~~~~La~ia~~l~l~~~l~---------lg~ge~----------~~-------gg~--~~~silaD~~EAligAiylD~g 135 (235)
T COG0571 84 SEESLAEIARELGLGDYLR---------LGKGEE----------KS-------GGR--RRESILADAFEALIGAIYLDSG 135 (235)
T ss_pred HHHHHHHHHHHhCccchhh---------ccCChh----------hc-------CCC--CchhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999 565541 00 111 3688999999999999999999
Q ss_pred hhHHHHHHhhc
Q 000607 1116 ENVGLIFLDRI 1126 (1396)
Q Consensus 1116 ~~~a~~~~~~l 1126 (1396)
++.+.+|+..+
T Consensus 136 ~~~~~~~i~~l 146 (235)
T COG0571 136 LEAARKFILKL 146 (235)
T ss_pred hHHHHHHHHHH
Confidence 99999997543
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=255.29 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..|..++++.+.+. ...+..+||||+++..++.+++.|.+ .+++...++|. +.+|+..+.+|+.+.
T Consensus 388 ~~k~~ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~-----~gi~~~~Lna~--------q~~rEa~ii~~ag~~ 453 (745)
T TIGR00963 388 EEKWKAVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKE-----RGIPHNVLNAK--------NHEREAEIIAQAGRK 453 (745)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----cCCCeEEeeCC--------hHHHHHHHHHhcCCC
Confidence 46887887777654 25788999999999999999999997 48899999885 468899999999999
Q ss_pred eeEEEEecccccccCCCc-------ccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 449 VNVIVATSILEEGLDVQS-------CNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~-------~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.+|+|||+++++|+||+. ..+||+++.|.|.+.|.|++||+||.| |....+++.+
T Consensus 454 g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 454 GAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred ceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 999999999999999999 559999999999999999999999998 5677777644
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=250.63 Aligned_cols=407 Identities=16% Similarity=0.110 Sum_probs=228.1
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCe
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~ 95 (1396)
...|++.|..++..++.|+ |+.|.||+|||+++++++...+ -.++.++||+||+.|+.|.++.++.+ +|++
T Consensus 101 g~~p~~VQ~~~~~~ll~G~-Iae~~TGeGKTla~~lp~~~~a-----l~G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR-LAEMQTGEGKTLTATLPAGTAA-----LAGLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred CCCCChHHHHHHHHHhCCC-eeeeeCCCCcHHHHHHHHHHHh-----hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 3458999999999999999 9999999999999998665332 14678999999999999988888864 5899
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhcC-------------------------ccccceeEEEE
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLSY-------------------------FKLNMIKVLIL 149 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~~-------------------------~~l~~i~llI~ 149 (1396)
++.++|++.. ..+....+++|+++|..-|- |.|+... .-...+++.|+
T Consensus 175 v~~i~gg~~~------~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 175 VGCVVEDQSP------DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred EEEEeCCCCH------HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999998542 23444558999999987763 3333221 12355789999
Q ss_pred eccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccChhhhcc
Q 000607 150 DECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCASESVLSN 228 (1396)
Q Consensus 150 DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~~~~l~~ 228 (1396)
||++.+.=+ ....| |.+|+.+.. ... .+....+..+...|... -|.+.
T Consensus 249 DEvDSiLiD------------------eartp--liis~~~~~-~~~---~~~y~~~~~~~~~l~~~~~y~~d------- 297 (656)
T PRK12898 249 DEADSVLID------------------EARTP--LIISAPAKE-ADE---AEVYRQALELAAQLKEGEDYTID------- 297 (656)
T ss_pred ecccceeec------------------cCCCc--eEEECCCCC-Cch---hHHHHHHHHHHHhcCCCCceEEE-------
Confidence 999987632 12345 445553322 111 13444455555544432 22220
Q ss_pred cccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHH-HHHH------H-----
Q 000607 229 FIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINST-LLYC------L----- 296 (1396)
Q Consensus 229 ~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~----- 296 (1396)
.....+... .. -...++.+. ..+.. +..... .....+...+.. ..+. .
T Consensus 298 ----~~~~~v~lt-----~~----g~~~~e~~~----~~l~~--~~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~V 357 (656)
T PRK12898 298 ----AAEKRIELT-----EA----GRARIAELA----ESLPP--AWRGAV-RREELVRQALSALHLFRRDEHYIVRDGKV 357 (656)
T ss_pred ----CCCCeEEEc-----HH----HHHHHHHHh----Ccchh--hcccch-HHHHHHHHHHHHHHHHhcCCceEEECCeE
Confidence 001111100 00 000010000 00000 000000 000000000000 0000 0
Q ss_pred ---H-hHH------HH--HHHHHHHHhhccccchhhhhhcccchHHHHHHHHH---------HHHHHHHHhccCCCcccc
Q 000607 297 ---S-ELG------VW--LALKAAETISCYESDFFAWEQLDGFGETIIKKFGS---------DASQALVTYVPSGAEWSI 355 (1396)
Q Consensus 297 ---~-~lg------~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~l~~~~~~~~~~~~ 355 (1396)
+ ..| .| +.+.+.+.-...+..........-..+.+.+.|-. .....+...+..+. ..+
T Consensus 358 ~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~v-v~I 436 (656)
T PRK12898 358 VIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPV-VRI 436 (656)
T ss_pred EEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCe-EEe
Confidence 0 000 01 01111111100000000000000011122222210 11222332221111 011
Q ss_pred CCCCc---ccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCc
Q 000607 356 GDDSK---FNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429 (1396)
Q Consensus 356 ~~~~~---~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~ 429 (1396)
+.+.+ ... -......|...|++.+.... ..+..+||||+++..++.++..|.. .++++..+||..
T Consensus 437 Pt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~L~~~L~~-----~gi~~~~Lhg~~--- 507 (656)
T PRK12898 437 PTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH-AQGRPVLVGTRSVAASERLSALLRE-----AGLPHQVLNAKQ--- 507 (656)
T ss_pred CCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCEEEeeCCc---
Confidence 11110 011 11223578999999887742 2346799999999999999999997 489999999962
Q ss_pred CCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEE
Q 000607 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLM 499 (1396)
Q Consensus 430 ~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~l 499 (1396)
. +++..+..|+.+...|+|||+++++|+||+ ++. +||+||.|.|.+.|+||+||+||.| |.++.+
T Consensus 508 ---~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~ 582 (656)
T PRK12898 508 ---D--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI 582 (656)
T ss_pred ---H--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE
Confidence 3 556666677777778999999999999999 665 9999999999999999999999998 567777
Q ss_pred EecC
Q 000607 500 VKSG 503 (1396)
Q Consensus 500 v~~~ 503 (1396)
++.+
T Consensus 583 is~e 586 (656)
T PRK12898 583 LSLE 586 (656)
T ss_pred echh
Confidence 7644
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-25 Score=249.16 Aligned_cols=133 Identities=26% Similarity=0.345 Sum_probs=116.9
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAA 1039 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~ 1039 (1396)
.+|+++|+|+|++. .+|.+||||+|+... ||||||||||+||+++++.+||..||+.+||+||.+|+.+|||.+
T Consensus 4 ~~LEkrLGY~Fkn~-----~LL~eALTH~Sys~e-~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnet 77 (467)
T PRK14718 4 SQLESRLRYEFRNA-----ELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS 77 (467)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHHhccCcCcc-cHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHH
Confidence 35788999999886 899999999998765 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHH
Q 000607 1040 LCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 1119 (1396)
Q Consensus 1040 L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a 1119 (1396)
|+++|.++||..||+ ..++.. . ..+ ..+++++||+|||||||+|+|+|++.+
T Consensus 78 LA~IAr~LGL~d~Lr---------lg~gE~----------~-------sgG--~~~~sILADvFEALIGAIYLDsG~e~a 129 (467)
T PRK14718 78 LYEIAQALNISDGLR---------LGEGEL----------R-------SGG--FRRPSILADAFEAIIGAVFLDGGFEAA 129 (467)
T ss_pred HHHHHHHcCchHHHh---------hCCccc----------c-------cCC--CCChhHHHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999 333320 0 011 136799999999999999999999999
Q ss_pred HHHHhhc
Q 000607 1120 LIFLDRI 1126 (1396)
Q Consensus 1120 ~~~~~~l 1126 (1396)
..|+..+
T Consensus 130 ~~fI~~l 136 (467)
T PRK14718 130 QGVIKRL 136 (467)
T ss_pred HHHHHHH
Confidence 9998655
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=251.47 Aligned_cols=338 Identities=19% Similarity=0.269 Sum_probs=219.1
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHH-hc----CCCCcEEEEEeCCcccHHHHHHHHHHhc--
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYL-LR----KPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~-~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
....|.++++.|.+. |+||++|||||||-+|.+.|.+.... .. ..+.-++++++|+++||....+.+.+-+
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 577999999999984 89999999999999999966554432 11 1256689999999999999988887643
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc---C-ccccceeEEEEeccccccCC-CcHH-HHH
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS---Y-FKLNMIKVLILDECHHARGK-HQYA-CIM 165 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~---~-~~l~~i~llI~DEaH~~~~~-~~~~-~im 165 (1396)
|+.|..++|++... ..+...++|+|+||+.+. .+.+. . .-++.+.|+|+||+|.+.++ .|-- .|.
T Consensus 191 ~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 191 LGISVRELTGDTQLT-------KTEIADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred ccceEEEecCcchhh-------HHHHHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHH
Confidence 79999999997543 444678999999999874 33322 1 22477999999999999864 3322 232
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEI 245 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~ 245 (1396)
.+.. +... .....-||+|||||..+ +..+..+|+.. |......|+..=.
T Consensus 263 aRtl-r~ve-ssqs~IRivgLSATlPN-------------~eDvA~fL~vn----------------~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 263 ARTL-RLVE-SSQSMIRIVGLSATLPN-------------YEDVARFLRVN----------------PYAGLFSFDQRYR 311 (1230)
T ss_pred HHHH-HHHH-hhhhheEEEEeeccCCC-------------HHHHHHHhcCC----------------Cccceeeeccccc
Confidence 2222 1111 23456799999999876 34445555432 1112222222111
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcc
Q 000607 246 PHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLD 325 (1396)
Q Consensus 246 ~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (1396)
|.++...+ +|.-+
T Consensus 312 PvpL~~~~---------------------------------------------iG~k~---------------------- 324 (1230)
T KOG0952|consen 312 PVPLTQGF---------------------------------------------IGIKG---------------------- 324 (1230)
T ss_pred ccceeeeE---------------------------------------------Eeeec----------------------
Confidence 11110000 00000
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 326 GFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 326 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.+. .. ..+.+. .-+..+..+.+ ..+.+++|||.+|..+...++
T Consensus 325 ~~~-~~-------~~~~~d------------------------~~~~~kv~e~~-----~~g~qVlvFvhsR~~Ti~tA~ 367 (1230)
T KOG0952|consen 325 KKN-RQ-------QKKNID------------------------EVCYDKVVEFL-----QEGHQVLVFVHSRNETIRTAK 367 (1230)
T ss_pred ccc-hh-------hhhhHH------------------------HHHHHHHHHHH-----HcCCeEEEEEecChHHHHHHH
Confidence 000 00 000000 11222233333 257899999999998888888
Q ss_pred HHHhhcCCCCCceeeEEecC-------------CCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE
Q 000607 406 LLSELLPRHCTWKTKYIAGN-------------NSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~-------------~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
.|.+.... .|....++++. +-.++||...+|+-+.+-|..|.++||+||+.++-|+|+|+-.++|.
T Consensus 368 ~l~~~a~~-~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK 446 (1230)
T KOG0952|consen 368 KLRERAET-NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK 446 (1230)
T ss_pred HHHHHHHh-cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec
Confidence 88765211 34444455443 12347899999999999999999999999999999999999777773
Q ss_pred ----eCCCC------cHHHHHHhhhcccCCC----CcEEEEEecC
Q 000607 473 ----FDPSR------TVCSFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 473 ----fD~p~------s~~~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
||.-. ..-+-+|..|||||.+ |..++|.+.+
T Consensus 447 GT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 447 GTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred CCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 55543 3456789999999987 3455555433
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=285.41 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=98.1
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-----C
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-----D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-----~ 93 (1396)
..|+++|.++++.++++ ++++.+|||+|||+.++.+...+. .++++++||+||++|+.|+.+.++.+. +
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----LKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 35999999999999998 899999999999995544322221 246789999999999999999999854 4
Q ss_pred CeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.++..++|+..... ....|..... .++|+|+||+.|.+.+... . ..+++++|+||||++.+
T Consensus 153 v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 153 VRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred eeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 56677888754331 1122443333 4899999999998766532 2 26799999999999975
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-25 Score=247.17 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=116.7
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAA 1039 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~ 1039 (1396)
.+|+++|+|.|++. .||.+||||+|+... ||||||||||+||+++++.+||..||+.+||+||.+|+.+|||.+
T Consensus 4 ~~LEk~LGY~Fkn~-----~LL~eALTH~Sy~~~-~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~t 77 (413)
T PRK12372 4 SQLESRLRYEFRNA-----ELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS 77 (413)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHH
Confidence 35788999999886 899999999998665 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHH
Q 000607 1040 LCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 1119 (1396)
Q Consensus 1040 L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a 1119 (1396)
|+.+|.++||.+||+ ...+.. . ..+ ..+++++||+|||||||+|+|+|++.+
T Consensus 78 LA~IA~~LgL~~~Lr---------lg~ge~----------~-------sgg--~~~~kILADvfEALIGAIYLDsG~e~a 129 (413)
T PRK12372 78 LYEIAQALNISEGLR---------LGEGEL----------R-------SGG--FRRPSILADAFEAIIGAVFLDGGFEAA 129 (413)
T ss_pred HHHHHHHcCchHhhh---------cCcchh----------h-------cCC--CCCccHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999998 333320 0 011 136799999999999999999999999
Q ss_pred HHHHhhc
Q 000607 1120 LIFLDRI 1126 (1396)
Q Consensus 1120 ~~~~~~l 1126 (1396)
..|+..+
T Consensus 130 ~~fV~~l 136 (413)
T PRK12372 130 QGVIKRL 136 (413)
T ss_pred HHHHHHH
Confidence 9998765
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=261.04 Aligned_cols=404 Identities=20% Similarity=0.247 Sum_probs=250.3
Q ss_pred ccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 20 PFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
-.+|+||.+.++..+. +|+|++..+|.|||...+..+..+.+..+-.+ ..|++||... +..|.+++...++.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g--pflvvvplst-~~~W~~ef~~w~~m 445 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG--PFLVVVPLST-ITAWEREFETWTDM 445 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC--CeEEEeehhh-hHHHHHHHHHHhhh
Confidence 3589999999887764 48999999999999999999888876544332 3789999844 47799999999999
Q ss_pred eEEEEeCCCCcccCCcc-chHHhh----ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--cHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGA-TWKEEM----SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--QYACIMTE 167 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~-~~~~~~----~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~ 167 (1396)
++..|+|+.....--.+ .|...- -..+++++|+++++..- .++.--.|.++++||||++++.. .|.. +..
T Consensus 446 n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~ 522 (1373)
T KOG0384|consen 446 NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDESKLYES-LNQ 522 (1373)
T ss_pred ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchHHHHHHH-HHH
Confidence 99999998432100000 011111 14789999999997543 35555679999999999999652 2222 333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhh-------------------c
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVL-------------------S 227 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l-------------------~ 227 (1396)
|. ..+.|++|+||..++ |.+|-++++-..-. ....+++ .
T Consensus 523 f~----------~~~rllitgTPlQNs-----------ikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~ 581 (1373)
T KOG0384|consen 523 FK----------MNHRLLITGTPLQNS-----------LKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILK 581 (1373)
T ss_pred hc----------ccceeeecCCCcccc-----------HHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhh
Confidence 32 346799999999865 44444444211000 0000110 1
Q ss_pred ccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000607 228 NFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKA 307 (1396)
Q Consensus 228 ~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~ 307 (1396)
.++-+.....+. ..+|......+.-.|..++++|.+.+-..++.. ..+..+.-...++.+..+|-..|-+.
T Consensus 582 P~~lRr~kkdve---kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~-----LtKG~~g~~~~lLNimmELkKccNHp- 652 (1373)
T KOG0384|consen 582 PFLLRRLKKDVE---KSLPPKEETILRVELSDLQKQYYKAILTKNFSA-----LTKGAKGSTPSLLNIMMELKKCCNHP- 652 (1373)
T ss_pred HHHHHHHHhhhc---cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHH-----HhccCCCCCchHHHHHHHHHHhcCCc-
Confidence 111110000000 012222222234445555555544433211110 00111111122233333443333211
Q ss_pred HHHhhccccchhhhhhcccchHHHHHHHHH-HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCC
Q 000607 308 AETISCYESDFFAWEQLDGFGETIIKKFGS-DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386 (1396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~ 386 (1396)
++ +...++.+...+.. .....++.... .|.|+-.|-.+|-..+ ..
T Consensus 653 -----------yL---i~gaee~~~~~~~~~~~d~~L~~lI~-------------------sSGKlVLLDKLL~rLk-~~ 698 (1373)
T KOG0384|consen 653 -----------YL---IKGAEEKILGDFRDKMRDEALQALIQ-------------------SSGKLVLLDKLLPRLK-EG 698 (1373)
T ss_pred -----------cc---cCcHHHHHHHhhhhcchHHHHHHHHH-------------------hcCcEEeHHHHHHHHh-cC
Confidence 11 11112222222211 00011111110 1556655556665553 57
Q ss_pred CeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc---CCeeEEEEecccccccC
Q 000607 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR---GLVNVIVATSILEEGLD 463 (1396)
Q Consensus 387 ~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~---g~~nvLVaTsvleeGiD 463 (1396)
+.|+|||.+-+.+.+.|+++|.. .+++...+.|+. ...-|+..|+.|.. ...-.|+||.+++-|||
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~-----r~ypfQRLDGsv------rgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSL-----RGYPFQRLDGSV------RGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHH-----cCCcceeccCCc------chHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 89999999999999999999985 589999999985 77899999999986 45789999999999999
Q ss_pred CCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 464 VQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 464 Ip~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
+..++.||.||..|||..-+|+..||+|.|+ .+|-||+.+.
T Consensus 768 LatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 768 LATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999996 4677777653
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=251.05 Aligned_cols=134 Identities=20% Similarity=0.262 Sum_probs=97.7
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhhc
Q 000607 39 IVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMS 118 (1396)
Q Consensus 39 Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~ 118 (1396)
++.++||||||.+++.++.+... .+++++||+|+++|+.|+++.+++.++.++..++|+.+... ....|.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHHc
Confidence 47899999999999877765543 46789999999999999999999988889999999864431 2244665554
Q ss_pred -cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---Cc-HH-HHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 119 -KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQ-YA-CIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 119 -~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~~-~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
..+|||+|+..+ +..+.++++||+||+|+..-. .| |. +-+..+... .....++++||||.
T Consensus 75 g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------~~~~~vil~SATPs 140 (505)
T TIGR00595 75 GEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------KFNCPVVLGSATPS 140 (505)
T ss_pred CCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH------hcCCCEEEEeCCCC
Confidence 579999999866 345789999999999998722 22 21 112222211 12356888999994
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-25 Score=220.59 Aligned_cols=126 Identities=40% Similarity=0.560 Sum_probs=101.8
Q ss_pred CHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHH
Q 000607 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI 1243 (1396)
Q Consensus 1164 ~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i 1243 (1396)
|+.|+.+||||+||. ++...+|||||||||+||+++|++|+|+++| .++|.|+.+|+.+|++++|+.+|.++||+++|
T Consensus 1 ~~~Ll~~alTH~S~~-~~~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i 78 (128)
T PF14622_consen 1 DDELLLQALTHKSYA-HERKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLI 78 (128)
T ss_dssp SHHHHHHHTB-HHHH-HHTCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-
T ss_pred CHHHHHHHhcCcccc-ccccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHH
Confidence 688999999999996 4446899999999999999999999999954 48999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhcccc
Q 000607 1244 LHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEP 1314 (1396)
Q Consensus 1244 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~ 1314 (1396)
+...+..... ....+|+++|+|||+|||||+|+|+ +.+.+|+.+.+-|
T Consensus 79 ~~~~~~~~~~---------------------~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 79 RWGPGEEKSG---------------------GSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp B--HHHHHTT---------------------GGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred HhCccHhhcC---------------------CCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 9954332110 1346799999999999999999998 5888998876654
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=244.27 Aligned_cols=346 Identities=20% Similarity=0.236 Sum_probs=222.7
Q ss_pred cCCCcccchHHHHHHHHHHhc----C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 15 SADTLPFARNYQLEALENALK----Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~----~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+....+.+|.||..++.++.+ + .++++|.||+|||.+|+.+|..+ ++.+..||+||||.+++|+.|-+..+
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL---~r~~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRL---IKSGWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHH---HhcchhheeeEEechHHHHHHHHHHH
Confidence 334566799999999987765 3 49999999999999999888665 55678899999999999999999999
Q ss_pred HHhcCC--eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-----CccccceeEEEEeccccccCCCcH
Q 000607 89 KMHTDL--KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-----YFKLNMIKVLILDECHHARGKHQY 161 (1396)
Q Consensus 89 ~~~~~~--~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-----~~~l~~i~llI~DEaH~~~~~~~~ 161 (1396)
..+.+. .+..+.+. ..+ ..++|.|+|+|.+...+.+. .+....++|||+||||+-.-+ -|
T Consensus 236 ~~~~P~~~~~n~i~~~-~~~-----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~ 302 (875)
T COG4096 236 EDFLPFGTKMNKIEDK-KGD-----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EW 302 (875)
T ss_pred HHhCCCccceeeeecc-cCC-----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hh
Confidence 998753 34444443 222 15899999999999877654 345567999999999998743 56
Q ss_pred HHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCccee---
Q 000607 162 ACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKF--- 237 (1396)
Q Consensus 162 ~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~--- 237 (1396)
..|+..|-. .++||||||-...+.+. -..+ +..++..+.++.+.....-|...+
T Consensus 303 ~~I~dYFdA-----------~~~gLTATP~~~~d~~T-----------~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~ 360 (875)
T COG4096 303 SSILDYFDA-----------ATQGLTATPKETIDRST-----------YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRID 360 (875)
T ss_pred HHHHHHHHH-----------HHHhhccCccccccccc-----------ccccCCCcceeecHHHHhhccccCCCCceEEe
Confidence 677776653 24678999976433221 1223 566677766777665444332111
Q ss_pred EeccCCCCc-hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc
Q 000607 238 KFYKYDEIP-HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYES 316 (1396)
Q Consensus 238 ~~y~~~~~~-~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~ 316 (1396)
..++..... ....+ . .+... +.+.. +.
T Consensus 361 ~~~~~~G~~~~~~se----r----ek~~g-------------------------------------------~~i~~-dd 388 (875)
T COG4096 361 TDFDLDGWKPDAGSE----R----EKLQG-------------------------------------------EAIDE-DD 388 (875)
T ss_pred eeccccCcCcCccch----h----hhhhc-------------------------------------------cccCc-cc
Confidence 111111100 00000 0 00000 00000 00
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccH-HHHHHHHHHhhh-cCCCCeeEEEEe
Q 000607 317 DFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTE-KIVCLIESLLEY-RGVEDIRCIIFV 394 (1396)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-Kv~~L~~~L~~~-~~~~~~k~IIFv 394 (1396)
. .+. .......+....-+. -...+-+.|+.- ....-.|+||||
T Consensus 389 ~--~~~---------------------------------~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa 433 (875)
T COG4096 389 Q--NFE---------------------------------ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFA 433 (875)
T ss_pred c--ccc---------------------------------ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEe
Confidence 0 000 000000000000011 122233333331 112257999999
Q ss_pred chHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC--eeEEEEecccccccCCCcccEEEE
Q 000607 395 ERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL--VNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 395 ~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~--~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
.+..+|+.+...|....|.+++--+..++|+. .+-+..+++|...+ -+|.|+.+++..|||+|.|.++|.
T Consensus 434 ~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--------~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 434 KNHDHAERIREALVNEYPEYNGRYAMKITGDA--------EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred eCcHHHHHHHHHHHHhCccccCceEEEEeccc--------hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 99999999999999887775555567788864 23345566665533 478888899999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCC
Q 000607 473 FDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+-...|...|.|++||+-|.-
T Consensus 506 ~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhhhHHHHHHHhcCccccC
Confidence 999999999999999998853
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-24 Score=197.18 Aligned_cols=84 Identities=43% Similarity=0.681 Sum_probs=62.2
Q ss_pred hHHHHHHhhccCCCCCCCCCccEEEE--eCCeEEEEEEcCCCCCCccc--cccCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000607 560 SVSLIYFYCSRLPSDGYFKPTPKFHI--NKEMGICTLYLPNNCPIQTV--IAQGNIKTLKQAACLEACKKLHQIGALTDN 635 (1396)
Q Consensus 560 ai~~l~~yc~~lp~d~~~~~~p~~~i--~~~~~~~~v~LP~~~p~~~~--~~~~~~~~Ak~~aAf~a~~~L~~~g~ldd~ 635 (1396)
|+++|||||++||+|.|+.++|.|.+ .+++|+|+|+||.++|++.+ ++|++|+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999998 55689999999999999998 899999999999999999999999999999
Q ss_pred CCcccccc
Q 000607 636 LLPDIVVE 643 (1396)
Q Consensus 636 L~P~~~~~ 643 (1396)
|+|...++
T Consensus 81 L~P~~~~~ 88 (90)
T PF03368_consen 81 LLPISKER 88 (90)
T ss_dssp S--HHHH-
T ss_pred cCCCCCCc
Confidence 99987543
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=235.83 Aligned_cols=427 Identities=19% Similarity=0.222 Sum_probs=245.6
Q ss_pred CcccchHHHHHHHHHHh----cC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENAL----KQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l----~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
+.+++.+||.-.+.+.. ++ |+|+++++|.|||.+++..+..+.+. +....=||+||...| +.|.++|.+++
T Consensus 396 s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~---g~~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 396 SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQI---GNPGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHc---CCCCCcEEEecchhH-HHHHHHHHHhC
Confidence 35669999999998765 23 89999999999999998877655442 223336999999766 89999999998
Q ss_pred C-CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHh-HhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 D-LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDG-LRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 ~-~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~-l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+ ++|..|+|...-..--.......-..++|+|+||+....- -.+.+++-.+++++|+||+|.+++..+++ |.
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR------y~ 545 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER------YK 545 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH------HH
Confidence 5 8999999973111000001111122789999999987632 23557777889999999999999764322 21
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEecc--C--------------------------
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCA--S-------------------------- 222 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~--~-------------------------- 222 (1396)
..+ .-+....|+||+||..++-. +-+.-|+=.| .+++... +
T Consensus 546 ~LM---~I~An~RlLLTGTPLQNNL~-------ELiSLL~Fvl-P~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIs 614 (941)
T KOG0389|consen 546 HLM---SINANFRLLLTGTPLQNNLK-------ELISLLAFVL-PKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERIS 614 (941)
T ss_pred Hhc---cccccceEEeeCCcccccHH-------HHHHHHHHHh-hHhhhccchHHHHHHhccCCccchhhHHHHHHHHHH
Confidence 111 12245689999999987521 1121111111 1111100 0
Q ss_pred --------------hhhhcccccCCcceeEeccCCC-CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHH--HHHHH
Q 000607 223 --------------ESVLSNFIPFSTAKFKFYKYDE-IPHALYTHLADELAMIELKHTRSLENLDLNEAQAEL--IRKKV 285 (1396)
Q Consensus 223 --------------~~~l~~~~~~~~~~~~~y~~~~-~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~--~~~~~ 285 (1396)
.+++.+..|. +...+.|-... ....++..+.+. +...+...... +.... ..-++
T Consensus 615 rAK~im~PFILRR~K~qVL~~LPp-K~~~Ie~c~mse~Q~~~Y~~~~~~-------~~~~~~~~~~n-s~~~~~~vlmql 685 (941)
T KOG0389|consen 615 RAKTIMKPFILRRLKSQVLKQLPP-KIQRIEYCEMSEKQKQLYDELIEL-------YDVKLNEVSKN-SELKSGNVLMQL 685 (941)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC-ccceeEeeecchHHHHHHHHHHHH-------Hhhhccccccc-cccccchHHHHH
Confidence 0011111111 11122222111 111111111111 10000000000 00000 01111
Q ss_pred HHH-----HHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH--HHHH--HHHHHHHHhccCCCccccC
Q 000607 286 SKI-----NSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK--KFGS--DASQALVTYVPSGAEWSIG 356 (1396)
Q Consensus 286 ~~~-----~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~--~~~~~l~~~~~~~~~~~~~ 356 (1396)
++. +-+..+.-..+.. .++.+..... ++ +.+.+-+.. .++. ++.+...++. ....+.+.
T Consensus 686 RK~AnHPLL~R~~Y~de~L~~-----mak~il~e~a----y~--~~n~qyIfEDm~~msDfelHqLc~~f~-~~~~f~L~ 753 (941)
T KOG0389|consen 686 RKAANHPLLFRSIYTDEKLRK-----MAKRILNEPA----YK--KANEQYIFEDMEVMSDFELHQLCCQFR-HLSKFQLK 753 (941)
T ss_pred HHHhcChhHHHHhccHHHHHH-----HHHHHhCchh----hh--hcCHHHHHHHHHhhhHHHHHHHHHhcC-CCcccccC
Confidence 111 1111111111111 0111100000 00 001110110 1111 1222222221 11111111
Q ss_pred CCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 357 DDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 357 ~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
. .. -..|.|+..|-.+|.... .++.|++||.+.-.+.+.|..+|..+ +++...+.|.+ .-..
T Consensus 754 d--~~----~mdSgK~r~L~~LLp~~k-~~G~RVLiFSQFTqmLDILE~~L~~l-----~~~ylRLDGsT------qV~~ 815 (941)
T KOG0389|consen 754 D--DL----WMDSGKCRKLKELLPKIK-KKGDRVLIFSQFTQMLDILEVVLDTL-----GYKYLRLDGST------QVND 815 (941)
T ss_pred C--ch----hhhhhhHhHHHHHHHHHh-hcCCEEEEeeHHHHHHHHHHHHHHhc-----CceEEeecCCc------cchH
Confidence 0 01 123899999999998864 46799999999999999999999975 78889999986 7789
Q ss_pred HHHHHHHHhcCC--eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 437 QNEIVEEFRRGL--VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 437 r~~~l~~Fr~g~--~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
|+..++.|...+ .-+|++|.+++-|||+..+|.||.||...||-.-.|+-.||+|.|+ .++-+++.+.
T Consensus 816 RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 816 RQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999998765 4578899999999999999999999999999999999999999996 5677777664
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=258.24 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
....+|||++++..+..+++.|+.. .+....+..+||. |++.+|..+++. .|..+|||||+++|+|||||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~--~~~~~~VlpLhg~------Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIp 354 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKL--NLRHTEILPLYAR------LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVP 354 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhc--CCCcceEeecccC------CCHHHHHHHhcc--cCCeeEEEeccHHhhccccC
Confidence 4568999999999999999999864 1123456778887 699999999886 58899999999999999999
Q ss_pred cccEEEEeC---------------CC---CcHHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 466 SCNLVIMFD---------------PS---RTVCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~fD---------------~p---~s~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
++++||+++ +| -|..+|+||.|||||.+ |.++.++++.
T Consensus 355 gI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~ 411 (1294)
T PRK11131 355 GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSED 411 (1294)
T ss_pred cceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHH
Confidence 999999986 33 35578999999999976 6888888754
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=248.14 Aligned_cols=316 Identities=21% Similarity=0.262 Sum_probs=216.8
Q ss_pred CccccccCCCcccchHHHHHHHHHHhc----C---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 9 DTTEEVSADTLPFARNYQLEALENALK----Q---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 9 ~~~~~~~~~~~~~~r~yQ~e~~~~~l~----~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
+..+.+.....+...+=|..+++.+++ + |-+||+|.|-|||-+|+-++-... .++|.|.|||||.-|+
T Consensus 582 ~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-----~~GKQVAvLVPTTlLA 656 (1139)
T COG1197 582 EWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-----MDGKQVAVLVPTTLLA 656 (1139)
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-----cCCCeEEEEcccHHhH
Confidence 334445555566789999999999987 1 799999999999999976443221 2679999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEeCCCCcccCCccchHHhh--ccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 82 PQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM--SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 82 ~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
+|.++.|+.-+ +++|..++-=.+.. .+..-.+.+ ...||||+|...|- +.+.+.++.|||+||=||+.
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~k--E~~~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIIDEEqRFG 729 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAK--EQKEILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIIDEEQRFG 729 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHH--HHHHHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEechhhcC
Confidence 99999998643 56666665432211 111111111 26899999998663 45668999999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcce
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAK 236 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~ 236 (1396)
-.| ++..+.. ...-.+|-|||||+... |.-.| ..+++.+ .+.+|...
T Consensus 730 Vk~------KEkLK~L-----r~~VDvLTLSATPIPRT--------------L~Msm----~GiRdlS----vI~TPP~~ 776 (1139)
T COG1197 730 VKH------KEKLKEL-----RANVDVLTLSATPIPRT--------------LNMSL----SGIRDLS----VIATPPED 776 (1139)
T ss_pred ccH------HHHHHHH-----hccCcEEEeeCCCCcch--------------HHHHH----hcchhhh----hccCCCCC
Confidence 766 4444322 23357999999998753 11111 0111110 11111111
Q ss_pred eEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc
Q 000607 237 FKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYES 316 (1396)
Q Consensus 237 ~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~ 316 (1396)
.. |..++
T Consensus 777 R~-------pV~T~------------------------------------------------------------------ 783 (1139)
T COG1197 777 RL-------PVKTF------------------------------------------------------------------ 783 (1139)
T ss_pred Cc-------ceEEE------------------------------------------------------------------
Confidence 00 00000
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHH-HHhhhcCCCCeeEEEEec
Q 000607 317 DFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIE-SLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~-~L~~~~~~~~~k~IIFv~ 395 (1396)
+... ++.+ +.+ ++++. ..+.++..-.|
T Consensus 784 -------V~~~-----------------------------------------d~~~--ireAI~REl--~RgGQvfYv~N 811 (1139)
T COG1197 784 -------VSEY-----------------------------------------DDLL--IREAILREL--LRGGQVFYVHN 811 (1139)
T ss_pred -------EecC-----------------------------------------ChHH--HHHHHHHHH--hcCCEEEEEec
Confidence 0000 0000 001 11111 24678888889
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCC
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~ 475 (1396)
++++...+...|+++.|. .++.+.||. |+.++-++++.+|-+|+.+|||||.+.|.|||||++|.+|.-+.
T Consensus 812 rV~~Ie~~~~~L~~LVPE---arI~vaHGQ------M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 812 RVESIEKKAERLRELVPE---ARIAVAHGQ------MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred chhhHHHHHHHHHHhCCc---eEEEEeecC------CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 999999999999998665 789999998 89999999999999999999999999999999999999997666
Q ss_pred CC-cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 476 SR-TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 476 p~-s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.. -+.+..|-|||+||.+ +.+++++...
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 54 4789999999999987 4566666643
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=264.04 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=97.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~ 93 (1396)
....|+++|..+++.++.| |+++.+|||+|||..++.++..+.. .+++++||+||++|+.|+++.++.+. +
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 3446999999999999998 8999999999999855444333221 36789999999999999999999865 3
Q ss_pred Ce---EEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LK---VGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~---v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
+. ++.++|+..... ....|..... +++|+|+||+.|.+.+.. +.. +++++|+||||++.+
T Consensus 150 i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhh
Confidence 43 345778754331 0112333333 489999999999887664 222 899999999999986
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=252.92 Aligned_cols=334 Identities=22% Similarity=0.232 Sum_probs=220.9
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~- 93 (1396)
...++.||.++++.+.+| |+||+.+||||||.++++.|-+ +.++.+ ..++|+|-||++|+..|.+.++++. +
T Consensus 68 ~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld--~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILD--HLLRDP-SARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHH--HHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 334899999999999998 9999999999999999986653 334333 4479999999999999999999864 3
Q ss_pred -CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCC--CcHHHHHH
Q 000607 94 -LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGK--HQYACIMT 166 (1396)
Q Consensus 94 -~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~ 166 (1396)
+++..|.|+.... ....-.-..++|+++||++|.-++.+. .+.++++.+||+||+|-..+- .-.+.+++
T Consensus 145 ~v~~~~y~Gdt~~~----~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 145 KVTFGRYTGDTPPE----ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred cceeeeecCCCChH----HHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 7888899985432 111223457999999999998744322 345677999999999988853 23445555
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
...... + ..+..|+++..|||..+.+. .. +...+.......+ ....+......+.+.+-...
T Consensus 221 RL~~~~-~-~~~~~~q~i~~SAT~~np~e---------~~---~~l~~~~f~~~v~----~~g~~~~~~~~~~~~p~~~~ 282 (851)
T COG1205 221 RLLRRL-R-RYGSPLQIICTSATLANPGE---------FA---EELFGRDFEVPVD----EDGSPRGLRYFVRREPPIRE 282 (851)
T ss_pred HHHHHH-h-ccCCCceEEEEeccccChHH---------HH---HHhcCCcceeecc----CCCCCCCceEEEEeCCcchh
Confidence 554322 1 23457899999999876432 11 2222221111000 11223333333333321000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.. . . .+
T Consensus 283 ~~--~----~-----------~r--------------------------------------------------------- 288 (851)
T COG1205 283 LA--E----S-----------IR--------------------------------------------------------- 288 (851)
T ss_pred hh--h----h-----------cc---------------------------------------------------------
Confidence 00 0 0 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.++...+..+... ...++.++|+|+.++..++.+..-
T Consensus 289 ------------------------------------------~s~~~~~~~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~ 325 (851)
T COG1205 289 ------------------------------------------RSALAELATLAAL-LVRNGIQTLVFFRSRKQVELLYLS 325 (851)
T ss_pred ------------------------------------------cchHHHHHHHHHH-HHHcCceEEEEEehhhhhhhhhhc
Confidence 0000001111111 123688999999999999998632
Q ss_pred H----HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-cHHH
Q 000607 407 L----SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVCS 481 (1396)
Q Consensus 407 L----~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~~ 481 (1396)
. ....+. ....+.... .+|...+|.++...|++|++.++++|+.+|-||||.+++.||....|. +..+
T Consensus 326 ~~~~~~~~~~~-l~~~v~~~~------~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~ 398 (851)
T COG1205 326 PRRRLVREGGK-LLDAVSTYR------AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLS 398 (851)
T ss_pred hhHHHhhcchh-hhhheeecc------ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHH
Confidence 2 222100 011222222 348999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhhhcccCCCCc-EEEEEe
Q 000607 482 FIQSRGRARMQNSD-YLLMVK 501 (1396)
Q Consensus 482 yiQr~GRA~R~gs~-~i~lv~ 501 (1396)
+.|+.|||||.+.. .++++.
T Consensus 399 ~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 399 FRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred HHHhhhhccCCCCCceEEEEe
Confidence 99999999999843 333333
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=248.54 Aligned_cols=337 Identities=16% Similarity=0.120 Sum_probs=194.3
Q ss_pred ccchHHHHHHHHHHhc-CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh-----cC
Q 000607 20 PFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH-----TD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-----~~ 93 (1396)
..||++|..+.+.... +.+||.+|||+|||.+|++++..+.. .....+++|..||+++++|.++.++++ ..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~---~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID---QGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH---hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4699999988544332 36999999999999999887665433 334567999999999999999988752 24
Q ss_pred CeEEEEeCCCCccc-C----C--------c------cchHHhh----ccCcEEEecHHHHH-HhHhhcCccccce----e
Q 000607 94 LKVGKYWGDMGVDF-W----D--------G------ATWKEEM----SKHEVLVMTPQILL-DGLRLSYFKLNMI----K 145 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~-~----~--------~------~~~~~~~----~~~~ViV~T~q~L~-~~l~~~~~~l~~i----~ 145 (1396)
.++.+.+|....+. + . . ..|.... --.+|+|+|...++ ..+...+..+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 56788887643110 0 0 0 1333211 13799999986555 4454332222333 4
Q ss_pred EEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhh
Q 000607 146 VLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESV 225 (1396)
Q Consensus 146 llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~ 225 (1396)
+|||||+|.+-. -+..++....... ....-.++.||||+... .. ..|...+.... .
T Consensus 442 vvIiDEVHAyD~--ym~~lL~~~L~~l----~~~g~~vIllSATLP~~--------~r---~~L~~a~~~~~-------~ 497 (878)
T PRK09694 442 VLIVDEVHAYDA--YMYGLLEAVLKAQ----AQAGGSVILLSATLPAT--------LK---QKLLDTYGGHD-------P 497 (878)
T ss_pred eEEEechhhCCH--HHHHHHHHHHHHH----HhcCCcEEEEeCCCCHH--------HH---HHHHHHhcccc-------c
Confidence 899999998832 2333444443221 12234589999998541 11 12222221110 0
Q ss_pred hcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000607 226 LSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLAL 305 (1396)
Q Consensus 226 l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~ 305 (1396)
.... ..|......... . . .. + ...
T Consensus 498 ~~~~--------~~YPlvt~~~~~-~-~-~~-------~-------~~~------------------------------- 521 (878)
T PRK09694 498 VELS--------SAYPLITWRGVN-G-A-QR-------F-------DLS------------------------------- 521 (878)
T ss_pred cccc--------cccccccccccc-c-c-ee-------e-------ecc-------------------------------
Confidence 0000 001100000000 0 0 00 0 000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCC
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGV 385 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~ 385 (1396)
. .... .+........ ........+....+..++... .
T Consensus 522 ----~-~~~~-------------------------------~~~~~~v~v~-----~~~~~~~~~~~~~l~~i~~~~--~ 558 (878)
T PRK09694 522 ----A-HPEQ-------------------------------LPARFTIQLE-----PICLADMLPDLTLLQRMIAAA--N 558 (878)
T ss_pred ----c-cccc-------------------------------cCcceEEEEE-----eeccccccCHHHHHHHHHHHH--h
Confidence 0 0000 0000000000 000000011111122222221 2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHH----HHHHHHH-hcCC---eeEEEEecc
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQ----NEIVEEF-RRGL---VNVIVATSI 457 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r----~~~l~~F-r~g~---~nvLVaTsv 457 (1396)
.+.+++||||++..|..+++.|++..+ ...++..+||. ++..+| +++++.| ++|+ ..|||||+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsr------f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQV 630 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHAR------FTLNDRREKEQRVIENFGKNGKRNQGRILVATQV 630 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCC------CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcc
Confidence 567899999999999999999996421 13678899997 476666 4678899 6676 479999999
Q ss_pred cccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 458 LEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 458 leeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+|.|||| +++++|....| ..+++||.||++|.+
T Consensus 631 iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 631 VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 9999999 68999998888 679999999999975
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=240.37 Aligned_cols=375 Identities=16% Similarity=0.157 Sum_probs=208.9
Q ss_pred cccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHH
Q 000607 19 LPFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEA 87 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~ 87 (1396)
.+.+|.||.++++++.+ ++.+|+++||||||++++.+++.+.. ..+.++++||||+..|+.|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~---~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE---LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh---hcCCCeEEEEECcHHHHHHHHHH
Confidence 45699999999987753 25999999999999999988887653 34567899999999999999999
Q ss_pred HHHhcCCeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhc--Cccccce-eEEEEeccccccCCCcHH
Q 000607 88 IKMHTDLKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLS--YFKLNMI-KVLILDECHHARGKHQYA 162 (1396)
Q Consensus 88 i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~--~~~l~~i-~llI~DEaH~~~~~~~~~ 162 (1396)
|+.+..-.+ .+.. +...+...+. ..+|+|+|.|.|.+.+... ......- .+||+|||||.... .+.
T Consensus 313 f~~~~~~~~---~~~~-----s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~~ 383 (667)
T TIGR00348 313 FQSLQKDCA---ERIE-----SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-ELA 383 (667)
T ss_pred HHhhCCCCC---cccC-----CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HHH
Confidence 998753111 1110 1122333332 4689999999998644321 1111122 38999999998653 466
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~ 242 (1396)
..|+.++ +....|||||||........ ........+..++..+-.+.+......| +.|..
T Consensus 384 ~~l~~~~---------p~a~~lGfTaTP~~~~d~~t-------~~~f~~~fg~~i~~Y~~~~AI~dG~~~~----i~Y~~ 443 (667)
T TIGR00348 384 KNLKKAL---------KNASFFGFTGTPIFKKDRDT-------SLTFAYVFGRYLHRYFITDAIRDGLTVK----IDYED 443 (667)
T ss_pred HHHHhhC---------CCCcEEEEeCCCcccccccc-------cccccCCCCCeEEEeeHHHHhhcCCeee----EEEEe
Confidence 6665544 12479999999987532211 0011111234444444444444432222 22322
Q ss_pred CCCchhh-HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 243 DEIPHAL-YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 243 ~~~~~~~-~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
......+ ...+...++.. ...... .++.
T Consensus 444 ~~~~~~~~~~~l~~~~~~~----~~~~~~---------------------------~~~~-------------------- 472 (667)
T TIGR00348 444 RLPEDHLDRKKLDAFFDEI----FELLPE---------------------------RIRE-------------------- 472 (667)
T ss_pred cchhhccChHHHHHHHHHH----HHhhhc---------------------------cccH--------------------
Confidence 1110000 00000000000 000000 0000
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAI 401 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~ 401 (1396)
.. ...+.............. .........+++-...+......+++|||.+|..|.
T Consensus 473 -----~~----~~~l~~~~~~~~~~~~~~---------------~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~ 528 (667)
T TIGR00348 473 -----IT----KESLKEKLQKTKKILFNE---------------DRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACV 528 (667)
T ss_pred -----HH----HHHHHHHHHHHHhhhcCh---------------HHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHH
Confidence 00 000000000000000000 000111122222222212223589999999999999
Q ss_pred HHHHHHHhhcCCCCCceeeEEecCCCCcC-----------C--CC--HHHHHHHHHHHhc-CCeeEEEEecccccccCCC
Q 000607 402 VLQSLLSELLPRHCTWKTKYIAGNNSGIQ-----------C--QS--RKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 402 ~L~~~L~~~~p~~~~~~~~~l~G~~~~~~-----------~--ms--~~~r~~~l~~Fr~-g~~nvLVaTsvleeGiDIp 465 (1396)
.+.+.|.+..+...+.....++|...... . .. .....+++++|++ +..+|||+++++.+|+|.|
T Consensus 529 ~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 529 EEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred HHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 99999987755422344555655432110 0 00 1123578999987 6789999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCC---CCcEEEEEe
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQ---NSDYLLMVK 501 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~---gs~~i~lv~ 501 (1396)
.+++++..-+.. ...++|.+||+-|. +..+..+++
T Consensus 609 ~l~tLyldKplk-~h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 609 ILNTLYLDKPLK-YHGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred ccceEEEecccc-ccHHHHHHHHhccccCCCCCCEEEEE
Confidence 999887655444 45789999999993 234545554
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=232.34 Aligned_cols=406 Identities=17% Similarity=0.191 Sum_probs=240.2
Q ss_pred cccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCC-----cEEEEEeCCcccHH
Q 000607 19 LPFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSP-----FVAVFLVPKVVLVP 82 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~-----k~vl~LvPt~~Lv~ 82 (1396)
...+||+|.|+++..-+ +.+|++..+|+|||+..+.+|..++.. .+. .+.+|++|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq---~P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ---FPQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh---CcCccccccccEEEccH-HHHH
Confidence 44589999999997654 249999999999999999999877554 344 789999999 9999
Q ss_pred HHHHHHHHhcC---CeEEEEeCCCCcccCC-ccchHHhhc---cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccc
Q 000607 83 QQAEAIKMHTD---LKVGKYWGDMGVDFWD-GATWKEEMS---KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHA 155 (1396)
Q Consensus 83 Q~~~~i~~~~~---~~v~~~~G~~~~~~~~-~~~~~~~~~---~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~ 155 (1396)
.|+++|.++.+ +....++|..+. .|- ...|..... ..-|++.+++.+.+..+ .+....+++||+||+|+.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCc
Confidence 99999999875 455556665332 222 222322221 46788999999976554 455678999999999999
Q ss_pred cCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchh-----------------------------------
Q 000607 156 RGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ----------------------------------- 200 (1396)
Q Consensus 156 ~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~----------------------------------- 200 (1396)
++.. .. ++... ..-+.||.+.||+||.+++..+...
T Consensus 389 kN~~--s~----~~kaL---~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e 459 (776)
T KOG0390|consen 389 KNSD--SL----TLKAL---SSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEE 459 (776)
T ss_pred cchh--hH----HHHHH---HhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchh
Confidence 8742 22 22221 1235789999999999976322100
Q ss_pred --hHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHH
Q 000607 201 --DYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQA 278 (1396)
Q Consensus 201 --~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 278 (1396)
.-.+.+.+|-.+.+.-+... ..+.+.++.|.-.+.++...+..+...++..+.... .
T Consensus 460 ~~~~~~rl~eL~~~t~~fi~rr-t~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~------~-------------- 518 (776)
T KOG0390|consen 460 DREREERLQELRELTNKFILRR-TGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM------K-------------- 518 (776)
T ss_pred hhhhHHHHHHHHHHHHhheeec-ccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH------H--------------
Confidence 00001112222222111111 112344444444444444443222111111111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh--hcccchHHHHHHHHHHHHHHHHHhccCCCccccC
Q 000607 279 ELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE--QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIG 356 (1396)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 356 (1396)
....+.+ .++. .-.++..-+++.... +....+. .+..... .+ ..
T Consensus 519 ---~~~~~~~---------~l~~------~~~L~k~cnhP~L~~~~~~~~~e~----~~~~~~~-~~-----------~~ 564 (776)
T KOG0390|consen 519 ---MRTLKGY---------ALEL------ITKLKKLCNHPSLLLLCEKTEKEK----AFKNPAL-LL-----------DP 564 (776)
T ss_pred ---hhhhhcc---------hhhH------HHHHHHHhcCHHhhcccccccccc----cccChHh-hh-----------cc
Confidence 0000000 0000 001111111111000 0000000 0000000 00 00
Q ss_pred CCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 357 DDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 357 ~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
.........+..+.|+..|+.+|...+.....++.+-.+.+.+.+.+..+++- .|..+..++|+ |+.++
T Consensus 565 ~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~-----~g~~~~rLdG~------~~~~q 633 (776)
T KOG0390|consen 565 GKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW-----RGYEVLRLDGK------TSIKQ 633 (776)
T ss_pred cccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh-----cCceEEEEcCC------CchHH
Confidence 00111112334588999999988654434455566666677777777666663 58999999998 59999
Q ss_pred HHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEEecCCcc
Q 000607 437 QNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMVKSGDST 506 (1396)
Q Consensus 437 r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv~~~~~~ 506 (1396)
|+.+++.|.+.. .-.|.+|.+.++||++-+++-||.||+.|||..-.|+++||-|.|++ .|.|+..|..+
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 999999998733 33566778899999999999999999999999999999999999984 45566666443
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=254.67 Aligned_cols=314 Identities=17% Similarity=0.118 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..+..++++.+.++ .+||+++||||||...-.++. + ...+...++++.-|.+.-+...+..+.+..+..++...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~ll---e-~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICL---E-LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHH---H-cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 44555666666555 478999999999986332221 2 111223456677799888888888888888877777766
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccc-ccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH-ARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
-. +. ++ ...-.+.+|.|||+++|++.+.+.. .++++++|||||||. ..+-.-.-.+++... . ....
T Consensus 145 Y~-vR-~~----~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il----~--~rpd 211 (1283)
T TIGR01967 145 YK-VR-FH----DQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLL----P--RRPD 211 (1283)
T ss_pred eE-Ec-CC----cccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHH----h--hCCC
Confidence 31 11 11 1112368999999999999887654 378999999999994 544221111222222 1 1223
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
.++++||||... ..+.+.++ +.++.+.. ...|.+ +.|........
T Consensus 212 LKlIlmSATld~--------------~~fa~~F~~apvI~V~G-------r~~PVe--v~Y~~~~~~~~----------- 257 (1283)
T TIGR01967 212 LKIIITSATIDP--------------ERFSRHFNNAPIIEVSG-------RTYPVE--VRYRPLVEEQE----------- 257 (1283)
T ss_pred CeEEEEeCCcCH--------------HHHHHHhcCCCEEEECC-------Ccccce--eEEeccccccc-----------
Confidence 579999999832 12333332 22222100 000110 11111000000
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
..
T Consensus 258 -------------------------------------------------------------------~~----------- 259 (1283)
T TIGR01967 258 -------------------------------------------------------------------DD----------- 259 (1283)
T ss_pred -------------------------------------------------------------------ch-----------
Confidence 00
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCcee
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKT 419 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~ 419 (1396)
...+...+.+.+..........+|||++++..+..+.+.|.+... .++.+
T Consensus 260 ----------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~--~~~~V 309 (1283)
T TIGR01967 260 ----------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNL--RHTEI 309 (1283)
T ss_pred ----------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCC--CCcEE
Confidence 001111122222211112346899999999999999999986421 35667
Q ss_pred eEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC------------------cHHH
Q 000607 420 KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR------------------TVCS 481 (1396)
Q Consensus 420 ~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~------------------s~~~ 481 (1396)
..+||. |++.+|.++++.+ +..+|||||+++|.|||||++.+||+++.+. |..+
T Consensus 310 lpLhg~------Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkas 381 (1283)
T TIGR01967 310 LPLYAR------LSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQAS 381 (1283)
T ss_pred EeccCC------CCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHH
Confidence 888887 6999999886654 3468999999999999999999999988532 5679
Q ss_pred HHHhhhcccCCC-CcEEEEEecC
Q 000607 482 FIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 482 yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
|+||.|||||.+ |.|+.++++.
T Consensus 382 a~QRaGRAGR~~~G~cyRLyte~ 404 (1283)
T TIGR01967 382 ANQRKGRCGRVAPGICIRLYSEE 404 (1283)
T ss_pred HHHHhhhhCCCCCceEEEecCHH
Confidence 999999999987 6888888754
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=205.33 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=125.9
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CCe
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DLK 95 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~~ 95 (1396)
-|.+.|.+.++.++-| ++++.+..|.|||.++++.- +.+...-++.-.++++|.|++|+.|...+..++. +.+
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~t--lqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT--LQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhh--hhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 3788999999999888 99999999999999887632 2233333455678999999999999998888764 689
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|++.... + ......-++|+|+||++++.+.+++.++++++...|+|||+.+...-.+++-+++....
T Consensus 142 vaVFfGG~~Ikk-d---ee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~---- 213 (387)
T KOG0329|consen 142 VSVFFGGLFIKK-D---EELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM---- 213 (387)
T ss_pred EEEEEcceeccc-c---HHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhc----
Confidence 999999976652 1 12222368999999999999999999999999999999999998776666666666532
Q ss_pred CCCCCCeEEEEeccCCC
Q 000607 176 GDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~ 192 (1396)
.....+++.+|||...
T Consensus 214 -tp~~KQvmmfsatlsk 229 (387)
T KOG0329|consen 214 -TPHEKQVMMFSATLSK 229 (387)
T ss_pred -Ccccceeeeeeeecch
Confidence 2333467888998743
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=204.57 Aligned_cols=127 Identities=46% Similarity=0.638 Sum_probs=111.3
Q ss_pred HHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhc
Q 000607 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILH 1245 (1396)
Q Consensus 1166 ~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~ 1245 (1396)
.||.+||||||+..+ ..+|||||||||+||+++++.|+|.++|+.+++.|+.+++.+|+|+.|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~--~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~ 78 (129)
T smart00535 1 SLLLRALTHASYSNE--HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRL 78 (129)
T ss_pred CHHHHHhhccccccc--CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHcc
Confidence 378999999999732 269999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccC
Q 000607 1246 ASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMIT 1317 (1396)
Q Consensus 1246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~ 1317 (1396)
+....... | ...+|+++|+|||+|||||+|+|. +.+++|+..++.|.++
T Consensus 79 ~~~~~~~~------------------~---~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~~ 127 (129)
T smart00535 79 GRGEAISG------------------G---RDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRLE 127 (129)
T ss_pred CchHhhcC------------------C---cccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhc
Confidence 87543210 1 257899999999999999999985 7999999988876543
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=205.61 Aligned_cols=130 Identities=43% Similarity=0.576 Sum_probs=114.6
Q ss_pred HHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhc
Q 000607 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILH 1245 (1396)
Q Consensus 1166 ~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~ 1245 (1396)
.|+.+||||+|+.......+|||||||||+||+++++.|++.++|+.+++.++.+++.+|||.+|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 37899999999973333589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCc
Q 000607 1246 ASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITP 1318 (1396)
Q Consensus 1246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~ 1318 (1396)
.+..... .....+|+++|+|||+|||||+|+|. +.+++|+..++.|.+..
T Consensus 81 ~~~~~~~---------------------~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEKS---------------------GGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhhc---------------------CCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 8765421 11457899999999999999999998 78999999988776543
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-23 Score=203.82 Aligned_cols=120 Identities=32% Similarity=0.465 Sum_probs=97.0
Q ss_pred HHHHHHHhcccCccc--cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccc
Q 000607 978 TIKVLEAITTKKCQE--DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRT 1055 (1396)
Q Consensus 978 ~~~l~~AlT~~s~~~--~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~ 1055 (1396)
+.++++||||+|+.. .-||||||||||+||+++++.++|..+| .++|.++..|+.+|+|.+|+++|.++||+++|+
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~- 79 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLIR- 79 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHHH-
Confidence 478999999999864 3599999999999999999999999954 489999999999999999999999999999999
Q ss_pred cccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1056 ESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1056 ~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
| .++. . ........|.+||+|||+|||+|+|+|.+.|.+|+...
T Consensus 80 -------~-~~~~----------~---------~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 80 -------W-GPGE----------E---------KSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKL 123 (128)
T ss_dssp ----------HHH----------H---------HTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred -------h-CccH----------h---------hcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3 2211 0 00112467899999999999999999999999997643
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-22 Score=219.43 Aligned_cols=134 Identities=27% Similarity=0.356 Sum_probs=116.4
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccc----cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQE----DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~----~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..|++.|+|+|++. .++++||||+|+.. ..||||||||||++|+++++.+||..||+.++|.|+.+|+.+|
T Consensus 6 ~~l~~~lg~~f~~~-----~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lv 80 (229)
T PRK00102 6 EELQKKLGYTFKDP-----ELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALV 80 (229)
T ss_pred HHHHHHhCCCCCCH-----HHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHh
Confidence 46889999999886 89999999999853 4599999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
||.+|+.+|.++||+.||+. .++.. .. .+ ..++|.+||+|||+|||+|+|+|
T Consensus 81 sn~~la~~a~~lgl~~~i~~---------~~~~~----------~~-------~~--~~~~k~~ad~~EA~iGAiyld~g 132 (229)
T PRK00102 81 REESLAEIARELGLGEYLLL---------GKGEE----------KS-------GG--RRRPSILADAFEALIGAIYLDQG 132 (229)
T ss_pred CHHHHHHHHHHCCcHHHHcc---------CcHHH----------Hc-------CC--CCCccHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999982 22210 00 00 13578999999999999999999
Q ss_pred hhHHHHHHhhc
Q 000607 1116 ENVGLIFLDRI 1126 (1396)
Q Consensus 1116 ~~~a~~~~~~l 1126 (1396)
.+.+.+|+..+
T Consensus 133 ~~~~~~~i~~~ 143 (229)
T PRK00102 133 LEAARKFILRL 143 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999998766
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=190.08 Aligned_cols=306 Identities=19% Similarity=0.243 Sum_probs=199.8
Q ss_pred cccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 19 LPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
.-.+.++|+.+-+.+.. .++||.+-||+|||.+.--.|..... .|.++.+..|.+..|...+..+++-+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~-----~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN-----QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh-----cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 34488999988776654 37999999999999976555554322 56789999999999999999998754
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
+..+..++|+... .+ ...++|||...|++..+ .+++||+||++.+- |..--.-.+ .
T Consensus 170 ~~~I~~Lyg~S~~----------~f-r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP----~~~d~~L~~-A- 225 (441)
T COG4098 170 NCDIDLLYGDSDS----------YF-RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFP----FSDDQSLQY-A- 225 (441)
T ss_pred cCCeeeEecCCch----------hc-cccEEEEehHHHHHHHh-------hccEEEEecccccc----ccCCHHHHH-H-
Confidence 5889999998422 12 37889999888876643 78999999999875 221111111 1
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.++.....--++.|||||... |++ .+.......+- | ..|...+.|.+-.-
T Consensus 226 v~~ark~~g~~IylTATp~k~---------------l~r~~~~g~~~~~kl----------p----~RfH~~pLpvPkf~ 276 (441)
T COG4098 226 VKKARKKEGATIYLTATPTKK---------------LERKILKGNLRILKL----------P----ARFHGKPLPVPKFV 276 (441)
T ss_pred HHHhhcccCceEEEecCChHH---------------HHHHhhhCCeeEeec----------c----hhhcCCCCCCCceE
Confidence 111122233478899999641 221 11222211100 0 00111111111000
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
+ .|.|.-
T Consensus 277 ---------------w-------------------------------~~~~~k--------------------------- 283 (441)
T COG4098 277 ---------------W-------------------------------IGNWNK--------------------------- 283 (441)
T ss_pred ---------------E-------------------------------eccHHH---------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
.+....+.+|+.. .|+.. ...+..++||+++..+.+.++..|++..
T Consensus 284 ------------------------------~l~r~kl~~kl~~---~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~~ 329 (441)
T COG4098 284 ------------------------------KLQRNKLPLKLKR---WLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKKL 329 (441)
T ss_pred ------------------------------HhhhccCCHHHHH---HHHHH-HhcCCcEEEEecchHHHHHHHHHHHhhC
Confidence 0000111444433 33332 2467889999999999999999996532
Q ss_pred CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCC--CcHHHHHHhhhcc
Q 000607 412 PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS--RTVCSFIQSRGRA 489 (1396)
Q Consensus 412 p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p--~s~~~yiQr~GRA 489 (1396)
...+++++|+.. ..|.+.++.||+|++.+||+|.++|+|+.+|+++++|.-.-. .|..+.+|..||+
T Consensus 330 ---~~~~i~~Vhs~d--------~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRv 398 (441)
T COG4098 330 ---PKETIASVHSED--------QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRV 398 (441)
T ss_pred ---CccceeeeeccC--------ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhc
Confidence 456778888864 578999999999999999999999999999999998864433 5788999999999
Q ss_pred cCCC----CcEEEEE
Q 000607 490 RMQN----SDYLLMV 500 (1396)
Q Consensus 490 ~R~g----s~~i~lv 500 (1396)
||.- |.++.|-
T Consensus 399 GRs~~~PtGdv~FFH 413 (441)
T COG4098 399 GRSLERPTGDVLFFH 413 (441)
T ss_pred cCCCcCCCCcEEEEe
Confidence 9964 4554443
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-21 Score=240.84 Aligned_cols=312 Identities=18% Similarity=0.207 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-|+-|.|++...+.| ++.|.||||.||.+++.+...- .++.+++|.|.++|+..|...+ ...++....+.
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------~~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~ 335 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------LGGVTVVISPLISLMQDQVTHL-SKKGIPACFLS 335 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------cCCceEEeccHHHHHHHHHHhh-hhcCcceeecc
Confidence 599999999999998 7999999999999998764331 2348999999999999999888 44588888888
Q ss_pred CCCCcccCCccchHHhhc---cCcEEEecHHHHHHh--HhhcCccccc---eeEEEEeccccccCC-C----cHHHHHHH
Q 000607 101 GDMGVDFWDGATWKEEMS---KHEVLVMTPQILLDG--LRLSYFKLNM---IKVLILDECHHARGK-H----QYACIMTE 167 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~---~~~ViV~T~q~L~~~--l~~~~~~l~~---i~llI~DEaH~~~~~-~----~~~~im~~ 167 (1396)
|+..... ....|+.... ..+|+..||+.+... +.+....+.. +.++|+||||+.... | .|.++- .
T Consensus 336 s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~-~ 413 (941)
T KOG0351|consen 336 SIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG-L 413 (941)
T ss_pred ccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH-H
Confidence 8754321 1123444333 479999999998742 2333334445 899999999999853 3 233321 1
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
+. ..... -.+++||||-.. .+.++|-+.-.+-+..++.. -..++. ..|+..
T Consensus 414 l~-----~~~~~-vP~iALTATAT~--------~v~~DIi~~L~l~~~~~~~~--------sfnR~N---L~yeV~---- 464 (941)
T KOG0351|consen 414 LR-----IRFPG-VPFIALTATATE--------RVREDVIRSLGLRNPELFKS--------SFNRPN---LKYEVS---- 464 (941)
T ss_pred HH-----hhCCC-CCeEEeehhccH--------HHHHHHHHHhCCCCcceecc--------cCCCCC---ceEEEE----
Confidence 11 11122 348999999743 22222222212111111110 000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.
T Consensus 465 ---~---------------------------------------------------------------------------- 465 (941)
T KOG0351|consen 465 ---P---------------------------------------------------------------------------- 465 (941)
T ss_pred ---e----------------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
.........+.+.++. ..++..+||+|.+|.+++.++..|
T Consensus 466 --------------------------------------k~~~~~~~~~~~~~~~--~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 466 --------------------------------------KTDKDALLDILEESKL--RHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred --------------------------------------ccCccchHHHHHHhhh--cCCCCCeEEEeCCcchHHHHHHHH
Confidence 0000000111112222 246788999999999999999999
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhh
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~G 487 (1396)
... ++++.+.|+. |+.++|+.+.++|-.++++|+|||=+.+.|||.|++..||||.+|.+...|.|-.|
T Consensus 506 ~~~-----~~~a~~YHAG------l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~G 574 (941)
T KOG0351|consen 506 RSL-----GKSAAFYHAG------LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAG 574 (941)
T ss_pred HHh-----chhhHhhhcC------CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhcc
Confidence 975 6777777765 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC--CcEEEEEecC
Q 000607 488 RARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 488 RA~R~g--s~~i~lv~~~ 503 (1396)
||||-| +.++++..-.
T Consensus 575 RAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 575 RAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred ccCcCCCcceeEEecchh
Confidence 999999 6777776544
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=228.65 Aligned_cols=328 Identities=21% Similarity=0.307 Sum_probs=204.8
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHH-HHHHHHHHhcCC-----CCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIM-LLRSYAYLLRKP-----SPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iail-li~~l~~~~~~~-----~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
+.+.|-.+...++.+ |+++|+|||+|||-+|++ +++++....+.. ..-++++++|..+||..|...|.+.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 788999999999985 899999999999999998 455443322211 23479999999999999999888653
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCC-CcH-HHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGK-HQY-ACIMT 166 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~-~~~-~~im~ 166 (1396)
|++|+..+|+.... ...+...+|+|+||+...-.-+++. -..+-++++|+||.|...++ .|- ..|..
T Consensus 390 ~~GI~V~ElTgD~~l~-------~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLG-------KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred ccCcEEEEecccccch-------hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 78999999986544 4566789999999998743333321 11245899999999999643 232 23333
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
....+. ......+|++|||||..+-.+ .. .|..-+.+....|+..-.|
T Consensus 463 Rt~r~s--es~~e~~RlVGLSATLPNy~D-------------V~-----------------~Fl~v~~~glf~fd~syRp 510 (1674)
T KOG0951|consen 463 RTFRRS--ESTEEGSRLVGLSATLPNYED-------------VA-----------------SFLRVDPEGLFYFDSSYRP 510 (1674)
T ss_pred HHHHHh--hhcccCceeeeecccCCchhh-------------hH-----------------HHhccCcccccccCcccCc
Confidence 333221 122346899999999976321 11 1212112222223222122
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.++...+.. .. .++.+++
T Consensus 511 vPL~qq~Ig-----------------i~------ek~~~~~--------------------------------------- 528 (1674)
T KOG0951|consen 511 VPLKQQYIG-----------------IT------EKKPLKR--------------------------------------- 528 (1674)
T ss_pred CCccceEec-----------------cc------cCCchHH---------------------------------------
Confidence 221110000 00 0000000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+..... ...+++.. ....++||||.+|..+...++.
T Consensus 529 -------------~qamNe~---------------------------~yeKVm~~---agk~qVLVFVHsRkET~ktA~a 565 (1674)
T KOG0951|consen 529 -------------FQAMNEA---------------------------CYEKVLEH---AGKNQVLVFVHSRKETAKTARA 565 (1674)
T ss_pred -------------HHHHHHH---------------------------HHHHHHHh---CCCCcEEEEEEechHHHHHHHH
Confidence 0000000 00011111 2447899999998877776666
Q ss_pred HHhhc----------CC-------C---------CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccccc
Q 000607 407 LSELL----------PR-------H---------CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEE 460 (1396)
Q Consensus 407 L~~~~----------p~-------~---------~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvlee 460 (1396)
+++.. .. + ..++-..=+|-...++||+..+|..+.+.|++|.+.+||+|..++.
T Consensus 566 IRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlaw 645 (1674)
T KOG0951|consen 566 IRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAW 645 (1674)
T ss_pred HHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhh
Confidence 66211 00 0 0001001112112346899999999999999999999999999999
Q ss_pred ccCCCcccEEE----EeCC------CCcHHHHHHhhhcccCCC
Q 000607 461 GLDVQSCNLVI----MFDP------SRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 461 GiDIp~~~lVI----~fD~------p~s~~~yiQr~GRA~R~g 493 (1396)
|+|+|+-.++| -||+ +.++.+.+|+.|||||.+
T Consensus 646 gvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 646 GVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred hcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 99999988888 4665 457899999999999986
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=195.22 Aligned_cols=118 Identities=32% Similarity=0.432 Sum_probs=103.7
Q ss_pred HHHHHhcccCccccC-CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccccccc
Q 000607 980 KVLEAITTKKCQEDF-HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESF 1058 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~~-~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f 1058 (1396)
++++||||+|+.+.. ||||||||||+||+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||++|++...+
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 688999999998876 9999999999999999999999999999999999999999999999999999999999983211
Q ss_pred CCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhh
Q 000607 1059 DPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDR 1125 (1396)
Q Consensus 1059 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~ 1125 (1396)
.. ......+.|.+||+|||+|||+|+++|.+.+.+|+..
T Consensus 82 --------~~--------------------~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 82 --------EA--------------------ISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRD 120 (129)
T ss_pred --------Hh--------------------hcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 10 0001147899999999999999999999999998753
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=214.68 Aligned_cols=132 Identities=26% Similarity=0.358 Sum_probs=114.5
Q ss_pred HHHHHhhccccCCCCCHHHHHHHhcccCcccc-----CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccc
Q 000607 962 LKNMLLDHCMQNVTIPTIKVLEAITTKKCQED-----FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIIS 1036 (1396)
Q Consensus 962 l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~-----~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1036 (1396)
|++.|+|+|++. .++.+||||+|+... .||||||||||++|+++++.++|..||+.++|.|+.+|+.+||
T Consensus 1 ~e~~lgy~F~~~-----~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvs 75 (220)
T TIGR02191 1 LEKRLGYKFKNK-----ELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVS 75 (220)
T ss_pred ChHHhCCCcCCH-----HHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 467889999887 899999999998643 3999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh
Q 000607 1037 NAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116 (1396)
Q Consensus 1037 n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~ 1116 (1396)
|.+|+.+|.++||+.||+ ..++.. ......+.|.+||+|||+|||+|+|+|.
T Consensus 76 n~~la~~a~~~gl~~~i~---------~~~~~~-------------------~~~~~~~~k~~ad~~eAliGAiyld~g~ 127 (220)
T TIGR02191 76 EESLAEVARELGLGKFLL---------LGKGEE-------------------KSGGRRRESILADAFEALIGAIYLDSGL 127 (220)
T ss_pred HHHHHHHHHHCCcHHHhc---------cCchHh-------------------hcCCcccchHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999998 222220 0001135789999999999999999999
Q ss_pred hHHHHHHhhc
Q 000607 1117 NVGLIFLDRI 1126 (1396)
Q Consensus 1117 ~~a~~~~~~l 1126 (1396)
+.|.+|+..+
T Consensus 128 ~~~~~~i~~~ 137 (220)
T TIGR02191 128 EAARKFILKL 137 (220)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=196.68 Aligned_cols=119 Identities=34% Similarity=0.509 Sum_probs=106.3
Q ss_pred HHHHHhcccCcccc---CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccccc
Q 000607 980 KVLEAITTKKCQED---FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~---~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~ 1056 (1396)
++++||||+|+... .||||||||||+||+++++.++|..+|+.++|.++.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68899999999875 799999999999999999999999999999999999999999999999999999999999942
Q ss_pred ccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1057 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
+.... .....++|.+||+|||+|||+|+++|.+.+.+|+.++
T Consensus 82 ~~~~~----------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~ 123 (133)
T cd00593 82 KGEEK----------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRL 123 (133)
T ss_pred chHhh----------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22110 0123678999999999999999999999999999885
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=207.13 Aligned_cols=330 Identities=18% Similarity=0.258 Sum_probs=215.4
Q ss_pred CCcccchHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 17 DTLPFARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
.|..++||||...+.+...+ ..||++|.|+|||++.+.++..+ +|++++||.+-.-|+||...+..+.
T Consensus 298 KPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 298 KPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred CcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhc
Confidence 34556899999999998863 49999999999999987655433 6789999999999999999999887
Q ss_pred C---CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--------cCccccceeEEEEeccccccCCCcH
Q 000607 93 D---LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--------SYFKLNMIKVLILDECHHARGKHQY 161 (1396)
Q Consensus 93 ~---~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~ 161 (1396)
. -.++.++.+. .+ ..-.++.|+|+||..+..--.+ .++.-..|.++|+||+|-... +.+
T Consensus 370 ti~d~~i~rFTsd~-Ke--------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MF 439 (776)
T KOG1123|consen 370 TIQDDQICRFTSDA-KE--------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMF 439 (776)
T ss_pred ccCccceEEeeccc-cc--------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHH
Confidence 4 4566677652 11 1223788999999888643222 145567899999999998764 245
Q ss_pred HHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc--cccCCcceeEe
Q 000607 162 ACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN--FIPFSTAKFKF 239 (1396)
Q Consensus 162 ~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~--~~~~~~~~~~~ 239 (1396)
++++.-.-+ --.||||||.++.++. |..|--+++.+.|.. +.-+|.+ ++.+..-..
T Consensus 440 RRVlsiv~a----------HcKLGLTATLvREDdK---------I~DLNFLIGPKlYEA-nWmdL~~kGhIA~VqCaE-- 497 (776)
T KOG1123|consen 440 RRVLSIVQA----------HCKLGLTATLVREDDK---------ITDLNFLIGPKLYEA-NWMDLQKKGHIAKVQCAE-- 497 (776)
T ss_pred HHHHHHHHH----------HhhccceeEEeecccc---------ccccceeecchhhhc-cHHHHHhCCceeEEeeee--
Confidence 555443321 1259999999987653 333444444444433 1122211 111111111
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchh
Q 000607 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFF 319 (1396)
Q Consensus 240 y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~ 319 (1396)
.||.
T Consensus 498 -------------------------------------------------------------VWCp--------------- 501 (776)
T KOG1123|consen 498 -------------------------------------------------------------VWCP--------------- 501 (776)
T ss_pred -------------------------------------------------------------eecC---------------
Confidence 1111
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHH
Q 000607 320 AWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVIT 399 (1396)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~t 399 (1396)
...++.+.|+..-.+.- ..+ . . ..|.--..-+.|-.|.+..+.++|||...+..
T Consensus 502 -------Mt~eFy~eYL~~~t~kr-~lL------y-------v-----MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 502 -------MTPEFYREYLRENTRKR-MLL------Y-------V-----MNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred -------CCHHHHHHHHhhhhhhh-hee------e-------e-----cCcchhHHHHHHHHHHHhcCCeEEEEeccHHH
Confidence 11112222222111000 000 0 0 02222223344444444578999999998877
Q ss_pred HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-CeeEEEEecccccccCCCcccEEEEeCCC-C
Q 000607 400 AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-LVNVIVATSILEEGLDVQSCNLVIMFDPS-R 477 (1396)
Q Consensus 400 a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~~nvLVaTsvleeGiDIp~~~lVI~fD~p-~ 477 (1396)
....+--|.+ -++.|.+ ++.+|.+++++|+.+ .+|.++-+.|+...||+|.+|++|..... -
T Consensus 556 Lk~YAikl~K----------pfIYG~T------sq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G 619 (776)
T KOG1123|consen 556 LKEYAIKLGK----------PFIYGPT------SQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG 619 (776)
T ss_pred HHHHHHHcCC----------ceEECCC------chhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc
Confidence 6665544443 2678876 899999999999864 58999999999999999999999988664 4
Q ss_pred cHHHHHHhhhcccCCC--------CcEEEEEecCC
Q 000607 478 TVCSFIQSRGRARMQN--------SDYLLMVKSGD 504 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--------s~~i~lv~~~~ 504 (1396)
|-++-.||.||.-|+. ..++.+|..+.
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 6889999999986643 25778887654
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=190.87 Aligned_cols=113 Identities=35% Similarity=0.535 Sum_probs=90.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCC-CCCCCCcc
Q 000607 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPG-DNSGSYEL 1075 (1396)
Q Consensus 997 erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~-~~~~~~~~ 1075 (1396)
|||||||||||+++++.++|.+||+.++|.||.+|+.+|||.+|+.+|.++||++|++..+|++..|..+. .......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGD- 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcc-
Confidence 89999999999999999999999999999999999999999999999999999999999999988777661 1000000
Q ss_pred CcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
.. . ...+....+....|.+||+|||+|||+|+|+|
T Consensus 80 -~~-~---~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 80 -SE-S---SISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp ----C----SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cc-c---ccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 00 0 00001114457899999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=193.49 Aligned_cols=329 Identities=18% Similarity=0.254 Sum_probs=200.5
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEE
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKY 99 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 99 (1396)
-.+-|..++..+.++ ++-|+||||+||++++.+... . .+.+++++.|..+|+..|.+.+.+. .+++..+
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL--~------~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SL 91 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL--V------HGGITIVISPLIALIKDQIDHLKRL-KVPCESL 91 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH--H------hCCeEEEehHHHHHHHHHHHHHHhc-CCchhHh
Confidence 467899999999886 699999999999999886432 1 1338999999999999999998874 3333323
Q ss_pred eCCCCcccCCccc----hHHhhccCcEEEecHHHHHH----hHhhcCccccceeEEEEeccccccCC-CcHHH---HHHH
Q 000607 100 WGDMGVDFWDGAT----WKEEMSKHEVLVMTPQILLD----GLRLSYFKLNMIKVLILDECHHARGK-HQYAC---IMTE 167 (1396)
Q Consensus 100 ~G~~~~~~~~~~~----~~~~~~~~~ViV~T~q~L~~----~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~---im~~ 167 (1396)
.+.+... .... ...+-.+..++..||+.... -+.++..+-+.++++|+||||+.... |.++- -+-.
T Consensus 92 NSKlSt~--ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~ 169 (641)
T KOG0352|consen 92 NSKLSTV--ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS 169 (641)
T ss_pred cchhhHH--HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhh
Confidence 2222111 1111 12222367899999976442 22234445567899999999998843 22221 1111
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
+++.....| -+.||||... ++.++|..-.. |+..+. .|..-.+..
T Consensus 170 -----LRS~~~~vp-wvALTATA~~--------~VqEDi~~qL~-L~~PVA--------------------iFkTP~FR~ 214 (641)
T KOG0352|consen 170 -----LRSVCPGVP-WVALTATANA--------KVQEDIAFQLK-LRNPVA--------------------IFKTPTFRD 214 (641)
T ss_pred -----HHhhCCCCc-eEEeecccCh--------hHHHHHHHHHh-hcCcHH--------------------hccCcchhh
Confidence 222234444 4688988744 22222221111 111000 011000000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.++-. ..+
T Consensus 215 NLFYD--~~~---------------------------------------------------------------------- 222 (641)
T KOG0352|consen 215 NLFYD--NHM---------------------------------------------------------------------- 222 (641)
T ss_pred hhhHH--HHH----------------------------------------------------------------------
Confidence 00000 000
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
++++.+-...|..+... .++. ..| .++-...-..++||+|.+|..++.++-.|
T Consensus 223 -----K~~I~D~~~~LaDF~~~----~LG~-----------~~~-------~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 223 -----KSFITDCLTVLADFSSS----NLGK-----------HEK-------ASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred -----HHHhhhHhHhHHHHHHH----hcCC-----------hhh-------hhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 00111111111110000 0000 000 00000123568899999999999999998
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhh
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~G 487 (1396)
.. .|+.....|.. +...+|.++-++.-+|++.||+||...+.|+|-|++..||++|.|.|+..|.|-.|
T Consensus 276 ~~-----~Gi~A~AYHAG------LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESG 344 (641)
T KOG0352|consen 276 EI-----AGIPAMAYHAG------LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESG 344 (641)
T ss_pred hh-----cCcchHHHhcc------cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhcc
Confidence 85 47776666654 68889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC--CcEEEEEecCCcc
Q 000607 488 RARMQN--SDYLLMVKSGDST 506 (1396)
Q Consensus 488 RA~R~g--s~~i~lv~~~~~~ 506 (1396)
||||.| |.+-+.+.+.|..
T Consensus 345 RAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 345 RAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ccccCCCccceeeeecccchH
Confidence 999998 4444555555443
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=189.63 Aligned_cols=380 Identities=15% Similarity=0.165 Sum_probs=224.6
Q ss_pred cchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC--eE
Q 000607 21 FARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL--KV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~--~v 96 (1396)
.+-|||.+.++.++++ .+++++++|.|||+.|+.+...+.. .. ..+|+||. .|..-|++.++++++. .+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-----Ew-plliVcPA-svrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-----EW-PLLIVCPA-SVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-----cC-cEEEEecH-HHhHHHHHHHHHhcccccce
Confidence 3789999999999984 6999999999999999887665421 12 38999999 7779999999999863 44
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH-HHHHHHHHhhccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA-CIMTEFYHRLLET 175 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~im~~f~~~~~~~ 175 (1396)
.++.+....- ........|.|++++.+..+ +..+.-..+.++||||+|++++...-+ +......
T Consensus 271 ~vv~~~~D~~-------~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dll------ 335 (689)
T KOG1000|consen 271 FVVDKSSDPL-------PDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLL------ 335 (689)
T ss_pred EEEecccCCc-------cccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHH------
Confidence 4444432111 11222467999999987643 224445569999999999998643222 1111111
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc-ccccCCcceeEeccCCCCc--hhhHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS-NFIPFSTAKFKFYKYDEIP--HALYTH 252 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~-~~~~~~~~~~~~y~~~~~~--~~~~~~ 252 (1396)
...-++++||+||..+... ++..+|..+...+....+ ++. .|+.. ......|+..... .++..-
T Consensus 336 --k~akhvILLSGTPavSRP~----elytqi~avd~tlfp~f~------efa~rYCd~-k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 336 --KVAKHVILLSGTPAVSRPS----ELYTQIRAVDHTLFPNFH------EFAIRYCDG-KQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred --HHhhheEEecCCcccCCch----hhhhhhhhhcccccccHH------HHHHHhcCc-cccceeeecCCCCCHHHHHHH
Confidence 2345899999999876643 234444444444433221 111 12111 1111223322211 111110
Q ss_pred HHHH--HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 253 LADE--LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 253 l~~~--l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
+.+. +..+.......| .+- ..+......+..+.....
T Consensus 403 L~k~lMIRRlK~dvL~qL-------------------------------PpK----------rr~Vv~~~~gr~da~~~~ 441 (689)
T KOG1000|consen 403 LFKRLMIRRLKADVLKQL-------------------------------PPK----------RREVVYVSGGRIDARMDD 441 (689)
T ss_pred HHHHHHHHHHHHHHHhhC-------------------------------Ccc----------ceEEEEEcCCccchHHHH
Confidence 1000 011111110000 000 000000000000000000
Q ss_pred HHH--------HHHHH-HHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh---hcCCCCeeEEEEechHH
Q 000607 331 IIK--------KFGSD-ASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE---YRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 331 ~~~--------~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~---~~~~~~~k~IIFv~~r~ 398 (1396)
+.. +.++. ....+-.+. . .-..|+....+.|.. +...+..|.+||+....
T Consensus 442 lv~~a~~~t~~~~~e~~~~~l~l~y~-~-----------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 442 LVKAAADYTKVNSMERKHESLLLFYS-L-----------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred HHHHhhhcchhhhhhhhhHHHHHHHH-H-----------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 000 00000 000000000 0 003466666666655 24567889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC-eeE-EEEecccccccCCCcccEEEEeCCC
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL-VNV-IVATSILEEGLDVQSCNLVIMFDPS 476 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~-~nv-LVaTsvleeGiDIp~~~lVI~fD~p 476 (1396)
..+.|...+.+ +++....+.|++ +..+|....+.|+..+ +.| +++--.++.|+++.+.++||+..++
T Consensus 504 vLd~Iq~~~~~-----r~vg~IRIDGst------~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 504 VLDTIQVEVNK-----RKVGSIRIDGST------PSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred HHHHHHHHHHH-----cCCCeEEecCCC------CchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec
Confidence 99999999986 477788899986 7789999999999754 444 4455678999999999999999999
Q ss_pred CcHHHHHHhhhcccCCCC----cEEEEEecCCc
Q 000607 477 RTVCSFIQSRGRARMQNS----DYLLMVKSGDS 505 (1396)
Q Consensus 477 ~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~ 505 (1396)
||+.-.+|.-.||+|.|+ .++.++..+..
T Consensus 573 wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~ 605 (689)
T KOG1000|consen 573 WNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTA 605 (689)
T ss_pred CCCceEEechhhhhhccccceeeEEEEEecCch
Confidence 999999999999999995 34556655543
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=186.85 Aligned_cols=112 Identities=41% Similarity=0.634 Sum_probs=88.3
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
|||||||||||+++|+.|||.+||+.+++.||.+|+.+|||.+|+.+|+++||++|++..+......+..+.+.......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999999999998776665554442222111110
Q ss_pred -C-CCCCcccccCCChhhHHHHHHHhhheeeecC
Q 000607 1267 -G-STFGWESVTSFPKALGDIIESLAGAIFVDSG 1298 (1396)
Q Consensus 1267 -~-~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g 1298 (1396)
. ...........+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0 0011112345789999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-17 Score=182.99 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=115.8
Q ss_pred ccHHHHHHHHHHhhhc-CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc
Q 000607 368 LTEKIVCLIESLLEYR-GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~ 446 (1396)
.|.|+++|.+-|.-.. .+...+.|||.+.-...+.+...|.+ .|+.|.-++|+ |++..|..+++.|.+
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k-----aGfscVkL~Gs------Ms~~ardatik~F~n 686 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK-----AGFSCVKLVGS------MSPAARDATIKYFKN 686 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc-----cCceEEEeccC------CChHHHHHHHHHhcc
Confidence 4789999998876642 34567899999999999999988886 49999999997 899999999999987
Q ss_pred C-Cee-EEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcchHHHHHHHHHHHHH
Q 000607 447 G-LVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDSTTQSRLENYLASGNK 520 (1396)
Q Consensus 447 g-~~n-vLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~~~~~i~~~~~~e~~ 520 (1396)
. +|. .|++-.+++..+|+..++.|...|+.||+..-.|+..|.+|.|+ +++.|+-+. ...++|-++++....
T Consensus 687 d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKKa~ 764 (791)
T KOG1002|consen 687 DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKKAN 764 (791)
T ss_pred CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHHhh
Confidence 5 455 46677889999999999999999999999999999999999996 566665544 344555555555555
Q ss_pred HHH
Q 000607 521 MRK 523 (1396)
Q Consensus 521 m~~ 523 (1396)
|-.
T Consensus 765 mih 767 (791)
T KOG1002|consen 765 MIH 767 (791)
T ss_pred hhh
Confidence 543
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=207.07 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++.+.+. ...+..+||||+++..++.|+++|+. .+++...++|.. .++++..+.+.|+.|
T Consensus 426 ~~~k~~av~~~i~~~-~~~g~PVLVgt~Sie~sE~ls~~L~~-----~gi~h~vLnak~------~q~Ea~iia~Ag~~G 493 (896)
T PRK13104 426 QADKFQAIIEDVREC-GVRKQPVLVGTVSIEASEFLSQLLKK-----ENIKHQVLNAKF------HEKEAQIIAEAGRPG 493 (896)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH-----cCCCeEeecCCC------ChHHHHHHHhCCCCC
Confidence 356888888877664 35788999999999999999999997 489999999984 889999999999999
Q ss_pred CeeEEEEecccccccCCCcc--------------------------------------cEEEEeCCCCcHHHHHHhhhcc
Q 000607 448 LVNVIVATSILEEGLDVQSC--------------------------------------NLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.|+|||+++++|+||.-- =+||--..+.|.+---|-+|||
T Consensus 494 --~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRa 571 (896)
T PRK13104 494 --AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRA 571 (896)
T ss_pred --cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccc
Confidence 499999999999999632 2688888999999999999999
Q ss_pred cCCC--CcEEEEEe
Q 000607 490 RMQN--SDYLLMVK 501 (1396)
Q Consensus 490 ~R~g--s~~i~lv~ 501 (1396)
||.| |..-.+++
T Consensus 572 GRQGDPGss~f~lS 585 (896)
T PRK13104 572 GRQGDPGSSRFYLS 585 (896)
T ss_pred ccCCCCCceEEEEE
Confidence 9998 44444444
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=209.31 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|...+++.+.... ..+..+||||+++..++.|++.|.+ .+++...++|.. ..+++..+.++++.|
T Consensus 422 ~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~-----~gi~~~~Lna~~------~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 422 LDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE-----AGIPHAVLNAKN------HAKEAEIIMNAGQRG 489 (796)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH-----CCCCeeEecCCc------HHHHHHHHHhcCCCc
Confidence 3568888888887642 4788999999999999999999997 488999999974 666666666666666
Q ss_pred CeeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 448 LVNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
. |+|||+++++|+||+ ++. +||+++.|.|.+.|.|++||+||.| |....+++-+
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 5 999999999999995 788 9999999999999999999999998 5667777644
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-20 Score=201.46 Aligned_cols=122 Identities=29% Similarity=0.386 Sum_probs=106.6
Q ss_pred HHHHHHhcccCccc----cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccc
Q 000607 979 IKVLEAITTKKCQE----DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIR 1054 (1396)
Q Consensus 979 ~~l~~AlT~~s~~~----~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~ 1054 (1396)
.++.+|+|..+... ..+||||||||||||.+++|.++|.+||+.+||.||.+|+.+|+|.+-+++|..+|+++|+.
T Consensus 290 rlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li 369 (533)
T KOG1817|consen 290 RLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLI 369 (533)
T ss_pred HHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhh
Confidence 78889999998762 23899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhcCcc
Q 000607 1055 TESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIK 1129 (1396)
Q Consensus 1055 ~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l~~~ 1129 (1396)
+ +|+++ ..+..+.|.+||+|||+|||.|+|+|++.+.+|++.+-.+
T Consensus 370 ~-n~~~k----------------------------~~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~P 415 (533)
T KOG1817|consen 370 T-NFDLK----------------------------DFQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFP 415 (533)
T ss_pred h-Ccchh----------------------------hhhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Confidence 3 11111 1223678999999999999999999999999999887533
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=218.31 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=120.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL--- 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~--- 94 (1396)
.+.|-++|++++..+.++ +++|++|||+|||.+|-.+|..-.. .+.++++..|.++|.+|.+..+...++-
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----DGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----cCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 345899999999888887 7999999999999999987764322 3556999999999999999999876652
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
.+++++|+..++. ++.++|||.++|.+++.++-..+.++..|||||+|-+.+.. ++..++..-
T Consensus 192 ~vGL~TGDv~IN~-----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~e------RG~VWEE~I 254 (1041)
T COG4581 192 MVGLMTGDVSINP-----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRE------RGVVWEEVI 254 (1041)
T ss_pred hccceecceeeCC-----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccc------cchhHHHHH
Confidence 4799999876653 68999999999999999998888999999999999988642 111111111
Q ss_pred CCCCCCCeEEEEeccCCCC
Q 000607 175 TGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~ 193 (1396)
....+.-++++||||..+.
T Consensus 255 i~lP~~v~~v~LSATv~N~ 273 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNA 273 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCH
Confidence 1123445799999999774
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=209.45 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=119.4
Q ss_pred ccccccCCCcccchHHHHHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 10 TTEEVSADTLPFARNYQLEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 10 ~~~~~~~~~~~~~r~yQ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
..++.+..-...||+||+++++.++++ +.=+.|..|+|||++++-+...++ ..++|||||+.+|..|.
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-------~~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-------AARILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-------hhheEeecchHHHHHHH
Confidence 344455555667999999999999984 377888999999999987776653 36799999999999998
Q ss_pred HHHHHHhc--CCeEEEEeCCCCcccCCcc-------------------chHHhh--ccCcEEEecHHHHHHhHhhcCccc
Q 000607 85 AEAIKMHT--DLKVGKYWGDMGVDFWDGA-------------------TWKEEM--SKHEVLVMTPQILLDGLRLSYFKL 141 (1396)
Q Consensus 85 ~~~i~~~~--~~~v~~~~G~~~~~~~~~~-------------------~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l 141 (1396)
.++..... +++...++++..+..-... .|...- .+--||++|||.+...-.....-+
T Consensus 223 lrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 223 LREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 88887654 6677777777554321111 121111 145699999999987766555667
Q ss_pred cceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 142 ~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..++|||.||||+..+-+-...--..|... .....-+..+.|-|||||-.
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~v-Hs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRV-HSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceee-cCcchhHHHHhhhcccCchh
Confidence 899999999999998642211111222211 00011123568899999964
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=189.57 Aligned_cols=443 Identities=18% Similarity=0.211 Sum_probs=249.9
Q ss_pred ccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-C
Q 000607 20 PFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~ 93 (1396)
-.+.+||...+.+..+ | |.|+++++|.|||..++.++.++++.-.-. | ..|+++|...| ..|+++|.+|+ .
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIw-G-PFLVVtpaStL-~NWaqEisrFlP~ 642 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIW-G-PFLVVTPASTL-HNWAQEISRFLPS 642 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCC-C-ceEEeehHHHH-hHHHHHHHHhCcc
Confidence 3479999999998775 5 999999999999999999999888743322 3 37899999766 88999999998 5
Q ss_pred CeEEEEeCCCCc-----ccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH-HHHHH
Q 000607 94 LKVGKYWGDMGV-----DFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA-CIMTE 167 (1396)
Q Consensus 94 ~~v~~~~G~~~~-----~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~im~~ 167 (1396)
+++.-|.|+.+. .+|.....-......+|+|+|||.+... ..++.--.|.++|+|||+.++...+-+ +-+-.
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSsS~RWKtLLs 720 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLS 720 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhhhhHHHHHhh
Confidence 899999998542 3555544444566899999999987632 234444579999999999988643211 11122
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
| +....|+||+||+.+. +.+|.++|+-..-+ .....++..+...-.+..-.-.. .+.
T Consensus 721 F----------~cRNRLLLTGTPIQNs-----------MqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~-tln 778 (1185)
T KOG0388|consen 721 F----------KCRNRLLLTGTPIQNS-----------MQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT-TLN 778 (1185)
T ss_pred h----------hccceeeecCCccchH-----------HHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC-CcC
Confidence 2 2345799999999864 44455555432221 11223333332221111100000 011
Q ss_pred hhhHHHHHHHHHHHHHHHHh---------hhhh---h----chhhH--HHH-HHHHH------------HHHHHHH--HH
Q 000607 247 HALYTHLADELAMIELKHTR---------SLEN---L----DLNEA--QAE-LIRKK------------VSKINST--LL 293 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~---------~l~~---~----~~~~~--~~~-~~~~~------------~~~~~~~--~~ 293 (1396)
.. -.+.|..+.+++.. .|-. . ++..+ .+. ..+.. +++.++. ..
T Consensus 779 eq----qL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLF 854 (1185)
T KOG0388|consen 779 EQ----QLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLF 854 (1185)
T ss_pred HH----HHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHH
Confidence 11 11112222222211 1100 0 00000 000 00111 1111100 00
Q ss_pred -----------HHHHhHHH---------------HHHHHHHHHh-----------------hccccchh---------hh
Q 000607 294 -----------YCLSELGV---------------WLALKAAETI-----------------SCYESDFF---------AW 321 (1396)
Q Consensus 294 -----------~~~~~lg~---------------~~a~~~~~~~-----------------~~~~~~~~---------~~ 321 (1396)
.+.+.+|. ..+..+.+.. -..+..+. ..
T Consensus 855 er~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~ 934 (1185)
T KOG0388|consen 855 ERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKY 934 (1185)
T ss_pred hhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeecc
Confidence 00001110 0000000000 00000000 00
Q ss_pred hh-cccchH----HHHH--------------HHHHHHHHHHHHh----ccCC--CccccC--CCCcc------------c
Q 000607 322 EQ-LDGFGE----TIIK--------------KFGSDASQALVTY----VPSG--AEWSIG--DDSKF------------N 362 (1396)
Q Consensus 322 ~~-~~~~~~----~~~~--------------~~l~~~~~~l~~~----~~~~--~~~~~~--~~~~~------------~ 362 (1396)
|. .+...+ ...+ +.+......+..+ .+.. +...+. .++++ .
T Consensus 935 G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~ 1014 (1185)
T KOG0388|consen 935 GGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTT 1014 (1185)
T ss_pred CCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccc
Confidence 00 000111 1111 1111100111110 0000 000000 00000 0
Q ss_pred CC------CCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 363 LD------SGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 363 ~~------~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
+. .-..|.|+..|-++|...+ ..+.|+++|.+--.+...+.++|.- .++....+.|++ ...+
T Consensus 1015 i~~Ppm~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~y-----r~Y~ylRLDGSs------k~~d 1082 (1185)
T KOG0388|consen 1015 IYVPPMNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVY-----RGYTYLRLDGSS------KASD 1082 (1185)
T ss_pred eecCcHHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHh-----hccceEEecCcc------hhhH
Confidence 00 0113678888888888764 5789999999988888888888874 588888999985 7789
Q ss_pred HHHHHHHHhcCCe-eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCc
Q 000607 437 QNEIVEEFRRGLV-NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDS 505 (1396)
Q Consensus 437 r~~~l~~Fr~g~~-nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~ 505 (1396)
|.+++.+|+..++ -.|++|.+++-|||+.+++.||+||..||+..-.|.+.||+|-|+ .++-++.+|..
T Consensus 1083 Rrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1083 RRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred HHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9999999998765 568899999999999999999999999999999999999999985 46667776643
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-17 Score=200.51 Aligned_cols=404 Identities=15% Similarity=0.101 Sum_probs=222.6
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|++.|.-..-.. ...-|..|.||+|||++|.+++.- ..+ .++.+-+++||..|+.|.++.+.. ++|+++
T Consensus 80 ~~~~dvQlig~l~L-~~G~Iaem~TGeGKTLva~lpa~l--~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv 153 (830)
T PRK12904 80 MRHFDVQLIGGMVL-HEGKIAEMKTGEGKTLVATLPAYL--NAL---TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSV 153 (830)
T ss_pred CCCCccHHHhhHHh-cCCchhhhhcCCCcHHHHHHHHHH--HHH---cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeE
Confidence 34666777665433 344699999999999999986641 112 344588999999999998888776 458999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhcC------ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLSY------FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~~------~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.+.|+++... +...-.++|+++|+..| .+.|+... .....+.++|+|||+.+.=+
T Consensus 154 ~~i~~~~~~~e------r~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID----------- 216 (830)
T PRK12904 154 GVILSGMSPEE------RREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID----------- 216 (830)
T ss_pred EEEcCCCCHHH------HHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec-----------
Confidence 99999865431 22223589999999999 78887654 23677999999999988632
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccCh-----------hhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCASE-----------SVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~~-----------~~l~~~~~~~~~~~ 237 (1396)
....|-| +|+.+.... +....+..+...|... -|.+... ..+..+... .
T Consensus 217 -------eArtpLi--iSg~~~~~~------~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~----~ 277 (830)
T PRK12904 217 -------EARTPLI--ISGPAEDSS------ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI----E 277 (830)
T ss_pred -------cCCCcee--eECCCCccc------HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC----c
Confidence 1234533 344332111 4555666666666321 1221000 000000000 0
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh-h------chhhHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN-L------DLNEAQAELIRKKVSKINSTLLYCLSELGVW--LALK 306 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~--~a~~ 306 (1396)
-.|+... .+....+...|.... .+-..++.. . .++.+.. . -..| +-+.
T Consensus 278 ~ly~~~~--~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~--~-----------------gr~ws~GLHQ 336 (830)
T PRK12904 278 NLYDPEN--IALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLM--P-----------------GRRYSDGLHQ 336 (830)
T ss_pred cccChhh--hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccC--C-----------------CCccchHHHH
Confidence 0011000 000000011110000 000000000 0 0000000 0 0000 0011
Q ss_pred HHHHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccCC---CCCccHH
Q 000607 307 AAETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNLD---SGLLTEK 371 (1396)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~s~K 371 (1396)
+.+.-..............-..+.+.+.|- ......+...+.-+. ..++.+.+ .+.. ......|
T Consensus 337 aiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v-v~IPtnkp~~r~d~~d~i~~t~~~K 415 (830)
T PRK12904 337 AIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDV-VVIPTNRPMIRIDHPDLIYKTEKEK 415 (830)
T ss_pred HHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCE-EEcCCCCCeeeeeCCCeEEECHHHH
Confidence 111100000000000000000011111110 011222333221110 11111111 1111 1223578
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeE
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNV 451 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nv 451 (1396)
...+++.+.+.. ..+.++||||+++..++.|++.|.. .+++...++|. +.+|+..+.+|+.|...|
T Consensus 416 ~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~-----~gi~~~vLnak--------q~eREa~Iia~Ag~~g~V 481 (830)
T PRK12904 416 FDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKK-----AGIPHNVLNAK--------NHEREAEIIAQAGRPGAV 481 (830)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH-----CCCceEeccCc--------hHHHHHHHHHhcCCCceE
Confidence 888988887632 4678899999999999999999997 48899999884 468899999999999999
Q ss_pred EEEecccccccCCCcc--------------------------------------cEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 452 IVATSILEEGLDVQSC--------------------------------------NLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 452 LVaTsvleeGiDIp~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+|||+++++|+||+-- =+||--..+.|.+---|-+|||||.|
T Consensus 482 tIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQG 561 (830)
T PRK12904 482 TIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQG 561 (830)
T ss_pred EEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCC
Confidence 9999999999999764 26888889999999999999999998
Q ss_pred --CcEEEEEe
Q 000607 494 --SDYLLMVK 501 (1396)
Q Consensus 494 --s~~i~lv~ 501 (1396)
|..-.+++
T Consensus 562 dpGss~f~lS 571 (830)
T PRK12904 562 DPGSSRFYLS 571 (830)
T ss_pred CCCceeEEEE
Confidence 44445554
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=187.75 Aligned_cols=311 Identities=18% Similarity=0.188 Sum_probs=195.4
Q ss_pred CCcEEEEEeCCcccHHHHHHHHHH---hcC---CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCcc
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKM---HTD---LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140 (1396)
Q Consensus 67 ~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~---~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~ 140 (1396)
+....+|+-|+++|++|....|++ ++. ++..++.|+... ..+-....++.+|+|.||+++++.+..+.+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~----r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLK----RTQCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHh----HHHHHHhhcCceeeecCchhhhhhhhcccee
Confidence 456799999999999998875554 442 233345554221 2334555568999999999999999999999
Q ss_pred ccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCC--CCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEE
Q 000607 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD--SNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVY 218 (1396)
Q Consensus 141 l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~--~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~ 218 (1396)
+.+..++|+|||+-+.+. -|...+.+|... +.... ..+++....|||...-.... .-|..|+-...
T Consensus 361 lt~crFlvlDead~lL~q-gy~d~I~r~h~q-ip~~tsdg~rlq~~vCsatlh~feVkk----------~~ervmhfptw 428 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQ-GYDDKIYRFHGQ-IPHMTSDGFRLQSPVCSATLHIFEVKK----------VGERVMHFPTW 428 (725)
T ss_pred eeeeEEEEecchhhhhhc-ccHHHHHHHhcc-chhhhcCCcccccceeeeEEeEEEeee----------hhhhhccCcee
Confidence 999999999999999874 455555555432 22111 24566777888864321111 01222222111
Q ss_pred e-ccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000607 219 T-CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLS 297 (1396)
Q Consensus 219 ~-~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1396)
. .+-++.+..-++ .......+ .
T Consensus 429 VdLkgeD~vpetvH---hvv~lv~p------------------------------------------------------~ 451 (725)
T KOG0349|consen 429 VDLKGEDLVPETVH---HVVKLVCP------------------------------------------------------S 451 (725)
T ss_pred Eecccccccchhhc---cceeecCC------------------------------------------------------c
Confidence 1 000000000000 00000000 0
Q ss_pred hHHHHHHHHHHHHhhcc---ccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHH
Q 000607 298 ELGVWLALKAAETISCY---ESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVC 374 (1396)
Q Consensus 298 ~lg~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~ 374 (1396)
.-|.||..+ +.+.-. ..++. ..+...+ ...|..+
T Consensus 452 ~d~sw~~lr--~~i~td~vh~kdn~----------------------------------~pg~~Sp-----e~~s~a~-- 488 (725)
T KOG0349|consen 452 VDGSWCDLR--QFIETDKVHTKDNL----------------------------------LPGQVSP-----ENPSSAT-- 488 (725)
T ss_pred cCccHHHHh--hhhccCCccccccc----------------------------------ccccCCC-----CChhhhh--
Confidence 011222210 000000 00000 0011111 1112222
Q ss_pred HHHHHhh-h-----cCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 375 LIESLLE-Y-----RGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 375 L~~~L~~-~-----~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
.+|+. | +...-.++||||.++..++-|.+++.+... ..+.|.++||+. .+.+|.+.++.|+.++
T Consensus 489 --kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg--~~~scvclhgDr------kP~Erk~nle~Fkk~d 558 (725)
T KOG0349|consen 489 --KILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG--KHYSCVCLHGDR------KPDERKANLESFKKFD 558 (725)
T ss_pred --HHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC--ccceeEEEecCC------ChhHHHHHHHhhhhcC
Confidence 22221 1 224567999999999999999999997522 368999999995 7899999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
++.||||+|+++||||...-.+|+.-+|.....|+||+||+||+. +-.|.++...
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 999999999999999999999999999999999999999999987 6777777633
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=200.29 Aligned_cols=152 Identities=19% Similarity=0.163 Sum_probs=116.8
Q ss_pred ccchHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+.+-.+|++++....+|+ +.|++.|.+|||++|-.+|.- ++ ..+.|+++-.|-++|-+|-++.|+.-++ .+++
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq----~h~TR~iYTSPIKALSNQKfRDFk~tF~-DvgL 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQ----KHMTRTIYTSPIKALSNQKFRDFKETFG-DVGL 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HH----hhccceEecchhhhhccchHHHHHHhcc-ccce
Confidence 347789999999999995 889999999999999887652 22 2467899999999999999999997654 3558
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
++|+..+. ..+..+|||.++|.++|-+|---+.++..+||||+|-+.+-. ++..++..-.-..
T Consensus 370 lTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~e------RGvVWEEViIMlP 432 (1248)
T KOG0947|consen 370 LTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVE------RGVVWEEVIIMLP 432 (1248)
T ss_pred eecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccc------ccccceeeeeecc
Confidence 99986554 268899999999999999887667889999999999886531 1222111111123
Q ss_pred CCCeEEEEeccCCCCC
Q 000607 179 NLPRIFGMTASPIKSK 194 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~ 194 (1396)
+.-.+++||||..+..
T Consensus 433 ~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTL 448 (1248)
T ss_pred ccceEEEEeccCCChH
Confidence 4457999999987743
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=200.98 Aligned_cols=414 Identities=16% Similarity=0.165 Sum_probs=240.2
Q ss_pred cchHHHHHHHHHHhc---C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK---Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~---~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+++||...+++... + |.|++.+||.|||...+.+|.++.+..+..+. -+|+||+..|+. |..+|..+. .+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP--~LvivPlstL~N-W~~Ef~kWaPSv 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP--FLIIVPLSTLVN-WSSEFPKWAPSV 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC--eEEeccccccCC-chhhccccccce
Confidence 489999999998875 3 79999999999999999999988876544333 689999988865 666666554 57
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcH-HHHHHHHHHhhc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQY-ACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~~im~~f~~~~~ 173 (1396)
..+.|.|..... +.-.-.....+.+|+++|++-+.. ....+.--+|.++|+||.|++++.+.- ...+..+|
T Consensus 471 ~~i~YkGtp~~R--~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y---- 542 (1157)
T KOG0386|consen 471 QKIQYKGTPQQR--SGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHY---- 542 (1157)
T ss_pred eeeeeeCCHHHH--hhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHHhhccc----
Confidence 788888863221 111112222589999999998875 334444557899999999999975421 11122222
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
..++.++||+||..++-.. +-.|-+.+-..|+. ....+..+...|-...- +......+- -
T Consensus 543 -----~~q~RLLLTGTPLQN~LpE--------LWaLLNFlLP~IFn--S~~~FeqWFN~PFantG--ek~eLteEE---t 602 (1157)
T KOG0386|consen 543 -----RAQRRLLLTGTPLQNNLPE--------LWALLNFLLPNIFN--SCKAFEQWFNQPFANTG--EKVELTEEE---T 602 (1157)
T ss_pred -----cchhhhhhcCChhhhccHH--------HHHHHHHhccchhh--hHhHHHHHhhhhhhhcC--CcccccchH---H
Confidence 4578899999999876432 22222222222222 22334444444332111 111111111 1
Q ss_pred HHHHHHHHHHHHhhhhhhchhh--HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc-chH
Q 000607 254 ADELAMIELKHTRSLENLDLNE--AQAELIR-KKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG-FGE 329 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (1396)
.-.+..+++.+..++-+...+. ..++... ..++. ++..|.-. ++.......... .+. ...
T Consensus 603 lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC----------~mSalQq~----lY~~m~~~g~l~--~d~~~g~ 666 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKC----------DMSALQQS----LYKQMQNKGQLL--KDTAKGK 666 (1157)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhhe----------ehhhhhHh----hhHHHHhCCCCC--cCchhcc
Confidence 1222333333222221100000 0000000 00000 00000000 000000000000 000 000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cCCCCcccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWS-IGDDSKFNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.. ..-+.+..-.++..|...-.+. ...+..... +.--.+.|+..|-.+|-... ..+.+++.|++.......+..
T Consensus 667 ~g-~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEd 744 (1157)
T KOG0386|consen 667 KG-YKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILED 744 (1157)
T ss_pred cc-chhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHH
Confidence 00 0111122222333332211110 000111100 11123678888877777753 578999999999888888888
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcHHHH
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~y 482 (1396)
+|.- .+++...+.|.+ ...+|-..++.|..-. ...|.+|..++-|+|++.++.||.||..||+..+
T Consensus 745 yL~~-----~~~kYlRLDG~T------K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d 813 (1157)
T KOG0386|consen 745 YLQI-----REYKYLRLDGQT------KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQD 813 (1157)
T ss_pred HHhh-----hhhheeeecCCc------chhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhH
Confidence 8873 578888999986 7789999999998744 4577899999999999999999999999999999
Q ss_pred HHhhhcccCCCC
Q 000607 483 IQSRGRARMQNS 494 (1396)
Q Consensus 483 iQr~GRA~R~gs 494 (1396)
.|+..||.|.|+
T Consensus 814 ~qaqdrahrigq 825 (1157)
T KOG0386|consen 814 LQAQDRAHRIGQ 825 (1157)
T ss_pred HHHHHHHHHhhc
Confidence 999999999996
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-16 Score=194.34 Aligned_cols=132 Identities=24% Similarity=0.343 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..++..|++.|..+. ..+.++||||+++..++.|.+.|.+. ++++.++||. |++.+|.+++++|+.|+
T Consensus 425 ~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~------~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSE------IDTLERVEIIRDLRLGE 492 (655)
T ss_pred cchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCC------CCHHHHHHHHHHHhcCC
Confidence 446667777777653 46789999999999999999999974 7899999987 58999999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeC-----CCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHH
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFD-----PSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD-----~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~ 512 (1396)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||.. |+++++++..+......+.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999998 7999999999999999975 5677776655444444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=183.81 Aligned_cols=163 Identities=24% Similarity=0.220 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|++||.++++.+.++ |+++++|||+|||+++++.+.......+...+.+++|++|+++|+.|+.+.++.+. +.
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~ 98 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNL 98 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCc
Confidence 345899999999999986 89999999999999987754433222211356789999999999999999888764 67
Q ss_pred eEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
++..++|+.... .+.... .+++|+|+||+.+.+.+.++...+.+++++|+||||++.+. .+...+..+...
T Consensus 99 ~~~~~~~~~~~~-----~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~-~~~~~~~~~~~~-- 170 (203)
T cd00268 99 KVVVIYGGTSID-----KQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM-GFEDQIREILKL-- 170 (203)
T ss_pred eEEEEECCCCHH-----HHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc-ChHHHHHHHHHh--
Confidence 888888875432 122233 37899999999999999888888899999999999998843 445555544432
Q ss_pred cCCCCCCCeEEEEeccCCC
Q 000607 174 ETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~ 192 (1396)
....++++++||||..
T Consensus 171 ---l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 171 ---LPKDRQTLLFSATMPK 186 (203)
T ss_pred ---CCcccEEEEEeccCCH
Confidence 1336789999999964
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=195.01 Aligned_cols=366 Identities=19% Similarity=0.157 Sum_probs=219.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+.+-|+|..++..+-++ .++|.+-|.+|||.+|-.+|..-+. .+.|+++-.|-++|-+|-++++...++ .||+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-----~kQRVIYTSPIKALSNQKYREl~~EF~-DVGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-----EKQRVIYTSPIKALSNQKYRELLEEFK-DVGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-----hcCeEEeeChhhhhcchhHHHHHHHhc-ccce
Confidence 34789999999877776 6999999999999999987653322 467899999999999999999987653 5788
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
.+|+...+. ++--+|||.++|.++|-+|---+..+.-+||||.|-+.+.. ++..+...-...+
T Consensus 202 MTGDVTInP-----------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE------RGVVWEETIIllP 264 (1041)
T KOG0948|consen 202 MTGDVTINP-----------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE------RGVVWEETIILLP 264 (1041)
T ss_pred eecceeeCC-----------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc------cceeeeeeEEecc
Confidence 899865442 57789999999999999998889999999999999998643 2222221111234
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC--CCCchhhHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY--DEIPHALYTHLADE 256 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~--~~~~~~~~~~l~~~ 256 (1396)
+.-|.+.||||..+.. ++.+-|+.+..--.-.+||- |.|+|-...+ |.. ..+.--+..
T Consensus 265 ~~vr~VFLSATiPNA~------qFAeWI~~ihkQPcHVVYTd--------yRPTPLQHyi-fP~ggdGlylvVDe----- 324 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNAR------QFAEWICHIHKQPCHVVYTD--------YRPTPLQHYI-FPAGGDGLYLVVDE----- 324 (1041)
T ss_pred ccceEEEEeccCCCHH------HHHHHHHHHhcCCceEEeec--------CCCCcceeee-ecCCCCeeEEEEec-----
Confidence 5567889999997743 33333433333222234442 3333332221 111 000000000
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
..++. ..-.
T Consensus 325 -------------k~~Fr----------------------------------------------------------ednF 333 (1041)
T KOG0948|consen 325 -------------KGKFR----------------------------------------------------------EDNF 333 (1041)
T ss_pred -------------ccccc----------------------------------------------------------hHHH
Confidence 00000 0000
Q ss_pred HHHHHHHHHhccCCCccccCCC-Cc-ccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc---
Q 000607 337 SDASQALVTYVPSGAEWSIGDD-SK-FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL--- 411 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~--- 411 (1396)
..+.+.+...-..++....... -. .....+....-+.+++..+.+ .+...+|||+=++..++.++--+.++.
T Consensus 334 ~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~---~~~~PVIvFSFSkkeCE~~Alqm~kldfN~ 410 (1041)
T KOG0948|consen 334 QKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME---RNYLPVIVFSFSKKECEAYALQMSKLDFNT 410 (1041)
T ss_pred HHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh---hcCCceEEEEecHhHHHHHHHhhccCcCCC
Confidence 0011111110000000000000 00 000001112233444444433 466789999998888887776665431
Q ss_pred -------------------------CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCc
Q 000607 412 -------------------------PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQS 466 (1396)
Q Consensus 412 -------------------------p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~ 466 (1396)
|...++-+...-|-+-.+.|+-+--.+-+.--|+.|-+++|+||...+-|+|.|+
T Consensus 411 deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 411 DEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred hhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 0000111111112111223455555556666799999999999999999999999
Q ss_pred ccEEE----EeCCC----CcHHHHHHhhhcccCCC----CcEEEEEec
Q 000607 467 CNLVI----MFDPS----RTVCSFIQSRGRARMQN----SDYLLMVKS 502 (1396)
Q Consensus 467 ~~lVI----~fD~p----~s~~~yiQr~GRA~R~g----s~~i~lv~~ 502 (1396)
-.+|. -||-- -|.-.|||+.|||||.| |.+|+|+++
T Consensus 491 kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 491 KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred eeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 88887 35542 25678999999999998 578888864
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=198.33 Aligned_cols=347 Identities=22% Similarity=0.265 Sum_probs=215.2
Q ss_pred cchHHHHHHHH--HHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 21 FARNYQLEALE--NALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~--~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...+||.|.+. ..+++ |.|..+||+.|||++|-+++..-.-. .++.++++.|-+..+..-...+..+. |+
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~----~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC----RRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH----HhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 36788998874 45554 99999999999999999876543221 35679999999988888777777664 88
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
.|..|.|.-... ...+.-.|.|||.+.-..+.+.- .-+++.+.+||+||-|.+.+.+--. ++..+..+.
T Consensus 299 ~ve~y~g~~~p~--------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~-~lE~~l~k~ 369 (1008)
T KOG0950|consen 299 PVEEYAGRFPPE--------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA-ILELLLAKI 369 (1008)
T ss_pred cchhhcccCCCC--------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch-HHHHHHHHH
Confidence 998888765433 23346789999998766544322 2245678999999999999764322 222222211
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
+-......-+|+|||||..+ +..|+.+|++.+|+. +|.|.|-...+..... +...-...
T Consensus 370 ~y~~~~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t-------~fRPv~L~E~ik~G~~-i~~~~r~~ 428 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTT-------RFRPVPLKEYIKPGSL-IYESSRNK 428 (1008)
T ss_pred HHhccccceeEeeeecccCC-------------hHHHHHHhhhhheec-------ccCcccchhccCCCcc-cccchhhH
Confidence 11112233679999999987 456899999988876 2333222211111110 00000000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
. +..+ +.
T Consensus 429 ~---lr~i---------------------------------------a~------------------------------- 435 (1008)
T KOG0950|consen 429 V---LREI---------------------------------------AN------------------------------- 435 (1008)
T ss_pred H---HHHh---------------------------------------hh-------------------------------
Confidence 0 0000 00
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.... ..+.. .| +.++.+..+- ..++.++||||++|..++.++..+....|
T Consensus 436 ---------l~~~--------~~g~~----------dp--D~~v~L~tet-~~e~~~~lvfc~sk~~ce~~a~~~~~~vp 485 (1008)
T KOG0950|consen 436 ---------LYSS--------NLGDE----------DP--DHLVGLCTET-APEGSSVLVFCPSKKNCENVASLIAKKVP 485 (1008)
T ss_pred ---------hhhh--------hcccC----------CC--cceeeehhhh-hhcCCeEEEEcCcccchHHHHHHHHHHhh
Confidence 0000 00000 00 0011111110 12466799999999888777655543222
Q ss_pred CC------CC-----------------cee----eEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 413 RH------CT-----------------WKT----KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 413 ~~------~~-----------------~~~----~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.. .+ +.+ ..-.|..-.+.|++..+|+.+-..||+|-+.|++||+.+.-|++.|
T Consensus 486 k~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP 565 (1008)
T KOG0950|consen 486 KHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP 565 (1008)
T ss_pred HhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC
Confidence 10 00 000 0001111123578999999999999999999999999999999999
Q ss_pred cccEEEEeCC----CCcHHHHHHhhhcccCCC----CcEEEEEecCC
Q 000607 466 SCNLVIMFDP----SRTVCSFIQSRGRARMQN----SDYLLMVKSGD 504 (1396)
Q Consensus 466 ~~~lVI~fD~----p~s~~~yiQr~GRA~R~g----s~~i~lv~~~~ 504 (1396)
+..++|++-. ..+...|.|+.|||||.| +..++++...+
T Consensus 566 ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 566 ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred cceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 9999998754 446789999999999998 56788877654
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-18 Score=179.06 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---CeEEE
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LKVGK 98 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~~ 98 (1396)
.|+|.++++.+.++ |+++.+|||+|||+++...+.... .+ ....++++++|+++|+.|+.+.++.+.. .++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~--~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRL--QE-GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHH--HT-TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhh--cc-CCCceEEEEeeccccccccccccccccccccccccc
Confidence 48999999999975 799999999999999987554322 22 2445899999999999999999998864 58888
Q ss_pred EeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCC
Q 000607 99 YWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD 177 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~ 177 (1396)
++|+...+ ......+ .+++|+|+||+.|.+.+.++...+.++++|||||||++... .+...+....... ..
T Consensus 78 ~~~~~~~~----~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~---~~ 149 (169)
T PF00270_consen 78 LHGGQSIS----EDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRL---KR 149 (169)
T ss_dssp ESTTSCHH----HHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHS---HT
T ss_pred cccccccc----ccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHh---cC
Confidence 88875422 1122222 36999999999999999987667888999999999999976 4444444444321 11
Q ss_pred CCCCeEEEEeccCC
Q 000607 178 SNLPRIFGMTASPI 191 (1396)
Q Consensus 178 ~~~p~ilgLTATp~ 191 (1396)
...+++++|||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 22478999999995
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-16 Score=182.17 Aligned_cols=463 Identities=16% Similarity=0.127 Sum_probs=249.9
Q ss_pred cccchHHHHHHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHH--HHhc---CCCCcEEEEEeCCcccHHHHHHH
Q 000607 19 LPFARNYQLEALENALKQ------NTIVFLETGSGKTLIAIMLLRSYA--YLLR---KPSPFVAVFLVPKVVLVPQQAEA 87 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~--~~~~---~~~~k~vl~LvPt~~Lv~Q~~~~ 87 (1396)
...+-++|..++....-+ ..|+++++|.|||++.+.+|.+-- +..+ ......+|||||. .|+.||+.+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHH
Confidence 344799999999877742 599999999999998777664322 1221 1122359999999 899999999
Q ss_pred HHHhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHH----hHhhc----CccccceeEEEEecccccc
Q 000607 88 IKMHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLD----GLRLS----YFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 88 i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~----~l~~~----~~~l~~i~llI~DEaH~~~ 156 (1396)
+.+-. .++|.+|+|... .+.-.+.+..+||||+||....+ -+..+ .+.--.|+-||+||||.+.
T Consensus 402 v~~rl~~n~LsV~~~HG~n~-----r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNK-----REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHhhcceEEEEecCCcc-----ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 98765 489999999842 23345677899999999998876 12111 1222357899999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEec----------------
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC---------------- 220 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~---------------- 220 (1396)
+..+-......-+ ..-....|||||+.++.. +++.|-..|+..-+.-
T Consensus 477 N~~tq~S~AVC~L---------~a~~RWclTGTPiqNn~~--------DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~ 539 (901)
T KOG4439|consen 477 NSNTQCSKAVCKL---------SAKSRWCLTGTPIQNNLW--------DVYSLLRFLRCPPFGDLKQWKENIDNMSKGGA 539 (901)
T ss_pred ccchhHHHHHHHH---------hhcceeecccCccccchh--------HHHHHHHHhcCCCcchHHHHHHhccCccccch
Confidence 8654333322111 112368999999998754 3555555554443320
Q ss_pred -------------cChhhhcc---cccCCcceeE--eccCCCCchhhHHHHHHHHHHHHHHHHhhhhh----hchhh-HH
Q 000607 221 -------------ASESVLSN---FIPFSTAKFK--FYKYDEIPHALYTHLADELAMIELKHTRSLEN----LDLNE-AQ 277 (1396)
Q Consensus 221 -------------~~~~~l~~---~~~~~~~~~~--~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~----~~~~~-~~ 277 (1396)
+..+.+.. .+.-|...+. ...-..-....+..+...-..+.+++...-.. .++.. ..
T Consensus 540 ~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~ 619 (901)
T KOG4439|consen 540 NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNR 619 (901)
T ss_pred hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccch
Confidence 00001100 0111111111 11100001111221111111111221110000 00000 00
Q ss_pred H-------------HHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHh-hccccchhhhhhcccchHHHHHHHHHHHH
Q 000607 278 A-------------ELIRKK---VSKINSTLLYCLSELGVWLALKAAETI-SCYESDFFAWEQLDGFGETIIKKFGSDAS 340 (1396)
Q Consensus 278 ~-------------~~~~~~---~~~~~~~~~~~~~~lg~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (1396)
. ...... -.+.+..++..+--|...|.+-. +. ...+...+.....+.+.++... .+..
T Consensus 620 ~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~--~~k~~ld~~~~~~~g~~~sde~~~e---~~~l 694 (901)
T KOG4439|consen 620 FIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFG--LLKAALDPEEFQMNGGDDSDEEQLE---EDNL 694 (901)
T ss_pred hccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcc--hhccccCHHHhhhcCcchhhhhhhh---hhHH
Confidence 0 000000 00111112222222222222110 00 0000000000001111111000 0111
Q ss_pred HHHHHhcc----CCCccccCC-CCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCC
Q 000607 341 QALVTYVP----SGAEWSIGD-DSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHC 415 (1396)
Q Consensus 341 ~~l~~~~~----~~~~~~~~~-~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~ 415 (1396)
..+..... .++.-..+. ...+.......|-|+...++++.........+++|-.+-......+..-|++ .
T Consensus 695 ~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~-----~ 769 (901)
T KOG4439|consen 695 AELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK-----G 769 (901)
T ss_pred HhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh-----C
Confidence 11111111 110000000 0111223344688999988888875445677888888887777777777776 4
Q ss_pred CceeeEEecCCCCcCCCCHHHHHHHHHHHhc--CCee-EEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 416 TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--GLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 416 ~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--g~~n-vLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
|+....++|.. ..++|+++++.|.. |..+ .|++-..++.|||+-..|++|..|+.||+.---|...|..|.
T Consensus 770 g~~y~si~Gqv------~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 770 GHIYTSITGQV------LVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred CeeeeeecCcc------chhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 78889999985 88999999999964 4344 556778899999999999999999999999999999999999
Q ss_pred CCc----EEEEEecCCcchHHHHHHHHHHHHHHH
Q 000607 493 NSD----YLLMVKSGDSTTQSRLENYLASGNKMR 522 (1396)
Q Consensus 493 gs~----~i~lv~~~~~~~~~~i~~~~~~e~~m~ 522 (1396)
|++ .+-++..| ...+++..++.....+.
T Consensus 844 GQkK~V~IhR~~~~g--TvEqrV~~LQdkKldlA 875 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKG--TVEQRVKSLQDKKLDLA 875 (901)
T ss_pred cccCceEEEEEEecC--cHHHHHHHHHHHHHHHH
Confidence 963 22333445 33455665555444443
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=175.11 Aligned_cols=294 Identities=18% Similarity=0.211 Sum_probs=193.4
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-||.|.+++...+.+ +..+.+|||.||++++.+... + ....+++++|...|++.|.-.+++. |+....+.
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal--~------adg~alvi~plislmedqil~lkql-gi~as~ln 165 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL--C------ADGFALVICPLISLMEDQILQLKQL-GIDASMLN 165 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH--h------cCCceEeechhHHHHHHHHHHHHHh-Ccchhhcc
Confidence 599999999999997 899999999999999886443 2 2446999999999999999888874 55444443
Q ss_pred CCCCcccCCccchHHh-----hccCcEEEecHHHHHH------hHhhcCccccceeEEEEeccccccCC-CcHHHHH--H
Q 000607 101 GDMGVDFWDGATWKEE-----MSKHEVLVMTPQILLD------GLRLSYFKLNMIKVLILDECHHARGK-HQYACIM--T 166 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~-----~~~~~ViV~T~q~L~~------~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im--~ 166 (1396)
..... ....|-.. -...+.+..||+.+.. -|.. -+....+.+|-+||+|++... |.++.-- -
T Consensus 166 anssk---e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 166 ANSSK---EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred CcccH---HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33211 12223221 1256789999998763 2222 234567899999999999843 3222111 1
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
+.+.++ -+...|+|||||..+..- +-.+.+..++..+ |. .....+|.. .|.....|
T Consensus 242 ~ilkrq-----f~~~~iigltatatn~vl-----~d~k~il~ie~~~-----tf------~a~fnr~nl---~yev~qkp 297 (695)
T KOG0353|consen 242 GILKRQ-----FKGAPIIGLTATATNHVL-----DDAKDILCIEAAF-----TF------RAGFNRPNL---KYEVRQKP 297 (695)
T ss_pred HHHHHh-----CCCCceeeeehhhhcchh-----hHHHHHHhHHhhh-----ee------ecccCCCCc---eeEeeeCC
Confidence 111111 123459999999866432 1122233333322 10 001111111 11111111
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 298 ~n------------------------------------------------------------------------------ 299 (695)
T KOG0353|consen 298 GN------------------------------------------------------------------------------ 299 (695)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
...-.+.+..+++. .-.+..+||+|=++..++.++..
T Consensus 300 -----------------------------------------~dd~~edi~k~i~~--~f~gqsgiiyc~sq~d~ekva~a 336 (695)
T KOG0353|consen 300 -----------------------------------------EDDCIEDIAKLIKG--DFAGQSGIIYCFSQKDCEKVAKA 336 (695)
T ss_pred -----------------------------------------hHHHHHHHHHHhcc--ccCCCcceEEEeccccHHHHHHH
Confidence 01112222222322 12567899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
|+.+ |+..+..|.. |.+.++..+-+.+-.|++.|+|||-..+.|||-|++..||+..+|.+...|.|
T Consensus 337 lkn~-----gi~a~~yha~------lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 337 LKNH-----GIHAGAYHAN------LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred HHhc-----Cccccccccc------cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 9975 7777777765 68888888888899999999999999999999999999999999999999999
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-16 Score=186.40 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=105.8
Q ss_pred CccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc
Q 000607 367 LLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446 (1396)
Q Consensus 367 ~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~ 446 (1396)
+-..|++.|.-+|.+.. ..+.|||||++-..+.++|..+|+-+ |+-...+.|.+ +-++|+..+++|..
T Consensus 1257 yDcGKLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyH-----gylY~RLDg~t------~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYH-----GYLYVRLDGNT------SVEQRQALMERFNA 1324 (1958)
T ss_pred cccchHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhc-----ceEEEEecCCc------cHHHHHHHHHHhcC
Confidence 34678888877777753 57899999999999999999999864 78888899986 78999999999987
Q ss_pred CC--eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecC
Q 000607 447 GL--VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSG 503 (1396)
Q Consensus 447 g~--~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~ 503 (1396)
.. ...|++|..++.|||+..++.||+||..||+.--.|.-.|..|.|. ..|-|+.+.
T Consensus 1325 D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1325 DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 54 4567799999999999999999999999999999999999999985 455666543
|
|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-18 Score=165.15 Aligned_cols=115 Identities=39% Similarity=0.812 Sum_probs=99.0
Q ss_pred cccccccCCCcccccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCC-CcccHHHHHHHHhCceeccCCCceEeeec
Q 000607 819 ARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNG-SVTTYKKHYEERYGIQLCFDREPLLNGRR 897 (1396)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~-~~~ty~~y~~~k~~~~i~~~~QPll~~~~ 897 (1396)
..++++.+|.+..++++|.+|+++|+++.|.|.+|. +++|.|+|+..++ ...||++||+++||+.|.+++||||+++.
T Consensus 16 ~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~ 94 (135)
T cd02844 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQ 94 (135)
T ss_pred cceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEec
Confidence 356789999999999999999999999999999999 9999999986554 46799999999999999999999999999
Q ss_pred ccccccccchhhhcccC----CCCcceeeeccccccccccccc
Q 000607 898 IFHVQNYLSKCRQQKQK----EPSKISFELPPELCRIIMAPIS 936 (1396)
Q Consensus 898 ~~~~~n~l~~~~~~~~~----~~~~~~~~L~pelC~~~~~p~~ 936 (1396)
+++++|+|+++...++. .....++.||||||.+ +++|
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~--~~~p 135 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSV--IDLP 135 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcc--ccCC
Confidence 99999999998764432 3334458999999965 5543
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=186.80 Aligned_cols=154 Identities=20% Similarity=0.295 Sum_probs=112.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CC
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~ 94 (1396)
..|-.||.+.+...-++ ..+|++||-+|||++.-..|... +|....+.+++++||.+|+.|....+..-+ -.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKV---LResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKV---LRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHH---HhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 44889999999988877 59999999999999988777655 345567889999999999999887766433 23
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh---cCccccceeEEEEeccccccCC---CcHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL---SYFKLNMIKVLILDECHHARGK---HQYACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~---~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~f 168 (1396)
+-..+.|++..++ +...| +++|+|+-|+.+-.+|.. ..-..+++.++||||+|.+.+. +.+.++..
T Consensus 587 rg~sl~g~ltqEY-sinp~-----nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~-- 658 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEY-SINPW-----NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL-- 658 (1330)
T ss_pred cchhhHhhhhHHh-cCCch-----hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH--
Confidence 4444566654442 22234 699999999999887764 3344578999999999999853 22222211
Q ss_pred HHhhccCCCCCCCeEEEEeccCCCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
..+.| +|+||||..+.
T Consensus 659 --------li~CP-~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 --------LIPCP-FLVLSATIGNP 674 (1330)
T ss_pred --------hcCCC-eeEEecccCCH
Confidence 12333 89999999773
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=197.94 Aligned_cols=312 Identities=19% Similarity=0.149 Sum_probs=206.8
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..+..++++.+.+.. +||+++||||||..--..+. +... ..+.++.+.-|.+-=+...++.+.+..+-+++...|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~ll---e~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLL---EEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHH---hhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 556666776666664 88999999999987443322 1111 345578888899977777888888877766665555
Q ss_pred CCCcccCCccchH-HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 102 DMGVDFWDGATWK-EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
=. ..|+ ..-.+.+|-+||.++|++.+.+... ++.+++|||||+|+-.-+ .-++-++....+... ..-
T Consensus 128 Y~-------iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~---tDilLgllk~~~~~r-r~D 195 (845)
T COG1643 128 YS-------IRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLN---TDILLGLLKDLLARR-RDD 195 (845)
T ss_pred EE-------EEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHH---HHHHHHHHHHHHhhc-CCC
Confidence 21 1122 2223689999999999999887665 789999999999986532 233444443321111 112
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
-|++.||||.. ...+.+.++ +.+..+. ....| ..+.|......... +
T Consensus 196 LKiIimSATld--------------~~rfs~~f~~apvi~i~-------GR~fP--Vei~Y~~~~~~d~~---l------ 243 (845)
T COG1643 196 LKLIIMSATLD--------------AERFSAYFGNAPVIEIE-------GRTYP--VEIRYLPEAEADYI---L------ 243 (845)
T ss_pred ceEEEEecccC--------------HHHHHHHcCCCCEEEec-------CCccc--eEEEecCCCCcchh---H------
Confidence 48999999983 334556665 4444331 11111 12223221100000 0
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
T Consensus 244 -------------------------------------------------------------------------------- 243 (845)
T COG1643 244 -------------------------------------------------------------------------------- 243 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC-CCce
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH-CTWK 418 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~-~~~~ 418 (1396)
... +...+..........++||.+.....+...+.|.+. .+ ..+.
T Consensus 244 -----------------------------~~a---i~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l~~~~~ 289 (845)
T COG1643 244 -----------------------------LDA---IVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA--ELGDDLE 289 (845)
T ss_pred -----------------------------HHH---HHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cccCCcE
Confidence 000 111111111234678999999999999999999861 11 3577
Q ss_pred eeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCC----------CCcHH
Q 000607 419 TKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDP----------SRTVC 480 (1396)
Q Consensus 419 ~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~----------p~s~~ 480 (1396)
+..++|. |+..+|.++++---.|.-+|++||+|+|.+|.||++.+|| +||. |-|-.
T Consensus 290 i~PLy~~------L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 290 ILPLYGA------LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred Eeecccc------CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 8888987 6999999988877777777999999999999999999999 4554 45778
Q ss_pred HHHHhhhcccCCC-CcEEEEEec
Q 000607 481 SFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 481 ~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
+..||.|||||-+ |.|+-+.++
T Consensus 364 sA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 364 SADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred hhhhhccccccCCCceEEEecCH
Confidence 8999999999987 889999875
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=185.91 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++-+.+. ...+.++||||+++..++.|+.+|.. .+++...+++.. ++.++..+.+.|+.|
T Consensus 431 ~~~K~~Aii~ei~~~-~~~GrpVLV~t~sv~~se~ls~~L~~-----~gi~~~vLnak~------~~~Ea~ii~~Ag~~G 498 (908)
T PRK13107 431 ADEKYQAIIKDIKDC-RERGQPVLVGTVSIEQSELLARLMVK-----EKIPHEVLNAKF------HEREAEIVAQAGRTG 498 (908)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCeEeccCcc------cHHHHHHHHhCCCCC
Confidence 367888888877764 25788999999999999999999997 488999999974 889999999999999
Q ss_pred CeeEEEEecccccccCCCcc-------------------------------------cEEEEeCCCCcHHHHHHhhhccc
Q 000607 448 LVNVIVATSILEEGLDVQSC-------------------------------------NLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~-------------------------------------~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
. |+|||+++++|+||.-- =+||--..+.|.+---|-+||||
T Consensus 499 ~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaG 576 (908)
T PRK13107 499 A--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAG 576 (908)
T ss_pred c--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccc
Confidence 8 99999999999999632 26888899999999999999999
Q ss_pred CCC--CcEEEEEe
Q 000607 491 MQN--SDYLLMVK 501 (1396)
Q Consensus 491 R~g--s~~i~lv~ 501 (1396)
|.| |....+++
T Consensus 577 RQGDPGss~f~lS 589 (908)
T PRK13107 577 RQGDAGSSRFYLS 589 (908)
T ss_pred cCCCCCceeEEEE
Confidence 998 44444444
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=193.26 Aligned_cols=423 Identities=17% Similarity=0.132 Sum_probs=237.3
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CCeE
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DLKV 96 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~~v 96 (1396)
...++.+.+..+.++ .++|.++||+|||...--.|..- ....++..++++--|.|--|.-.++.+...- |-.|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~--~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDE--AIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHH--HHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 356777777777776 58899999999998876655432 2222355667777799877777777776543 3333
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH-HHHHHHhhccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI-MTEFYHRLLET 175 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i-m~~f~~~~~~~ 175 (1396)
+.-.+-. ........+.+||.++|++.+.. .-.+..+..||+||+|.-.-++.+-.+ ++.+..
T Consensus 252 GYqvrl~----------~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~----- 315 (924)
T KOG0920|consen 252 GYQVRLE----------SKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP----- 315 (924)
T ss_pred eEEEeee----------cccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhh-----
Confidence 3222211 12223578999999999999876 455789999999999987766555544 333331
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
..+.-++++||||.... .....+ ++.+.++ .....|.. ..+.
T Consensus 316 -~~p~LkvILMSAT~dae--------------~fs~YF~~~pvi~i--------------------~grtfpV~--~~fL 358 (924)
T KOG0920|consen 316 -RNPDLKVILMSATLDAE--------------LFSDYFGGCPVITI--------------------PGRTFPVK--EYFL 358 (924)
T ss_pred -hCCCceEEEeeeecchH--------------HHHHHhCCCceEee--------------------cCCCcchH--HHHH
Confidence 12445799999997421 111111 1222221 11111211 1111
Q ss_pred H-HHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 255 D-ELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 255 ~-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+ .+.... +........ .+ ....
T Consensus 359 EDil~~~~------------------------------------------------~~~~~~~~~--~~--~~~~----- 381 (924)
T KOG0920|consen 359 EDILSKTG------------------------------------------------YVSEDDSAR--SG--PERS----- 381 (924)
T ss_pred HHHHHHhc------------------------------------------------ccccccccc--cc--cccC-----
Confidence 1 111100 000000000 00 0000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-cCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY-RGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.+.... +. .|. . .-....+.+++... .......+|||-+.-.....+.+.|....+
T Consensus 382 -~~~~~~--~~-------~~~----------~---~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~ 438 (924)
T KOG0920|consen 382 -QLRLAR--LK-------LWE----------P---EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP 438 (924)
T ss_pred -cccccc--ch-------hcc----------c---cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc
Confidence 000000 00 000 0 01222333333332 234467899999999999999999986533
Q ss_pred CCC--CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCCCCcH---
Q 000607 413 RHC--TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDPSRTV--- 479 (1396)
Q Consensus 413 ~~~--~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~p~s~--- 479 (1396)
.-. .+-+..+|+. |+..+|+.+.+.--.|.-+|++||+++|.+|.|++|-+|| +||+-.+.
T Consensus 439 f~~~~~~~ilplHs~------~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l 512 (924)
T KOG0920|consen 439 FADSLKFAILPLHSS------IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCL 512 (924)
T ss_pred cccccceEEEecccc------CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchh
Confidence 311 2455666766 7999999999998899999999999999999999999999 57775543
Q ss_pred -------HHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHH----HHHHhc-----------cCCCCCCC
Q 000607 480 -------CSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMR----KEVLSH-----------ASLPCSPL 536 (1396)
Q Consensus 480 -------~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~----~~~~~~-----------~~~~~~~~ 536 (1396)
.+-.||+|||||-. |.++.+++....+.. ....+.-+.++ +.+++- .+...++.
T Consensus 513 ~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~---~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP 589 (924)
T KOG0920|consen 513 LLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKL---MLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPP 589 (924)
T ss_pred heeeccccchHHhcccccCccCCeeEEeechhhhhhc---ccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCC
Confidence 34569999999965 788888875422211 11000111111 111111 11122222
Q ss_pred CCCCCCCcceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEE
Q 000607 537 NNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGIC 592 (1396)
Q Consensus 537 ~~~~~~~~~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~ 592 (1396)
..+.-....-....-|| ++.+..++-|.++|++||-|.- .++..+-+..|.|
T Consensus 590 ~~~~v~~a~~~L~~iga-L~~~e~LT~LG~~la~lPvd~~---igK~ll~g~if~c 641 (924)
T KOG0920|consen 590 PADAVDLAIERLKQIGA-LDESEELTPLGLHLASLPVDVR---IGKLLLFGAIFGC 641 (924)
T ss_pred ChHHHHHHHHHHHHhcc-ccCcccchHHHHHHHhCCCccc---cchhheehhhccc
Confidence 22211111112333455 3556688889999999998763 3344333444555
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=173.70 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=107.2
Q ss_pred ccchHHHHHHHHHHhc--------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALK--------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~--------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
+.+|+||.+++..+.+ +++++.+|||||||.+++.++..+.. +++|+||+..|+.|+.+.+..+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 4699999999999994 46999999999999999987766532 7999999999999999999766
Q ss_pred cCCeEEEEeCCC--------CcccCCccchHH--hhccCcEEEecHHHHHHhHhhc-----------CccccceeEEEEe
Q 000607 92 TDLKVGKYWGDM--------GVDFWDGATWKE--EMSKHEVLVMTPQILLDGLRLS-----------YFKLNMIKVLILD 150 (1396)
Q Consensus 92 ~~~~v~~~~G~~--------~~~~~~~~~~~~--~~~~~~ViV~T~q~L~~~l~~~-----------~~~l~~i~llI~D 150 (1396)
..-......... .........|.. .....++++.|++.+....... .......++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 543332221110 000111122322 2347899999999999776431 1234578999999
Q ss_pred ccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 151 ECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 151 EaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
||||+.+...|..++. ...+.+|+|||||.
T Consensus 154 EaH~~~~~~~~~~i~~-----------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYREIIE-----------FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHHHHH-----------SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHHHHc-----------CCCCeEEEEEeCcc
Confidence 9999998655666665 23578999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=175.47 Aligned_cols=125 Identities=22% Similarity=0.192 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeEE
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKVG 97 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v~ 97 (1396)
+||||.+++..+..+ ++|+.++||+|||+++++.+..-+ +. ++.+++|+||+.|+.|.++.+.. +++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a--L~---g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~ 167 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA--LT---GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTG 167 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH--hh---cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 499999999999887 899999999999999998655322 21 23489999999999998887765 4689999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhcCcccc-------ceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLSYFKLN-------MIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~~~~l~-------~i~llI~DEaH~~~~ 157 (1396)
.+.|+++... +...-.++|+|+||+.| .+.++.+.+.++ .+.++|+|||+.+.-
T Consensus 168 ~i~GG~~~~e------q~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 168 VLVSGSPLEK------RKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEeCCCCHHH------HHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 9999865441 11122699999999999 999988766555 458999999998864
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=178.06 Aligned_cols=122 Identities=25% Similarity=0.359 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe
Q 000607 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV 449 (1396)
Q Consensus 370 ~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~ 449 (1396)
.++..|++.|..+. ..+.++||||+++..++.|...|.+. ++++.++||. |++.+|.++++.|+.|++
T Consensus 430 ~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~------~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 430 GQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSD------IDTLERVEIIRDLRLGEF 497 (652)
T ss_pred ccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECC------CCHHHHHHHHHHHHcCCc
Confidence 35666777776653 46789999999999999999999974 7899999997 599999999999999999
Q ss_pred eEEEEecccccccCCCcccEEEEeCC-----CCcHHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 450 NVIVATSILEEGLDVQSCNLVIMFDP-----SRTVCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 450 nvLVaTsvleeGiDIp~~~lVI~fD~-----p~s~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
+|||||+++++|+|+|++++||++|. |.+..+|+||+||+||.. |.++++++..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999885 789999999999999965 5677777643
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=172.84 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..|-.++++.+.++ -+||.++||||||.. |..++....-....++-+--|.|.-|...++.+....+-+.|.-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 45555677776666 488999999999887 3333322211223337777799877766666666554433333332
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCC
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLP 181 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p 181 (1396)
-. + ..-+..-...+|.++|-++|++-+.... .++++++||+||||.-. -...++-+++...++. ...-
T Consensus 129 Y~-I-----RFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERs---l~TDiLlGlLKki~~~--R~~L 196 (674)
T KOG0922|consen 129 YT-I-----RFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERS---LHTDILLGLLKKILKK--RPDL 196 (674)
T ss_pred eE-E-----EecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhh---hHHHHHHHHHHHHHhc--CCCc
Confidence 10 0 0011122368899999999997654333 36899999999999643 3345666666544222 1123
Q ss_pred eEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHH
Q 000607 182 RIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMI 260 (1396)
Q Consensus 182 ~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l 260 (1396)
|++.||||.. ...+.+.++. .+.++. ....|. .+.|...+.+
T Consensus 197 klIimSATld--------------a~kfS~yF~~a~i~~i~-------GR~fPV--ei~y~~~p~~-------------- 239 (674)
T KOG0922|consen 197 KLIIMSATLD--------------AEKFSEYFNNAPILTIP-------GRTFPV--EILYLKEPTA-------------- 239 (674)
T ss_pred eEEEEeeeec--------------HHHHHHHhcCCceEeec-------CCCCce--eEEeccCCch--------------
Confidence 8999999982 3334444433 333331 111111 1222221110
Q ss_pred HHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHH
Q 000607 261 ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDAS 340 (1396)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (1396)
.|+..+.
T Consensus 240 -------------------------------------------------------------------------dYv~a~~ 246 (674)
T KOG0922|consen 240 -------------------------------------------------------------------------DYVDAAL 246 (674)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0111111
Q ss_pred HHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCC-Cc--
Q 000607 341 QALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHC-TW-- 417 (1396)
Q Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~-~~-- 417 (1396)
.. .+++ +...+..-++||-...+..+...+.|.+...... +.
T Consensus 247 ~t--------------------------------v~~I---h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 247 IT--------------------------------VIQI---HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred HH--------------------------------HHHH---HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 11 1111 1113455799999999999999999987632211 11
Q ss_pred eeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCC----------CCcH
Q 000607 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDP----------SRTV 479 (1396)
Q Consensus 418 ~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~----------p~s~ 479 (1396)
.+..++|. |+.++|.++.+.--.|.-+|++||+++|..|.||.+.+|| .|++ |-|.
T Consensus 292 ~~lply~a------L~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 292 LILPLYGA------LPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred eeeeeccc------CCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 34567776 6999999998888889999999999999999999999999 4554 5577
Q ss_pred HHHHHhhhcccCCC-CcEEEEEecC
Q 000607 480 CSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 480 ~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
.+-.||.|||||.| |+++-+.++.
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTES 390 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHH
Confidence 88999999999988 7899998744
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-14 Score=190.10 Aligned_cols=445 Identities=17% Similarity=0.141 Sum_probs=247.3
Q ss_pred ccchHHHHHHHHHHh---c---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 20 PFARNYQLEALENAL---K---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l---~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
..+|+||.+.++... . .+.|++.++|.|||+.++.++.+..+.... ..+..+++||+ +++.+|.+++.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~-~~~~~liv~p~-s~~~nw~~e~~k~~~ 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV-YLGPALIVVPA-SLLSNWKREFEKFAP 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC-CCCCeEEEecH-HHHHHHHHHHhhhCc
Confidence 458999999998755 2 379999999999999999887663332221 24579999999 88899999999887
Q ss_pred CCe-EEEEeCCCCcccCCccchHHhhcc-----CcEEEecHHHHHHh-HhhcCccccceeEEEEeccccccCCCcHHHHH
Q 000607 93 DLK-VGKYWGDMGVDFWDGATWKEEMSK-----HEVLVMTPQILLDG-LRLSYFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 93 ~~~-v~~~~G~~~~~~~~~~~~~~~~~~-----~~ViV~T~q~L~~~-l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
.++ +..++|...............+.. .+|+++|++.+... ..++.+.-..++.+|+||||++++..+-...-
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~ 494 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKA 494 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHH
Confidence 466 788888743100011122222222 79999999999873 23445666789999999999988754333222
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC----CeEEeccChhhhcccccCCcceeEecc
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN----SKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~----~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
..+.+ ....+.||+||..+ .+.+|-++++ ...... ....+......|........
T Consensus 495 l~~~~---------~~~~~~LtgTPlen-----------~l~eL~sl~~~f~~p~~~~~-~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 495 LQFLK---------ALNRLDLTGTPLEN-----------RLGELWSLLQEFLNPGLLGT-SFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred HHHHh---------hcceeeCCCChHhh-----------hHHHHHHHHHHHhCCccccc-hHHHHHHHHhhhhhhccccc
Confidence 22332 23459999999543 2444444444 222221 13344444444333222211
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHH---HHH---------HHHHHHHHHHHHH----HHHhHHHHHHH
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQA---ELI---------RKKVSKINSTLLY----CLSELGVWLAL 305 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~---~~~---------~~~~~~~~~~~~~----~~~~lg~~~a~ 305 (1396)
. ..........+..+..++ .++........+ +.. ...-..++..... ....+...
T Consensus 554 ~----~~~~~~~~~~l~~~i~~f--~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~--- 624 (866)
T COG0553 554 P----LEARELGIELLRKLLSPF--ILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL--- 624 (866)
T ss_pred c----hhhHHHHHHHHHHHHHHH--hhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 000000011121222222 111100000000 000 0000001110000 00000000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccC-CCCcc-------------c--CCCCCcc
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIG-DDSKF-------------N--LDSGLLT 369 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~-------------~--~~~~~~s 369 (1396)
.....+....+ . ....+......+++.+.....+... ..... . -.....+
T Consensus 625 ------~~~~~~~~~~~--~------~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 690 (866)
T COG0553 625 ------EKADSDENRIG--D------SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLS 690 (866)
T ss_pred ------Hhhcccccccc--c------hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhcc
Confidence 00000000000 0 0000011111112222111000000 00000 0 0011224
Q ss_pred -HHHHHHHHHH-hhhcCCCCe--eEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh
Q 000607 370 -EKIVCLIESL-LEYRGVEDI--RCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR 445 (1396)
Q Consensus 370 -~Kv~~L~~~L-~~~~~~~~~--k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr 445 (1396)
.|...+.++| .... ..+. +++||++...+...+...+... ++....+.|+. +.+.|.+.+++|.
T Consensus 691 ~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l~il~~~l~~~-----~~~~~~ldG~~------~~~~r~~~i~~f~ 758 (866)
T COG0553 691 KGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVLDLLEDYLKAL-----GIKYVRLDGST------PAKRRQELIDRFN 758 (866)
T ss_pred chHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHHHHHHHHHHhc-----CCcEEEEeCCC------ChhhHHHHHHHhh
Confidence 7888888888 4432 3455 9999999999999999999974 47788999984 7899999999999
Q ss_pred cC--CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcchHHHHHHHHHHHH
Q 000607 446 RG--LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDSTTQSRLENYLASGN 519 (1396)
Q Consensus 446 ~g--~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~~~~~i~~~~~~e~ 519 (1396)
++ ..-++++|.+++.|+|+..++.||.||+.||+....|+..||.|.|+ .++-++.++ ...+++-.......
T Consensus 759 ~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~--tiEe~i~~~~~~K~ 836 (866)
T COG0553 759 ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG--TIEEKILELQEKKQ 836 (866)
T ss_pred cCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC--cHHHHHHHHHHHHH
Confidence 86 45577788999999999999999999999999999999999999886 355555555 33344444444444
Q ss_pred HHHHH
Q 000607 520 KMRKE 524 (1396)
Q Consensus 520 ~m~~~ 524 (1396)
.+...
T Consensus 837 ~l~~~ 841 (866)
T COG0553 837 ELLDS 841 (866)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=191.90 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=80.2
Q ss_pred CCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh----cCCeeEEEEeccccc
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR----RGLVNVIVATSILEE 460 (1396)
Q Consensus 385 ~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr----~g~~nvLVaTsvlee 460 (1396)
.++.+++|-|||+..|..++..|+.. +.++..+||. ++.++|.+.++.++ .+...|+|||+|.|.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~-----~~~v~LlHSR------f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEK-----GPKVLLLHSR------FTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhc-----CCCEEEEecc------cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 46789999999999999999999964 2268899997 57788887777544 578899999999999
Q ss_pred ccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 461 GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 461 GiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|+|+ +++++|. -+....+.|||.||..|.|
T Consensus 507 gvDi-dfd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 507 GVDI-DFDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred Eecc-ccCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 9999 5888876 5556789999999998877
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-14 Score=175.82 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 20 PFARNYQLEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
..+.+-|..+++.+... ..++.+.||||||.+++-+|...+. .||.+|||||-.+|-.|..+.|+..++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-----~GkqvLvLVPEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-----QGKQVLVLVPEIALTPQLLARFKARFGA 271 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-----cCCEEEEEeccccchHHHHHHHHHHhCC
Confidence 45788899999888764 3999999999999999988876654 5789999999999999999999999999
Q ss_pred eEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
++..++++.+... ....|.+.. ...+|||+|-.-+ |..+.++.|||+||=|-..
T Consensus 272 ~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~s 326 (730)
T COG1198 272 KVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSS 326 (730)
T ss_pred ChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEecccccc
Confidence 9999999865432 335688777 4799999998765 6678899999999999776
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=158.81 Aligned_cols=225 Identities=20% Similarity=0.244 Sum_probs=179.8
Q ss_pred ChhhHHhHHHHHHHcC-cccCCHHHHHHHhccCCCCCC----------------CCCCccchhhhhhHHHhHHHHHHHHH
Q 000607 1144 HAERLVNVRHLESLLN-YSFRDPSLLVEALTHGSYMLP----------------EIPRCYQRLEFLGDAVLDYLITVYLY 1206 (1396)
Q Consensus 1144 ~~~~~~~~~~le~~lg-y~f~~~~ll~~Alth~S~~~~----------------~~~~~yerLEfLGDavL~~~v~~~l~ 1206 (1396)
+......+..++++|| -.| ..+.+..|||.+|+... ....+|+-|--.|..++++.|++||-
T Consensus 58 ~W~~~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~ 136 (333)
T KOG3769|consen 58 NWDYNSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLK 136 (333)
T ss_pred CcchhHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344566899999999 555 67889999999998641 22478999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHH
Q 000607 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDII 1286 (1396)
Q Consensus 1207 ~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~ 1286 (1396)
.+||.++...++.+-+.+++.++||.+|..+|+.++++..+-....+ ....+...+++
T Consensus 137 ~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~~e----------------------isq~ess~~aI 194 (333)
T KOG3769|consen 137 CKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKVGE----------------------ISQDESSRRAI 194 (333)
T ss_pred HhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCchh----------------------hhHHHHHHHHH
Confidence 99999999999999999999999999999999998877655332211 11225678888
Q ss_pred HHHhhheeeecCCChHHHHHHhhhcc-ccccCccc--ccCCchhHHHHHHHhcCCCCCcceeeccCC----ceEEEEEEE
Q 000607 1287 ESLAGAIFVDSGCNREVVFQSIRPLL-EPMITPET--MRFHPVRELTEYCQKNHFSMKKPVASRISG----KAAVTVEVQ 1359 (1396)
Q Consensus 1287 EA~iGAi~~d~g~~~~~~~~~~~~~l-~~~~~~~~--~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g----~~~~~~~v~ 1359 (1396)
-|++|+++...|++ .|.+|+.+.+ ..-+++.. ...+|.+.|.++|++.|.+-+.++...+.| .+.|.|+||
T Consensus 195 ~Al~~~~~~ek~~~--~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiY 272 (333)
T KOG3769|consen 195 GALLGSVGLEKGFN--FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIY 272 (333)
T ss_pred HHHHhcccHHHHHH--HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEee
Confidence 99999988877763 4555554432 22233211 237999999999999999888788777766 346999999
Q ss_pred ECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1360 ANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1360 v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
.|.+.+| .|.|.|.+.|+..||..||.+|-...|
T Consensus 273 s~kkllG-qG~Gesl~~A~e~AA~dAL~k~y~~tp 306 (333)
T KOG3769|consen 273 SGKKLLG-QGQGESLKLAEEQAARDALIKLYDHTP 306 (333)
T ss_pred cCchhhc-cCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence 9999998 899999999999999999999876654
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=174.88 Aligned_cols=375 Identities=13% Similarity=0.113 Sum_probs=211.4
Q ss_pred cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCc
Q 000607 119 KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSS 198 (1396)
Q Consensus 119 ~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~ 198 (1396)
...|+++||++|.+.+-.+.+.+++++.|||||||++.+++.|.-|++.|.. .++.+.|.|+||+|..-..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~------~n~~gfIkafSdsP~~~~~--- 77 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQ------KNKTGFIKAFSDNPEAFTM--- 77 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHH------hCCCcceEEecCCCccccc---
Confidence 5789999999999999999999999999999999999999999999987763 3567899999999986321
Q ss_pred hhhHHHHHHHHHHHhCCeEEe--ccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchh--
Q 000607 199 EQDYWQKIHDLETLMNSKVYT--CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN-- 274 (1396)
Q Consensus 199 ~~~~~~~i~~Le~~L~~~i~~--~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~-- 274 (1396)
-...+.++...|+-+-.. .....++..+...-... +.+-...+|..+.. +...+....+.+...|+..+..
T Consensus 78 ---g~~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~-V~ei~V~l~~~m~~-Iq~~l~~~l~~~l~eLkr~n~~ld 152 (814)
T TIGR00596 78 ---GFSPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAE-VIELHVSLTDSMSQ-IQSAILECLNKCIAELKRKNPELD 152 (814)
T ss_pred ---chHHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCe-EEEEEeCCCHHHHH-HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 113577777777755333 34556666666542112 22223345555443 5555555555555555443211
Q ss_pred hHHHH-----------HHHHHH-----------HHHHH------HHHHHHHhHHHHHHHHHHH-Hhhccc----c--chh
Q 000607 275 EAQAE-----------LIRKKV-----------SKINS------TLLYCLSELGVWLALKAAE-TISCYE----S--DFF 319 (1396)
Q Consensus 275 ~~~~~-----------~~~~~~-----------~~~~~------~~~~~~~~lg~~~a~~~~~-~~~~~~----~--~~~ 319 (1396)
...+. ..+.++ +++.. .....+...+.-...+..+ .+.... . ...
T Consensus 153 ~~dl~~en~l~~~F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S 232 (814)
T TIGR00596 153 MEDWNLENALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSES 232 (814)
T ss_pred HHHhHHhhhhhhhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccCC
Confidence 00000 001111 11111 1111111111111111111 100000 0 000
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCC-CccHHHHHHHHHHhhhcC--------CCCeeE
Q 000607 320 AWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSG-LLTEKIVCLIESLLEYRG--------VEDIRC 390 (1396)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~Kv~~L~~~L~~~~~--------~~~~k~ 390 (1396)
.|--. +.....+..+...+-. ... ......... ...||...|.++|.+... .++.++
T Consensus 233 ~Wl~~-----daa~~lf~~ak~Rvy~--~~~-------~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~i 298 (814)
T TIGR00596 233 PWLLL-----DAAQLIFSYARQRVYY--EGE-------GPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKV 298 (814)
T ss_pred cchhh-----HHHHHHHHHHHHHHhc--ccc-------ccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcE
Confidence 00000 0111222222221110 000 000001111 248999999999977321 346789
Q ss_pred EEEechHHHHHHHHHHHHhhcCCCCCceeeEEe----------cCC----------------------------------
Q 000607 391 IIFVERVITAIVLQSLLSELLPRHCTWKTKYIA----------GNN---------------------------------- 426 (1396)
Q Consensus 391 IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~----------G~~---------------------------------- 426 (1396)
||||+.+.|+..|.++|....-. .+. ..++. |..
T Consensus 299 LI~~~d~~T~~qL~~~L~~~~~~-~~~-~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr 376 (814)
T TIGR00596 299 LIMCSDNRTCLQLRDYLTTSNKK-RGS-RAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKR 376 (814)
T ss_pred EEEEcchHHHHHHHHHHHhcccc-ccH-HHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccc
Confidence 99999999999999988650000 000 00000 000
Q ss_pred CCcCCCCHHHHHHHHHHHhcCCee---------EE-----------------------EEecccccccCCCc--------
Q 000607 427 SGIQCQSRKKQNEIVEEFRRGLVN---------VI-----------------------VATSILEEGLDVQS-------- 466 (1396)
Q Consensus 427 ~~~~~ms~~~r~~~l~~Fr~g~~n---------vL-----------------------VaTsvleeGiDIp~-------- 466 (1396)
....||+++ .+.+||.|+.+ ++ |+|++.++|+|+|.
T Consensus 377 rr~rG~s~~----~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~ 452 (814)
T TIGR00596 377 RRVRGGSEV----AVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAANDSKIFEIIDEENDIDIYSGAEFDNLP 452 (814)
T ss_pred cccccchhH----HHhhhcccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccchhhcccccc
Confidence 001123222 26778777665 44 78999999999998
Q ss_pred --------------c----------cEEEEeCCCCcHHHHHH--hhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 000607 467 --------------C----------NLVIMFDPSRTVCSFIQ--SRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNK 520 (1396)
Q Consensus 467 --------------~----------~lVI~fD~p~s~~~yiQ--r~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~ 520 (1396)
+ ++||.||+-.+...-+| |.||.+|.+ ++++|+..+. ...+.+-..++.|+.
T Consensus 453 ~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~~-rVyfL~y~~S-~EEq~yl~sirrEK~ 530 (814)
T TIGR00596 453 QHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRPL-RVYFLYYGGS-IEEQRYLTSLRREKD 530 (814)
T ss_pred ceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCCc-EEEEEEECCc-HHHHHHHHHHHHHHH
Confidence 5 89999999999999999 999999884 4555555443 334455556677888
Q ss_pred HHHHHHhcc
Q 000607 521 MRKEVLSHA 529 (1396)
Q Consensus 521 m~~~~~~~~ 529 (1396)
|-+..++..
T Consensus 531 AFe~LIrek 539 (814)
T TIGR00596 531 AFTKLIREK 539 (814)
T ss_pred HHHHHHHHH
Confidence 877766653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-13 Score=152.48 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCee
Q 000607 371 KIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVN 450 (1396)
Q Consensus 371 Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~n 450 (1396)
.+.-|++-+..- ...+.|++|-+=++.+|+.|.++|.+. |+++.++|++. ..-+|.+++++.|.|++.
T Consensus 431 QvdDL~~EI~~r-~~~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdi------dTlER~eIirdLR~G~~D 498 (663)
T COG0556 431 QVDDLLSEIRKR-VAKNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDI------DTLERVEIIRDLRLGEFD 498 (663)
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccc------hHHHHHHHHHHHhcCCcc
Confidence 344444444432 346799999999999999999999984 99999999985 778999999999999999
Q ss_pred EEEEecccccccCCCcccEEEEeCC-----CCcHHHHHHhhhcccCCC-CcEEEEEe
Q 000607 451 VIVATSILEEGLDVQSCNLVIMFDP-----SRTVCSFIQSRGRARMQN-SDYLLMVK 501 (1396)
Q Consensus 451 vLVaTsvleeGiDIp~~~lVI~fD~-----p~s~~~yiQr~GRA~R~g-s~~i~lv~ 501 (1396)
|||.-+.+-||+|+|.|.+|..+|. ..|.++.||-+|||.|.- |++++..+
T Consensus 499 vLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 499 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred EEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999999999999999986 458899999999999865 56555544
|
|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-15 Score=141.48 Aligned_cols=109 Identities=16% Similarity=0.215 Sum_probs=87.1
Q ss_pred ccCceeeeeecccCCCCCCCCCCcccccccccccccCCCcccccccCcEEecCcCC----eeEEEEeecCCCCCCCcCcc
Q 000607 790 LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNG----QIYCITGVLGHLNANSLFTR 865 (1396)
Q Consensus 790 ~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~----~~Y~v~~i~~dl~p~s~~~~ 865 (1396)
.|||.+++.+.+.....+. .. .. .......+.++++.|++|+++|+| ++|.|.+|++|++|.|+|+.
T Consensus 6 ~iDw~~~~~i~~~~~~~p~--~~-~~------~~r~~~~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~ 76 (122)
T cd02843 6 DIDWEFMEKIEANARIGPR--AT-PD------EARQPFKFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPG 76 (122)
T ss_pred eechhHHHHHhhhcccCCC--CC-hh------HHhhcCCCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCC
Confidence 6999999975422210001 00 00 012345678899999999999998 79999999999999999975
Q ss_pred CCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhh
Q 000607 866 NNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCR 909 (1396)
Q Consensus 866 ~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~ 909 (1396)
. ++.||.+||+.|||+.|.+.+||||+++.++.+.|||+|+.
T Consensus 77 ~--~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~lNll~pr~ 118 (122)
T cd02843 77 P--EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLLTPRY 118 (122)
T ss_pred C--CCccHHHHHHHhcCeEeccCCCCcEeecCccccccccCccc
Confidence 3 37899999999999999999999999999999999999864
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=155.11 Aligned_cols=160 Identities=29% Similarity=0.331 Sum_probs=121.8
Q ss_pred cccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---
Q 000607 19 LPFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD--- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~--- 93 (1396)
...++++|.+++..+... ++++.++||+|||.+++..+.+... ....+++++++|++.++.||.+.+.....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~---~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK---RGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc---ccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 455899999999999984 7999999999999987776654422 22356799999999999999999998763
Q ss_pred -CeEEEEeCCCCcccCCccchHHhhccC-cEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 94 -LKVGKYWGDMGVDFWDGATWKEEMSKH-EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 94 -~~v~~~~G~~~~~~~~~~~~~~~~~~~-~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
.....+.|... ...|....... +|+++|++.+.+.+........+++++|+||||++... .+...+..+...
T Consensus 83 ~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~ 156 (201)
T smart00487 83 LKVVGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKL 156 (201)
T ss_pred eEEEEEeCCcch-----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHh
Confidence 33444444321 24455555555 99999999999998877677788999999999999864 455555555532
Q ss_pred hccCCCCCCCeEEEEeccCCC
Q 000607 172 LLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~ 192 (1396)
....++++++||||..
T Consensus 157 -----~~~~~~~v~~saT~~~ 172 (201)
T smart00487 157 -----LPKNVQLLLLSATPPE 172 (201)
T ss_pred -----CCccceEEEEecCCch
Confidence 1346789999999974
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-13 Score=164.05 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..|...+++.+.... ..+.++||||+++..++.|+++|.. .+++...+|+ .+.+|+..+.+|+.+.
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~-----~gI~h~vLna--------kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRA-----KRIAHNVLNA--------KQHDREAEIVAEAGQK 646 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHH-----cCCCceeecC--------CHHHhHHHHHHhcCCC
Confidence 568899999887742 4678999999999999999999997 4888889986 4578999999999999
Q ss_pred eeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCC
Q 000607 449 VNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGD 504 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~ 504 (1396)
..|+|||+++++|+||+ .+. +||.++.|.|.+.|.|++||+||.| |..+.+++.+|
T Consensus 647 g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 647 GAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999999999999999 443 3499999999999999999999998 56777776543
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=158.39 Aligned_cols=313 Identities=17% Similarity=0.122 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 24 NYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
..+.+++..+.+++ +||+++||||||.+-. +.+++ ..-.....+-+--|.+.-+...+..+....+...+.-.|-
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQl~---QyL~e-dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQLA---QYLYE-DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhhhH---HHHHh-cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 34556666666665 7799999999998733 22222 1112333455666999888888888887765544433331
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCe
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPR 182 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ 182 (1396)
. ...-+-.-.+..|-.||-++|+.-.-. .-.+++++.||+||||.-.-| ..|+.+++...+. ....-+
T Consensus 435 s------IRFEdvT~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslN---tDilfGllk~~la--rRrdlK 502 (1042)
T KOG0924|consen 435 S------IRFEDVTSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLN---TDILFGLLKKVLA--RRRDLK 502 (1042)
T ss_pred E------EEeeecCCCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccc---hHHHHHHHHHHHH--hhccce
Confidence 0 000111123567889999999864321 234678999999999976533 2344444443221 123457
Q ss_pred EEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHH
Q 000607 183 IFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIE 261 (1396)
Q Consensus 183 ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~ 261 (1396)
++.+|||.. +..+.+.++ +..++.. ....|. .+.|...+.
T Consensus 503 liVtSATm~--------------a~kf~nfFgn~p~f~Ip-------GRTyPV--~~~~~k~p~---------------- 543 (1042)
T KOG0924|consen 503 LIVTSATMD--------------AQKFSNFFGNCPQFTIP-------GRTYPV--EIMYTKTPV---------------- 543 (1042)
T ss_pred EEEeecccc--------------HHHHHHHhCCCceeeec-------CCccce--EEEeccCch----------------
Confidence 899999972 445556665 4444331 001111 111221110
Q ss_pred HHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHH
Q 000607 262 LKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQ 341 (1396)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (1396)
..|.+-
T Consensus 544 -----------------------------------------------------------------------eDYVea--- 549 (1042)
T KOG0924|consen 544 -----------------------------------------------------------------------EDYVEA--- 549 (1042)
T ss_pred -----------------------------------------------------------------------HHHHHH---
Confidence 001100
Q ss_pred HHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH----HHHhhcCC-CCC
Q 000607 342 ALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS----LLSELLPR-HCT 416 (1396)
Q Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~----~L~~~~p~-~~~ 416 (1396)
.+++.+ .+ +......-++||....+..+.... -|.++... ..+
T Consensus 550 avkq~v------~I--------------------------hl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~ 597 (1042)
T KOG0924|consen 550 AVKQAV------QI--------------------------HLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTD 597 (1042)
T ss_pred HHhhhe------Ee--------------------------eccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCc
Confidence 011100 00 111244568899887665544444 44433111 135
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeC--------C----------CCc
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD--------P----------SRT 478 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD--------~----------p~s 478 (1396)
+.+..+.+. |+..-|.+++++--.|.-+|||||+++|..|.||.+.+||.-+ + |-|
T Consensus 598 L~vlpiYSQ------Lp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 598 LAVLPIYSQ------LPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred eEEEeehhh------CchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 677777666 6888999999888889999999999999999999999999422 2 556
Q ss_pred HHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 479 VCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
-.+--||.|||||.| |.++-++++.
T Consensus 672 ~AnA~QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred hccchhhccccCCCCCcceeeehhhh
Confidence 667789999999988 7899888743
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=143.96 Aligned_cols=142 Identities=26% Similarity=0.267 Sum_probs=106.7
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC--CeEEEEeCCCCcccCCccch
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD--LKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~G~~~~~~~~~~~~ 113 (1396)
+++++.++||+|||.+++.++..+... ...+++++++|++.|+.|+.+.+..... ..+..+.+.... ...+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI----KQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch----hHHH
Confidence 368999999999999999887765432 3567899999999999999999998774 788877776322 2333
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.......+|+++|++.+...+.........++++|+||||++.........+.... .....++++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~------~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILL------KLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHh------hCCccceEEEEeccC
Confidence 44456899999999999887765544566899999999999987644443211111 234567899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=130.64 Aligned_cols=73 Identities=36% Similarity=0.575 Sum_probs=70.3
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||+ |+.++|.+++++|++|+.++||||+++++|||+|.+++||++|+|+|+..|+|+.||++|.|
T Consensus 6 ~~~~~~~i~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGD------MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTT------SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECC------CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 48999999997 59999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=156.34 Aligned_cols=313 Identities=19% Similarity=0.147 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
++|-.+++.++.+.. +||.++||||||.+ |.+++.... ..+++++-+--|.+.-+...+..+.+..|.+.|.-+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ----iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ----IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc----ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 556667777777664 77999999999987 454443221 225666778889999999999888887776665544
Q ss_pred CCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
|- +....+......-+-+||-++|+.-+.. -..+..+++||+||||.-.-+ ..|+-+......+ ..+-
T Consensus 343 GY------sIRFEdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~---TDILfgLvKDIar--~Rpd 410 (902)
T KOG0923|consen 343 GY------SIRFEDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLH---TDILFGLVKDIAR--FRPD 410 (902)
T ss_pred ce------EEEeccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhh---hhHHHHHHHHHHh--hCCc
Confidence 42 1111122223456779999999976543 345789999999999965421 2344444433211 1223
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
-++|..|||.- ..+....+|. .++.+. .+.-...+.|...+.
T Consensus 411 LKllIsSAT~D--------------AekFS~fFDdapIF~iP---------GRRyPVdi~Yt~~PE-------------- 453 (902)
T KOG0923|consen 411 LKLLISSATMD--------------AEKFSAFFDDAPIFRIP---------GRRYPVDIFYTKAPE-------------- 453 (902)
T ss_pred ceEEeeccccC--------------HHHHHHhccCCcEEecc---------CcccceeeecccCCc--------------
Confidence 47889999972 2334444443 222210 000111122222110
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
..|+..+
T Consensus 454 -------------------------------------------------------------------------AdYldAa 460 (902)
T KOG0923|consen 454 -------------------------------------------------------------------------ADYLDAA 460 (902)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0111111
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHH----hhcCCCC
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLS----ELLPRHC 415 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~----~~~p~~~ 415 (1396)
...+-++ +...+..-+|||....+........|. .+.....
T Consensus 461 i~tVlqI-----------------------------------H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~ 505 (902)
T KOG0923|consen 461 IVTVLQI-----------------------------------HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIR 505 (902)
T ss_pred Hhhheee-----------------------------------EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111 111244567888776555544444444 3322212
Q ss_pred CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE--------eCC----------CC
Q 000607 416 TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM--------FDP----------SR 477 (1396)
Q Consensus 416 ~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~--------fD~----------p~ 477 (1396)
.+-+..++.+ ++...|..+++---.|--+|++||+++|..|.|+++++||. |++ |-
T Consensus 506 eliv~PiYaN------LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 506 ELIVLPIYAN------LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred eEEEeecccc------CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 3445556555 68899999988888898999999999999999999999993 433 55
Q ss_pred cHHHHHHhhhcccCCC-CcEEEEEec
Q 000607 478 TVCSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
|-.+-.||.|||||.| |+|+-+++.
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~ 605 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTA 605 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeech
Confidence 6678899999999998 899999873
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=172.11 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
...++|||+++....+.++..|...... .++. .+... +. ..|.+++++|++|+..||++|+.+.||||+|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-~~~~--~l~q~------~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-EGYE--VLAQG------IN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFP 742 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-cCce--EEecC------CC-ccHHHHHHHHHhCCCeEEEEcceeecccccC
Confidence 4569999999999999999998753111 2333 23222 12 3678899999999999999999999999999
Q ss_pred ccc--EEEEeCCC----Cc--------------------------HHHHHHhhhcccCCCC--cEEEEEe
Q 000607 466 SCN--LVIMFDPS----RT--------------------------VCSFIQSRGRARMQNS--DYLLMVK 501 (1396)
Q Consensus 466 ~~~--lVI~fD~p----~s--------------------------~~~yiQr~GRA~R~gs--~~i~lv~ 501 (1396)
+.. +||...+| .+ ...+.|..||.-|... ..+++++
T Consensus 743 g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 743 GNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred CCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 955 45544433 21 2345699999988663 3455554
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=162.36 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=95.2
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~- 93 (1396)
...|+..|.--..+..+| ..-+.+|||.|||.-.++....++ ..++++++|+||+.|+.|.++.++++. +
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 446899999999999998 588999999999876544333232 256899999999999999999999875 2
Q ss_pred CeEEE-EeCCCCcccCCccchHHhh--ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 94 LKVGK-YWGDMGVDFWDGATWKEEM--SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 94 ~~v~~-~~G~~~~~~~~~~~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
..+.. |+|.+.... ++.....+ .+.||+|+|.|-|..... .+.--+++++++|.++.+.+.
T Consensus 155 ~~~~~~yh~~l~~~e--kee~le~i~~gdfdIlitTs~FL~k~~e--~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 155 LDVLVVYHSALPTKE--KEEALERIESGDFDILITTSQFLSKRFE--ELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cceeeeeccccchHH--HHHHHHHHhcCCccEEEEeHHHHHhhHH--HhcccCCCEEEEccHHHHHhc
Confidence 33332 777754432 22223333 369999999998876554 222247999999999988753
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=159.83 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=90.7
Q ss_pred HHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---CeEEE---Ee
Q 000607 29 ALENALKQN-TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LKVGK---YW 100 (1396)
Q Consensus 29 ~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~~---~~ 100 (1396)
+.|++-.+. +|||+.||||||.+.=-.+.+... ....+.+..+=|--|.|.-+.-.++.+...++ -.|+. |.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 333333343 899999999999873322322110 01112344566777888766666665554433 22322 22
Q ss_pred CCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC--C--
Q 000607 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET--G-- 176 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~--~-- 176 (1396)
|.. -.+..|-+||-++|+.-+.+.|+ +..++.||+||||.-. -|..|+-+.+.+..+. .
T Consensus 344 ~ti-------------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERS---vnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 344 GTI-------------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERS---VNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred ccc-------------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhcc---chHHHHHHHHHHHHHHHHHHh
Confidence 221 12578999999999999888776 7899999999999754 4556665555443211 1
Q ss_pred ---CCC-CCeEEEEeccCCCCC
Q 000607 177 ---DSN-LPRIFGMTASPIKSK 194 (1396)
Q Consensus 177 ---~~~-~p~ilgLTATp~~~~ 194 (1396)
..- .-+.+.||||.-..+
T Consensus 407 ke~~~~kpLKLIIMSATLRVsD 428 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSD 428 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecc
Confidence 111 236889999985543
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=137.01 Aligned_cols=114 Identities=28% Similarity=0.427 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
+.|...+.+.+..+. .++.++||||+++..+..+.+.|.+ .+..+.+++|. ++..++..++++|++|.
T Consensus 11 ~~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~------~~~~~~~~~~~~f~~~~ 78 (131)
T cd00079 11 DEKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGD------GSQEEREEVLKDFREGE 78 (131)
T ss_pred HHHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECC------CCHHHHHHHHHHHHcCC
Confidence 368888888888753 2678999999999999999999986 36788899998 48899999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
..+||+|+++++|+|+|.+++||.++.|++...|+|++||++|.|.
T Consensus 79 ~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 79 IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCC
Confidence 9999999999999999999999999999999999999999999984
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=157.63 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=102.9
Q ss_pred CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC-----------------CCCceeeEEecCCCC
Q 000607 366 GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR-----------------HCTWKTKYIAGNNSG 428 (1396)
Q Consensus 366 ~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~-----------------~~~~~~~~l~G~~~~ 428 (1396)
-..|+|+-.|+++|.... .-+.+.|||.++..+...|.++|.-.... +.|.....+.|.
T Consensus 1122 ~~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs--- 1197 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS--- 1197 (1567)
T ss_pred hhcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc---
Confidence 346899999999999863 45789999999999999999999854210 012222334444
Q ss_pred cCCCCHHHHHHHHHHHhcCC----eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEE
Q 000607 429 IQCQSRKKQNEIVEEFRRGL----VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMV 500 (1396)
Q Consensus 429 ~~~ms~~~r~~~l~~Fr~g~----~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv 500 (1396)
.+..+|....+.|.+-. .-.||+|.+++-|||+-++|-||.||..||+.--+|++=|+.|.|+. +|-|+
T Consensus 1198 ---t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1198 ---TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred ---ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 36788999999998632 23799999999999999999999999999999999999999999962 34455
Q ss_pred ecCC
Q 000607 501 KSGD 504 (1396)
Q Consensus 501 ~~~~ 504 (1396)
..|.
T Consensus 1275 AqGT 1278 (1567)
T KOG1015|consen 1275 AQGT 1278 (1567)
T ss_pred hccc
Confidence 5553
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-10 Score=139.43 Aligned_cols=126 Identities=19% Similarity=0.115 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|++.|.-..-..+.|+ |+-|.||.|||++|.+++...+. .++.+-+++|+--|+.|-++.+.. ++|++|
T Consensus 77 ~r~ydvQlig~l~Ll~G~-VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsv 150 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD-VIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEALGLTV 150 (764)
T ss_pred CCcchHHHHHHHHHhCCC-cccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 447788888877777665 67999999999999986653322 577799999999999998887775 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-----HhHh--hcCccccceeEEEEeccccccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-----DGLR--LSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-----~~l~--~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
+.+.+++..+ -+...-.+||+.+|..-|- +.+. ........+++.|+||++.+.=
T Consensus 151 g~i~~~~~~~------err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 151 GWITEESTPE------ERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred EEECCCCCHH------HHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9998875432 1333347999999986543 3322 1122345689999999998763
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=151.94 Aligned_cols=156 Identities=24% Similarity=0.251 Sum_probs=99.8
Q ss_pred HHHHHHHHHhc--------------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 25 YQLEALENALK--------------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 25 yQ~e~~~~~l~--------------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
||.+++..++. +++|+++++|+|||.+++.++..+....+....+.+|||||+ .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 78888886632 259999999999999999988765443222233469999999 888999999999
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhH---hhcCccccceeEEEEeccccccCCCcHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGL---RLSYFKLNMIKVLILDECHHARGKHQYACI 164 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l---~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 164 (1396)
++ .+++..+.|.... ...........+|+|+|++.+...- ....+..-++++||+||+|.+.+...- .
T Consensus 80 ~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~--~ 153 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSER----RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSK--R 153 (299)
T ss_dssp HSGT-TS-EEEESSSCHH----HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSH--H
T ss_pred cccccccccccccccccc----ccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccc--c
Confidence 98 4788888776400 1112233457899999999998110 011222245999999999999754321 1
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
..... . -..+++++|||||..+.
T Consensus 154 ~~~l~------~-l~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 154 YKALR------K-LRARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHHH------C-CCECEEEEE-SS-SSSG
T ss_pred ccccc------c-cccceEEeecccccccc
Confidence 12221 1 12678999999999875
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-10 Score=140.27 Aligned_cols=124 Identities=19% Similarity=0.067 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCeEEE
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLKVGK 98 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~v~~ 98 (1396)
|++.|.-.- .++...-|+-|.||.|||++|.+++...+. .++.+-+++|+--|+.|.++.+..+ +|++|+.
T Consensus 83 ~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 83 HFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred cchhHHHhh-hHhccCccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 444554332 334457899999999999999986543222 5777999999999999988888865 5899999
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhc------CccccceeEEEEeccccccC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLS------YFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~------~~~l~~i~llI~DEaH~~~~ 157 (1396)
+.|++... -++..-.++|+++|...|- |.|+.. ..-...+.+.|+||+|.+.=
T Consensus 157 i~~~~~~~------err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 157 VTPFQPPE------EKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred ECCCCCHH------HHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 98875433 1233335999999998862 222221 12236789999999998863
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=146.78 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=90.1
Q ss_pred cccchHHHHHHHHHHhc---C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH-HHH---H
Q 000607 19 LPFARNYQLEALENALK---Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA-EAI---K 89 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~---~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~-~~i---~ 89 (1396)
.+..|+-|.++.+.+.+ + .+++.++||+|||+++++.+... . .+++++|++||++|.+|.. +.+ .
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~---~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQ---S---DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHh---c---CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 45789999997766554 2 58899999999999998764321 1 3578999999999999983 444 4
Q ss_pred HhcCCeEEEEeCCCCc--------------------------ccC-----------------CccchHH-----------
Q 000607 90 MHTDLKVGKYWGDMGV--------------------------DFW-----------------DGATWKE----------- 115 (1396)
Q Consensus 90 ~~~~~~v~~~~G~~~~--------------------------~~~-----------------~~~~~~~----------- 115 (1396)
+.+++++..+.|..+. -.| ....|..
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 4567766665554210 000 0011222
Q ss_pred -------------hhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 116 -------------EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 116 -------------~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
....++|+|+....|...+..+.. +...+.+|||||||+.
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLM 449 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhH
Confidence 123679999999988876644322 4678999999999997
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-12 Score=114.55 Aligned_cols=80 Identities=38% Similarity=0.591 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~y 482 (1396)
++..|+. .++++..+||. |+.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|
T Consensus 3 l~~~l~~-----~~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~ 71 (82)
T smart00490 3 LAELLKE-----LGIKVARLHGG------LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASY 71 (82)
T ss_pred HHHHHHH-----CCCeEEEEECC------CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHH
Confidence 4556664 36889999997 588999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCC
Q 000607 483 IQSRGRARMQN 493 (1396)
Q Consensus 483 iQr~GRA~R~g 493 (1396)
+|+.||++|.|
T Consensus 72 ~Q~~gR~~R~g 82 (82)
T smart00490 72 IQRIGRAGRAG 82 (82)
T ss_pred HHhhcccccCC
Confidence 99999999975
|
|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-12 Score=120.70 Aligned_cols=88 Identities=26% Similarity=0.363 Sum_probs=71.8
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhhhc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQ 911 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~~~ 911 (1396)
..+.|.+|.+.|+++.|.|.+|.++++|.|.|+..++...||.+||+++||+.|.+++||||.+..-.+ +.
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~--~~------- 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRR--DP------- 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCccccCCCCcEEeecccc--cc-------
Confidence 457899999999999999999999999999998655556799999999999999999999999973332 10
Q ss_pred ccCCCCcceeeeccccccc
Q 000607 912 KQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 912 ~~~~~~~~~~~L~pelC~~ 930 (1396)
.......++||||+|.+
T Consensus 97 --~~~~~~~iyL~pElC~l 113 (117)
T cd02845 97 --RGGEKEPIYLIPELCFL 113 (117)
T ss_pred --CCCCCcEEEEchHHhhh
Confidence 11123347899999975
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-10 Score=145.57 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEE
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVI 452 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvL 452 (1396)
..+.+.|.+.....+.+++||.++......++..|...... .++. ....| ++...|.+++++|++++-.||
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-~~~~-ll~Qg-------~~~~~r~~l~~~F~~~~~~iL 808 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEEL-EGYV-LLAQG-------VSSGSRARLTKQFQQFDKAIL 808 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccc-cCce-EEecC-------CCCCCHHHHHHHHHhcCCeEE
Confidence 45555554433335568999999999999999998853111 1222 12223 222356889999999988999
Q ss_pred EEecccccccCCCc--ccEEEEeCCC
Q 000607 453 VATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 453 VaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
++|....||||+|+ +.+||.-.+|
T Consensus 809 lG~~sFwEGVD~pg~~l~~viI~kLP 834 (928)
T PRK08074 809 LGTSSFWEGIDIPGDELSCLVIVRLP 834 (928)
T ss_pred EecCcccCccccCCCceEEEEEecCC
Confidence 99999999999998 5777754433
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-08 Score=123.65 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=91.0
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHH-HHHHHHhc
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQN-EIVEEFRR 446 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~-~~l~~Fr~ 446 (1396)
...|..++++-+... ...+..+||.|.++..++.|+++|.+ .|++..++.... .+++ +++. +.
T Consensus 408 ~~~K~~Aii~ei~~~-~~~gqPVLVgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~--------~e~EA~IIa--~A 471 (925)
T PRK12903 408 KHAKWKAVVKEVKRV-HKKGQPILIGTAQVEDSETLHELLLE-----ANIPHTVLNAKQ--------NAREAEIIA--KA 471 (925)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCceeecccc--------hhhHHHHHH--hC
Confidence 357888888777664 24788999999999999999999997 378877776642 2223 3333 55
Q ss_pred CC-eeEEEEecccccccCCCccc--------EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEe
Q 000607 447 GL-VNVIVATSILEEGLDVQSCN--------LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVK 501 (1396)
Q Consensus 447 g~-~nvLVaTsvleeGiDIp~~~--------lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~ 501 (1396)
|. -.|.|||+++++|.||.--. +||-...|.|.+---|-+|||||.| |..-.+++
T Consensus 472 G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 472 GQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred CCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 64 57999999999999997543 8999999999999999999999998 33334443
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=128.44 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=88.5
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.+.|||-||..|..++.+..+.+++.-+... ..+..-.+...|-+..+|.++....-.|+..-+|||+++|-||||.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~---~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG 600 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAP---HLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIG 600 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---HHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccc
Confidence 5789999999999999888777765322110 1111111122235788899999998899999999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
..+.|+..+.|.|+..+.|..|||||.+ |-.+.++..+
T Consensus 601 ~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 601 HLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred cceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999999999999987 4444444433
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=138.27 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=97.4
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
.+.|+..+.+.|......+..++|||++....+..+...|.. .++......|. |+.+.|.+.+..|..+
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~-----~~~~~~~~~g~------~~~~~r~~s~~~~~~~ 588 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF-----KGFVFLRYDGE------MLMKIRTKSFTDFPCD 588 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh-----cccccchhhhh------hHHHHHHhhhcccccC
Confidence 588888888888854222225999999999999888887763 46777777776 6889999999999964
Q ss_pred C-e-eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc
Q 000607 448 L-V-NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495 (1396)
Q Consensus 448 ~-~-nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~ 495 (1396)
. . -.|++..++.-|+++..+++|++.|+-||+....|.+.||.|.|+.
T Consensus 589 ~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~ 638 (674)
T KOG1001|consen 589 PLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT 638 (674)
T ss_pred ccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc
Confidence 4 3 3566889999999999999999999999999999999999999974
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=111.16 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=79.6
Q ss_pred EEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.+|-+.+|+|||.-.+- ++++... .+.++|+|+|||.++....+.++.. .+..-..-.. ...
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~~~i~-----~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~---------~~~ 69 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVREAIK-----RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARM---------RTH 69 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHHHHHH-----TT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS------------
T ss_pred eEEecCCCCCCcccccHHHHHHHHH-----ccCeEEEecccHHHHHHHHHHHhcC---CcccCceeee---------ccc
Confidence 77899999999985433 3333222 5778999999999999988888743 2221111100 122
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
..+.-|-|||+..+...+.+ ...+.++++||+||||-.- |..-...++.+.. .....-+++.|||||.-..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~D---p~sIA~rg~l~~~---~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTD---PTSIAARGYLREL---AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--S---HHHHHHHHHHHHH---HHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCC---HHHHhhheeHHHh---hhccCeeEEEEeCCCCCCC
Confidence 34567889999999887665 4556899999999999753 3333344444332 1123357999999997643
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-08 Score=125.80 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=97.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-CeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-LKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.|..+-+|||||.+++-+|...+. .++.+|||+|...|..|..+.++..++ ..+..++++.+... .-..|...
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~~ 236 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLAV 236 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHHH
Confidence 444444699999999988877654 477899999999999999999999887 88999999865442 23457776
Q ss_pred hcc-CcEEEecHHHHHHhHhhcCccccceeEEEEecccccc---CCCcHH--HHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 117 MSK-HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR---GKHQYA--CIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 117 ~~~-~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~~--~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
..+ .+|||+|-.-+ |..+.++.|||+||=|... ...||. +-+..+.. ...+ -.+++-||||
T Consensus 237 ~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra-----~~~~-~~lvLgSaTP 303 (665)
T PRK14873 237 LRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA-----HQHG-CALLIGGHAR 303 (665)
T ss_pred hCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH-----HHcC-CcEEEECCCC
Confidence 654 79999998654 6778899999999999665 223441 11111211 1123 3467779999
Q ss_pred C
Q 000607 191 I 191 (1396)
Q Consensus 191 ~ 191 (1396)
.
T Consensus 304 S 304 (665)
T PRK14873 304 T 304 (665)
T ss_pred C
Confidence 4
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-09 Score=117.48 Aligned_cols=145 Identities=21% Similarity=0.170 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCC
Q 000607 26 QLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDM 103 (1396)
Q Consensus 26 Q~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~ 103 (1396)
|++-|-..+.+| ++++++||||||...=-....+ . .+....+..--|.+.-+.+.+..+....++..|.-.|-.
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~---~-~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGys 126 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY---E-LSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYS 126 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH---H-HhhccceeecCchHHHHHHHHHHHHHHhccccchhcccc
Confidence 334444444444 7799999999997632221111 1 111233555668888888888888887777766555531
Q ss_pred CcccCCccchHHhhccC-----cEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 104 GVDFWDGATWKEEMSKH-----EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-----~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
..++++ =.-.||-+.|++-.... -.+.++++||+||||.-. -...|+.+.....+.+.
T Consensus 127 -----------IrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERt---lATDiLmGllk~v~~~r-- 189 (699)
T KOG0925|consen 127 -----------IRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERT---LATDILMGLLKEVVRNR-- 189 (699)
T ss_pred -----------ccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhh---HHHHHHHHHHHHHHhhC--
Confidence 111111 11135555555432222 235789999999999653 23345556655443322
Q ss_pred CCCeEEEEeccCC
Q 000607 179 NLPRIFGMTASPI 191 (1396)
Q Consensus 179 ~~p~ilgLTATp~ 191 (1396)
.--+++.||||..
T Consensus 190 pdLk~vvmSatl~ 202 (699)
T KOG0925|consen 190 PDLKLVVMSATLD 202 (699)
T ss_pred CCceEEEeecccc
Confidence 2347999999973
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-08 Score=125.16 Aligned_cols=162 Identities=20% Similarity=0.153 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHhc-------CC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 22 ARNYQLEALENALK-------QN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~-------~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
...+|-.+++.+.. .. ++-.+.||+|||++=+-+|..+. ....+-|..|--.-|.|--|.-+.+++-+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs---d~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR---DDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC---CCCCCceEEEEccccceeccchHHHHHhc
Confidence 35699999988775 12 66788999999998776665543 33455578888888899889888888765
Q ss_pred CC---eEEEEeCCC----------------------Cc------------ccCCccc-------hH------HhhccCcE
Q 000607 93 DL---KVGKYWGDM----------------------GV------------DFWDGAT-------WK------EEMSKHEV 122 (1396)
Q Consensus 93 ~~---~v~~~~G~~----------------------~~------------~~~~~~~-------~~------~~~~~~~V 122 (1396)
++ ...++.|+. +. -.|.... |. ..+-...|
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43 233333330 00 0111110 10 11114689
Q ss_pred EEecHHHHHHhHh--h-cCc--cccc--eeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 123 LVMTPQILLDGLR--L-SYF--KLNM--IKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 123 iV~T~q~L~~~l~--~-~~~--~l~~--i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+|||+..++-... + +.. .+-. =+.|||||+|-+-.. .. ..+..+.+- ...-.-+++.||||...
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~-~~L~rlL~w----~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DL-PALLRLVQL----AGLLGSRVLLSSATLPP 636 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HH-HHHHHHHHH----HHHcCCCEEEEeCCCCH
Confidence 9999988886652 2 221 1112 368999999977431 12 223333321 11234579999999865
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-08 Score=129.97 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=106.8
Q ss_pred ccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 20 PFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
..+|-.|..++..+.+ ++.+|+.-||||||++.+.+...+.+. +..+.++|||.++.|-.|..+.+
T Consensus 247 ~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f 323 (962)
T COG0610 247 KYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEF 323 (962)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHH
Confidence 3356666666663332 149999999999999988777766554 56778999999999999999999
Q ss_pred HHhcCCeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHH
Q 000607 89 KMHTDLKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACI 164 (1396)
Q Consensus 89 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~i 164 (1396)
..+.......- . .-+.......+. ...|+|+|-|.|-..+... ...-.+--++|+||||+.-.. ..+..
T Consensus 324 ~~~~~~~~~~~-~-----~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~ 396 (962)
T COG0610 324 QSFGKVAFNDP-K-----AESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKL 396 (962)
T ss_pred HHHHHhhhhcc-c-----ccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHH
Confidence 98753222111 1 112334444444 3489999999999887653 112233458899999998643 23333
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCCCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSKVS 196 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~ 196 (1396)
|+..+ ..-..+|+|+||+.....
T Consensus 397 ~~~~~---------~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 397 LKKAL---------KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHHh---------ccceEEEeeCCccccccc
Confidence 43333 124689999999986543
|
|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-10 Score=116.81 Aligned_cols=106 Identities=32% Similarity=0.416 Sum_probs=86.8
Q ss_pred cccccCcEEecCcCC--eeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 831 TCKIHNSLVCTPHNG--QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 831 ~~~~~~~~V~~~~~~--~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
...++|..|.+.|++ +.|.|.+|.++.+|.+.|+..++...||.+||+.+||++|.+++||+|.++...+.
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~------- 98 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKK------- 98 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT---SSTTSEEEEECSTTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhcccccCCCCeEEeccCCCC-------
Confidence 456899999999998 89999999999999999987657888999999999999999999999998844321
Q ss_pred hhcccCCCCcceeeecccccccccccccHHHHHHhhhhhhHHHHHHH
Q 000607 909 RQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQS 955 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~~~~p~~~~~~~~~~~lPsi~~~~~~ 955 (1396)
..+++|||+|.+ .|.+...+......||+|+|.++
T Consensus 99 ----------~~~~lP~Elc~i--~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 99 ----------QPIYLPPELCFI--VPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp ----------TCEEEECCGEEE--ETTTBB-SS--HHHHHHHHHHHS
T ss_pred ----------ceEEEChhHhcc--cCCcHHHHhccHHHHHHHHHHHh
Confidence 236799999965 79999999999999999999874
|
It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A .... |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-09 Score=129.89 Aligned_cols=142 Identities=21% Similarity=0.251 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH----HHhcCCeEE
Q 000607 24 NYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI----KMHTDLKVG 97 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i----~~~~~~~v~ 97 (1396)
+.|...++...+. |++|.+|+|||||.+|-+++.. .....+++.++|.-+.+.-++..+ ...+|+.+.
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 3444444444443 6999999999999999875532 335678999999987777655544 445689999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--------cHHHHHHHHH
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--------QYACIMTEFY 169 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--------~~~~im~~f~ 169 (1396)
.++|+...+ .+.+...+|+++||+.+-.+ + ....+++.|.||.|...+.+ +.+.|...+.
T Consensus 1220 ~l~ge~s~~-------lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1220 KLTGETSLD-------LKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred ecCCccccc-------hHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH
Confidence 999998777 56777899999999998654 3 56789999999999998531 2333333332
Q ss_pred HhhccCCCCCCCeEEEEeccCCC
Q 000607 170 HRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+.-|+++||-+..+
T Consensus 1288 ---------k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1288 ---------KKIRVVALSSSLAN 1301 (1674)
T ss_pred ---------hheeEEEeehhhcc
Confidence 34578888877655
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-07 Score=120.64 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh----cC
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR----RG 447 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr----~g 447 (1396)
...+.+.+..... ...+++||..+....+.++..|... .+. ...+.|.. .+.++++.|+ .|
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~----~~~-~ll~Q~~~---------~~~~ll~~f~~~~~~~ 584 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD----LRL-MLLVQGDQ---------PRQRLLEKHKKRVDEG 584 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh----cCC-cEEEeCCc---------hHHHHHHHHHHHhccC
Confidence 4455555555433 3445899999999999999888742 122 23344431 3567887776 46
Q ss_pred CeeEEEEecccccccCCCc--ccEEEEeCCC
Q 000607 448 LVNVIVATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
+-.||++|....||||+|+ |.+||...+|
T Consensus 585 ~~~VL~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 585 EGSVLFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred CCeEEEEeccccccccCCCCceEEEEEEcCC
Confidence 7789999999999999987 8888865544
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-07 Score=115.41 Aligned_cols=125 Identities=21% Similarity=0.138 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH---HhcCCeEE
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK---MHTDLKVG 97 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~---~~~~~~v~ 97 (1396)
.|++.|.-.. .++.++-|+-|.||-|||++|++++. +.-+ .|+.|-|++++..|+.+-++.+. +++|+.|+
T Consensus 76 r~ydvQlig~-l~L~~G~IaEm~TGEGKTL~a~l~ay--l~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg 149 (870)
T CHL00122 76 RHFDVQLIGG-LVLNDGKIAEMKTGEGKTLVATLPAY--LNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVG 149 (870)
T ss_pred CCCchHhhhh-HhhcCCccccccCCCCchHHHHHHHH--HHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCcee
Confidence 3556665554 34456789999999999999987654 2211 46779999999999998655554 57899999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHH-----HHhHhh--cCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-----LDGLRL--SYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-----~~~l~~--~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+++... -++..=.+||+.+|..-| .+.+.. .......+.+.|+||++.+.=
T Consensus 150 ~i~~~~~~~------err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 150 LIQEGMSSE------ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred eeCCCCChH------HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 998875443 123333689999998644 333321 112345689999999998763
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.2e-09 Score=118.31 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc--CCeeEEEEecccccccC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--GLVNVIVATSILEEGLD 463 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--g~~nvLVaTsvleeGiD 463 (1396)
++.+++-|... ....+...+.+. .+.++.++.|+ +++..|..--..|.+ ++++|||||++.+.|+|
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~----g~~k~aVIYGs------LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKA----GNHKCAVIYGS------LPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHh----cCcceEEEecC------CCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 45555556543 334455556654 45679999998 588888888899987 99999999999999999
Q ss_pred CCcccEEEEeCCC---------CcHHHHHHhhhcccCCCCc
Q 000607 464 VQSCNLVIMFDPS---------RTVCSFIQSRGRARMQNSD 495 (1396)
Q Consensus 464 Ip~~~lVI~fD~p---------~s~~~yiQr~GRA~R~gs~ 495 (1396)
+ ++.-||.+++- -+..+..|-.|||||.||+
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 9 78889988764 4667889999999999864
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-07 Score=118.61 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe-eE
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV-NV 451 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~-nv 451 (1396)
..+...+.........+++||+.+....+.+.+.+... .........|.. .+.+.+++|+.+.- -+
T Consensus 465 ~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~----~~~~~v~~q~~~---------~~~~~l~~f~~~~~~~~ 531 (654)
T COG1199 465 AKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDE----RSTLPVLTQGED---------EREELLEKFKASGEGLI 531 (654)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhc----CccceeeecCCC---------cHHHHHHHHHHhcCCeE
Confidence 33344443332223449999999999999999998853 111233444442 34589999988655 89
Q ss_pred EEEecccccccCCCc--ccEEEEeCC------------------------------CCcHHHHHHhhhcccCCCC--cEE
Q 000607 452 IVATSILEEGLDVQS--CNLVIMFDP------------------------------SRTVCSFIQSRGRARMQNS--DYL 497 (1396)
Q Consensus 452 LVaTsvleeGiDIp~--~~lVI~fD~------------------------------p~s~~~yiQr~GRA~R~gs--~~i 497 (1396)
+|+|..+.||||+|. +..||.... |.......|.+||+-|..+ .++
T Consensus 532 lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 532 LVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 999999999999998 666774333 3345667899999988553 455
Q ss_pred EEEe
Q 000607 498 LMVK 501 (1396)
Q Consensus 498 ~lv~ 501 (1396)
++++
T Consensus 612 vllD 615 (654)
T COG1199 612 VLLD 615 (654)
T ss_pred EEec
Confidence 5554
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=111.98 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhc-CC---CCC---------ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---e
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELL-PR---HCT---------WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---V 449 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~-p~---~~~---------~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~ 449 (1396)
-+.++|||.....+...|..+|.+.. |- ..| .....+.|. .+..+|++.+++|.+.- .
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~------t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGT------TSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCC------cccchHHHHHHhccCCCCcee
Confidence 47899999999999999999988642 10 001 111223343 36688999999998632 2
Q ss_pred eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 450 NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 450 nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
-+|++|....-|||+-..|-+|.||..|++.--.|.+-|+-|.|+
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ 836 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQ 836 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcC
Confidence 578899999999999999999999999999999999999999996
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-07 Score=110.76 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=82.2
Q ss_pred hcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH---HHHHHHHhcCCeEEEEeCCCCcccCCc
Q 000607 34 LKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ---QAEAIKMHTDLKVGKYWGDMGVDFWDG 110 (1396)
Q Consensus 34 l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q---~~~~i~~~~~~~v~~~~G~~~~~~~~~ 110 (1396)
+...-|+-|.||-|||++|.+++.--+ -.|+.|-++++.--|+.. |...+-+++|+.|+.+.+++...
T Consensus 97 Lh~G~IAEM~TGEGKTL~atlpaylnA-----L~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~---- 167 (939)
T PRK12902 97 LHEGQIAEMKTGEGKTLVATLPSYLNA-----LTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPE---- 167 (939)
T ss_pred hcCCceeeecCCCChhHHHHHHHHHHh-----hcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChH----
Confidence 345789999999999999987654211 156679999999999987 55555567899999998865432
Q ss_pred cchHHhhccCcEEEecHHHH-----HHhHhh--cCccccceeEEEEeccccccC
Q 000607 111 ATWKEEMSKHEVLVMTPQIL-----LDGLRL--SYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 111 ~~~~~~~~~~~ViV~T~q~L-----~~~l~~--~~~~l~~i~llI~DEaH~~~~ 157 (1396)
-+...-.+||+.+|...| .|.+.. .......+++.|+||++.+.=
T Consensus 168 --err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 168 --ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred --HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 233334799999999777 444432 223346789999999998863
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=124.89 Aligned_cols=129 Identities=23% Similarity=0.244 Sum_probs=87.3
Q ss_pred HHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc------CC
Q 000607 26 QLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT------DL 94 (1396)
Q Consensus 26 Q~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~------~~ 94 (1396)
|.++++.+.+ + .+++.++||+|||+++++.+...+. ...+++++|++||++|..|+.+.+.... ++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~---~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i 78 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK---ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPV 78 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH---hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCe
Confidence 6666665543 2 5889999999999999986543322 2236789999999999999998777543 34
Q ss_pred eEEEEeCCCCc---------------------ccC---------------------------------------C-cc--
Q 000607 95 KVGKYWGDMGV---------------------DFW---------------------------------------D-GA-- 111 (1396)
Q Consensus 95 ~v~~~~G~~~~---------------------~~~---------------------------------------~-~~-- 111 (1396)
++..+.|..+. ..| . ..
T Consensus 79 ~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~ 158 (636)
T TIGR03117 79 QAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVT 158 (636)
T ss_pred eEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhh
Confidence 55554444110 000 0 00
Q ss_pred -------------chHHh---hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 112 -------------TWKEE---MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 112 -------------~~~~~---~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
..+.. ...++|||+++..|...+..+.-.+...+.+|||||||+.+
T Consensus 159 ~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 159 LAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 01111 45789999999999987655433456689999999999974
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=101.16 Aligned_cols=68 Identities=25% Similarity=0.488 Sum_probs=59.1
Q ss_pred cCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhh
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1322 ~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1391 (1396)
..|||+.||||+|..+... .|....+.|+ +.|++.|.++|..++ +|.|.|||+|++.||+.||+.|..
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g-~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVA-TASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEE-EEEeCCHHHHHHHHHHHHHHHHHh
Confidence 3699999999999987766 5776666563 569999999999998 999999999999999999999864
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.5e-08 Score=109.21 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.||+.|.++.+.+.+ + ++|+.+|||+|||+.+++.+..++...... ++.++++.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999997776654 3 799999999999999988553332211110 2247999999999988876666653
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.5e-08 Score=109.21 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.||+.|.++.+.+.+ + ++|+.+|||+|||+.+++.+..++...... ++.++++.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999997776654 3 799999999999999988553332211110 2247999999999988876666653
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-08 Score=85.20 Aligned_cols=65 Identities=28% Similarity=0.290 Sum_probs=55.1
Q ss_pred CchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHh
Q 000607 1324 HPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1324 ~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1389 (1396)
||++.|+|+|+++++..+.|......|+ ..|+|.|.++|...+ +|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITG-EGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEE-EeecCCHHHHHHHHHHHHHHhC
Confidence 7999999999998776666776444442 579999999997777 8999999999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-08 Score=117.79 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=75.5
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhhhc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQ 911 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~~~ 911 (1396)
..+.|.+|.|.|||+.|.+.+|+++.+|+|.|...++ ..||.+||+.+|+++|.+.+||+|..+.-.++.
T Consensus 282 ~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--------- 351 (845)
T KOG1042|consen 282 KNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--------- 351 (845)
T ss_pred HHhcceEEEEecCCceeeeeccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---------
Confidence 3478899999999999999999999999999987555 789999999999999999999999877444321
Q ss_pred ccCCCCcceeeecccccccccccccHHHH
Q 000607 912 KQKEPSKISFELPPELCRIIMAPISLSTF 940 (1396)
Q Consensus 912 ~~~~~~~~~~~L~pelC~~~~~p~~~~~~ 940 (1396)
+........|+||||++ --+...+-
T Consensus 352 --~g~~~q~~~lIPELc~~--TGLtd~mr 376 (845)
T KOG1042|consen 352 --KGEPPQLAMLIPELCFL--TGLTDEMR 376 (845)
T ss_pred --CCCCccceeeehhhhhc--cCCcHHHH
Confidence 12223346899999975 34444444
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=84.92 Aligned_cols=64 Identities=30% Similarity=0.383 Sum_probs=55.0
Q ss_pred chhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHh
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1325 p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1389 (1396)
|++.|+|+|++.++.++++.....++. ..|.|+|+++|..++ .|.|.|||+||..||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYG-EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEe-EeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999988776544444432 479999999999998 8999999999999999999986
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-08 Score=84.60 Aligned_cols=64 Identities=28% Similarity=0.288 Sum_probs=54.4
Q ss_pred chhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1325 p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
|++.|+|+|+++++ .+.|......| ...|+|.|.++|+.++ +|.|.||++||+.||+.||+.|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTG-EGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEE-EeccCCHHHHHHHHHHHHHHhcC
Confidence 78999999999998 55566655334 3479999999998887 89999999999999999999873
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.2e-08 Score=97.93 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHhhhccccccCccc----ccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHH
Q 000607 1304 VFQSIRPLLEPMITPET----MRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKT 1376 (1396)
Q Consensus 1304 ~~~~~~~~l~~~~~~~~----~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~ 1376 (1396)
--+++.+++.+.+.... -..||++.|+||||+.+... ++ ...+.| .+.|+|.|.++|+.++ +|.|.|||+
T Consensus 86 ~~~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~-y~-~i~~~Gp~H~p~F~v~V~I~g~~~g-~G~G~SKKe 162 (183)
T PHA03103 86 SMREDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDW-SI-NITSSGPSHSPTFTASVIISGIKFK-PAIGSTKKE 162 (183)
T ss_pred hHHHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCe-EE-EEEeeCCCCCceEEEEEEECCEEEE-EeeeCCHHH
Confidence 33455555555443211 13689999999999877653 33 333345 3569999999999998 899999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000607 1377 AKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1377 Ak~~AA~~AL~~L~~ 1391 (1396)
|++.||+.||+.|..
T Consensus 163 AEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 163 AKNNAAKLAMDKILN 177 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
|
|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=90.87 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=65.2
Q ss_pred cccccCcEEecCcC--CeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 831 TCKIHNSLVCTPHN--GQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 831 ~~~~~~~~V~~~~~--~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
...++|..|.+.|+ ++.|.|.++.+..++.+ |+..++...||++||+++||+.+.+++||+|.+...++
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~-------- 100 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKERYNLTLTDLNQPLLIVKFSSK-------- 100 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHHcCCcccCCCCCEEEecCccc--------
Confidence 34578888999997 67999999987666655 65555667899999999999999999999999885432
Q ss_pred hhcccCCCCcceeeeccccccc
Q 000607 909 RQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++||||+|.+
T Consensus 101 --------~~~~~~lp~Elc~i 114 (115)
T cd02825 101 --------KSYSILLPPELCVI 114 (115)
T ss_pred --------CCCceEEchheEEe
Confidence 01235799999964
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-05 Score=95.58 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++-+.+. ...+..+||-+.++...+.|+++|.. .+++..++.... ..++ .+++. +.|
T Consensus 610 ~~eK~~Aii~ei~~~-~~~GrPVLVGT~SVe~SE~lS~~L~~-----~gI~H~VLNAK~------h~~E-AeIVA--~AG 674 (1112)
T PRK12901 610 KREKYNAVIEEITEL-SEAGRPVLVGTTSVEISELLSRMLKM-----RKIPHNVLNAKL------HQKE-AEIVA--EAG 674 (1112)
T ss_pred HHHHHHHHHHHHHHH-HHCCCCEEEEeCcHHHHHHHHHHHHH-----cCCcHHHhhccc------hhhH-HHHHH--hcC
Confidence 357888888877764 25788999999999999999999997 477766665542 1112 23333 344
Q ss_pred C-eeEEEEecccccccCCC--------cccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 448 L-VNVIVATSILEEGLDVQ--------SCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 448 ~-~nvLVaTsvleeGiDIp--------~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
. -.|-|||+++++|.||. .-=+||--..+.|.+---|-+|||||.|
T Consensus 675 ~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG 729 (1112)
T PRK12901 675 QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG 729 (1112)
T ss_pred CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC
Confidence 4 46899999999999996 2346888899999999999999999998
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=98.90 Aligned_cols=139 Identities=18% Similarity=0.086 Sum_probs=84.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.+|-+|+|||||... ++++.+... .++.+++++...+.|+.+.+..++...--....|....+.. -..
T Consensus 52 ~vVRSpMGTGKTtaL---i~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~--------i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL---IRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI--------IDG 119 (824)
T ss_pred EEEECCCCCCcHHHH---HHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc--------ccc
Confidence 689999999999864 444433322 45778999999999999999999865211222222221110 000
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH--hhccCCCCCCCeEEEEeccCCC
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH--RLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~--~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
...+-+++..+.|.+.... .++++++||+||+--..+. -|..-|+..-. ..+.......++++.|-|+...
T Consensus 120 ~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred cccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 1356677777777655321 2467999999999777653 33333332110 0111123456899999998744
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=104.94 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=41.6
Q ss_pred CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
..+.|++-+++-||.|-|++=.+.-++...|...-.|-+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 588999999999999999999999999999999999999998773
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.8e-06 Score=90.94 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYL---LRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~---~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+.+.|.+++..++..+ ++|.+|.|+|||.+.+.++..+... .....++++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 5689999999999985 8999999999998777766655221 1134678899999999999999988887
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-06 Score=103.06 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+-+||.|.+..+.. + +.|+++++|.|||..++..+..+..... ...-.++++|--..+. |-.++.... ..
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~--~~~P~Lv~ap~sT~~n-we~e~~~wap~~ 371 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIH--SPGPPLVVAPLSTIVN-WEREFELWAPSF 371 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccC--CCCCceeeccCccccC-CCCchhccCCCc
Confidence 356999999987775 3 7999999999999987765554433221 2233677788755544 344444333 45
Q ss_pred eEEEEeCCCCccc------CC-----------ccchHH-hhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 95 KVGKYWGDMGVDF------WD-----------GATWKE-EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 95 ~v~~~~G~~~~~~------~~-----------~~~~~~-~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
.+..+.|...... ++ ...|.. ..-..+|.+.+|..... ....+..-+++++|+||+|++.
T Consensus 372 ~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~livde~~rlk 449 (696)
T KOG0383|consen 372 YVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLLIVDEAHRLK 449 (696)
T ss_pred ccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhcceeEeechhhcc
Confidence 5555666522110 00 011211 11145677777765542 2223445579999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
++. ..++... .....-+.+++|+||..++
T Consensus 450 n~~------s~~f~~l---~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 450 NKQ------SKRFRVL---TAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred cch------hhhhhhc---cccccchhhhccCCcchhh
Confidence 763 2222111 2334456789999998754
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=88.52 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=64.2
Q ss_pred ccCCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1321 MRFHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1321 ~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
...||+.+|+++||.++|+.|.|+...+.|.+ .|+..|.+++.+ .+|+|.|||.||+.||++.|..|...-|
T Consensus 140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~--~~GkG~sKKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT--EEGKGPSKKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee--eecCCchHHHHHHHHHHHHHHHhccCCC
Confidence 35899999999999999999999999999854 499999999987 4899999999999999999999985443
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=97.68 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC--CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc---
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR--HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--- 446 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~--~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--- 446 (1396)
...+.+.|.+........++||.++-...+.+...+.+.... +...+..++-+.. ..++.+++++|+.
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-------~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-------AQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-------cchHHHHHHHHHHHHh
Confidence 345566665543344578899999999988888877642100 0011334444432 1467889999965
Q ss_pred -CCeeEEEEe--cccccccCCCc--ccEEEEeCCCC
Q 000607 447 -GLVNVIVAT--SILEEGLDVQS--CNLVIMFDPSR 477 (1396)
Q Consensus 447 -g~~nvLVaT--svleeGiDIp~--~~lVI~fD~p~ 477 (1396)
|.-.||+|+ ..+.||||+++ |..||...+|.
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699999 78999999998 88899888775
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=69.90 Aligned_cols=68 Identities=28% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEE---------EEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFE---------HTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1323 ~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~---------~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
.||++.|.++|++++|..|.|....+.|+. .|++.|.|.+.... ..-...++++||..||+.||..|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999887666643 58889988875541 012346899999999999999874
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=81.44 Aligned_cols=126 Identities=23% Similarity=0.145 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCe
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~ 95 (1396)
...|++-|.-+.-...+|+ |+.+.||=|||+++.++....+ + .|+.|=|++...-|+..-++.++. ++|+.
T Consensus 75 g~~p~~vQll~~l~L~~G~-laEm~TGEGKTli~~l~a~~~A--L---~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGls 148 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR-LAEMKTGEGKTLIAALPAALNA--L---QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLS 148 (266)
T ss_dssp S----HHHHHHHHHHHTTS-EEEESTTSHHHHHHHHHHHHHH--T---TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--
T ss_pred CCcccHHHHhhhhhcccce-eEEecCCCCcHHHHHHHHHHHH--H---hcCCcEEEeccHHHhhccHHHHHHHHHHhhhc
Confidence 3457888888886554545 9999999999999987554222 2 467788899998999986666654 57999
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhcC------ccccceeEEEEecccccc
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLSY------FKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~~------~~l~~i~llI~DEaH~~~ 156 (1396)
++.+.+++..+ -+...-.++|+.+|...|. +.|+... .....++++|+|||+.+.
T Consensus 149 v~~~~~~~~~~------~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 149 VGIITSDMSSE------ERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEEETTTEHH------HHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cccCccccCHH------HHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999986432 1223336899999998776 3343221 124678999999999877
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=97.68 Aligned_cols=141 Identities=23% Similarity=0.257 Sum_probs=102.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc-------------C--CCCcEEEEEeCCcccHHHHHHHHHHhc--CCeEEEE
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR-------------K--PSPFVAVFLVPKVVLVPQQAEAIKMHT--DLKVGKY 99 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~-------------~--~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~ 99 (1396)
.++++...|+|||..-+.+.. ..... . ...+-+||++|. ++..||.++|.+|. +++|..|
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l--~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILEL--SDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred ceeehhhhhccchHHHHHHHH--hcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 478999999999997654332 22100 0 034669999999 88899999999997 3588888
Q ss_pred eCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--------------Cccc------cceeEEEEeccccccCCC
Q 000607 100 WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--------------YFKL------NMIKVLILDECHHARGKH 159 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--------------~~~l------~~i~llI~DEaH~~~~~~ 159 (1396)
.|- ....|... .++.++||||+||.+|.+-+.|. +.+. =.|=-|++|||+..-...
T Consensus 453 ~Gi-rk~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 453 FGI-RKTFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred ech-hhhcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 886 44455554 66779999999999999877654 1111 112247899999998877
Q ss_pred cHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCC
Q 000607 160 QYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 160 ~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
++..-|...+++ -...+.||||+.+
T Consensus 529 S~~a~M~~rL~~---------in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA---------INRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHHhhh---------hceeeecCCchhh
Confidence 777777666654 3578999999875
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0002 Score=79.73 Aligned_cols=153 Identities=20% Similarity=0.127 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-+-|.|++-.|-+ ...++-+.||.||..+...+|.+ .+.+ +.++.+++..+..|...-.+.++.
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~--n~l~--Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILE--NWLR--GRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHH--HHHc--CCCceEEEECChhhhhHHHHHHHH
Confidence 56789998876642 25899999999998877766652 2232 345678888888998888888886
Q ss_pred hcC--CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh---cCccc---------cceeEEEEecccccc
Q 000607 91 HTD--LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL---SYFKL---------NMIKVLILDECHHAR 156 (1396)
Q Consensus 91 ~~~--~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~---~~~~l---------~~i~llI~DEaH~~~ 156 (1396)
... +.+..+.. |... ...-....|+++||..|...-.. ...++ +--.+|||||||+++
T Consensus 114 IG~~~i~v~~l~~------~~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 114 IGADNIPVHPLNK------FKYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred hCCCcccceechh------hccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 542 22222211 1100 00111467999999999876431 11111 123599999999999
Q ss_pred CCCcH-----H--HHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 157 GKHQY-----A--CIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 157 ~~~~~-----~--~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+-..- + ....... . .-+.-|++-.|||...
T Consensus 186 n~~~~~~~~sk~g~avl~LQ-~-----~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQ-N-----RLPNARVVYASATGAS 222 (303)
T ss_pred CCCccCccccHHHHHHHHHH-H-----hCCCCcEEEecccccC
Confidence 75321 1 1111111 1 1234579999999865
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.008 Score=71.41 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccc--cccc
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSIL--EEGL 462 (1396)
Q Consensus 385 ~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvl--eeGi 462 (1396)
....++|||+++-..--.|...|++ .++....++--+ +.++...+-..|.+|+.++|+-|.=+ =+=.
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~-----~~~sF~~i~EYt------s~~~isRAR~~F~~G~~~iLL~TER~HFfrRy 366 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK-----ENISFVQISEYT------SNSDISRARSQFFHGRKPILLYTERFHFFRRY 366 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh-----cCCeEEEecccC------CHHHHHHHHHHHHcCCceEEEEEhHHhhhhhc
Confidence 4567899999999888889999985 477877776654 77888899999999999999999643 3556
Q ss_pred CCCcccEEEEeCCCCcHHHHHHhhhcccCCC--------CcEEEEEecCCcchHHHH
Q 000607 463 DVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--------SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 463 DIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--------s~~i~lv~~~~~~~~~~i 511 (1396)
.|..+..||.|.+|.++.-|-.-.+-..... ..+.++.+.-|.-..++|
T Consensus 367 ~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 367 RIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred eecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 7888999999999999877766554433322 467778776654444443
|
; GO: 0005634 nucleus |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=85.39 Aligned_cols=135 Identities=22% Similarity=0.209 Sum_probs=93.6
Q ss_pred cCCCcccchHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 15 SADTLPFARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
+......+..-|..|++.++.+- .||.+|+|+|||.+...++.++++. ....+|+.+|+..-|+|.++.|.+. |
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~t-g 478 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHKT-G 478 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHhc-C
Confidence 33334557889999999999984 9999999999999998888877664 3445999999999999999999874 5
Q ss_pred CeEEEEeCCCCc------------------------------------ccCCc--------cchHHhhccCcEEEecHHH
Q 000607 94 LKVGKYWGDMGV------------------------------------DFWDG--------ATWKEEMSKHEVLVMTPQI 129 (1396)
Q Consensus 94 ~~v~~~~G~~~~------------------------------------~~~~~--------~~~~~~~~~~~ViV~T~q~ 129 (1396)
++|.-++....- +..+. ..-.+.+..++||.||.-.
T Consensus 479 LKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~ 558 (935)
T KOG1802|consen 479 LKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVG 558 (935)
T ss_pred ceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccc
Confidence 666544332100 00000 0123344578999999632
Q ss_pred HHHhHhhcCccccceeEEEEeccccccCC
Q 000607 130 LLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 130 L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
.-+. .++-.++..+++||+-.+...
T Consensus 559 Agd~----rl~~~kfr~VLiDEaTQatEp 583 (935)
T KOG1802|consen 559 AGDR----RLSKFKFRTVLIDEATQATEP 583 (935)
T ss_pred ccch----hhccccccEEEEecccccCCc
Confidence 2211 122246789999999988764
|
|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.2e-05 Score=72.30 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=61.3
Q ss_pred cccCcEEecCcC---CeeEEEEeecCCCCCCCcCccCCC-CcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 833 KIHNSLVCTPHN---GQIYCITGVLGHLNANSLFTRNNG-SVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 833 ~~~~~~V~~~~~---~~~Y~v~~i~~dl~p~s~~~~~~~-~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
.+++..|.+.|. ++.|.|.++..+..+...|+..++ ...|+.+||+.+|++.+.++++|+|.+..-
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g~~---------- 100 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVGRK---------- 100 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeCCC----------
Confidence 356766777776 689999999887777778875444 367999999999999999999999987611
Q ss_pred hhcccCCCCcceeeeccccccc
Q 000607 909 RQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++|+|+|.+
T Consensus 101 ---------~~~~~~P~Elc~i 113 (114)
T cd02846 101 ---------GKPNYLPMELCNI 113 (114)
T ss_pred ---------CCCcEecceeEEe
Confidence 1124699999964
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=76.04 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=119.7
Q ss_pred CCHHHHHHHhcccCcc-------------------ccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccc
Q 000607 976 IPTIKVLEAITTKKCQ-------------------EDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIIS 1036 (1396)
Q Consensus 976 ~~~~~l~~AlT~~s~~-------------------~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1036 (1396)
+..+.++.|||-+|+. ...+|+-|--.|-.|+.+.++.++-++||..++..++.+-.-+++
T Consensus 77 is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ 156 (333)
T KOG3769|consen 77 ISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLG 156 (333)
T ss_pred ccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhh
Confidence 4446677777776653 123899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh
Q 000607 1037 NAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116 (1396)
Q Consensus 1037 n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~ 1116 (1396)
.+.|+.+|..+|+.++++++.|.+. +. ...+++.++++-||+|+++...|.
T Consensus 157 ee~LahiAt~lGie~l~~seeFp~~-----~e------------------------isq~ess~~aI~Al~~~~~~ek~~ 207 (333)
T KOG3769|consen 157 EEVLAHIATHLGIEELGLSEEFPKV-----GE------------------------ISQDESSRRAIGALLGSVGLEKGF 207 (333)
T ss_pred HHHHHHHHHHhhHHHHhhcccCCCc-----hh------------------------hhHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999998877421 11 023488999999999999999998
Q ss_pred hHHHHHHhhcCccccCCCcccccccccChhhHHhHHHHHHHcCcccCCHHHHHHH
Q 000607 1117 NVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEA 1171 (1396)
Q Consensus 1117 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~f~~~~ll~~A 1171 (1396)
..+.+|+.-=-...++....+ .... .....+..+.++.|.+=--+.|+.++
T Consensus 208 ~~v~dFI~~qi~~k~L~~~~m---~ql~-~P~~~L~~lckr~~l~epe~Rll~es 258 (333)
T KOG3769|consen 208 NFVRDFINDQILSKDLDPREM---WQLQ-WPRRLLSRLCKRRGLKEPESRLLAES 258 (333)
T ss_pred HHHHHHHHHHhhhhccchHhh---cccc-chHHHHHHHHHHcCCCCchhHHHHHh
Confidence 888888643211111110000 0000 11245677778888776666777665
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.011 Score=74.63 Aligned_cols=111 Identities=20% Similarity=0.175 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..+.++-+... ...+..+||-+.+...++.++++|.+. +++-.++.-.. ..|+.-+-.+ .|
T Consensus 411 ~~~K~~Aiv~~I~~~-~~~gqPvLvgT~sie~SE~ls~~L~~~-----~i~h~VLNAk~--------h~~EA~Iia~-AG 475 (822)
T COG0653 411 EEEKFKAIVEDIKER-HEKGQPVLVGTVSIEKSELLSKLLRKA-----GIPHNVLNAKN--------HAREAEIIAQ-AG 475 (822)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEcCcceecchhHHHHHHhc-----CCCceeecccc--------HHHHHHHHhh-cC
Confidence 356777777766663 357889999999999999999999974 66666665543 2334333333 34
Q ss_pred C-eeEEEEecccccccCCCccc-----------EEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 448 L-VNVIVATSILEEGLDVQSCN-----------LVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 448 ~-~nvLVaTsvleeGiDIp~~~-----------lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+ --+-|||+++++|-||.--. +||--....|-+---|-+||+||.|
T Consensus 476 ~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 476 QPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred CCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 4 35889999999999995433 3555555556555569999999998
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00017 Score=85.58 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
-++|.+..|||||++|+.+++.+ .....+..++++++..+|.......+.... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l---~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~~-------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL---QNSEEGKKVLYLCGNHPLRNKLREQLAKKY-------NPK-------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh---hccccCCceEEEEecchHHHHHHHHHhhhc-------ccc--------------
Confidence 37899999999999999888766 223356779999999999888888777643 000
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.....+..+..+.+.+.........+++|||||||++..
T Consensus 59 --~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 --LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 122334555555544332234457899999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00029 Score=62.77 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHHHHHhc-CC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 28 EALENALK-QN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 28 e~~~~~l~-~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
|++..++. ++ ++|.+|.|||||.+++-.+.++......+ ++++++++|++..+.+..+.+
T Consensus 1 ~av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 1 EAVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CHHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 35665555 44 56799999999988887777665433334 788999999998888877777
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00028 Score=78.15 Aligned_cols=69 Identities=25% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1323 ~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
..|++.|+|++.+.+..+. |++.+++|+. .|+++|.|+... ++|.|.|||.||++||+.+|+.|+.--|
T Consensus 38 KS~IS~l~E~~~r~~~~v~-fevl~eeGp~H~~~fv~rvtvg~~~--a~GeG~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPV-YEVLREEGPPHMPNFVFRVTVGEIT--ATGEGKSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred CChHHHHHHHHHHhCCCcc-eeeeeccCCccCCCeEEEEEEeeeE--EecCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 7899999999999887655 6777877754 499999999543 5999999999999999999999986443
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0015 Score=80.27 Aligned_cols=152 Identities=23% Similarity=0.246 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCC-EEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 25 YQLEALENALKQN-TIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 25 yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
|-.++++....++ ++|-..||+|||..... ++..+.+.. .....-+.+--|++..+.-.++.+.+.-+..++..+|-
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-NGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-ccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 4444554444554 88999999999766554 444333211 11223356666888777777777766554444444443
Q ss_pred CCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 103 MGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
++.. ..... .--|++||-+.+++++..+. ..++++|+||.|..--+..+-.++..-.. .....
T Consensus 461 -~vRf------~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~-----~ty~d 525 (1282)
T KOG0921|consen 461 -NVRF------DSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMI-----STYRD 525 (1282)
T ss_pred -cccc------cccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhh-----ccchh
Confidence 1111 11111 34588999999999988764 47889999999987766555544322110 11233
Q ss_pred CeEEEEeccCCC
Q 000607 181 PRIFGMTASPIK 192 (1396)
Q Consensus 181 p~ilgLTATp~~ 192 (1396)
-++++|+||...
T Consensus 526 l~v~lmsatIdT 537 (1282)
T KOG0921|consen 526 LRVVLMSATIDT 537 (1282)
T ss_pred hhhhhhhcccch
Confidence 467889998754
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00069 Score=85.96 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..+-+.|.+++..++.. .++|.+|+|+|||.+++.++.++.. .++++++++||..-|.+..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 34789999999999974 6899999999999998887776543 3558999999998888888888763
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00039 Score=82.61 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 21 FARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.+-+-|..++..+.+. + .+|.+|+|+|||.+-+.+|..+.. .++++++++||..-++...+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-----~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-----QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-----cCCeEEEEcCchHHHHHHHHHhc
Confidence 4788999999999987 5 889999999999998888876644 46889999999988888877543
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00016 Score=90.11 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=85.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
|..+-+|||+|||..|-+.+... ....++.++++++|.++|+..-.+...+.. |++++..+|+...+
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~---~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd------- 1014 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRA---LSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD------- 1014 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHH---hccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC-------
Confidence 68899999999999998866543 234567889999999999887555554322 78899999986555
Q ss_pred HHhhccCcEEEecHHHHHHhHh--hcCccccceeEEEEeccccccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLR--LSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
-....+.+++|+||+......+ ...-.+.+++++|+||.|.+..+
T Consensus 1015 ~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 2445579999999998876655 22334578999999999998864
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00065 Score=73.27 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhcC--C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 22 ARNYQLEALENALKQ--N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
+.+-|.+++..++.. + ++|.++.|+|||.+...+...+.. .+.++++++||. ..+..+++..+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-----~g~~v~~~apT~----~Aa~~L~~~~~~ 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-----AGKRVIGLAPTN----KAAKELREKTGI 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-----TT--EEEEESSH----HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-----CCCeEEEECCcH----HHHHHHHHhhCc
Confidence 567899999999864 3 678899999999976554443322 357899999995 444555554443
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00069 Score=72.42 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...|..+++.+++.+ +++.+|.|||||+.|+....++. ....-+++++.-|.++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v---~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELV---KEGEYDKIIITRPPVEA 61 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH---HTTS-SEEEEEE-S--T
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHH---HhCCCcEEEEEecCCCC
Confidence 568999999999764 88999999999999988655443 23556778888888754
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=67.63 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec--ccccccC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS--ILEEGLD 463 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs--vleeGiD 463 (1396)
...+++||+++....+.+...++..... .++. .+..+ .....++++.|++++-.||+|+. .+.||||
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-~~~~-v~~q~---------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD 76 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-KGIP-VFVQG---------SKSRDELLEEFKRGEGAILLAVAGGSFSEGID 76 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E--ETSC-EEEST---------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS-
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-ccce-eeecC---------cchHHHHHHHHHhccCeEEEEEecccEEEeec
Confidence 4579999999999999999888853110 1221 22222 24678999999999999999998 9999999
Q ss_pred CCc--ccEEEEeCCCC
Q 000607 464 VQS--CNLVIMFDPSR 477 (1396)
Q Consensus 464 Ip~--~~lVI~fD~p~ 477 (1396)
+|+ |..||...+|.
T Consensus 77 ~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 77 FPGDLLRAVIIVGLPF 92 (167)
T ss_dssp -ECESEEEEEEES---
T ss_pred CCCchhheeeecCCCC
Confidence 997 88999877763
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0022 Score=69.09 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=85.5
Q ss_pred CcccchHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 18 TLPFARNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
..+..|+-|.++....++ .|.+..+-+|.|||-+.+=++..+ + ..+.+.+.++||. +|..|..+.++..++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~---L-Adg~~LvrviVpk-~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA---L-ADGSRLVRVIVPK-ALLEQMRQMLRSRLG 94 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH---H-cCCCcEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 356689999999999887 389999999999998864333221 2 2345678888998 999999998887542
Q ss_pred ----CeEEE--EeCCCCcccCCccchH----HhhccCcEEEecHHHHHHhHhhc-------C-----------cccccee
Q 000607 94 ----LKVGK--YWGDMGVDFWDGATWK----EEMSKHEVLVMTPQILLDGLRLS-------Y-----------FKLNMIK 145 (1396)
Q Consensus 94 ----~~v~~--~~G~~~~~~~~~~~~~----~~~~~~~ViV~T~q~L~~~l~~~-------~-----------~~l~~i~ 145 (1396)
-++.. +.-+...+.-...... .......|+++||+.++...-.+ . -.+++-.
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~ 174 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHS 174 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 23322 2222222211111122 22246789999999887532211 1 0123345
Q ss_pred EEEEeccccccC
Q 000607 146 VLILDECHHARG 157 (1396)
Q Consensus 146 llI~DEaH~~~~ 157 (1396)
-=|+||||....
T Consensus 175 rdilDEsDe~L~ 186 (229)
T PF12340_consen 175 RDILDESDEILS 186 (229)
T ss_pred CeEeECchhccC
Confidence 568899997764
|
There are two conserved sequence motifs: LLE and NMG. |
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=61.30 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=65.9
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
=-|.|+||||+++.|-.|+...+.. .|..||..-.+.||.+.-|.+-..+ ..++. ..-.+.+++-.+...
T Consensus 16 laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lt-------e~E~~I~KRgRNaks 85 (132)
T COG1939 16 LALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLT-------EEEEEIVKRGRNAKS 85 (132)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhh-------HHHHHHHHHhccccc
Confidence 3589999999999999999876443 7999999999999999888775432 11211 111111111111111
Q ss_pred CCCCCcccccCCC-hhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1267 GSTFGWESVTSFP-KALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1267 ~~~~~~~~~~~~~-k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+ ..+-. .+++ =-.|.-|||+||.+|+-... ++..+++..
T Consensus 86 ~-T~~kn--~dv~tYr~sTgfEAliGyLyL~~~~--eRL~ell~~ 125 (132)
T COG1939 86 G-TKPKN--TDVETYRMSTGFEALIGYLYLTKQE--ERLEELLNK 125 (132)
T ss_pred C-CCCCC--CChHHHHHhhhHHHHHHHHHHcccH--HHHHHHHHH
Confidence 0 00000 0111 14788899999999997755 344444443
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0016 Score=85.84 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=62.8
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCC---------CCcccHHHHHHHHhCceeccC-CCceEeeeccccc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNN---------GSVTTYKKHYEERYGIQLCFD-REPLLNGRRIFHV 901 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~---------~~~~ty~~y~~~k~~~~i~~~-~QPll~~~~~~~~ 901 (1396)
..+++..|.+.|+++.|.|.++.++.++...|+..+ +...|+.+||+++|+++|.++ ++|+|.+.+
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~---- 368 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK---- 368 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC----
Confidence 346778899999999999999999999988886432 235799999999999999986 889885431
Q ss_pred ccccchhhhcccCCCCcceeeeccccccc
Q 000607 902 QNYLSKCRQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 902 ~n~l~~~~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++||||+|.+
T Consensus 369 ---------------~~~~~ylP~ElC~i 382 (900)
T PLN03202 369 ---------------PKRPTYFPIELCSL 382 (900)
T ss_pred ---------------CCCCeEEcceeeEc
Confidence 01125799999975
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0045 Score=77.63 Aligned_cols=119 Identities=20% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 24 NYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
+.|++++..++.++ ++|.++.|+|||.+...++..+.......++.++.+.+||---+....+.+..... .+.-.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~----~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK----NLAAA 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc----ccccc
Confidence 79999999999985 88999999999998777766554432221235799999995554444444443211 00000
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhh--c----CccccceeEEEEeccccccC
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--S----YFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--~----~~~l~~i~llI~DEaH~~~~ 157 (1396)
........+-.+|-..|+..... . .-+...+++||+|||-.+..
T Consensus 224 -----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~ 273 (586)
T TIGR01447 224 -----------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL 273 (586)
T ss_pred -----------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH
Confidence 00011112234555555533211 0 11234679999999998754
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0053 Score=71.28 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHH
Q 000607 23 RNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 23 r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+|-|.+-...+++ |++++-||+|+|||..-+.+|-.+ +...+ ...+.++..-|++=++....++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aY--q~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAY--QLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHH--HHhCCcccceEEEecCcchHHHHHHHHH
Confidence 4556554444443 589999999999999877666543 22223 4555666666665554444433
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0018 Score=76.39 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=64.1
Q ss_pred EeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC----CeEEEEeCCCCcccCCccchHHh
Q 000607 41 FLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD----LKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 41 ~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~----~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.|.||||||++.+.+|.++.. + +-+..+|.|+....++-...-+..-.. +.-.+..|+.+........+...
T Consensus 3 ~matgsgkt~~ma~lil~~y~---k-gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK---K-GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH---h-chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 589999999999888877654 2 344577777765554433222211000 11112233323222222223333
Q ss_pred hccCcEEEecHHHHHHhHhhcC---cc---cccee-EEEEecccccc
Q 000607 117 MSKHEVLVMTPQILLDGLRLSY---FK---LNMIK-VLILDECHHAR 156 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~---~~---l~~i~-llI~DEaH~~~ 156 (1396)
-+...|+++|.|.|...+.+.. +. +.+.. +.+-|||||+-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3467899999999998776542 22 33333 55679999986
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0087 Score=67.44 Aligned_cols=121 Identities=22% Similarity=0.222 Sum_probs=73.9
Q ss_pred cccchH-HHHHHHHHHhcCC---EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 19 LPFARN-YQLEALENALKQN---TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 19 ~~~~r~-yQ~e~~~~~l~~n---~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
.+.||. +|.-+++..+..+ +.+.+.-|||||+.|+.+.. .+-+....-+++++-=|++++ |-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl--eqv~e~~~y~KiiVtRp~vpv------------G~ 290 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL--EQVLERKRYRKIIVTRPTVPV------------GE 290 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH--HHHHHHhhhceEEEecCCcCc------------cc
Confidence 445665 7888888888864 66999999999999886322 222333445668888898877 33
Q ss_pred eEEEEeCCCC--cccCCccchHHhhccCcEEE----ecHHHHHHhHhhcCccccce----------eEEEEeccccccC
Q 000607 95 KVGKYWGDMG--VDFWDGATWKEEMSKHEVLV----MTPQILLDGLRLSYFKLNMI----------KVLILDECHHARG 157 (1396)
Q Consensus 95 ~v~~~~G~~~--~~~~~~~~~~~~~~~~~ViV----~T~q~L~~~l~~~~~~l~~i----------~llI~DEaH~~~~ 157 (1396)
.++.+-|... ...|-+... ++-.+++ |+.+.+...+.++.+.+..+ .+||+|||+++..
T Consensus 291 dIGfLPG~eEeKm~PWmq~i~----DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp 365 (436)
T COG1875 291 DIGFLPGTEEEKMGPWMQAIF----DNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP 365 (436)
T ss_pred ccCcCCCchhhhccchHHHHH----hHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH
Confidence 4455555421 223332222 1222222 34566766666654433222 6899999999875
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0038 Score=62.60 Aligned_cols=56 Identities=23% Similarity=0.114 Sum_probs=32.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
-++|.+++|+|||.++-.+++.+..... ......+.+-+|...-.......+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 62 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL 62 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4889999999999998777776543211 1133445555555443344455554443
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.007 Score=67.84 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=25.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
|+++++|+|+|||..|..+..++.. .+.+++|.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~ 132 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFA 132 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhh
Confidence 8999999999999999887766543 34556664
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0099 Score=73.49 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=41.5
Q ss_pred CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccC
Q 000607 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R 491 (1396)
..+.|++-+++-||.|=|++=.++-.....|..+=.|-+||.-|
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 48899999999999999999999999999999999999999877
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=71.45 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=33.3
Q ss_pred cccCCCcccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHH
Q 000607 13 EVSADTLPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIM 54 (1396)
Q Consensus 13 ~~~~~~~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iail 54 (1396)
+.+-...++|++-|...+.+++. .|+++-.|||+|||+.-+-
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 33444456699999999998886 3899999999999997544
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.037 Score=65.64 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=66.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.++.-+..++...... .++++.++. .+ +.-+..|...+.+..++.+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-----------------
Confidence 47799999999999987776654322111 234444443 33 33344444444444444332
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
++.++..+...+.. +.+.++||+|++.+...+...-.-+..+... .....-.+|.|+||-.
T Consensus 238 --------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~----~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 238 --------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNA----CGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHh----cCCCCeEEEEEcCCCC
Confidence 12234444444432 3578999999999886542121223444422 1122236789999874
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0099 Score=74.71 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
-++|++++..++.++ ++|.+++|+|||.+...++..+.+.. .....++.+++||---+....+.+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~-~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA-DGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEECCcHHHHHHHHHHH
Confidence 479999999999875 88999999999998776666554321 223457889999954444444443
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.43 Score=56.40 Aligned_cols=129 Identities=11% Similarity=0.180 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHh-hhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 369 TEKIVCLIESLL-EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 369 s~Kv~~L~~~L~-~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
..+.+-..+.+. ++.......|+|+.++-..--.+...+++. .+....++--+ ++.+-..+-+-|-.|
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e-----~i~F~~i~EYs------sk~~vsRAR~lF~qg 601 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE-----EISFVMINEYS------SKSKVSRARELFFQG 601 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh-----hcchHHHhhhh------hHhhhhHHHHHHHhc
Confidence 344444444332 343334567899999988877788888763 44444443332 445556677779999
Q ss_pred CeeEEEEeccc--ccccCCCcccEEEEeCCCCcHH---HHHHhhhcccCCC------CcEEEEEecCCcchH
Q 000607 448 LVNVIVATSIL--EEGLDVQSCNLVIMFDPSRTVC---SFIQSRGRARMQN------SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 448 ~~nvLVaTsvl--eeGiDIp~~~lVI~fD~p~s~~---~yiQr~GRA~R~g------s~~i~lv~~~~~~~~ 508 (1396)
..++|+-|.-+ =+--+|..+.-||.|.+|.+|. .++-+.||+.-.| ..+.+|++.-|.-..
T Consensus 602 r~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 602 RKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred CceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999999654 4678999999999999999975 4577888876555 478888886654433
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0054 Score=67.44 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...|..++..+.+. .+++.+++|+|||+.|+.+..+... ...-+++++.=|+++.
T Consensus 61 n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~---~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 61 NEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI---HKDVDRIIVTRPVLQA 116 (262)
T ss_pred CHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeeEEEEeCCCCCc
Confidence 56888888877765 5889999999999999886653321 1234556666676543
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.062 Score=60.64 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHH----hcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH
Q 000607 21 FARNYQLEALENA----LKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~----l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q 83 (1396)
.+..-|..++..+ .++ |+++++|+|+|||..+..+..++.+ .+.+++|+. ...|+.+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-----~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-----NGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH-----cCCceeeee-HHHHHHH
Confidence 3445566555433 233 8999999999999999887766543 345565553 3345443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.015 Score=62.40 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=25.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
.++.+|+|+|||..++.++.++.. .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~-----~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE-----RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH-----cCCeEEEEec
Confidence 568999999999988776665532 3667888766
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.032 Score=72.19 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=43.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...+.+-|.+++..+..+ -++|.++.|+|||.+.-.++..+.. ..+...+++++||-.-
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~A 380 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRA 380 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHH
Confidence 355889999999999876 4889999999999987655554322 1122678889999443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.084 Score=68.68 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
..+.+-|.+++..+... -++|.++.|+|||.+.-.++..+ . . .+.++++++|| ...+..++.-++....
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~---~-~g~~V~~~ApT----g~Aa~~L~~~~g~~a~ 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-E---A-AGYRVIGAALS----GKAAEGLQAESGIESR 421 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-H---h-CCCeEEEEeCc----HHHHHHHHhccCCcee
Confidence 44789999999999874 37899999999998865544332 2 1 36779999999 3334445443333211
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
|-..++....++.-.+...++||+|||-.+..
T Consensus 422 ----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 422 ----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 11112111122223356789999999998864
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.086 Score=56.73 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++|||+|||.++.-+..++.. . ++++.+++ . .|.=+..|-+.+.+..++.+....-. .+ +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~---~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~--~~------~-- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL---K--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTE--SD------P-- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---T--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTT--SC------H--
T ss_pred EEEECCCCCchHhHHHHHHHHHhh---c--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcc--hh------h--
Confidence 569999999999998877765532 2 44444444 3 33444556666666666555432211 00 0
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+.+.+.+. ...-++.++|++|-+-+...+.....-|+.+.... .+....|-|+||-..
T Consensus 69 -----------~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-----~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 69 -----------AEIAREALE--KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL-----NPDEVHLVLSATMGQ 127 (196)
T ss_dssp -----------HHHHHHHHH--HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-----SSSEEEEEEEGGGGG
T ss_pred -----------HHHHHHHHH--HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc-----CCccceEEEecccCh
Confidence 112223333 12235689999999887765444444455555432 233457788888643
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.02 Score=66.99 Aligned_cols=122 Identities=16% Similarity=0.054 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
.+=|.+++.. .+++++|.|..|||||.+.+..+.+++.... -+..++++++.|+..+....+.+...++....
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~----- 74 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQ----- 74 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCcccc-----
Confidence 4568889888 8889999999999999998877666544222 35567999999999998888888874321100
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCcccc--ceeEEEEeccc
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN--MIKVLILDECH 153 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~--~i~llI~DEaH 153 (1396)
.... +............+.|+|...+...+-+.+.... .-++-|+|+..
T Consensus 75 ~~~~--~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ESSD--NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCTT---HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc--cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000 0011111222467889998877654332221111 22456666665
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.059 Score=48.49 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=48.6
Q ss_pred chHHHHHHhhccCCCCCCCCCccEEEEe---C----CeEEEEEEcCCCCCC-cc----c---cccCCHHHHHHHHHHHHH
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHIN---K----EMGICTLYLPNNCPI-QT----V---IAQGNIKTLKQAACLEAC 623 (1396)
Q Consensus 559 ~ai~~l~~yc~~lp~d~~~~~~p~~~i~---~----~~~~~~v~LP~~~p~-~~----~---~~~~~~~~Ak~~aAf~a~ 623 (1396)
+|++.|+.+|++--= ..|.|.+. + -.|.|.|.+|...-. .. + .++.+++.||.+||-.|-
T Consensus 2 ~a~~~L~elC~k~~W-----~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L 76 (80)
T PF14709_consen 2 SAVSLLNELCQKNKW-----GPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQAL 76 (80)
T ss_pred CHHHHHHHHHHhcCC-----CCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHH
Confidence 689999999988521 46888881 1 279999999987652 22 1 688999999999998887
Q ss_pred HHH
Q 000607 624 KKL 626 (1396)
Q Consensus 624 ~~L 626 (1396)
..|
T Consensus 77 ~~L 79 (80)
T PF14709_consen 77 QAL 79 (80)
T ss_pred Hhc
Confidence 655
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=58.04 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 26 QLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 26 Q~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
...++..+.. .++++++|+|+|||..+..+..++.. .+.++.|+.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~v~y~~ 80 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ-----RGRAVGYVP 80 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEE
Confidence 4445544433 25899999999999988765554422 244556553
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.054 Score=68.18 Aligned_cols=125 Identities=17% Similarity=0.071 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 21 FARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
.+..-|++|+.+++.- | .+|.+=+|+|||.+...+|+.+.. .+|++|..+=|..-|+..--.++.+ + ...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----~gkkVLLtsyThsAVDNILiKL~~~-~--i~~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----LGKKVLLTSYTHSAVDNILIKLKGF-G--IYI 740 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----cCCeEEEEehhhHHHHHHHHHHhcc-C--cce
Confidence 4788999999999985 5 778888999999998889988754 5788999998876667666666543 1 111
Q ss_pred E-eCCCC--------------cccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 99 Y-WGDMG--------------VDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 99 ~-~G~~~--------------~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
. -|... ....+-+.....++...||.+|.=-+- +..+...++++.|+|||-.+.-
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~----~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN----HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC----chhhhccccCEEEEcccccccc
Confidence 1 11110 001112234466678889999863322 3334456799999999987653
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=57.23 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
++++.+++|+|||..|..+...+.. .+..++|+ +...|..+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~-----~g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLA-----KGRSVIVV-TVPDVMSRL 144 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-----cCCCeEEE-EHHHHHHHH
Confidence 6999999999999999888776643 34445443 433555543
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.18 Score=56.12 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 24 NYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 24 ~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
+-|..++..+.+ +++++.+++|+|||..+..++.++.. .++.++|+
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-----~g~~v~~i 133 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-----RGKSVLII 133 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEE
Confidence 446556655553 25899999999999999888776643 34556665
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.033 Score=53.01 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=69.6
Q ss_pred CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCc
Q 000607 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYE 1074 (1396)
Q Consensus 995 ~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~ 1074 (1396)
|-=-|+|+||||+.+.+=.|+.... ....+.||..-.+.||-+.=+.+-.. +..++.. .+ ..|.-.|.+.+...
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g-~~k~~~lH~~a~~~VsAk~QA~il~~--~~~~Lte-~E--~~I~KRgRNaks~T 87 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKG-KTKPNDLHKRATAYVSAKAQALILKA--LLEFLTE-EE--EEIVKRGRNAKSGT 87 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcc-cCChHHHHHHHHHHhhHHHHHHHHHH--HHHHhhH-HH--HHHHHHhcccccCC
Confidence 5557999999999999988777653 33688999999999987765555332 1112220 00 12333343221110
Q ss_pred cCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1075 LNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
. +...-+..=..|..+|||||..|+.+-.+.-..++.|.
T Consensus 88 ~-------------~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 88 K-------------PKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred C-------------CCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0 00001222345788999999999999887777776664
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.074 Score=59.75 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=35.3
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.|+++.+++|+|||+.|+++...+.. .+.+++ .+++..|+.+....+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~-----~g~sv~-f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLK-----AGISVL-FITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEE-EEEHHHHHHHHHHHHh
Confidence 38999999999999999988877652 244444 4566678777666555
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.041 Score=65.99 Aligned_cols=68 Identities=25% Similarity=0.160 Sum_probs=51.0
Q ss_pred cCCchhHHHHHHHhcCCCCCcceeeccCCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhC
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1322 ~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1393 (1396)
..+|+..|+|+.+ +..+.........+...|.|.|.|+|+.+- |.|.|||+||..||..||+.|-...
T Consensus 89 ~~npv~ll~e~~~--~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~--~~~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFDFVNESGPQHAPKFVMSVVVDGRWFE--GGGRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc--ccceeeeccCCCCCCceEEEEEEECCEEcc--CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 6899999999988 322222222222334569999999999864 4499999999999999999987543
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=63.15 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHhc----C----CEE-EEeCCCchHHHHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK----Q----NTI-VFLETGSGKTLIAIMLLRSYAYL 62 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~----~----n~I-v~~~TGsGKT~iailli~~l~~~ 62 (1396)
-|+-|.+.+..++. + ++| |+++||+|||.++-.+++.+.+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 48888877765553 2 454 99999999999998888776543
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.027 Score=56.68 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVV 79 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~ 79 (1396)
+++++.+|+|+|||.++..++..+ .. ..+.++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~----~~-~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL----GP-PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc----CC-CCCCEEEECCEEc
Confidence 358899999999999987666544 11 1124666666643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.2 Score=66.22 Aligned_cols=101 Identities=18% Similarity=0.085 Sum_probs=63.1
Q ss_pred ccchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+.+.+=|.+++..++.+ + ++|.++.|+|||.+. ..+..+.+ ..+.+++.++||- ..+..+..-+|+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e----~~G~~V~~~ApTG----kAA~~L~e~tGi~a- 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWE----AAGYEVRGAALSG----IAAENLEGGSGIAS- 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHH----HcCCeEEEecCcH----HHHHHHhhccCcch-
Confidence 45788999999999985 3 789999999999873 33333322 1366799999993 33444443222211
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.|-..|+.....+...+..-++||+|||-.+..
T Consensus 415 ---------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 415 ---------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred ---------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH
Confidence 122222211112233355678999999998764
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=56.67 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=23.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
+++++++|+|||..+..+.....+ .+.+++++.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~-----~~~~~~y~~ 76 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ-----AGRSSAYLP 76 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEe
Confidence 889999999999988766554422 244566653
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.14 Score=59.52 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 21 FARNYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
.||..+..+++.+.+ .+++++++||+|||+.+..++.++.. .+..|+|+. ...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~-----~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD-----RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-----CCCeEEEEE-HHHHHHHH
Confidence 688888888886552 47999999999999999888777643 345566654 34565544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.11 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+++.+|+|+|||.++-.++..+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999998876666544
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.061 Score=60.18 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=53.4
Q ss_pred HHHHHHhcCCeeEEEEecccccccCCCc--------ccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEe
Q 000607 439 EIVEEFRRGLVNVIVATSILEEGLDVQS--------CNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVK 501 (1396)
Q Consensus 439 ~~l~~Fr~g~~nvLVaTsvleeGiDIp~--------~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~ 501 (1396)
...+.|.+|+..|+|-|..++.||.+.+ -.+-|...+||+....+|..||+.|.|+ .|.++++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 5667899999999999999999999875 2356788999999999999999999985 3665554
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.2 Score=65.37 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=53.1
Q ss_pred cccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 19 LPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
...+||.|.+..+.+.+ +++++-+|||+|||+..+....... ...+...+++|++.|..=..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~--~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQ--QEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHH--HhccccccEEEEcccchHHHHHHHHHHh
Confidence 33359999999988775 3799999999999998776433222 1123346799999998888888888887
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.096 Score=58.12 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
+++++|+|+|||..+..+..++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999877766553
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.089 Score=45.57 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=43.2
Q ss_pred chHHHHHHhhccCCCCCCCCCccEEEE---eC----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 559 ~ai~~l~~yc~~lp~d~~~~~~p~~~i---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
+.++.|+.||++. ....|.|.+ .+ ..|+|+|.+... ....-...||+.||+.||..|+..|
T Consensus 1 ~p~~~L~e~~~~~-----~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~--~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKR-----GKPLPEYELVEEEGPDHAPRFTVEVTVGGK--ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHc-----CCCCCeEEEeeeeCCCCCCeEEEEEEECCE--EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 3578999999875 124567766 22 479999999651 1111334599999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.09 Score=53.22 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhcCC-eeEEEEecccccccCCCc--ccEEEEeCCC
Q 000607 433 SRKKQNEIVEEFRRGL-VNVIVATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 433 s~~~r~~~l~~Fr~g~-~nvLVaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
+..+..+++++|++.. ..||++|.-..||||+|+ |..||...+|
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3345688999998754 379999977999999998 6778765554
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.53 Score=54.93 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=62.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC--cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK--VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
+++++++|+|||.++..++..+.. .+.+++++. .+ ..-+.|+.. .....++.+.. +..+.+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-----~g~~V~li~~Dt~R~~a~eqL~~-~a~~lgv~v~~--~~~g~dp------- 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-----NGFSVVIAAGDTFRAGAIEQLEE-HAERLGVKVIK--HKYGADP------- 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEecCCcCcHHHHHHHHH-HHHHcCCceec--ccCCCCH-------
Confidence 669999999999987766655422 344555554 32 233345433 34445554432 1111110
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
..++.+.+... ...+.++||+|.+++...+...-.-|+.+... ..+.-.+|.++|+..
T Consensus 208 ------------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~-----~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 ------------AAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRV-----TKPDLVIFVGDALAG 265 (336)
T ss_pred ------------HHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHh-----hCCceEEEeeccccc
Confidence 11122333321 12457899999999987553333333444321 122345777888764
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.43 Score=56.24 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=63.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.++..++..+.. ..+.+++.++. .+ +.=+.+|...+.+..++.+..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~---~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--------------- 200 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVM---RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--------------- 200 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec---------------
Confidence 4789999999999998877765432 11223444444 22 1223444555555545444322
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+++.+...+. .+.+.++|++|++=....+......+..+. ......-.+|.|+||-..
T Consensus 201 ----------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~-----~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 201 ----------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLH-----GADTPVQRLLLLNATSHG 259 (374)
T ss_pred ----------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHh-----ccCCCCeEEEEecCccCh
Confidence 22222222222 235679999999965543333333333322 111223468888998744
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=43.97 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=41.3
Q ss_pred hHHHHHHhhccCCCCCCCCCccEEEE---eC-----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 560 SVSLIYFYCSRLPSDGYFKPTPKFHI---NK-----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 560 ai~~l~~yc~~lp~d~~~~~~p~~~i---~~-----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
+++.|+.||++.- ..|.|.. .+ ..|.|+|.+.... +. .-...|||.||+.||..|++.|
T Consensus 1 ~~~~L~e~~~~~~------~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~-~~-~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNK------FPPPYYYIEEEGPSHHRPRFICTVYIDGKE-YG-EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCT------SSEEEEEEEEESSSSSSEEEEEEEEETTEE-EE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC------CCCCEEEEEEeCCCCCCceEEEEEEECCEE-Ee-EeccCCHHHHHHHHHHHHHHhC
Confidence 3688999999974 3444443 11 2799999994321 10 1334599999999999999987
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.3 Score=55.69 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHh---c-C--CEEEEeCCCchHHHHHHHHHH
Q 000607 21 FARNYQLEALENAL---K-Q--NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l---~-~--n~Iv~~~TGsGKT~iailli~ 57 (1396)
.+.+-+.+++.... + + .+++.+++|+|||..+-.+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45555566665543 2 2 488999999999988655443
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.47 Score=56.89 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHhc--------CCEEEEeCCCchHHHHHHHHHHHHHH
Q 000607 21 FARNYQLEALENALK--------QNTIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~--------~n~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
.-|+-|.+.+...++ ++++|++|+|+|||.++-.++..+.+
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 359999887776653 36999999999999988777766543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.034 Score=63.91 Aligned_cols=64 Identities=27% Similarity=0.191 Sum_probs=50.2
Q ss_pred hhHHHHHHHhcCCCCCcceeecc-CCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1326 VRELTEYCQKNHFSMKKPVASRI-SGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1326 ~~~L~~~~~~~~~~~~~~~~~~~-~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
+-.|+|++|..-...+.|+.... +....|..+|.+++..+| .|.|.|||.||-.||+.+|++|-
T Consensus 378 vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yG-sG~g~sKK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 378 VCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYG-SGVGASKKTAKLVAARDTLEILI 442 (650)
T ss_pred eehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccc-cccccchHHHHHHHHHHHHHHhc
Confidence 45789998875545555543322 233459999999999998 89999999999999999999874
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.43 Score=57.84 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.+++.++..+.. . ..++++.++. .+ +.-+..|...+....++.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~--~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYAL--L-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--h-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 4779999999999998877665531 1 1234455444 22 1111112222222223222
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..+.++..+...+.. +.+.++||+|.+-+...+.....-+..+... ........|.|+||...
T Consensus 282 -------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~----~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEF----SGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc----cCCCCeEEEEEECCCCH
Confidence 122344444444442 3468999999997765554444445555531 11234567889998743
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.33 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=20.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
++++.+|+|+|||.+|-.+.+.+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999987766553
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.68 Score=61.78 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
..+.+=|.++++.+...+ ++|.++-|+|||.+.-.+...+ + ..+.+++-++|| ...+..+++.+|+...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~-e----~~G~~V~g~ApT----gkAA~~L~e~~Gi~a~ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW-E----AAGYRVVGGALA----GKAAEGLEKEAGIQSR 450 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH-H----HcCCeEEEEcCc----HHHHHHHHHhhCCCee
Confidence 457889999999886543 7899999999998754433322 2 246779999999 4556666665555433
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+ | +-....+...+..-++||+|||..+..
T Consensus 451 TIas-----------~-----------------ll~~~~~~~~l~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 451 TLSS-----------W-----------------ELRWNQGRDQLDNKTVFVLDEAGMVAS 482 (1102)
T ss_pred eHHH-----------H-----------------HhhhccCccCCCCCcEEEEECcccCCH
Confidence 2221 1 100111122345678999999998764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.15 Score=50.75 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.3
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~ 58 (1396)
+++.+|.|+|||..+-.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999987666554
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.71 Score=54.21 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-c-ccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-V-VLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~-~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+.+++|||+|||..+..+...+.. .++++.++. .+ + +-+.|+..... ..+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~RiaAvEQLk~yae-~lg-------------------- 296 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIG-------------------- 296 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcchHHHHHHHHHhh-hcC--------------------
Confidence 4679999999999988877665432 234444443 33 2 23444443222 122
Q ss_pred HHhhccCcEE-EecHHHHHHhHhhcCccccceeEEEEeccccccCCC
Q 000607 114 KEEMSKHEVL-VMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH 159 (1396)
Q Consensus 114 ~~~~~~~~Vi-V~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~ 159 (1396)
..++ +.++..+.+.+.... .-.+.++||+|-+=+...+.
T Consensus 297 ------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~ 336 (436)
T PRK11889 297 ------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRAS 336 (436)
T ss_pred ------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCH
Confidence 2232 346666666554211 11258999999987765543
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.17 Score=51.38 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCe---eEEEEecc--cccccCCCc--ccEEEEeCCC
Q 000607 436 KQNEIVEEFRRGLV---NVIVATSI--LEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 436 ~r~~~l~~Fr~g~~---nvLVaTsv--leeGiDIp~--~~lVI~fD~p 476 (1396)
+..+++++|++..- .||+++.- ..||||+|+ |..||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 34688999987543 58888876 899999998 7888876665
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.27 Score=54.65 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=22.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
++++++++|+|||..+..+..++.. .+.+++++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~-----~~~~v~y~~ 80 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQ-----RGEPAVYLP 80 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEee
Confidence 4789999999999986654443321 234566544
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.21 Score=43.09 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHHHHhhccCCCCCCCCCccEEEE---eC----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 561 VSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 561 i~~l~~yc~~lp~d~~~~~~p~~~i---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
++.|+.+|++.- ..|.|.+ .+ ..|.|++.+... .-..-...||+.||+.||-+|+..|
T Consensus 2 ~~~L~e~~~~~~------~~~~y~~~~~~g~~~~~~f~~~v~i~~~--~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 2 KSLLQELAQKRG------LPPEYELVKEEGPDHAPRFTVTVKVGGE--YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred chHHHHHHHHCC------CCCEEEEEeeeCCCCCCcEEEEEEECCE--EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 578999998762 2577876 11 379999999542 1111446899999999999999887
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.32 Score=56.21 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
+.|+++|+|+|||.+|-++..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH
Confidence 699999999999999876554
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.13 Score=57.24 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHHHHHHHhc---C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALK---Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~---~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|...+...++ + +.+.++|.|+|||-+|.++.+++
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 67776655543 2 69999999999999998887766
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.65 Score=55.04 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHhc----C----CEEEEeCCCchHHHHHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALK----Q----NTIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~----n~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
..-|+-|.+-+..++. + |++|.++||+|||.++-.+++++.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3358888887776654 2 7999999999999998888877644
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.4 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++++.+++|+|||..|..+.+..
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999987766544
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.82 Score=55.44 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHh----c----CCEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENAL----K----QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l----~----~n~Iv~~~TGsGKT~iailli~~l 59 (1396)
-|+-|.+.+...+ + .+++|++++|+|||.++-.++..+
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4888877666554 2 269999999999999877776655
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.45 Score=58.67 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+++++|+|+|||..+-.+..++.+ ..++.+++++.. ..+..+..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~-~~~~~~~~ 194 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTS-EKFTNDFV 194 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEH-HHHHHHHH
Confidence 889999999999998776665533 223555666543 34544433
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.32 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++|+++|+|+|||..|-.+..++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCccchhHHHHHHHhcc
Confidence 49999999999999887655543
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.16 Score=65.70 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
+.+-|.+++.. ..+.++|.++.|||||.+.+..+.++.+.. .-+..++++|+-|+.-+....+.+.+.+
T Consensus 3 Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 67889999875 467899999999999999888777765421 2245679999999999888888887754
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.67 Score=54.17 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhcCC-----EEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQN-----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n-----~Iv~~~TGsGKT~iailli~~l 59 (1396)
..|||...++.+..++ .++.+|.|.|||..|..+.+.+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 4789999999888753 7799999999999988777665
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.28 Score=56.78 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+.|.+.+..+.+. |+||+++||||||...-.++..+. ..++..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~---~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV---ASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCCceEEEecCCccc
Confidence 356788888888764 899999999999987655554332 22456678888888777
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.62 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999999988777654
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.19 Score=53.20 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=28.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
|+++.+++|+|||..|..++.++.. .+..++|+. ...|+.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~~-~~~L~~ 88 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFIT-ASDLLD 88 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEEE-HHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEee-cCceec
Confidence 7999999999999999998887654 355566653 334543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.67 Score=56.76 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=29.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+++++++|+|||..+..+..++.. ..++.+++++... .+.......+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~---~~~~~~v~yv~~~-~f~~~~~~~l 190 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIES---NFSDLKVSYMSGD-EFARKAVDIL 190 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHH-HHHHHHHHHH
Confidence 789999999999887655443322 2345667765553 5544444444
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.14 Score=62.75 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHhc--------C---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK--------Q---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~--------~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-.-|.|++-.|-+ | ..+|-+.-|.||-.+...+|.+ ..+ .+.|++|.+.=+..|-..-.+.++.
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfe--NyL--kGRKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFE--NYL--KGRKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEeh--hhh--cccceeEEEEeccccccchhhchhh
Confidence 46789998876653 2 4888888888885443333432 112 2456677777666887777777776
Q ss_pred hc--CCeEE--------EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--c-----C-----ccccce-eEE
Q 000607 91 HT--DLKVG--------KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--S-----Y-----FKLNMI-KVL 147 (1396)
Q Consensus 91 ~~--~~~v~--------~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--~-----~-----~~l~~i-~ll 147 (1396)
.. ++.|. .+.|+.+... .--|+++||..|.---.. + + +.-.++ .+|
T Consensus 341 igA~~I~V~alnK~KYakIss~en~n~-----------krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 341 IGATGIAVHALNKFKYAKISSKENTNT-----------KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred cCCCCccceehhhcccccccccccCCc-----------cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 43 33333 2333322211 356999999888732221 1 1 111222 699
Q ss_pred EEeccccccCCCc--------HHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 148 ILDECHHARGKHQ--------YACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 148 I~DEaH~~~~~~~--------~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
||||||++++-.| ..+..-++- ..-+..|++--|||-.
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQ------k~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQ------KKLPNARVVYASATGA 455 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHH------HhCCCceEEEeeccCC
Confidence 9999999987211 111111221 1224467888888843
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.2 Score=54.44 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=59.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+.++++||+|||.++..++..+.. ...++++.++. .+ +.-...|........++.+..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~---~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~---------------- 412 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAA---QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE---------------- 412 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---hcCCCceEEEecccccccHHHHHHHhhcccCceeEe----------------
Confidence 4669999999999998776665432 12233444443 22 322222222222222222211
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
+.+...+...+. .+.+.++||+|.+=....+......+..+.. ....-.+|.+++++.
T Consensus 413 ---------a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a------a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 ---------ADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWLRA------ARQVTSLLVLPANAH 470 (559)
T ss_pred ---------cCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHHHH------hhcCCcEEEEECCCC
Confidence 123344444444 2346899999999766443332222222221 112345778888763
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=1 Score=54.44 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=31.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~ 95 (1396)
+++++++|+|||.++..+..++.. .++++.++. .+ ++-+.+|...+....++.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~-----~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKK-----KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 679999999999999887765532 234455544 33 233333444444444444
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.81 Score=47.31 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++|.+++|+|||..+..++..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcch
Confidence 579999999999998777665432 35567777665444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=91.65 E-value=2.2 Score=50.21 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
.+.+++|||.|||.+-+-+...+. ......+..+|-..| |.=+..|.....+..++.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 477999999999988666555443 122334444444444 1112222333333223222
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.+|-+|+-|...+. .+.+.++|.+|=+=+-..+..+-.-|+.|... ....-.-|.||||-
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~-----~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDV-----SHSIEVYLVLSATT 323 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhc-----cccceEEEEEecCc
Confidence 34556776766554 35677999999887776665555557777632 23344567888886
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.83 Score=55.87 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=26.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
.+++++|+|+|||..+..+..++.+ ..++.+++++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEH
Confidence 3889999999999998766655433 224556777654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.52 Score=60.79 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5899999999999987777655
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.77 Score=55.84 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
+++++++|+|||..+..+..++.+ ..++.+++++.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEE
Confidence 689999999999998776665533 23355666664
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.34 Score=57.80 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHh------cC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 22 ARNYQLEALENAL------KQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l------~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
+.+=|+++++.++ ++ ++.|.++-|+|||++.- .+....+. .++.+++++|| ..+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~----~i~~~~~~-~~~~~~~~a~t-g~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK----AIIDYLRS-RGKKVLVTAPT-GIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH----HHHHHhcc-ccceEEEecch-HHHH
Confidence 4466888888873 33 68899999999999743 33333333 46779999999 4433
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.5 Score=48.18 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=48.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
+.+++|+|+|||.....+..++.+ ..++.+++++... .......+.++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~---~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK---QHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---HCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh---ccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 679999999999975444443322 2245566665543 333333333322
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
.....+.+. +...++||+|..|.+.+.......+-..+
T Consensus 86 -------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~ 123 (219)
T PF00308_consen 86 -------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLF 123 (219)
T ss_dssp -------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHH
T ss_pred -------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHH
Confidence 011222222 34789999999999987643444433333
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.1 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.+|..+.+.+
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999998877765
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.44 Score=55.35 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
.+.|.+.+..+.+. |++|+++||||||...-.++..+. ..++..+++.+-.+.+|
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~---~~~~~~rivtIEd~~El 190 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMV---IQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh---hcCCCceEEEEcCCCcc
Confidence 35678888877663 899999999999977655554432 12455678888888777
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.4 Score=53.98 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=52.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH--HHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ--QAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q--~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
..|+++|.|+|||.+|-.+.+.+.- ..+ |+..-|.+ .+..+.......+..+.+..+.. .+..+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC----~~~-------~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~---vddIR 102 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNC----SNG-------PTSDPCGTCHNCISIKNSNHPDVIEIDAASNTS---VDDIK 102 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcC----cCC-------CCCCCccccHHHHHHhccCCCCEEEEecccCCC---HHHHH
Confidence 3899999999999998877665421 111 22222222 34445544455666555432111 00111
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
. +.+...... ...+..++|+||+|.+.. +..+.+++
T Consensus 103 ~--------------Iie~~~~~P-~~~~~KVvIIDEah~Ls~-~A~NaLLK 138 (491)
T PRK14964 103 V--------------ILENSCYLP-ISSKFKVYIIDEVHMLSN-SAFNALLK 138 (491)
T ss_pred H--------------HHHHHHhcc-ccCCceEEEEeChHhCCH-HHHHHHHH
Confidence 1 111111111 135789999999998865 34444443
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.2 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.|+.+|.|+||+..|..+++.+.
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999988887663
|
... |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=1 Score=56.31 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=29.0
Q ss_pred C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH
Q 000607 37 N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE 86 (1396)
Q Consensus 37 n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~ 86 (1396)
| ++|++++|+|||+.+..+...+.. ...+.+++++.- ..++.+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~---~~~g~~V~Yita-eef~~el~~ 361 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR---LYPGTRVRYVSS-EEFTNEFIN 361 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeH-HHHHHHHHH
Confidence 5 889999999999987765554422 123556666543 345444433
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.95 Score=51.22 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=35.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc---CC---CCcEEEEEeCCcccHHHHHHHHHHhcCCe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR---KP---SPFVAVFLVPKVVLVPQQAEAIKMHTDLK 95 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~---~~---~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 95 (1396)
|.+++++||-|||.++ +++...-. .. ..+.+.+-+|..+=..-.+..|-..++..
T Consensus 63 ~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 7999999999999874 44433111 01 12456666777777777777776655443
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.82 Score=55.83 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=25.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
+++++|+|+|||..+..+..++.. .+.+++++..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~-----~~~~v~yi~~ 177 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE-----SGGKILYVRS 177 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEeeH
Confidence 889999999999998776665532 2455666653
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.57 Score=54.18 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
++++.+++|+|||+.+..+..++.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999998887765
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.6 Score=49.54 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=34.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe--CCcccHHHHHHHHHHhcCCeEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV--PKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv--Pt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+.+++++|+|||.++..+..++.. .++++++++ +.++-+.+|.+......++.+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~-----~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR-----KGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 569999999999988877665432 244555554 3355555555555555555554
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.2 Score=56.64 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.++..+.+.+
T Consensus 41 yLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777765
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.94 Score=53.63 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=22.2
Q ss_pred ccceeEEEEeccccccCC--CcHHHHHHHHHH
Q 000607 141 LNMIKVLILDECHHARGK--HQYACIMTEFYH 170 (1396)
Q Consensus 141 l~~i~llI~DEaH~~~~~--~~~~~im~~f~~ 170 (1396)
+..+++|||||.--.... .....+|+.+..
T Consensus 258 v~~~DlLI~DEvgylp~~~~~~~v~imK~yMe 289 (449)
T TIGR02688 258 VGRWDVVAFDEVATLKFAKPKELIGILKNYME 289 (449)
T ss_pred hccCCEEEEEcCCCCcCCchHHHHHHHHHHHH
Confidence 468999999999985533 235688988774
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.43 Score=61.33 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=55.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
..+.+-|.+++... .++++|.+..|||||.+.+..+.++.... ...+.++++|+.|+..+....+.+...+
T Consensus 195 ~~L~~~Q~~av~~~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG-EDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC-CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 34789999998644 36789999999999999988777665432 2245679999999999888888887654
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.48 E-value=3.7 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.++.+|.|+|||..|..+++.++
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999988887663
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.1 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
..|+++|.|+|||.+|-.+.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999998777765
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.3 Score=55.50 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCC-----EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQN-----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-----~Iv~~~TGsGKT~iailli~~l 59 (1396)
++=.+.+..+++++ .|+++|.|+|||.+|-.+.+.+
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33345555555532 5999999999999988777655
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.52 Score=54.39 Aligned_cols=53 Identities=32% Similarity=0.312 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 25 YQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 25 yQ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
-|.+.+..+.+ +|++|+++||||||..+-.++..+. ..++..+++.+-.+.+|
T Consensus 120 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~---~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 120 AQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA---KNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh---ccCCCceEEEECCchhh
Confidence 35666777666 3899999999999988655554331 12345678888887776
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.22 Score=55.48 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=48.1
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
.|+++.+|||||||+.|-.+.+.+ +- -+-++.-..| .-.-|.|++ +.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-------nV--PFaiADATtL--------------TEAGYVGED-VE--------- 144 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-------NV--PFAIADATTL--------------TEAGYVGED-VE--------- 144 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-------CC--Ceeeccccch--------------hhccccchh-HH---------
Confidence 389999999999999988777655 11 2333333333 223456652 11
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccc--cceeEEEEeccccccC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKL--NMIKVLILDECHHARG 157 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l--~~i~llI~DEaH~~~~ 157 (1396)
.+++.+++....+. ..-..|.+||.+.+..
T Consensus 145 ------------NillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 145 ------------NILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ------------HHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 24566666554433 3357899999998864
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.3 Score=52.49 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++...+.+..+.+. ++++.+|+|+|||..|..+.+.+
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 466666666666653 48899999999999988777655
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.77 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.+++++|||+|||.++..++.++.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 366999999999999887776553
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.1 Score=53.46 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=69.8
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C--
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D-- 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~-- 93 (1396)
..++++|.+++..+..+ -.++..+=..|||.++..++..++- . .++..+++++|+..-+....+.++... +
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~-~--~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC-F--NKDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH-h--CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 55899999999887544 3578889999999988754432221 1 245689999999766665555555322 1
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+.. .++... -....++.|.+.|... +..+-...+++|+||+|...+
T Consensus 135 ~~~~i~-------~~~~~~-I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 135 LQPGIV-------EWNKGS-IELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred hhccee-------ecCccE-EEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 111110 011100 0001245565555321 112234678999999998754
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.46 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
.+.+-|.+++.. ..++++|.+..|||||.+.+..|.++.+.. .-+..++++|+-|+..+....+.+.+..+
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 378899999865 357899999999999999887777665421 22456799999999998888888887643
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.55 Score=61.50 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
.+.+-|.+++... .++++|.+..|||||.+.+..|.++.+.. .-+..++++|+-|+..+....+.+.+..+
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3788999998743 57899999999999999887776665421 22456799999999999988888887643
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=2.4 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988777765
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.44 Score=57.52 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=38.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
=.||.+..|||||.+|+-.+.+++...|.+ .++.++++.|.+.+..=..
T Consensus 228 ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 228 ILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred eEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 388999999999999998777777666655 4455999999977644333
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.95 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~ 58 (1396)
+..-...++.....+ |+|+.+++|+|||.+|-.+...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 444444555555544 8999999999999998655543
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.1 Score=48.25 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKV 78 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~ 78 (1396)
.++++|+|||||.-.+..+..+.. .+++++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~-----ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY-----SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH-----cCCceEEEEecc
Confidence 468999999999765555544322 466788888863
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.9 Score=48.92 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+++.+++|+|||+.|..+..++.. .+..++++ +...|..+..
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-----~~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-----KGVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEE-EHHHHHHHHH
Confidence 899999999999999887776643 24445554 4445555543
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=2.2 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++++++|+|+|||..|..+.+++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999988777765
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=89.36 E-value=5.5 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=35.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+++++++|+|||.++..++.++.. . .+++++++. . .++-+.+|.+.+....++.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~---~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK---K-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---h-CCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 679999999999999887766531 1 234455444 3 3444555555555555655443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=3.2 Score=50.19 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=34.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe--CCcccHHHHHHHHHHhcCCeEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV--PKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv--Pt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+++++++|+|||.+++.++.++... .+++++++. +.++-+..|...+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~----~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK----KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh----cCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 6699999999999998877765431 244455544 3444444344444444555543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.9 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||.+|..+.+.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4999999999999988777765
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=2 Score=52.88 Aligned_cols=35 Identities=34% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
.-.+.+..++.. + .|+++|+|+|||.+|-.+.+.+
T Consensus 21 ~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 21 HVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455555443 2 6899999999999987776654
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.55 Score=55.00 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 26 QLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 26 Q~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
..+.+..+.+ +|++|+++||||||...-.++..+ ++..+++.+-++.+|.
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc------CCCCCEEEECCCcccc
Confidence 3445555554 489999999999998755444332 3455677788887773
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.1 Score=58.05 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=67.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-ccccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-ILEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-vleeGiDI 464 (1396)
++.+++|.++++.-|...++.++.+.+. .++++..++|+. +.+++.++++...+|+.+|+|+|. .+..++.+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~------~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~ 381 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSL------KGKERREILEAIASGEADIVIGTHALIQDDVEF 381 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCC------CHHHHHHHHHHHhCCCCCEEEchHHHhcccchh
Confidence 5779999999999999998888876433 368999999984 888999999999999999999996 45667778
Q ss_pred CcccEEEE
Q 000607 465 QSCNLVIM 472 (1396)
Q Consensus 465 p~~~lVI~ 472 (1396)
.++.+||.
T Consensus 382 ~~l~lvVI 389 (681)
T PRK10917 382 HNLGLVII 389 (681)
T ss_pred cccceEEE
Confidence 88887773
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.78 Score=53.70 Aligned_cols=49 Identities=29% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 27 LEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 27 ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
.+.+..+.+ +|++|+++||||||...-.++..+ +...+++.+=.+.+|.
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC------CCCCeEEEecCCCccc
Confidence 344555554 399999999999998754444433 3456777777777763
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.5 Score=55.11 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 27 LEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 27 ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+.+..+++. ..|+.+|.|+|||.+|..+.+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4455555543 37799999999999998877765
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.45 E-value=4.6 Score=48.22 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++|+|+|||.++..++.++.. . .++++.++. .+ +..+.+|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~---~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL---H-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---h-cCCeEEEecccchhhhHHHHHHHHHHhcCCCee------------------
Confidence 569999999999998877654321 1 233444433 33 33333333333333332211
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+..+..+.+.+. -.+.++||+|=+-+...+.....-|..+.... ....+...+|.|+||-..
T Consensus 284 -------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~--~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 284 -------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCF--GEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhh--cCCCCCeEEEEEeCCCCH
Confidence 0111222333332 25679999998766544433344445544321 011233468889998644
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.28 Score=51.88 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred hccCcEEEecHHHHHHhHhhcCcc--ccceeEEEEeccccccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFK--LNMIKVLILDECHHARG 157 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~--l~~i~llI~DEaH~~~~ 157 (1396)
...++|||+++..|++-.....+. ...-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 347899999999988654333221 23457999999999865
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.8 Score=52.31 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.-.+.+..++++ + .|+++|.|+|||.+|..+.+.+
T Consensus 22 ~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 22 EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3334455555553 2 7899999999999998777655
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.78 Score=59.79 Aligned_cols=88 Identities=15% Similarity=0.001 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
+.+-|.+++.. ..++++|.+..|||||.+.+..|.++... ...+.+++++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~-~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQN-CGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 56789888864 46799999999999999988777666542 12245679999999888888888777654310
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHh
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDG 133 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~ 133 (1396)
...+|.|.|-..|...
T Consensus 74 ----------------~~~~v~v~TfHs~a~~ 89 (664)
T TIGR01074 74 ----------------EARGLTISTFHTLGLD 89 (664)
T ss_pred ----------------ccCCeEEEeHHHHHHH
Confidence 0246889998877643
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=88.38 E-value=2.8 Score=47.79 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH-hcCCeEEEEeCCCCcccCCccc---
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM-HTDLKVGKYWGDMGVDFWDGAT--- 112 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~~G~~~~~~~~~~~--- 112 (1396)
-+++.+++|+|||..+..++..++. ..+.+++|+.-- .-..+....+.. ..+..+..... ...++.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~----~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~ 103 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLIT----QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDT---VFIYTLEEFDA 103 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH----hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCc---cccccHHHHHH
Confidence 3789999999999988776655432 125567777643 233455554433 23433321111 11122222
Q ss_pred hHHhhcc-CcEEEe------cHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 113 WKEEMSK-HEVLVM------TPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 113 ~~~~~~~-~~ViV~------T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
|...+.. ..+.+. |...+.+.+..- ..-..+++||+|..+.+..
T Consensus 104 ~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 104 AFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 2222221 223221 444454444321 1123689999999888764
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.35 E-value=2.5 Score=53.69 Aligned_cols=32 Identities=38% Similarity=0.402 Sum_probs=23.6
Q ss_pred HHHHHHhcC-C----EEEEeCCCchHHHHHHHHHHHH
Q 000607 28 EALENALKQ-N----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 28 e~~~~~l~~-n----~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.+..++.. + .|+.+|.|+|||.+|-.+.+.+
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344444443 2 5899999999999998877765
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.9 Score=53.68 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhc-----C-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 24 NYQLEALENALK-----Q-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 24 ~yQ~e~~~~~l~-----~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
|+|.-++..+.. + .+++..+=|-|||..+..+....+ ......+..+++.++++.-+....+.++....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l-~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML-FLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH-hcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 578877776662 1 388999999999988776543222 12233567899999998777777777766542
Q ss_pred CeEEE--EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh--hcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 94 LKVGK--YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR--LSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 94 ~~v~~--~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
..-.. ..+. .. +. .....|..-..+.+...+. .+...-.+.+++|+||+|...++..|..+....-
T Consensus 80 ~~~~l~~~~~~-~~-------~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 80 ASPELRKRKKP-KI-------IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred hChhhccchhh-hh-------hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 10000 0000 00 00 0011222211111111111 1122234678999999999987555555444332
Q ss_pred HhhccCCCCCCCeEEEEe
Q 000607 170 HRLLETGDSNLPRIFGMT 187 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLT 187 (1396)
....|.++..|
T Consensus 150 -------~r~~pl~~~IS 160 (477)
T PF03354_consen 150 -------ARPNPLIIIIS 160 (477)
T ss_pred -------cCCCceEEEEe
Confidence 23457766664
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.99 Score=51.45 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
..+-|..-++.+.+.+ +...+|-|+|||+.|+...... +....-++++.-=|-+++ |.+.+.+=
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~a---l~~~~v~rIiLtRPaVEA------------GEklGfLP 193 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDA---LGAGQVRRIILTRPAVEA------------GEKLGFLP 193 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhh---hhhcccceeeecCcchhc------------CcccCcCC
Confidence 3568888888888887 5588899999999998754433 223345566655564433 56666666
Q ss_pred CCCC--cccCCccchHHhhccCcEEEecHHHHHHhHhhcC--------ccccc--eeEEEEeccccccCCCcHHHHHHHH
Q 000607 101 GDMG--VDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--------FKLNM--IKVLILDECHHARGKHQYACIMTEF 168 (1396)
Q Consensus 101 G~~~--~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--------~~l~~--i~llI~DEaH~~~~~~~~~~im~~f 168 (1396)
|+.. ++.+....++.+.+ ++-+.....++..+. ++-.. =.++|+||||+..- .-|+.|
T Consensus 194 Gdl~eKvdPylRPLyDAl~d-----~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQNtT~-----~QmKMf 263 (348)
T COG1702 194 GDLREKVDPYLRPLYDALYD-----ILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQNTTV-----GQMKMF 263 (348)
T ss_pred CchhhhcccccccHHHHHHH-----HhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccccch-----hhhcee
Confidence 6643 34333444444332 122222222223322 22222 26999999998542 236667
Q ss_pred HH
Q 000607 169 YH 170 (1396)
Q Consensus 169 ~~ 170 (1396)
+.
T Consensus 264 LT 265 (348)
T COG1702 264 LT 265 (348)
T ss_pred ee
Confidence 63
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.7 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.+|..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=88.05 E-value=5.4 Score=45.19 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=61.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCc--ccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKV--VLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~--~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+.+++++|+|||..+..+...+.. .++++.++. .+. ..+.||...... .++.+.
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~-----~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~~~---------------- 134 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVI---------------- 134 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecCCCCHHHHHHHHHHhhh-cCceEE----------------
Confidence 3679999999999987766654422 233444444 332 455666544332 222221
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
...++..+.+.+..- -...+.+++|+|-+=+...+...-.-|..+... ..+...+|-|+||-.
T Consensus 135 ---------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~-----~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQ-----VEPDYICLTLSASMK 197 (270)
T ss_pred ---------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhh-----hCCCeEEEEEcCccC
Confidence 113455555444311 112468999999987665443333333344321 112224667888753
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.1 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++.+|.|+|||..|..+++.+
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHHH
Confidence 8899999999999988777765
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=2.9 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.8 Score=60.45 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=68.6
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeE
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v 96 (1396)
+.+.+-|.+++..++.. + .||.++.|+|||.+.-.++. +.+ ..+.+++.++||- ..+..+..-++...
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~-~~~----~~G~~V~~lAPTg----rAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLH-LAS----EQGYEIQIITAGS----LSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHH-HHH----hcCCeEEEEeCCH----HHHHHHHHHhcchh
Confidence 35788999999999875 3 88999999999987544433 222 2467899999994 34445554433221
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.. ...|...+... .-..|.+.|++ ....+..-++||+|||-.+..
T Consensus 499 ~T-----------i~~~l~~l~~~-~~~~tv~~fl~----~~~~l~~~~vlIVDEAsMl~~ 543 (1960)
T TIGR02760 499 ST-----------FITWVKNLFND-DQDHTVQGLLD----KSSPFSNKDIFVVDEANKLSN 543 (1960)
T ss_pred hh-----------HHHHHHhhccc-ccchhHHHhhc----ccCCCCCCCEEEEECCCCCCH
Confidence 11 12233222111 12334444441 223345678999999998864
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.5 Score=52.33 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++.+|.|+|||.+|-.+++.+
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777655
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.5 Score=52.98 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCcc--cHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKVV--LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
+.+++|||+|||.+...+...+.. ..+++++.++. .+-- -++| ...+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~---~~G~kkV~lit~Dt~RigA~eQ-L~~~a~~~gvpv------------------ 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA---REGADQLALLTTDSFRIGALEQ-LRIYGRILGVPV------------------ 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH---HcCCCeEEEecCcccchHHHHH-HHHHHHhCCCCc------------------
Confidence 559999999999887776654421 11233444443 2211 2233 233333222211
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.++.+|+.+.+.+. .+.+.++||+|=+=+...+......+..+. ....+.-.+|.|+||-
T Consensus 246 -------~~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~-----~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 -------HAVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLC-----GVGRPVRRLLLLNAAS 305 (767)
T ss_pred -------cccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHh-----ccCCCCeEEEEECCCC
Confidence 22346777766665 234678999998877655432222222222 1122334578888885
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.88 E-value=2.5 Score=52.82 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
++.-.+.+..++.+ . .|+++|.|+|||..|..+.+.+
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44444555555543 2 7899999999999998777765
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.5 Score=55.44 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc----CCeeEEEEecccccc
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR----GLVNVIVATSILEEG 461 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~----g~~nvLVaTsvleeG 461 (1396)
.+.+++|-+.+......++..|.... . -...+.|.. ..+...+++|+. |+-.||++|+.+-||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l----~-~~~l~qg~~--------~~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI----P-AEIVIQSEK--------NRLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc----C-CCEEEeCCC--------ccHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 55688888888888888888887421 1 234455542 135678999997 478999999999999
Q ss_pred cCC----------CcccEEEEeCCC
Q 000607 462 LDV----------QSCNLVIMFDPS 476 (1396)
Q Consensus 462 iDI----------p~~~lVI~fD~p 476 (1396)
||+ ..|.+||..-+|
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCC
Confidence 999 238999876666
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=87.82 E-value=3.7 Score=54.65 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l 59 (1396)
|+-+.+-+-.++. .|.|+++|+|+|||.++-.+...+
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5555555555543 389999999999999987776655
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.3 Score=44.68 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.++++|++||||..-+-.++.+.. .++++++..|...= -+.++.+....+.+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-----~g~~v~vfkp~iD~------------R~~~~~V~Sr~G~~----------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-----AGMKVLVFKPAIDT------------RYGVGKVSSRIGLS----------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-----cCCeEEEEeccccc------------ccccceeeeccCCc-----------
Confidence 468999999999965444444322 46778888886322 11222233222222
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
..-++|-.+.-+.+.+....-.. .++.+.+|||+-+...
T Consensus 59 -~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~~ 97 (201)
T COG1435 59 -SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDEE 97 (201)
T ss_pred -ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCHH
Confidence 22355556655655554322111 2889999999988764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=87.58 E-value=1.2 Score=47.41 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
++|.+++|+|||..+..++...+. .+.+++++... +-..+..+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999999877665542 35668877654 5556666666554
|
A related protein is found in archaea. |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=87.42 E-value=2.6 Score=46.04 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=33.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR--------KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~--------~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
|+++.+++|+|||..|..+...+..... ...++.++|+ +...|.......+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHHHHHhc
Confidence 7999999999999999988776542110 0123445554 444666665554443
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.2 Score=50.50 Aligned_cols=54 Identities=22% Similarity=0.147 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhc---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALK---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+.|.+.++.++. +.++++++||||||...-.++..+ . ...++++.+-..+++
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i----~-~~~~~iitiEdp~E~ 120 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL----N-TPEKNIITVEDPVEY 120 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh----C-CCCCeEEEECCCcee
Confidence 46678888887775 258899999999998865555543 1 234566666665554
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=2.2 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=17.7
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||.+|-.+..
T Consensus 167 gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred ceEEECCCCCChHHHHHHHHH
Confidence 599999999999998765544
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=7.3 Score=45.90 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCc-c-cHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKV-V-LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~-~-Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+++++|+|+|||.++..+...+.. .++++.++. .+- . -+.||....+. .++.+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~-----~g~~V~lItaDtyR~gAveQLk~yae~-lgvpv----------------- 264 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLK-----QNRTVGFITTDTFRSGAVEQFQGYADK-LDVEL----------------- 264 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCccCccHHHHHHHHhhc-CCCCE-----------------
Confidence 3679999999999988776654422 234454444 332 1 23454433332 22211
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
.++.+|+-+.+.+.... ..++.++||+|=+=+...+
T Consensus 265 --------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 265 --------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred --------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccC
Confidence 12245666665554211 1246799999987665433
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.5 Score=49.01 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=26.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
++|++++|+|||..+.-++...+.. .+..++|+..-
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E 51 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLE 51 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCC
Confidence 7799999999999888766655431 25567887743
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.94 E-value=2 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+++.+|+|.|||..|-.+..++
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHh
Confidence 9999999999999887655544
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.4 Score=45.58 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=23.2
Q ss_pred ceeEEEEeccccccCCCcHH-----HHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 143 MIKVLILDECHHARGKHQYA-----CIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 143 ~i~llI~DEaH~~~~~~~~~-----~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
.-++||+||||...+..... .++ .++.. -....--++++|=.|.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQ----HRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGG----CCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHH----hCcCCcEEEEEeCCHH
Confidence 55899999999988654442 233 33311 1223346888887773
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.91 E-value=4.1 Score=47.81 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhc--C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALK--Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~--~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|||....+.... + -.++.+|.|.|||..|..+.+.+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5777777776654 2 37799999999999988777655
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=3.2 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777655
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.28 E-value=4.9 Score=46.66 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhc----CC----EEEEeCCCchHHHHHHHHHHHH
Q 000607 21 FARNYQLEALENALK----QN----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~n----~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++|+|..+.+.... ++ .++.+|.|+||+..|..+++.+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 367888888776654 22 8899999999999988877765
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.6 Score=58.41 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 21 FARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.+.+-|.+++..++.. -++|.+..|+|||.+.-.++..+.. +....+..++.++|| ...+..++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~-l~e~~g~~V~glAPT----gkAa~~L~e 902 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNM-LPESERPRVVGLGPT----HRAVGEMRS 902 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHH-HhhccCceEEEEech----HHHHHHHHH
Confidence 5789999999999964 3889999999999985444443322 212345678899999 444455543
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=4 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988777655
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.5 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|+++|.|+|||.+|..+.+.+
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7999999999999998877765
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.7 Score=55.14 Aligned_cols=36 Identities=33% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.-.+.|..+++. + .|++++.|+|||.+|..+.+.+
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445555543 3 6899999999999998877765
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.99 E-value=4.1 Score=49.49 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=83.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcE
Q 000607 43 ETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEV 122 (1396)
Q Consensus 43 ~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~V 122 (1396)
.+++||+-..++.++.+.. .+-.+.++|-|-+.+=+.|.+.++..+-++++..++|+......+...-.-......|
T Consensus 365 lvF~gse~~K~lA~rq~v~---~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA---SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred heeeecchhHHHHHHHHHh---ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 3689999999888887644 3344557777888888999999998777999999999843322111111222236788
Q ss_pred EEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 123 LVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 123 iV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
+|||- .+.+| +.+..+++||-+..-... ..|. +|| |.||++.+..
T Consensus 442 LicTd-----ll~RG-iDf~gvn~VInyD~p~s~---------~syi-----------hrI-GRtgRag~~g 486 (593)
T KOG0344|consen 442 LICTD-----LLARG-IDFKGVNLVINYDFPQSD---------LSYI-----------HRI-GRTGRAGRSG 486 (593)
T ss_pred EEehh-----hhhcc-ccccCcceEEecCCCchh---------HHHH-----------HHh-hccCCCCCCc
Confidence 99985 45555 788999999986654332 2233 345 9999987743
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.93 E-value=12 Score=45.79 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCcccchHHHHHHHHHHhc----C-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 17 DTLPFARNYQLEALENALK----Q-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~----~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
.....+-|||.-++-.+.. + -.+|.+|-|-|||..+..++....-... ..+..+.+++|+..-+.+-.
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhh
Confidence 3445589999999988873 1 2789999999998877654433222222 46677999999987777766
Q ss_pred HHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcE-EEec-HHHHHHhHh--hcCccccceeEEEEeccccccCC-Cc
Q 000607 86 EAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEV-LVMT-PQILLDGLR--LSYFKLNMIKVLILDECHHARGK-HQ 160 (1396)
Q Consensus 86 ~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~V-iV~T-~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~-~~ 160 (1396)
..++...-..- .+.- ......+.+ ++.. -...+..+. .+...-.+..+.||||-|...+. .-
T Consensus 136 ~~ar~mv~~~~-~l~~------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~ 202 (546)
T COG4626 136 NPARDMVKRDD-DLRD------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDM 202 (546)
T ss_pred HHHHHHHHhCc-chhh------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHH
Confidence 66664321000 0000 000001111 1111 011111122 12344456789999999999875 23
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeE
Q 000607 161 YACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKV 217 (1396)
Q Consensus 161 ~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i 217 (1396)
|+.+..+. ...+.+.+++.|-+.....+ -+.+........++..+
T Consensus 203 ~~~~~~g~-------~ar~~~l~~~ITT~g~~~~g-----~~~q~~~y~k~vl~g~~ 247 (546)
T COG4626 203 YSEAKGGL-------GARPEGLVVYITTSGDPPAG-----VFKQKLQYAKDVLDGKI 247 (546)
T ss_pred HHHHHhhh-------ccCcCceEEEEecCCCCCcc-----HHHHHHHHHHHHhcCCc
Confidence 33332222 23456778888764433322 23445556666666543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=85.93 E-value=10 Score=43.20 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=30.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~ 94 (1396)
+++++++|+|||.++..+...+.. .+++++++. .+ +.-+.+|...+....++
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~-----~g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK-----QGKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 558899999999998887765532 345565554 33 33233344434343443
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=5.8 Score=49.79 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=41.0
Q ss_pred cCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 35 KQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 35 ~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
++=.++..|=|.|||.+..+++-+++.. .+.++++.+|...-+.+..+.++..+
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 3458899999999999988766665432 35789999999888888777666543
|
|
| >PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function | Back alignment and domain information |
|---|
Probab=85.81 E-value=5.8 Score=36.39 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=54.6
Q ss_pred hhhhhhhhHHHHHHHHHHH--HhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCcc
Q 000607 998 SLETLGDSFLKYAASQQLF--KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYEL 1075 (1396)
Q Consensus 998 rLE~LGDs~Lk~~~s~~l~--~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~ 1075 (1396)
-|.-+|||...|+.|.-|- ..+|.- .-|-|..|+..-...||.+.+. |.
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~----------PR--------- 52 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLP----------PR--------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS------------C---------
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCc----------cc---------
Confidence 3678999999999998874 445542 3478999998888888887775 11
Q ss_pred CcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh--hHHHHHHh
Q 000607 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE--NVGLIFLD 1124 (1396)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~--~~a~~~~~ 1124 (1396)
+....-.|..||+|.-+|+.|-+ +.|..+++
T Consensus 53 ------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 12345589999999999999875 45555554
|
; PDB: 1ZTD_A. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=85.71 E-value=2.6 Score=49.56 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~ 58 (1396)
-++-..+.+..++. +++++++|+|+|||..|..+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 45555555544432 25999999999999998765543
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=85.64 E-value=3.1 Score=45.87 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhcC----CEEEEeCCCchHHHHH
Q 000607 23 RNYQLEALENALKQ----NTIVFLETGSGKTLIA 52 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~ia 52 (1396)
|.-..+.+..++.+ .++|.+|-|+|||...
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44444555555542 3889999999999863
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.57 E-value=3.3 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||..|..+.+.+
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8899999999999998887765
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.4 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+++.+
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6899999999999998877765
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.5 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHhc-C---C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALK-Q---N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~-~---n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
...+.+..+++ + + .|+++|.|+|||.+|..+.+.+
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33444555544 3 2 6899999999999998777765
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.31 E-value=6.9 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+.+|.|+|||..|..+.+.+
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999988776654
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.26 E-value=2.4 Score=48.29 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=21.2
Q ss_pred HHHHHhcCC----EEEEeCCCchHHHHHHHHHH
Q 000607 29 ALENALKQN----TIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 29 ~~~~~l~~n----~Iv~~~TGsGKT~iailli~ 57 (1396)
++..+++.| +|+++|.|+|||.+|-+++.
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 344555543 89999999999998765543
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.6 Score=41.81 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
+++.+++|+|||..+..++..+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999998877766543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.2 Score=52.16 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=33.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~ 95 (1396)
++|++++|+|||..++.++..++. ..+..++|+..- .-..|....+ ....++.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVAL----REGKPVLFFSLE-MSAEQLGERLLASKSGIN 250 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCC
Confidence 789999999999999887766542 134557777633 2334444433 3334443
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=85.12 E-value=2.7 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.4
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||..|..+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999998765544
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.00 E-value=1.7 Score=52.45 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l 59 (1396)
.-++|.+.+..++++ + +++.+|||||||..--.++.++
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 367888888888886 3 7799999999998754444433
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=84.96 E-value=1.2 Score=50.79 Aligned_cols=52 Identities=27% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 24 NYQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 24 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
+...+.+..+.+ +|++++++||||||...-.++..+ .. ...+++.+-.+.++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i----~~-~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI----PP-EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC----HT-TTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc----cc-cccceEEeccccce
Confidence 344455555533 489999999999998865555433 11 23678888877766
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.91 E-value=3.2 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+...+.+..+++. + .|++||.|+|||.+|-.+.+.+
T Consensus 24 e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 24 DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3334455555543 2 6899999999999987776654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=12 Score=43.53 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=62.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+.+++|+|+|||.++..+...+. ..+++++++. .+ +.-+.+|........++.+. ....+.+
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~--~~~~~~d--------- 180 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI--AQKEGAD--------- 180 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCccchhhHHHHHHHHHHcCceEE--EeCCCCC---------
Confidence 55899999999999877666542 2344565554 43 33333333333333343332 1111111
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC-CCCCCCeEEEEeccCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET-GDSNLPRIFGMTASPI 191 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~-~~~~~p~ilgLTATp~ 191 (1396)
+ .....+.+... ...++++||+|=+-+...+.....-++.+....-.. ...+...+|-+.||-.
T Consensus 181 ----p------a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 181 ----P------ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245 (318)
T ss_pred ----H------HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence 0 01112222211 125789999999988765433333334433211000 1122235788999853
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=4.6 Score=50.42 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=79.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-----CeEEEEeCCCCcccCCcc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-----LKVGKYWGDMGVDFWDGA 111 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-----~~v~~~~G~~~~~~~~~~ 111 (1396)
-+++..|==.|||.+.+..|..++. .-.+.++++.+|...-+....++++..+. ..+..+.|+ ..
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~---s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I------ 325 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALA---TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI------ 325 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHH---hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE------
Confidence 4889999999999987744432221 22578899999999999998888876432 123223332 11
Q ss_pred chHHhhc-c--CcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEec
Q 000607 112 TWKEEMS-K--HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188 (1396)
Q Consensus 112 ~~~~~~~-~--~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTA 188 (1396)
...+. + ..|.+.|. -..+..+-..++++|+|||+.+..+ .+..++ .+. ....|+++.+|-
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l-------~~~n~k~I~ISS 388 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFL-------NQTNCKIIFVSS 388 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHH-------hccCccEEEEec
Confidence 00111 1 25555533 1223455568999999999998864 566655 443 123688888875
Q ss_pred c
Q 000607 189 S 189 (1396)
Q Consensus 189 T 189 (1396)
|
T Consensus 389 ~ 389 (738)
T PHA03368 389 T 389 (738)
T ss_pred C
Confidence 5
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.63 E-value=5.9 Score=45.98 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhc----C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK----Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~----~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.|+|....+...+ + -.++.+|.|.||+..|..+++.+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 56777776665553 2 28899999999999988777655
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=84.59 E-value=2.5 Score=54.55 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=66.0
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecc-cccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSI-LEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsv-leeGiDI 464 (1396)
.+.+++|-++++.-|...++.++++.+. .++++..++|+. +.+++.++++..++|+.+|+|+|.. +.+++++
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~------~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-LGIEVALLTGSL------KGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCC------CHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 4678999999999999999888876443 378999999974 7788899999999999999999964 5567777
Q ss_pred CcccEEE
Q 000607 465 QSCNLVI 471 (1396)
Q Consensus 465 p~~~lVI 471 (1396)
.++.+||
T Consensus 356 ~~l~lvV 362 (630)
T TIGR00643 356 KRLALVI 362 (630)
T ss_pred cccceEE
Confidence 7888777
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=84.46 E-value=1.5 Score=57.71 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
.+.+-|.+++.. ..++++|.+..|||||.+.+..|.++.+.. .-...++++|+-|+.-+....+.+.+..
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 4 HLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred ccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 378899999975 468999999999999999887776665421 1244679999999888877777777653
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.3 Score=54.68 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=52.1
Q ss_pred HHHhcCCeeEEEEecccccccCCCcccEE--------EEeCCCCcHHHHHHhhhcccCCCC----cEEEEEe
Q 000607 442 EEFRRGLVNVIVATSILEEGLDVQSCNLV--------IMFDPSRTVCSFIQSRGRARMQNS----DYLLMVK 501 (1396)
Q Consensus 442 ~~Fr~g~~nvLVaTsvleeGiDIp~~~lV--------I~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~ 501 (1396)
++|-+|+..|-|-+..++-||-+++-.-| |-..+|||...-||..||++|.++ .|+.+++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 46999999999999999999999875544 568999999999999999999874 6888876
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.38 E-value=6.7 Score=47.90 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=74.1
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-----cc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-----IL 458 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-----vl 458 (1396)
...+.++||-++||+-|..+...+.++... ..+++.++.|.. +...|.+-++ ..+.|+|||. .+
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~-~~~~~~cvyGG~------~~~~Q~~~l~----~gvdiviaTPGRl~d~l 230 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKS-LRLRSTCVYGGA------PKGPQLRDLE----RGVDVVIATPGRLIDLL 230 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCC-CCccEEEEeCCC------CccHHHHHHh----cCCcEEEeCChHHHHHH
Confidence 345788999999999999999999988544 357799999986 5555544444 2478999995 68
Q ss_pred ccc-cCCCcccEEEE------eC--CCCcHHHHHHhhhcccC
Q 000607 459 EEG-LDVQSCNLVIM------FD--PSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 459 eeG-iDIp~~~lVI~------fD--~p~s~~~yiQr~GRA~R 491 (1396)
++| +|+..|.++|. +| .-...+..++..+|..|
T Consensus 231 e~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 231 EEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred HcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 888 89999999983 33 33456778888888877
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=84.35 E-value=3.9 Score=46.10 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHhcCC-----EE-EEeCCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 29 ALENALKQN-----TI-VFLETGSGKTLIAIMLLRSYAYLL-RKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 29 ~~~~~l~~n-----~I-v~~~TGsGKT~iailli~~l~~~~-~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
.++.++.|. +. ++++.|+|||..++.+.....-.. ..+.+.+++++--....-.+-...+.+..++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------- 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------- 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-------
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc-------
Confidence 567777652 33 999999999999876543221001 1224567888876655544333333322111
Q ss_pred CCCcccCCccchHHhhccCcEE-EecHHHHHHhHhhc--CccccceeEEEEeccccc
Q 000607 102 DMGVDFWDGATWKEEMSKHEVL-VMTPQILLDGLRLS--YFKLNMIKVLILDECHHA 155 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~Vi-V~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~ 155 (1396)
+ .+..+++..|. +.+...+...+.+- .+.-.++.|||+|-.=..
T Consensus 99 ----~------~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 99 ----D------PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp -----------HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ----c------cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1 12333333332 34556666655432 233367999999986543
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=84.15 E-value=4.6 Score=48.05 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 28 EALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 28 e~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.-+++++.+ . +++.+++|+|||..+..++..++. .+.+++++.-. +-..|.....+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~-----~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-----RGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEECC-cCHHHHHHHHH
Confidence 356666654 2 779999999999988776665532 34568887654 33455544443
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=3.4 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+++++|+|+|||..|-.+++.+
T Consensus 41 ~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999887666543
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.09 E-value=8.3 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||.+|-.+++.+
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999999988777765
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.1 Score=52.83 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~ 95 (1396)
+||++.||.|||..++-++.+.+. .++.++|+..- .=..|....+ ....++.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~-----~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~ 247 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN-----QDKGVAFFSLE-MPAEQLMLRMLSAKTSIP 247 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh-----cCCcEEEEeCc-CCHHHHHHHHHHHhcCCC
Confidence 779999999999999887766532 34557776544 3345555444 3334443
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.92 E-value=5.9 Score=48.25 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCeEEeccChhhhccc
Q 000607 201 DYWQKIHDLETLMNSKVYTCASESVLSNF 229 (1396)
Q Consensus 201 ~~~~~i~~Le~~L~~~i~~~~~~~~l~~~ 229 (1396)
+++..+.++.+-++-..+++.++..|.+|
T Consensus 604 dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 604 DVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 55666777788888888888888888765
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.85 E-value=1.3 Score=44.92 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=52.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe-CCCCcccCCccchHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW-GDMGVDFWDGATWKE 115 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~-G~~~~~~~~~~~~~~ 115 (1396)
++.|.+++|+|||....-++.. ++..+-+..=|++|-+- +=.+..|+++..+. |....-. ....-..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~----L~~~g~kvgGf~t~EVR-------~gGkR~GF~Ivdl~tg~~~~la-~~~~~~~ 74 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEK----LREKGYKVGGFITPEVR-------EGGKRIGFKIVDLATGEEGILA-RVGFSRP 74 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHH----HHhcCceeeeEEeeeee-------cCCeEeeeEEEEccCCceEEEE-EcCCCCc
Confidence 5789999999999876544433 33334556667777531 11122456665554 3211000 0000011
Q ss_pred hhccCcEEEecHH-HHHHhHhhcCccccceeEEEEecccccc
Q 000607 116 EMSKHEVLVMTPQ-ILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 116 ~~~~~~ViV~T~q-~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
....+-|.|-..+ +....+++.+ ..-+++|+||.--+-
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~---~~aDvIIIDEIGpME 113 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRAL---EEADVIIIDEIGPME 113 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHh---hcCCEEEEecccchh
Confidence 1112333333333 3333444333 347999999987553
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=5.5 Score=43.96 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 28 EALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 28 e~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
+.++.++.+ . +.+++++|+|||..+..++...+. .+.+++|+.--
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~-----~~~~v~yi~~e 60 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK-----NGKKVIYIDTE 60 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEECC
Confidence 346667753 2 679999999999999887765543 24556666433
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=83.54 E-value=1.1 Score=49.95 Aligned_cols=41 Identities=34% Similarity=0.630 Sum_probs=29.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCcccHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
.+|.+|||+||+.. ++.+.. .+-.|....|+|++|++..+-
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 56999999999975 444322 122456778999999987644
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.5 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=18.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.+++|||+|||.++..+...+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHH
Confidence 5599999999999988776544
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.49 E-value=7.7 Score=49.02 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+.-.+.+..+++. + .|+++|.|+|||.+|-.+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344455555542 3 6789999999999988777655
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.29 E-value=3.6 Score=53.30 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.9
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++|+++|+|+|||.+|-.+.+
T Consensus 54 slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999998866554
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.24 E-value=14 Score=39.58 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe---CCcccHHHHHH----HHHHhcCCeEEEEeCCCCcccCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV---PKVVLVPQQAE----AIKMHTDLKVGKYWGDMGVDFWDG 110 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv---Pt~~Lv~Q~~~----~i~~~~~~~v~~~~G~~~~~~~~~ 110 (1396)
++|-++.|+|||....-++.-++. ++.++.+++ ++++...|... ....+..-+...+.-+...-.|..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~-----~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~ 105 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLM-----NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGR 105 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHh-----CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccCh
Confidence 789999999999987766654433 456666666 33334333221 001111111122221111223333
Q ss_pred cchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH---HHHHHHhhccCCCCCCCeEEEEe
Q 000607 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI---MTEFYHRLLETGDSNLPRIFGMT 187 (1396)
Q Consensus 111 ~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i---m~~f~~~~~~~~~~~~p~ilgLT 187 (1396)
..-+ .+++.+. .+.+..+-+++|+|=-.+..-+.....+ |..+. .....-+++.+|
T Consensus 106 ~~~~--------------~~L~~l~-~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r------~l~d~gKvIilT 164 (235)
T COG2874 106 RSAR--------------KLLDLLL-EFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLR------KLSDLGKVIILT 164 (235)
T ss_pred HHHH--------------HHHHHHH-hhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHH------HHHhCCCEEEEE
Confidence 2222 2233222 1333567799999999888866544444 33322 123456899999
Q ss_pred ccCCC
Q 000607 188 ASPIK 192 (1396)
Q Consensus 188 ATp~~ 192 (1396)
+-|..
T Consensus 165 vhp~~ 169 (235)
T COG2874 165 VHPSA 169 (235)
T ss_pred eChhh
Confidence 99854
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.9 Score=46.04 Aligned_cols=32 Identities=31% Similarity=0.227 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHH
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIM 54 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iail 54 (1396)
-+.|.+.+..+.+. +++++++||||||...-.
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 45678888887774 799999999999986443
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=3.6 Score=48.10 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHhc-C-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 28 EALENALK-Q-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 28 e~~~~~l~-~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
..++.++. | . +.|++|+|||||..++.++..... .+.+++|+-.--.+-.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 35667776 4 2 569999999999999887765532 3556788776655543
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.02 E-value=21 Score=41.05 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=72.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++-.|+|||....-+.+++.. .++++++.+ . -|+=+..|-+.+-+..|..+.. |..+.|.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~-----~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~--~~~G~Dp-------- 206 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ-----QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS--GKEGADP-------- 206 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH-----CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc--cCCCCCc--------
Confidence 669999999999987666665532 455666655 3 3455556666666656655543 2222221
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH--hhccCCCCCCCe--EEEEeccCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH--RLLETGDSNLPR--IFGMTASPI 191 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~--~~~~~~~~~~p~--ilgLTATp~ 191 (1396)
..+..+.++++. -..++++++|=|=++-++ ..+|.++.. +..+......|+ ++.+=||-+
T Consensus 207 -----------AaVafDAi~~Ak--ar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 207 -----------AAVAFDAIQAAK--ARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred -----------HHHHHHHHHHHH--HcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 123445555443 357899999999988765 233443322 112222233454 445578876
Q ss_pred CC
Q 000607 192 KS 193 (1396)
Q Consensus 192 ~~ 193 (1396)
++
T Consensus 271 qn 272 (340)
T COG0552 271 QN 272 (340)
T ss_pred hh
Confidence 63
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.99 E-value=5.1 Score=44.52 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=65.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.+++.+|+|+||++.|-.+..+. + .++|-|-+..|+..|.-+=++.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA-------n--STFFSvSSSDLvSKWmGESEkL------------------------- 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA-------N--STFFSVSSSDLVSKWMGESEKL------------------------- 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc-------C--CceEEeehHHHHHHHhccHHHH-------------------------
Confidence 38899999999999886655432 1 4888888888888775333321
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC------CcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK------HQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~------~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
+.+++. .-+-+.-++|.+||.+.+.+. .+.++|-.+|+-. +.-...+...+|.|-||-
T Consensus 214 -------------VknLFe--mARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ-MqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 214 -------------VKNLFE--MARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ-MQGVGNDNDGVLVLGATN 277 (439)
T ss_pred -------------HHHHHH--HHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh-hhccccCCCceEEEecCC
Confidence 011111 111246788999999977642 4567777777743 332334445566666664
Q ss_pred C
Q 000607 191 I 191 (1396)
Q Consensus 191 ~ 191 (1396)
+
T Consensus 278 i 278 (439)
T KOG0739|consen 278 I 278 (439)
T ss_pred C
Confidence 3
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=9.1 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.1
Q ss_pred CEEE-EeCCCchHHHHHHHHHH
Q 000607 37 NTIV-FLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv-~~~TGsGKT~iailli~ 57 (1396)
+.++ ++|+|+|||..+-.+..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4554 89999999998765544
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=1.4 Score=49.71 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=25.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
|+++.+|+|+|||..+..+...... .+..++|+.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~-----~G~~v~~~~ 137 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVR-----AGIKVRFTT 137 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEe
Confidence 7999999999999998876554322 355566653
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.69 E-value=5.8 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+.+.+
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998777765
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=82.63 E-value=4.1 Score=58.84 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.+-|.+++..++.. + ++|.+..|+|||.+...++..+.+.... .+..++.++|| ...++.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~g~~v~glApT----~~Aa~~L~~ 1086 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-EQLQVIGLAPT----HEAVGELKS 1086 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-cCCeEEEEeCh----HHHHHHHHh
Confidence 35799999999999864 3 6789999999998864333433333322 45678999999 444555553
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.55 E-value=1.6 Score=49.99 Aligned_cols=53 Identities=23% Similarity=0.120 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
.+-|.+.+..+.+. |++|++.||||||...=.+.. . -++..|++.+-.|-+|-
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~----~--i~~~eRvItiEDtaELq 213 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG----F--IDSDERVITIEDTAELQ 213 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHh----c--CCCcccEEEEeehhhhc
Confidence 44566666666664 999999999999976432222 1 24555888888887773
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=82.46 E-value=5.8 Score=42.39 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
..++.+|.|+|||..|..+++.+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999988777765
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=82.23 E-value=5.8 Score=55.92 Aligned_cols=66 Identities=20% Similarity=0.081 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.+-|.+++..++.. + ++|.+..|+|||.+.-.++..+ +.+....+.+++.++|| ..-+..++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~-~~l~~~~~~~V~glAPT----grAAk~L~e 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAV-NTLPESERPRVVGLGPT----HRAVGEMRS 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhhcccCceEEEECCc----HHHHHHHHh
Confidence 34789999999999974 3 8899999999998854444433 22222245678889999 344444543
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=2.6 Score=51.55 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhc---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALK---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+-|.+.+..+.. |.+++++|||||||.....++.++ . ...++++-+-..++.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~----~-~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL----N-TAQINICSVEDPVEI 258 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh----C-CCCCEEEEecCCccc
Confidence 56778888887765 358899999999998765455543 1 234556655555543
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=82.11 E-value=2.5 Score=53.19 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH-HHHHhc--
Q 000607 19 LPFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE-AIKMHT-- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~-~i~~~~-- 92 (1396)
.....|||.|.++.+-.. .+.+..++-+|||.++...|-+..+ ..+ ..++++.||..++..+.+ .|...+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~---~~P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID---QDP-GPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE---eCC-CCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 345789999999988874 5889999999999976655543322 223 449999999999888663 333321
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-----CcHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-----HQYACIM 165 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-----~~~~~im 165 (1396)
.++ ..+......+ -......+.+.+..+.+.....- ..+.-..+.++++||.+..-.+ +|.....
T Consensus 90 sp~l~-~~~~~~~~~~-~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 90 SPVLR-RKLSPSKSRD-SGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred CHHHH-HHhCchhhcc-cCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 111 1122210000 01122334444555666554322 1233457899999999999532 4555544
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
++... ....+ .+.+..||....
T Consensus 162 ~R~~t------f~~~~-K~~~~STPt~~~ 183 (557)
T PF05876_consen 162 KRTKT------FGSNR-KILRISTPTIEG 183 (557)
T ss_pred HHHhh------hccCc-EEEEeCCCCCCC
Confidence 43221 11233 455666887653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.6 Score=47.24 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
-+++++|||||||.....++..+. .+.+++++++....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~----~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN----KNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh----hcCCcEEEEEcCCccc
Confidence 478999999999988665555442 2234567777766554
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=82.08 E-value=6.3 Score=43.48 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCccc
Q 000607 29 ALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 29 ~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~L 80 (1396)
.++.++.+ . +.|++++|+|||..+..++........ ...+..++++.....+
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~ 65 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF 65 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC
Confidence 45666653 3 679999999999998876654321000 0012567777765443
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=2 Score=48.77 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=28.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
++++.+++|+|||+.+..++.++... .+..++|+.. ..+..
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~----~g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRK----KGVPVLYFPF-VEGFG 159 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhh----cCceEEEEEH-HHHHH
Confidence 69999999999999988777765431 1455666553 34433
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.97 E-value=4.9 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=17.5
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||++|-.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999998765544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=81.94 E-value=10 Score=49.35 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
+.|-...+..+.... ..+.++||.++++..+..+.+.|++. -+.++..+||. ++..+|.+...+.++|+
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~----fg~~v~~~~s~------~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR----FGAPVAVLHSG------LSDGERLDEWRKAKRGE 241 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH----hCCCEEEEECC------CCHHHHHHHHHHHHcCC
Confidence 567776666555432 24678999999999999999999865 25678889987 48888999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFD 474 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD 474 (1396)
.+|+|+|..+- =+.+.+..+||.-+
T Consensus 242 ~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 242 AKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCEEEeccHHh-cccccCCCEEEEEC
Confidence 99999996432 14566788888654
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=81.91 E-value=15 Score=42.88 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++.+.+.+..++++ ++++++|+|+|||.++-.+...+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55556666665543 49999999999999887666554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=81.87 E-value=4.1 Score=54.27 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-ccccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-ILEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-vleeGiDI 464 (1396)
.+.+++|.|+++.-|...++.+++.... -++++..++|.. +.+++.++++.+++|+.+|+|+|. .+...+.+
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~------~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f 571 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFR------SAKEQNEILKELASGKIDILIGTHKLLQKDVKF 571 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccc------cHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc
Confidence 4578999999999999999988875433 257788888864 778889999999999999999996 45566777
Q ss_pred CcccEEEE
Q 000607 465 QSCNLVIM 472 (1396)
Q Consensus 465 p~~~lVI~ 472 (1396)
.++.+||.
T Consensus 572 ~~L~llVI 579 (926)
T TIGR00580 572 KDLGLLII 579 (926)
T ss_pred ccCCEEEe
Confidence 77777663
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=4 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=8 Score=46.62 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc-HHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL-VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
+.+++|||+|||.....+...+. .+..+.+..++.+++.-. ..+|...+.+..++.+...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~~--~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v----------------- 254 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARAV--IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI----------------- 254 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC-----------------
Confidence 66999999999887665443321 112233445555655222 2334445555445444321
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
.++.-+...+. .+.+.+++++|.+=+...+.....-+..+. ........+|.|+||-.
T Consensus 255 --------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~-----~~~~~~~~~LVl~at~~ 312 (420)
T PRK14721 255 --------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLS-----QCGTQVKHLLLLNATSS 312 (420)
T ss_pred --------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHh-----ccCCCceEEEEEcCCCC
Confidence 22222222222 246778999998633322211222222221 11223346788999853
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.41 E-value=9.1 Score=44.59 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHh----cC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENAL----KQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l----~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|||....+... ++ -.++.+|.|.||+..|..+.+.+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 455555555444 23 27799999999999988777655
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=80.98 E-value=2.2 Score=47.34 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCcEEEEEeCCcccHHHHHHHHHHhc--CCeEEEEeCCC-CcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccc
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKMHT--DLKVGKYWGDM-GVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNM 143 (1396)
Q Consensus 67 ~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~~G~~-~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~ 143 (1396)
+.+.++||+.+--=|....+.++.+. +..|..+++-. .++ . +...-.-...+|.|+||+++..++..+-+.+++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~--e-qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLE--E-QVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHH--H-HHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 45778888888333445556666553 23444444431 111 0 111111126899999999999999999999999
Q ss_pred eeEEEEecccccc
Q 000607 144 IKVLILDECHHAR 156 (1396)
Q Consensus 144 i~llI~DEaH~~~ 156 (1396)
+.+||+|--|.=.
T Consensus 202 l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 202 LKRIVLDWSYLDQ 214 (252)
T ss_pred CeEEEEcCCcccc
Confidence 9999999877544
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=80.84 E-value=7.1 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
|-+.|..++|.|||.+|+....+.+. .+.+++|+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG-----HGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEE
Confidence 34678999999999999885443322 46667773
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.74 E-value=3.9 Score=50.93 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..++-.-|..+++..+.. =.|+.+|+|+|||++.+.++..++.... ....-.++++|=|+.-++|.-..+-.+
T Consensus 376 ~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~ 450 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH 450 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc
Confidence 345778899999999987 4899999999999999998887765321 113456899999999999987777654
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=80.38 E-value=6.4 Score=48.26 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 28 EALENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 28 e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-++.++.| -+++.+++|+|||..+..++..+.. .+.+++++.-. +-..|.....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-----~g~~vlYvs~E-es~~qi~~ra~r 129 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-----AGGKVLYVSGE-ESASQIKLRAER 129 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEcc-ccHHHHHHHHHH
Confidence 356677764 2779999999999988776665532 35568887754 444565544443
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=80.06 E-value=3.2 Score=49.21 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++++|++|||||||...-.++.++.+ .++..+++.+-...++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~---~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE---TYPDRKIVTYEDPIEY 191 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh---cCCCceEEEEecCchh
Confidence 57999999999999887666665432 2334566666655555
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1396 | ||||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 4e-37 | ||
| 3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 2e-35 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 2e-31 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 1e-13 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 6e-13 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 1e-12 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 7e-12 | ||
| 1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 9e-12 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 1e-11 | ||
| 3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 2e-11 | ||
| 1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 2e-11 | ||
| 1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-11 | ||
| 1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-11 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 3e-11 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 1e-05 | ||
| 1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 4e-11 | ||
| 2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 | 4e-11 | ||
| 1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 5e-11 | ||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 6e-11 | ||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 7e-06 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 8e-11 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 9e-06 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 7e-10 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 1e-07 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 8e-10 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 2e-07 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 9e-10 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 1e-07 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 4e-09 | ||
| 1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 2e-08 | ||
| 2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 2e-08 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 2e-07 | ||
| 3b6e_A | 216 | Crystal Structure Of Human Dech-Box Rna Helicase Md | 1e-06 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 5e-05 | ||
| 2fwr_A | 472 | Structure Of Archaeoglobus Fulgidis Xpb Length = 47 | 9e-05 | ||
| 2fzl_A | 219 | Structure Of C-Terminal Domain Of Archaeoglobus Ful | 2e-04 |
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
|
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
|
| >pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
|
| >pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
|
| >pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 | Back alignment and structure |
|
| >pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
|
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
|
| >pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain Length = 216 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb Length = 472 | Back alignment and structure |
|
| >pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb Length = 219 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 322 bits (827), Expect = 2e-97
Identities = 111/531 (20%), Positives = 211/531 (39%), Gaps = 31/531 (5%)
Query: 22 ARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
RNYQLE A K +NTI+ TG GKT +++++ + VF ++ +
Sbjct: 5 PRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV 64
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF- 139
QQA + + ++G + D + + + ++++++TPQIL++ L
Sbjct: 65 YEQQATVFSRYFE-RLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIP 123
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
L++ ++I DECH+ H Y IM + L LP++ G+TAS ++E
Sbjct: 124 SLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAE 183
Query: 200 QDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259
+ Q I L +++ V ++V + K + + +L M
Sbjct: 184 -EAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL-M 241
Query: 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSE-LGVWLALKAAETISCYESDF 318
E + + +L + R+ ++ + + + V+ E ++ F
Sbjct: 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALF 301
Query: 319 FAWEQLDGFGETII---KKFGSDASQALVTYVPSGAEWSIGDDSKF-------------- 361
L + + +I +DA L + E + + +
Sbjct: 302 LYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK 361
Query: 362 -NLDSGLLTEKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKT 419
+ D K+ L L E Y + + I+FV+ L+ + E P K
Sbjct: 362 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKP 420
Query: 420 KYIAGNNS--GIQCQSRKKQNEIVEEFR-RGLVNVIVATSILEEGLDVQSCNLVIMFDPS 476
+ G + Q ++E FR G N+++ATS+ +EG+D+ CNLVI+++
Sbjct: 421 GILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480
Query: 477 RTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLS 527
V IQ+RGR R ++S L+ S D + + + M + +L
Sbjct: 481 GNVIKMIQTRGRGRARDSKCFLLTSSAD--VIEKEKANMIKEKIMNESILR 529
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 318 bits (814), Expect = 2e-95
Identities = 112/538 (20%), Positives = 211/538 (39%), Gaps = 38/538 (7%)
Query: 15 SADTLPFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVF 73
+ +T AR+YQ+E + A+ +N ++ TGSGKT ++I++ + + VF
Sbjct: 2 AMETKK-ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVF 60
Query: 74 LVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDG 133
L KV + QQ K H + + G G + + + ++ + +++V+TPQIL++
Sbjct: 61 LATKVPVYEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 134 LRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192
L++ ++I DECH+ G H Y +MT + + + LP+I G+TAS
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQ-LPQILGLTASVGV 178
Query: 193 SKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252
+ E + + I L + ++ + + E++ + + H +
Sbjct: 179 GNAKNIE-ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237
Query: 253 LADELAMIELKHTRSLENLD--------------------LNEAQAELIRKKVSKINSTL 292
+ L R++ ++D + + + L++ + + S +
Sbjct: 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 297
Query: 293 LYCLSELGVWLA-LKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGA 351
L L A IS A L F + ++ Q L
Sbjct: 298 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKE 357
Query: 352 EWSIGDDSKFNLDSGLLTEKIVCLIESLL-EYRGVEDIRCIIFVERVITAIVLQSLLSEL 410
I + D K+ L+ L YR R ++F + L+ + E
Sbjct: 358 PELI----ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN 413
Query: 411 LPRHCTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVN-VIVATSILEEGLDVQSC 467
P K + G Q + Q +++ F+ N +++ATS+ +EG+D+ C
Sbjct: 414 -PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472
Query: 468 NLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
NLV++++ S V IQ RGR R S +L+ + + Y M K V
Sbjct: 473 NLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKE--EMMNKAV 528
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 310 bits (794), Expect = 4e-89
Identities = 111/587 (18%), Positives = 216/587 (36%), Gaps = 43/587 (7%)
Query: 22 ARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
AR+YQ+E + A+ +N ++ TGSGKT ++I++ + + VFL KV +
Sbjct: 249 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF- 139
QQ K H + + G G + + + ++ + +++V+TPQIL++
Sbjct: 309 YEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
L++ ++I DECH+ G H Y +MT + + + LP+I G+TAS + E
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQ-LPQILGLTASVGVGNAKNIE 426
Query: 200 QDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259
+ + I L + ++ + + E++ + + H + + L
Sbjct: 427 -ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485
Query: 260 IELKHTRSLENLD--------------------LNEAQAELIRKKVSKINSTLLYCLSEL 299
R++ +D + + + L++ + + S + L
Sbjct: 486 ETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545
Query: 300 GVWLA-LKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDD 358
L A IS A L F + ++ Q L + + +
Sbjct: 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT----AKFQEKEPEL 601
Query: 359 SKFNLDSGLLTEKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTW 417
+ D K+ L+ L + YR R ++F + L+ + E P
Sbjct: 602 IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYI 660
Query: 418 KTKYIAGNNS--GIQCQSRKKQNEIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFD 474
K + G + Q +++ F+ N +++ATS+ +EG+D+ CNLV++++
Sbjct: 661 KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720
Query: 475 PSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCS 534
S V IQ RGR R S +L+ + + Y M K V
Sbjct: 721 YSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEE--MMNKAVEKIQKWDEE 778
Query: 535 PLNNHMYGEDF------YHVESTGTIATLSSSVSLIYFYCSRLPSDG 575
++ + +L+ C
Sbjct: 779 TFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYACST 825
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 302 bits (773), Expect = 2e-88
Identities = 112/590 (18%), Positives = 217/590 (36%), Gaps = 48/590 (8%)
Query: 22 ARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
RNYQLE A+K +NTI+ TG GKT +++++ + + VF ++ +
Sbjct: 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 73
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY-F 139
Q + + + G G + ++ + ++++++TPQIL++ L+
Sbjct: 74 YEQNKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 132
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
L++ ++I DECH+ +H Y IM + + L LP++ G+TAS +++
Sbjct: 133 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTD 192
Query: 200 QDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH----ALYTHLAD 255
+ I L +++ V ++ + F K + + L
Sbjct: 193 -EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 251
Query: 256 ELAMIELKHTRSLENLDL---------------------NEAQAELIRKKVSKINSTLLY 294
+ + + + LENL + + S+I L
Sbjct: 252 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 311
Query: 295 CLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWS 354
S L + A IS + A + L F + + Q L E
Sbjct: 312 YTSHLRKY---NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF----EEK 364
Query: 355 IGDDSKFNLDSGLLTEKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413
+ + + D K+ L L E Y + I+FV+ L++ + P+
Sbjct: 365 LQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG-NPK 423
Query: 414 HCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFR-RGLVNVIVATSILEEGLDVQSCNLV 470
K + G + Q I++ F+ G N+++ATS+ +EG+D+ CNLV
Sbjct: 424 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 483
Query: 471 IMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHAS 530
I+++ V IQ+RGR R + S L+ + + ++ Y M +L +
Sbjct: 484 ILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQT 541
Query: 531 LPCSPLNNHMY-----GEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDG 575
+ + + + + L+ C L
Sbjct: 542 WDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYT 591
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 295 bits (755), Expect = 4e-88
Identities = 108/509 (21%), Positives = 197/509 (38%), Gaps = 31/509 (6%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R YQ + N ++ L TG GKTLIA+M+ Y L K V + L P LV
Sbjct: 10 PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE---YRLTKYGGKV-LMLAPTKPLV 65
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
Q AE+ + +L K G + + ++ +V+V TPQ + + L L
Sbjct: 66 LQHAESFRRLFNLPPEKIVALTGEKSPE--ERSKAWARAKVIVATPQTIENDLLAGRISL 123
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQD 201
+ +++ DE H A G + Y I E+ + + P + G+TASP + E
Sbjct: 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQ------AKNPLVIGLTASPGSTPEKIMEVI 177
Query: 202 YWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL---YTHLADELA 258
I +E + S V + + L D L
Sbjct: 178 NNLGIEHIEYRSEN------SPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231
Query: 259 MIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDF 318
+ + D+ + + + +++ + + L L ++ A+ + +
Sbjct: 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLET 291
Query: 319 FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIES 378
L + + + ++ + +++A + GL K+ L E
Sbjct: 292 QGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEI 351
Query: 379 LLEYRGV-EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRK 435
+ E ++ + I+F TA + + L + K K G S + S++
Sbjct: 352 IREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG-----IKAKRFVGQASKENDRGLSQR 406
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR-ARMQNS 494
+Q I++EF RG NV+VATS+ EEGLDV +LV+ ++P + IQ RGR R
Sbjct: 407 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPG 466
Query: 495 DYLLMVKSGDSTTQSRLENYLASGNKMRK 523
++++ G ++ + M++
Sbjct: 467 RVIILMAKGTR-DEAYYWSSRQKEKIMQE 494
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 297 bits (761), Expect = 8e-86
Identities = 112/534 (20%), Positives = 214/534 (40%), Gaps = 43/534 (8%)
Query: 22 ARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80
AR+YQ+E + A+ +N ++ TGSGKT ++I++ + + VFL KV +
Sbjct: 249 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308
Query: 81 VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF- 139
QQ K H + + G G + + + ++ + +++V+TPQIL++
Sbjct: 309 YEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
L++ ++I DECH+ G H Y +MT + + + S LP+I G+TAS + E
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA-SQLPQILGLTASVGVGNAKNIE 426
Query: 200 QDYWQKIHDLETLMNSKVYTCASESV--LSNFIPFSTAKFKFYK---YDEIPHALYTHLA 254
+ + I L + ++ + + E++ L F+ + K ++ + ++
Sbjct: 427 -ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485
Query: 255 DELAMIELKHTRS-------------------LENLDLNEAQAELIRKKVSKINSTLLYC 295
+ A++ ++ + +++ S+I L C
Sbjct: 486 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545
Query: 296 LSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSI 355
L + A IS A L F + ++ Q L + +
Sbjct: 546 TEHLRKY---NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT----AKFQEKE 598
Query: 356 GDDSKFNLDSGLLTEKIVCLIESLL-EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414
+ + D K+ L+ L YR R ++F + L+ + E P
Sbjct: 599 PELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PIL 657
Query: 415 CTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVI 471
K + G Q + Q +++ F+ N +++ATS+ +EG+D+ CNLV+
Sbjct: 658 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717
Query: 472 MFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
+++ S V IQ RGR R S +L+ + + Y M K V
Sbjct: 718 LYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKE--EMMNKAV 769
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 235 bits (600), Expect = 4e-70
Identities = 93/263 (35%), Positives = 131/263 (49%), Gaps = 24/263 (9%)
Query: 1146 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 1205
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +L
Sbjct: 10 HLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHL 69
Query: 1206 YNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVD------ 1259
Y SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ V
Sbjct: 70 YEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKN 129
Query: 1260 -----SFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEP 1314
E E PKA+GDI ESLAGAI++DSG + EVV+Q P+++P
Sbjct: 130 EMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQP 189
Query: 1315 MITPETMRFHPVRELTEYCQKNH----FSMKKPVASRISGKAAVTVEVQANGR-LFEHTF 1369
+I + P + E + FS + + V V V+ G+ F+
Sbjct: 190 LIEKFSAN-VPRSPVRELLEMEPETAKFSPAER-----TYDGKVRVTVEVVGKGKFKGV- 242
Query: 1370 LDADKKTAKKVACKEVLKSLRAS 1392
+ AK A + L+SL+A+
Sbjct: 243 -GRSYRIAKSAAARRALRSLKAN 264
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 19/159 (11%)
Query: 982 LEAITTKKCQEDFHLES---LETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038
L+A T + + LE LGD+ L Y ++ L++ + + G+L+ + +++N
Sbjct: 33 LQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT 92
Query: 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKV---- 1094
L + + + S + I + + + + +K
Sbjct: 93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIE 152
Query: 1095 KSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFV 1133
K + D+ E+L GA I++D G+ ++ V
Sbjct: 153 VPKAMGDIFESLAGA-----------IYMDS-GMSLEVV 179
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-59
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 17/205 (8%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
M S E + S + R YQ+E + AL+ +N I+ L TGSGKT +A+ + + +
Sbjct: 13 MGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH 72
Query: 60 AYLLRKPSP-FVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMS 118
+K S + LV KV+LV Q K + G G D ++ E +
Sbjct: 73 LDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG-DTQLKISFPEVVK 131
Query: 119 KHEVLVMTPQILLDGL------RLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172
++++ T QIL + L + +L+ ++I+DECHH + Y IM + +
Sbjct: 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 191
Query: 173 LE--------TGDSNLPRIFGMTAS 189
L+ LP+I G+TAS
Sbjct: 192 LKNNRLKKENKPVIPLPQILGLTAS 216
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 63/272 (23%), Positives = 100/272 (36%), Gaps = 46/272 (16%)
Query: 1137 YQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSY------MLPEIPRCYQRLE 1190
+ ++ V + +F++ LL AL H SY + ++LE
Sbjct: 7 HHHHHHMNESERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLE 66
Query: 1191 FLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL 1250
FLGDAVL+ + LY KYP G L ++SA+ + + A+ S K L K + E
Sbjct: 67 FLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEE 126
Query: 1251 YKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310
++ S+ L D E+L AI++D G E + +
Sbjct: 127 ------KTGGRDRDSI---------------LADAFEALLAAIYLDQG--YEKIKELFEQ 163
Query: 1311 LLEPMITPETMRFHPVR----ELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGR 1363
E I + M+ + L E Q H + + R VEV+ NG+
Sbjct: 164 EFEFYI-EKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGK 222
Query: 1364 LFE----HTFLDADKKTAKKVACKEVLKSLRA 1391
T KK A+K A + + L
Sbjct: 223 TIATGKGRT-----KKEAEKEAARIAYEKLLK 249
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 29/136 (21%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD+ L+ + L+K Y G L+ K S L + + L F+
Sbjct: 63 EKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFL- 121
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTGG 1115
G E GR + +AD EAL+ A +L G
Sbjct: 122 --------------GKGEEKT----GGRD---------RDSILADAFEALLAAIYLDQGY 154
Query: 1116 ENVGLIFLDRIGIKVD 1131
E + +F ++
Sbjct: 155 EKIKELFEQEFEFYIE 170
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L
Sbjct: 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYS 59
Query: 1210 PGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGST 1269
P G+L+ +++ ++ + + L + K LHK I + ++
Sbjct: 60 PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK------------INETI--- 104
Query: 1270 FGWESVTSFPKALGDIIESLAGAIFVDSG----CNREVVFQSIRPLLEPMITPETMRFHP 1325
+GD+ E+L A+++DSG RE+ ++ + + I ++
Sbjct: 105 ------------IGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDY 152
Query: 1326 VRELTEYCQKNHFSMKKPV--ASRISGKA---AVTVEVQANGRLFE---HTFLDADKKTA 1377
L E QK ++P + G VE + + KK A
Sbjct: 153 KTILQEITQKRW--KERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS-----KKEA 205
Query: 1378 KKVACKEVLKSLR 1390
++ A +E++K L
Sbjct: 206 EQRAAEELIKLLE 218
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 45/128 (35%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E+LE LGD+ + + L + N EG LS K +IS L + +L FIR
Sbjct: 37 ETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR-- 94
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
R K+ + DV EAL A
Sbjct: 95 --------------------------------IKRGKINETIIGDVFEALWAA------- 115
Query: 1117 NVGLIFLD 1124
+++D
Sbjct: 116 ----VYID 119
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 67/265 (25%), Positives = 110/265 (41%), Gaps = 43/265 (16%)
Query: 1138 QRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVL 1197
+ + N+ LE L Y F+D +LL+ ALTH S+ + +RLEFLGDAVL
Sbjct: 15 TENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVL 71
Query: 1198 DYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINIT 1257
D ++ YL++K+ + G L+ +R+A VN +A + L IL + E
Sbjct: 72 DLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGG--- 128
Query: 1258 VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMIT 1317
EK S+ L D +E++ GAI +++G E L+E
Sbjct: 129 ---KEKPSI---------------LSDALEAIIGAIHLEAG--FEFAKTIALRLIEKNF- 167
Query: 1318 PETMRFHPVR----ELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFE---- 1366
P+ ++ +L E Q + R G + + +G+
Sbjct: 168 PQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIA 227
Query: 1367 HTFLDADKKTAKKVACKEVLKSLRA 1391
+ KK A+++A K L+ L A
Sbjct: 228 GS-----KKEAQQMAAKIALEKLGA 247
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 39/128 (30%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGD+ L + LF + + EG LS + +++ + K+ L FI
Sbjct: 61 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILM- 119
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
E N NG G++ K ++D +EA+IGA
Sbjct: 120 --------------SVAEEN-----NG------GKE--KPSILSDALEAIIGA------- 145
Query: 1117 NVGLIFLD 1124
I L+
Sbjct: 146 ----IHLE 149
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 9e-30
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 556 TLSSSVSLIYFYCSRLPSDGYFKPTPKFHI----NKEMGICTLYLPNNCPIQTVI--AQG 609
+ SS+S++Y YCSRLP D +F+P P+F IC + LP N PI +
Sbjct: 2 SGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLP 61
Query: 610 NIKTLKQAACLEACKKLHQIGALTDNLLPD 639
+ + K+ ACL+A +LH +G L D LLPD
Sbjct: 62 STEAAKKDACLKAVHELHNLGVLNDFLLPD 91
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 66/260 (25%), Positives = 94/260 (36%), Gaps = 52/260 (20%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIP--RCYQRLEFLGDAVLDYLITVYLYN 1207
+ + L L D LL ALTH SY E +RLEFLGDAVL IT L++
Sbjct: 6 SRQPLLDALGVDLPD-ELLSLALTHRSY-AYENGGLPTNERLEFLGDAVLGLTITDALFH 63
Query: 1208 KYPGLSPGYLTDMRSASVNNDCYALSSV-----KHGLHKHILHASHELYKRINITVDSFE 1262
++P S G L +R++ VN AL+ V GL H+L E +
Sbjct: 64 RHPDRSEGDLAKLRASVVNTQ--ALADVARRLCAEGLGVHVLLGRGEA------NTGGAD 115
Query: 1263 KLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMR 1322
K S+ L D +ESL GAI++ G E + I L P++
Sbjct: 116 KSSI---------------LADGMESLLGAIYLQHG--MEKAREVILRLFGPLL-DAAPT 157
Query: 1323 FHPVR----ELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFE----HTFLD 1371
L E + + +G T V + +
Sbjct: 158 LGAGLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRS--- 213
Query: 1372 ADKKTAKKVACKEVLKSLRA 1391
KK A++ A K+L
Sbjct: 214 --KKEAEQKAAAAAWKALEV 231
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 32/139 (23%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLG---CEQKLPGFI 1053
E LE LGD+ L + LF + + EG L+ + +++ AL + C + L +
Sbjct: 43 ERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV 102
Query: 1054 RTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLS 1112
G E N G KS +AD +E+L+GA +L
Sbjct: 103 LL---------------GRGEANT----GGAD---------KSSILADGMESLLGAIYLQ 134
Query: 1113 TGGENVGLIFLDRIGIKVD 1131
G E + L G +D
Sbjct: 135 HGMEKAREVILRLFGPLLD 153
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 5e-28
Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 49/262 (18%)
Query: 1150 NVRHLESLLNYS-FRDPSLLVEALTHGSY--------MLPEIPRCYQRLEFLGDAVLDYL 1200
+ ++ + Y D +L A H S+ + +RLEFLGD+ L L
Sbjct: 84 SNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGAL 143
Query: 1201 ITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDS 1260
++ +Y ++P + G L+ M+ + VNN+ S K K +
Sbjct: 144 VSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ---------------- 187
Query: 1261 FEKLSLGSTFGWESVTSF----PKALGDIIESLAGAIFVDSGCN-----REVVFQSIRPL 1311
++ K D +E+ GA+ +D +E + +
Sbjct: 188 ---GNIA-----TPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKK 239
Query: 1312 LEPMITPETMRFHPV---RELTEYCQKNHFSMKKPVASRISGKAAV-TVEVQANGRLFEH 1367
L EL E Q N + R + VEV+ L +
Sbjct: 240 LAKSSQMVIKEPLNKNAKNELAELLQINKL--GHKLHYRKLTEMPPFRVEVKIGDILLDE 297
Query: 1368 TFLDADKKTAKKVACKEVLKSL 1389
+ A+ A +VL++
Sbjct: 298 A-EGNSIREAEHRAAMKVLEND 318
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 38/137 (27%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGDS+L S ++ + + +EG+LS KE I++N L + ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQG- 188
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
+ + + K SK AD VEA IGA
Sbjct: 189 -------------NIATPTRV------------VKDK-MSKRYADCVEAYIGA------- 215
Query: 1117 NVGLIFLDRIGIKVDFV 1133
+ +DR G + +
Sbjct: 216 ----LVIDRFGTEFLDI 228
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-28
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 1138 QRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVL 1197
+ + N+ LE L Y F+D +LL+ ALTH S+ + +RLEFLGDAVL
Sbjct: 15 TENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVL 71
Query: 1198 DYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINIT 1257
D ++ YL++K+ + G L+ +R+A VN +A + L IL
Sbjct: 72 DLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL------------- 118
Query: 1258 VDSFEKLSLG--STFGWESVTSFPKALGDIIESLAGAIFVDSGCN--REVVFQSIRPLLE 1313
+S+ + G E P L D +E++ GAI +++G + + + I
Sbjct: 119 ------MSVAEENNGGKEK----PSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 29/137 (21%)
Query: 983 EAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCK 1042
A+T K ++ ++ E LE LGD+ L + LF + + EG LS + +++ + K
Sbjct: 47 HALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAK 106
Query: 1043 LGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADV 1102
+ L FI E N+ G++ K ++D
Sbjct: 107 IANSLNLGDFILM---------------SVAEENN----GGKE---------KPSILSDA 138
Query: 1103 VEALIGA-FLSTGGENV 1118
+EA+IGA L G E
Sbjct: 139 LEAIIGAIHLEAGFEFA 155
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 3e-27
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 30/177 (16%)
Query: 1150 NVRHLESLLNYS-FRDPSLLVEALTHGSY--------MLPEIPRCYQRLEFLGDAVLDYL 1200
+ ++ + Y D +L A H S+ + +RLEFLGD+ L L
Sbjct: 84 SNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGAL 143
Query: 1201 ITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDS 1260
++ +Y ++P + G L+ M+ + VNN+ S K K +
Sbjct: 144 VSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAT----------- 192
Query: 1261 FEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGC-NREVVFQSIRPLLEPMI 1316
+ K D +++ GA+ +D + + + L E +
Sbjct: 193 -PTRVVK--------DKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKL 240
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 38/137 (27%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
E LE LGDS+L S ++ + + +EG+LS KE I++N L + ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQG- 188
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
K SK AD V+A IGA
Sbjct: 189 --------------------------NIATPTRVVKDKMSKRYADCVQAYIGA------- 215
Query: 1117 NVGLIFLDRIGIKVDFV 1133
+ +DR G + +
Sbjct: 216 ----LVIDRFGTEFLDI 228
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 5e-26
Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 42/251 (16%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ ++H +QRLE LGDAVL +++T L +P
Sbjct: 309 DQGRGRGLAGWRTPFGPFGVSH--------TDVFQRLELLGDAVLGFIVTARLLCLFPDA 360
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGW 1272
S G L +++ V N+ GL + +++ + K
Sbjct: 361 SVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLVAK-------------------- 400
Query: 1273 ESVTSFPKALGDIIESLAGAIFVDSG---CNREVVFQSIRPLLEPMITPETMRFHPVREL 1329
K D+ E + G+IF E + +++ T + V +
Sbjct: 401 ------SKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEH-SKTVGSACPDAVTKA 453
Query: 1330 TEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHT-FLDADKKTAKKVACKEV 1385
++ + + +V + + E + A+ +
Sbjct: 454 SKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQF 513
Query: 1386 LKSLRASFPGT 1396
S PG
Sbjct: 514 SHRSGLSGPGG 524
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-26
Identities = 67/375 (17%), Positives = 118/375 (31%), Gaps = 79/375 (21%)
Query: 828 PLCTCKIHNSLVCTPH-NGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLC 886
+ +H +V TP + +Y + G+ + S FTR N S+T Y ++Y + I L
Sbjct: 150 STLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESIT-YMRYYATAHNIHLR 208
Query: 887 FDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFV 946
PL+ R+ ++++ K+ F LPPELC ++ L + F+
Sbjct: 209 AADLPLVAAVRLDDLKDHQIPAPGSWDDLAPKLRF-LPPELCLLLPDEFDLIRVQALQFL 267
Query: 947 PSIMHRLQSLLLAVNLKNMLLDHC-------MQNVTIPTIKVLE----------AITTKK 989
P I + + + + C +T
Sbjct: 268 PEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFG 327
Query: 990 CQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKL 1049
+ LE LGD+ L + + +L + + G L K ++ N AL L L
Sbjct: 328 VSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGL 387
Query: 1050 PGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA 1109
P + N KSKT AD+ E ++G+
Sbjct: 388 PQLAEFSN------------------------NLVA---------KSKTWADMYEEIVGS 414
Query: 1110 FLSTGGENVGLIFLDRIGIKV--DFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDP-S 1166
IF GI +F+ + + + + D +
Sbjct: 415 -----------IFTGPNGIYGCEEFL------------AKTLMSPEHSKTVGSACPDAVT 451
Query: 1167 LLVEALTHGSYMLPE 1181
+ + G E
Sbjct: 452 KASKRVCMGEAGAHE 466
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 34/180 (18%)
Query: 1136 PYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDA 1195
+ A+ + + LL ALT Y Q+LE LGDA
Sbjct: 606 SSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHVY---------QKLELLGDA 656
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN 1255
L + ++L+ +P L+ G LT MR ++ N L + +
Sbjct: 657 FLKCSLALHLHALHPTLTEGALTRMRQSAETNS--VLGRLTKRFPSVVS-----EVI--- 706
Query: 1256 ITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCN--REVVFQSIRPLLE 1313
E K GD E++ AI + G V + + P +
Sbjct: 707 -----IESHPKIQP--------DSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQVV 753
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-07
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 31/136 (22%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+FLK + + L + EG L+ ++ +N+ L +L ++ P +
Sbjct: 648 QKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLT--KRFPSVVS-- 703
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTGG 1115
+ ++ + SK D EA++ A L+ G
Sbjct: 704 -------EVIIESHP----------KIQP---------DSKVYGDTFEAILAAILLACGE 737
Query: 1116 ENVGLIFLDRIGIKVD 1131
E G + + +V
Sbjct: 738 EAAGAFVREHVLPQVV 753
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-24
Identities = 87/491 (17%), Positives = 153/491 (31%), Gaps = 131/491 (26%)
Query: 2 EPVSMESDTTEEVSADTLPFA---RNYQLEALENALKQNT-IVFLETGSGKTLIAIMLLR 57
+ + + + R+YQ +ALE L + L TGSGKT +A+ +
Sbjct: 71 NGIEFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN 130
Query: 58 SYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117
L P + +VP + L Q E + + + VG++ G
Sbjct: 131 ----ELSTP----TLIVVPTLALAEQWKERLGIFGEEYVGEFSGR-------------IK 169
Query: 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD 177
+ V T + N +LI DE HH + E Y ++ +
Sbjct: 170 ELKPLTVSTYDSAY---VNAEKLGNRFMLLIFDEVHH---------LPAESYVQIAQMSI 217
Query: 178 SNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKF 237
+ P G+TA+ + + L+ ++ KV
Sbjct: 218 A--PFRLGLTATFERE---------DGRHEILKEVVGGKV-------------------- 246
Query: 238 KFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLS 297
+ D LA L A+ + R
Sbjct: 247 ------------FELFPDSLAGKHL-------------AKYTIKR--------------- 266
Query: 298 ELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGD 357
+++ L E + + + + L G T+ + + Y E
Sbjct: 267 ---IFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAW 323
Query: 358 DSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTW 417
+ + KI L E L +R + IIF + +
Sbjct: 324 EEARRIAFNS-KNKIRKLREILERHRKD---KIIIFTRHNELVYRISKVF---------- 369
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477
I SR+++ EI+E FR G IV++ +L+EG+DV N+ ++ S
Sbjct: 370 LIPAITHR------TSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG 423
Query: 478 TVCSFIQSRGR 488
+ +IQ GR
Sbjct: 424 SAREYIQRLGR 434
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 5e-19
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 830 CTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDR 889
CT + ++V T +N + Y I V + FT ++G T+ ++Y + YGI + +
Sbjct: 24 CTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEED 83
Query: 890 EPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSI 949
+PLL R RQ K L PEL M I F + +
Sbjct: 84 QPLLIHR---------PSERQDNHGMLLKGEILLLPELSF--MTGIPEKMKKDFRAMKDL 132
Query: 950 MHRLQS 955
++
Sbjct: 133 AQQINL 138
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 4e-18
Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 830 CTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDR 889
+ ++ +V T +N + Y + + N S F + +GS ++ ++Y ++Y ++ +
Sbjct: 25 VSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLK 84
Query: 890 EPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSI 949
+P+L + R++ L PELC + ++ F + +
Sbjct: 85 QPVLVSQ----------PKRRRGPGGTLPGPAMLIPELCY--LTGLTDKMRNDFNVMKDL 132
Query: 950 MHRLQ 954
+
Sbjct: 133 AVHTR 137
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 5e-18
Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 830 CTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDR 889
+ ++ +V T +N + Y + + N S F + +GS ++ ++Y ++Y ++ +
Sbjct: 24 VSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLK 83
Query: 890 EPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRI 930
+P+L + R++ L PELC +
Sbjct: 84 QPMLVSQP----------KRRRGPGGTLPGPAMLIPELCYL 114
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 39/187 (20%)
Query: 9 DTTEEVSADTLPFA---RNYQLEALENALKQNT-IVFLETGSGKTLIAIMLLRSYAYLLR 64
+ + + R+YQ +ALE L + L TGSGKT +A+ + L
Sbjct: 78 NAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----LS 133
Query: 65 KPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLV 124
P + +VP + L Q E + + + VG++ G + V
Sbjct: 134 TP----TLIVVPTLALAEQWKERLGIFGEEYVGEFSGR-------------IKELKPLTV 176
Query: 125 MTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIF 184
T + N +LI DE HH + E Y ++ + + P
Sbjct: 177 STYDSA---YVNAEKLGNRFMLLIFDEVHH---------LPAESYVQIAQMSIA--PFRL 222
Query: 185 GMTASPI 191
G+TA+
Sbjct: 223 GLTATFE 229
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 3e-13
Identities = 82/526 (15%), Positives = 180/526 (34%), Gaps = 64/526 (12%)
Query: 23 RNYQLEALENALKQNTIVFL---ETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVV 79
+QL + +++ L E G GKT+ A M+L LL + V + +VP+
Sbjct: 155 IPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILH--QQLLSGAAERVLI-IVPET- 210
Query: 80 LVPQ-QAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL---DGLR 135
L Q E ++ ++ +D + E T Q+++ D R
Sbjct: 211 LQHQWLVEMLR----------RFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFAR 260
Query: 136 LSYFKLNMIK-----VLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
S +L + +L++DE HH + Y + +E ++P + +TA+P
Sbjct: 261 RSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP---SREY-QAIEQLAEHVPGVLLLTATP 316
Query: 191 IKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS--NFIPFSTAKFKFYKYDEIPHA 248
+ ++ L++ + ++ V N+ P + A +++ +
Sbjct: 317 ----EQLGMESHF----ARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSND 368
Query: 249 LYTHLADELAMIELKHTRSLENLDLNEAQA---ELIRKKVSKINSTLLYCLSELGVWLAL 305
L + + +++ N D +AQ+ EL+ + + ++ + +
Sbjct: 369 ELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGF 428
Query: 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS 365
E + ++ + + ++ + Y + GD++ +
Sbjct: 429 PKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFD 488
Query: 366 GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGN 425
+ L+ L +R + ++ + T L ++L +
Sbjct: 489 PRVEW----LMGYLTSHRSQ---KVLVICAKAAT----ALQLEQVLREREGIRAAVFHEG 537
Query: 426 NSGIQCQSRKKQNEIVEEFRR--GLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFI 483
S +++ F V++ + I EG + Q + ++MFD
Sbjct: 538 ------MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591
Query: 484 QSRGRA-RM-QNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLS 527
Q GR R+ Q D + V + T QS L + G +
Sbjct: 592 QRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 1e-12
Identities = 106/682 (15%), Positives = 210/682 (30%), Gaps = 194/682 (28%)
Query: 153 HHA---RGKHQYAC--IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSS---SEQDYWQ 204
HH G+HQY I++ F ++ + + + M S + + +D
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 205 KIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKH 264
L + SK E ++ F YK+ L + + E +
Sbjct: 63 GTLRLFWTLLSK-----QEEMVQKF--VEEVLRINYKF------LMSPIKTEQRQPSMMT 109
Query: 265 TRSLENLD--LNEAQAELIRKKVSKINSTLLYCLSELGVWL-ALKAAETISCYESDFFAW 321
+E D N+ Q +K N + L +L L L+ A+ +
Sbjct: 110 RMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPAKNVLID------- 156
Query: 322 EQLDGFGETIIKKFGSDASQALVTYV-----PSGAEW-SIGDDSKFNLDSGLLTEKIVCL 375
+ G G+T + A ++Y W ++ + +
Sbjct: 157 -GVLGSGKTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNS--------------- 194
Query: 376 IESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRK 435
E++LE +LQ LL ++ P + S +
Sbjct: 195 PETVLE--------------------MLQKLLYQIDPNWT---------SRSDHSSNIKL 225
Query: 436 KQNEIVEEFRRGLVNVIVATS--ILEEGLDVQSCNLVIMFDPS-RTVCSFIQSRGRARMQ 492
+ + I E RR L + +L +VQ+ F+ S + + + +R + Q
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSCKIL---LTTRFK---Q 276
Query: 493 NSDYL--------LMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGE- 543
+D+L + + T +++ L R + L L +P + E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 544 --------DFY-HVESTGTIATLSSSVSLI--------YFYCSRLPSDGYFKPTPKFHIN 586
D + HV + SS++++ + S P HI
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--------AHI- 387
Query: 587 KEMGICTL--YLPNNCPIQTVIAQGNIKTLKQAACLEACKK-----LHQIGALTDNLLPD 639
+ + + + + + V L + + +E K + I L + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV------NKLHKYSLVEKQPKESTISIPSI-YLELKVKLE 440
Query: 640 IVVEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQD----TKITYHCYLIELKQHFNYDIS 695
H + + YN P F + + D + I +H IE +
Sbjct: 441 NEYALH---RSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT---L 492
Query: 696 ARNIVLAMRTELESEIKKVNF-------------DLEVERGRLTVNLKHLGR-----IQL 737
R + L R LE +I+ + L+ + + N R +
Sbjct: 493 FRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 738 IPN--QVLLCRRF----QITLF 753
+P + L+C ++ +I L
Sbjct: 552 LPKIEENLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 107/649 (16%), Positives = 196/649 (30%), Gaps = 177/649 (27%)
Query: 688 QHFNYDISA-----RNIVLAMRTELESEIKKVNFD----LEVERGRLT-VNLKHLGRIQL 737
H +++ ++I+ E NFD ++ + L+ + H I +
Sbjct: 5 HHMDFETGEHQYQYKDILSV----FEDAFVD-NFDCKDVQDMPKSILSKEEIDH---IIM 56
Query: 738 IPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVA 797
+ V R LF + L K E++ F + + L I+Y L S KT
Sbjct: 57 SKDAVSGTLR----LFWTL----LSKQEEMVQKF-VEEVLRINYKFLMSP-----IKTEQ 102
Query: 798 TVLFPRDNGSKHNMNCSTMFNARIVHTK---SGPLCTCKIHNSLV-CTPHNGQIYCITGV 853
P + ++N V K S K+ +L+ P + I GV
Sbjct: 103 RQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGV 158
Query: 854 LGH----LNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCR 909
LG + + + Y +Q D + IF + L C
Sbjct: 159 LGSGKTWVALDVC--LS--------------YKVQCKMDFK-------IFWLN--LKNCN 193
Query: 910 QQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTF---VPSIMHRLQSLLLAVNLKNML 966
P + E+ +L I + + +S + SI L+ LL + +N L
Sbjct: 194 -----SPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 967 LDHCMQNVTIPTI--------KVLEAITTK-KCQEDF-------HLESLETLGDSFLKYA 1010
L + NV K+L +TT+ K DF H+ SL+ +
Sbjct: 248 LV--LLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHI-SLDHHSMTLTP-D 301
Query: 1011 ASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESF-----DPKMWII 1065
+ L Y + L + N + E G +++ D II
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 1066 --------PGDNSGSYE----LNDDSLFNGRKI--YVTGR--KKVKSKTVADVVEALIGA 1109
P + ++ + I + V V VV L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 1110 FLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLV 1169
L I + I ++ V + ++ +H +V+ H + D
Sbjct: 415 SLVEKQPKESTISIP--SIYLEL-KVKLENEYALHR-SIVD--HYNIPKTFDSDDLIPPY 468
Query: 1170 E---ALTHGSYMLPEI---------PRCYQRLEFLG-------------DAVLDYLITVY 1204
+H + L I + FL ++L+ L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 1205 LYNKYPGLSPGYLTDMRSASVNNDCYA--LSSVKHGLHK---HILHASH 1248
Y Y+ D N+ Y ++++ L K +++ + +
Sbjct: 529 FYKP-------YICD------NDPKYERLVNAILDFLPKIEENLICSKY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 87/504 (17%), Positives = 143/504 (28%), Gaps = 150/504 (29%)
Query: 1 MEPVSMES-----DTTEEVSA------DTLPFA-----RNYQLEALENALKQ---NTIVF 41
M P+ E T + D FA R L AL + V
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 42 LE--TGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-------PKVVLVPQQ-------- 84
++ GSGKT +A+ + SY + +F + P+ VL Q
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 85 --------AEAIKMHTD---------LKVGKYWGDMGV--DFWDGATWK--EEMSKHEVL 123
+ IK+ LK Y + V + + W K +L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--IL 269
Query: 124 VMTPQI----LLDGLRLSYFKLN-MIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
+ T L ++ L+ L DE + + L+
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-------------VKSLLLKYLDCRPQ 316
Query: 179 NLPR--------IFGMTASPIKSKVSSSEQDYWQKIH--DLETLMNSKVYTCASESVLSN 228
+LPR + A I+ +++ D W+ ++ L T++ S +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 229 FIPFSTAKFKFYKYDEIPHALYTHL------ADELAMIELKHTRSLEN------------ 270
F S F IP L + + +D + ++ H SL
Sbjct: 375 FDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 271 --LDL---NEAQAELIRKKVSKINSTLLYCLSEL------GVW---LA--LKAAETISCY 314
L+L E + L R V N + +L + + LK E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-- 488
Query: 315 ESDFFAWEQLD-GFGETIIKKFGSDASQALVTYVPSGAEWSIGDD-------SKFNLDSG 366
F LD F E I+ + A SI + + D+
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDST----------AWNASGSILNTLQQLKFYKPYICDND 538
Query: 367 LLTEKIVCLIESLLEYRGVEDIRC 390
E++V I L I
Sbjct: 539 PKYERLVNAILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 5e-10
Identities = 92/601 (15%), Positives = 178/601 (29%), Gaps = 178/601 (29%)
Query: 642 VEKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNI-- 699
+E+ D N+ F V++ K+ L+EL+ A+N+
Sbjct: 113 IEQRDRLYNDNQV--------FAKYNVSRLQPYLKLRQA--LLELR-------PAKNVLI 155
Query: 700 ---------VLAMRTELESEIKKVNFDLEVERGRLTVNLKHLGRIQLIPNQVL-LCRRFQ 749
+A+ L +++ D ++ +NLK+ + + + L +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQC-KMDFKI----FWLNLKNCNSPETVLEMLQKLLYQ-- 208
Query: 750 ITLFRVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKH 809
+D N ++ +LR + L +L+ K L N
Sbjct: 209 -------IDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQ-- 254
Query: 810 NMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGS 869
N FN CKI L+ T Q+ + L + +
Sbjct: 255 NAKAWNAFNLS-----------CKI---LLTT-RFKQV-----------TDFL----SAA 284
Query: 870 VTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCR 929
TT+ + + + L K + +LP E+
Sbjct: 285 TTTHISLDHHSMT----LTPDEVKS---------LLLKYLDCR-------PQDLPREVLT 324
Query: 930 IIMAPISLSTF-------------YSFTFVPSIMHRLQSLLLAVN---LKNMLLDHCM-- 971
P LS + + ++S L + + M +
Sbjct: 325 T--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 972 QNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKK 1031
+ IPT +L I + D + + + KY+ ++ K + + K
Sbjct: 383 PSAHIPT-ILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 1032 ERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSY----------ELND-DSL 1080
++ + AL + + + ++FD I P + Y E + +L
Sbjct: 437 VKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 1081 FNGRKIYVTGR---KKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPY 1137
F R +++ R +K++ + A I L Y
Sbjct: 493 F--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ------------------QLKF--Y 530
Query: 1138 QRQFQVHA---ERLVN------VRHLESLLNYSFRDPSLLVEALTH-GSYMLPEIPRCYQ 1187
+ + ERLVN + E+L+ + D LL AL + E + Q
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAIFEEAHKQVQ 588
Query: 1188 R 1188
R
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 113/717 (15%), Positives = 214/717 (29%), Gaps = 206/717 (28%)
Query: 6 MESDTTEE--VSADTLP-----FARNYQLEALENALKQ-------NTIVFLETGSGKTLI 51
M+ +T E D L F N+ + +++ K + I+ S +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVS 62
Query: 52 AIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ---AEAIKMHTDLKVGKYWGDMGVDFW 108
+ L + LL K V F+ + VL IK
Sbjct: 63 GTLRL--FWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMT--------- 109
Query: 109 DGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEF 168
+ + + + L Q+ + K N+ +R + +
Sbjct: 110 -----RMYIEQRDRLYNDNQV--------FAKYNV-----------SRLQP-----YLKL 140
Query: 169 YHRLLETGDSNLPRIFGMTASPIKSK-VSSSEQDYWQKIHDLETLMNSKVY-----TCAS 222
LLE + I G+ S K+ Y ++ M+ K++ C S
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSY-----KVQCKMDFKIFWLNLKNCNS 194
Query: 223 -ESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELI 281
E+VL E+ L + H+ +++ L ++ QAEL
Sbjct: 195 PETVL-----------------EMLQKLLYQIDPNWT-SRSDHSSNIK-LRIHSIQAELR 235
Query: 282 RKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII---KKFGSD 338
R SK L L V + AW + + ++ K +D
Sbjct: 236 RLLKSKPYENCLLVLLN--VQ--------------NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 339 ASQALVTYVPSGAEWSIG---DDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE 395
A T S S+ D+ K LL + + C + L E
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLDCRPQDLPR-------------E 321
Query: 396 RVITAIVLQSLLSELLPRH-CTWKT-KYIAGNNSGIQCQSRKKQNEIVE---------EF 444
+ T S+++E + TW K++ + K I+E E+
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEY 371
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIM-FDPSRTVCSFIQSRGRARMQNSDYLLMVKSG 503
R+ + S+ + + L ++ FD ++ + + + Y L+ K
Sbjct: 372 RKMFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN------KLHKYSLVEKQP 421
Query: 504 DSTTQSRLENYLASGNKMRKEVLSHASL-------------PCSPLNNHMYGEDF--YHV 548
+T S YL K+ E H S+ P Y +H+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 549 ESTGTIATLSSSVSLIY----FYCSRLPSDGYFKPTPKFHINKEMGICTL--------YL 596
++ + +++ F ++ D +N TL Y+
Sbjct: 482 KNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------TLQQLKFYKPYI 534
Query: 597 PNNCPIQTVIAQGNIKTLKQAA--CLEA-CKKLHQIGALTDNLLPDIVVEKHDAQKR 650
+N P + + L + + + L +I + ++ I E H +R
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-04
Identities = 55/417 (13%), Positives = 115/417 (27%), Gaps = 140/417 (33%)
Query: 957 LLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKC----QEDFHLESLETLGDSFLKYAAS 1012
+L+V + + ++V +L + ++ + L + L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 1013 Q-QLF--KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDN 1069
Q F + + N++ L+S I+TE P M
Sbjct: 78 MVQKFVEEVLRINYKFLMSP-----------------------IKTEQRQPSM------M 108
Query: 1070 SGSYELNDDSLFNG----RKIYVTGRKKVK-----------SKTVADVVEALIGAFLSTG 1114
+ Y D L+N K V+ + +K V +++ ++G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGS----- 161
Query: 1115 GENVGLI--------FLDRIGIKVDFVNVPYQRQFQVHAERLVNVRH-----LESLLNYS 1161
G+ + ++ K+ ++N+ + E L + + S ++S
Sbjct: 162 GKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 1162 FRDPSLLVEALTHGSYML--PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTD 1219
+ +L C L VL +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL--L------VLL--------------------N 252
Query: 1220 MRSASV----NNDCYAL-----SSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTF 1270
+++A N C L V L A+ + ++ +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQV-----TDFLSAATTTHISLDHHSMTLTPD------ 301
Query: 1271 GWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR 1327
E + K L + L REV+ + P +I E++R
Sbjct: 302 --EVKSLLLKYLDCRPQDLP----------REVL--TTNPRRLSII-AESIRDGLAT 343
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 26 QLEALENALK--QNTIVFLETGSGKTLIAIML-LRSYAYLLRKPSPFVAVFLVPKVVLVP 82
Q EA++ L ++ TGSGKTLIA M + K A+++ P L
Sbjct: 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGK-----AIYVTPLRALTN 89
Query: 83 QQAEAIK--MHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGL-RLSYF 139
++ K KV GD D + +++++ T + LD L R
Sbjct: 90 EKYLTFKDWELIGFKVAMTSGDYDTD-------DAWLKNYDIIITTYEK-LDSLWRHRPE 141
Query: 140 KLNMIKVLILDECH 153
LN + +LDE H
Sbjct: 142 WLNEVNYFVLDELH 155
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 26 QLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83
Q EAL++ + + N ++ + T SGKTLIA + + L + AV++VP L +
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIA-EIAMVHRILTQG---GKAVYIVPLKALAEE 83
Query: 84 QAEAIK--MHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
+ + + L+V GD E + K+++++ T + LR +
Sbjct: 84 KFQEFQDWEKIGLRVAMATGDYDSK-------DEWLGKYDIIIATAEKFDSLLRHGSSWI 136
Query: 142 NMIKVLILDECH 153
+K+L+ DE H
Sbjct: 137 KDVKILVADEIH 148
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 26 QLEALENALK-QNTIVFLETGSGKTLIAIML-LRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83
Q EA+E +N ++ + T +GKTL+A M +R ++ ++++VP L +
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE---AIKG---GKSLYVVPLRALAGE 83
Query: 84 QAEAIK--MHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
+ E+ K L++G GD E + +++V T + +R +
Sbjct: 84 KYESFKKWEKIGLRIGISTGDYESR-------DEHLGDCDIIVTTSEKADSLIRNRASWI 136
Query: 142 NMIKVLILDECH 153
+ L++DE H
Sbjct: 137 KAVSCLVVDEIH 148
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
+K L++ L +D ++FVE A L+ L + G
Sbjct: 31 DKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLY-----------------HEGY 71
Query: 430 QCQS---RKKQNE---IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
C S + Q + + +FR G ++VAT++ GLD+ + VI FD
Sbjct: 72 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 122
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
EK L + LL+ + +IFV+ V I L LL E + I
Sbjct: 17 EKNRKLFD-LLDVLEFN--QVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRG---- 64
Query: 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
++++ ++F+ ++VAT++ G+D++ N+ +D
Sbjct: 65 --MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 107
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 357 DDSKFN---LDSGLLTEKIVCLI-ESLLEY--RGVEDIRCIIFVERVITAIVLQSLLSEL 410
D ++ + + + + L ++ R + I+F A ++ L+ L
Sbjct: 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNL 462
Query: 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLV 470
Y+A S + + K +E ++ + +L G+D +C V
Sbjct: 463 NSDLSRKHPDYVARVTSE-EGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNV 521
Query: 471 IMFDP--SRTVCSFIQSRGRA 489
++ S + F Q GR
Sbjct: 522 VLARVVNSMSE--FKQIVGRG 540
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 38/184 (20%)
Query: 23 RNYQLEALENAL------KQNTIVFLETGSGKTLIAI----MLLRSYAYLLRKPSPFVAV 72
R YQ A+ A+ K+ +++ + TG+GKT++A L + +
Sbjct: 180 RYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRIL 239
Query: 73 FLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLD 132
FL + VLV D + + E+ Q +
Sbjct: 240 FLADRNVLV-DDP----KDKTFTPFG-------DARHKIEGGKVVKSREIYFAIYQSIAS 287
Query: 133 GLRLSYFKLNMIK----VLILDECHH--ARGKHQYACIMTEFYHRLLETGDSNLPRIFGM 186
R + ++I+DECH AR + I+ F GM
Sbjct: 288 DERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQ----------IGM 337
Query: 187 TASP 190
TA+P
Sbjct: 338 TATP 341
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
+K L++ L +D ++FVE A L+ L + G
Sbjct: 261 DKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLY-----------------HEGY 301
Query: 430 QCQS---RKKQNE---IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
C S + Q + + +FR G ++VAT++ GLD+ + VI FD
Sbjct: 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 352
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 27/111 (24%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
K+V L+E L + +IF E+ + L G+
Sbjct: 41 AKMVYLLECLQKTPP----PVLIFAEKKADVDAIHEYLL-----------------LKGV 79
Query: 430 QCQS---RKKQNE---IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
+ + K Q E +E FR G +V+VAT + +GLD + VI +D
Sbjct: 80 EAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYD 130
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 43 ETGSGKTL-IAIMLLRSYAYLLRKPSPFVAVFLVPKVVL---VPQQAEAIKMHTDLKVGK 98
ETGSGKT A+ +L + LL P A+ L P L + +Q EA+ ++
Sbjct: 88 ETGSGKTGAFALPILNA---LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144
Query: 99 YWGDMGVDFWDGATWKEEMSKH-EVLVMTPQILLDGLRLS-YFKLNMIKVLILDE 151
G G+D + ++K +++ TP L+D L + F L +K L++DE
Sbjct: 145 IVG--GIDS---MSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 44 TGSGKTL-IAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM--HTDLKVGKYW 100
TG GKT + L +L RK + + P V LV Q E ++ +K+ ++
Sbjct: 45 TGVGKTTFGMMTAL----WLARKGKK--SALVFPTVTLVKQTLERLQKLADEKVKIFGFY 98
Query: 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
M + + E + +LV + Q + + +D+
Sbjct: 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK--NREKLSQKRFDFVFVDD 147
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG 428
K LIE L E I+FVE A L S LS
Sbjct: 286 YAKRSKLIEILSEQAD----GTIVFVETKRGADFLASFLS-----------------EKE 324
Query: 429 IQCQS---RKKQNE---IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
S + Q++ + +F+ G + V++ATS+ GLD+++ VI +D
Sbjct: 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Length = 282 | Back alignment and structure |
|---|
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 22/173 (12%)
Query: 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
YQ +A+ L I+ L T +G++LI +L R Y + +VP L
Sbjct: 115 HWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKI----LIIVPTTALT 170
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
Q A+ + L +G + + V+V T Q ++ +
Sbjct: 171 TQMADDFVDYR-LFSHAMIKKIGGGASKDDKY---KNDAPVVVGTWQTVV---KQPKEWF 223
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194
+ +++ DECH A GK + I++ +N FG++ S K
Sbjct: 224 SQFGMMMNDECHLATGK-SISSIISGL---------NNCMFKFGLSGSLRDGK 266
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 43 ETGSGKTL-IAI-MLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ---QAEAIKMHTDLKVG 97
+TGSGKTL + +L Y + + P L Q + + D G
Sbjct: 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAG 129
Query: 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY-FKLNMIKVLILDE 151
G G D A E ++ +LV TP LL + + F +++L+LDE
Sbjct: 130 LIIG--GKDLKHEA---ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
+++ I++ FR G V++ T++ G+DV+ +V+ FD
Sbjct: 71 EQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFD 110
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
K++ I++EFR G V+++T + GLDV +L+I +D
Sbjct: 313 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 352
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 390 CIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV 449
+IF L + L + I + +++++ I++EFR G
Sbjct: 33 AVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSD------LPQQERDTIMKEFRSGSS 81
Query: 450 NVIVATSILEEGLDVQSCNLVIMFD 474
++++T +L G+DVQ +LVI +D
Sbjct: 82 RILISTDLLARGIDVQQVSLVINYD 106
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
K+++ I+ EFR G V++ T +L G+DVQ +LVI +D
Sbjct: 317 KERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 356
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
++++ I++EFR G ++++T +L G+DVQ +LVI +D
Sbjct: 296 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
+++N++ EFR+G V +V + +L G+D+Q+ N+VI FD
Sbjct: 295 QERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 334
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 438 NEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
++E FR G V+V T++ G+DV+ ++VI FD
Sbjct: 373 AAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 409
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 370 EKIVCLIESLLEYRGVEDI-RCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIA-GNNS 427
EK L + LL+ V + + +IFV+ V I L LL E + A +
Sbjct: 236 EKNRKLFD-LLD---VLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHR 282
Query: 428 GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
G+ + R ++F+ ++VAT++ G+D++ N+ +D
Sbjct: 283 GMPQEER---LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 438 NEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
++E FR G V+V T++ G+DV+ ++VI FD
Sbjct: 306 AAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 29/164 (17%)
Query: 31 ENALKQNTIVFL--ETGSGKT--LIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE 86
+ LK+ L G+GKT + +L LR V L P V+
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLR-----TLV-LAPTRVV----LS 51
Query: 87 AIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKV 146
+ + + + V F A + + M L L ++ +V
Sbjct: 52 E--------MKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTY-RMLEPTRVVNWEV 102
Query: 147 LILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
+I+DE H A I +N MTA+P
Sbjct: 103 IIMDEAHF----LDPASIA--ARGWAAHRARANESATILMTATP 140
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 18/119 (15%)
Query: 43 ETGSGKTL-IAI-MLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ---QAEAIKMHTDLKVG 97
+TGSGKTL I + + + L P L Q + + H G
Sbjct: 99 KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYG 158
Query: 98 KYWGDMGVDFWDGATWKEEMSKH----EVLVMTPQILLDGLRLS-YFKLNMIKVLILDE 151
G G+ E K ++V TP LLD ++ + F ++ L++DE
Sbjct: 159 LIMG--------GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 435 KKQNE---IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
Q + ++ EF+RG +VAT + G+D+++ +LVI +D
Sbjct: 69 MIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 111
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1396 | ||||
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 2e-20 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 1e-18 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-15 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 2e-14 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 6e-08 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 6e-13 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 7e-09 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 4e-08 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 6e-08 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-07 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 7e-07 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 9e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 3e-06 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 6e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-05 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-05 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 8e-05 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 8e-05 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 1e-04 | |
| d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stra | 1e-04 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-04 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 4e-04 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 4e-04 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 6e-04 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.001 | |
| d1di2a_ | 69 | d.50.1.1 (A:) Double-stranded RNA-binding protein | 0.002 | |
| d2cpna1 | 76 | d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu | 0.003 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 0.004 | |
| d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros | 0.004 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 86.8 bits (214), Expect = 2e-20
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 30/163 (18%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 5 LEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNKR 61
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWE 1273
G+L+ +++ ++ + + L + K LHK I ++ + I
Sbjct: 62 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII------------------ 103
Query: 1274 SVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
GD+ E+L A+++DSG + + L + I
Sbjct: 104 ---------GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 137
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 82.6 bits (203), Expect = 1e-18
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 29/187 (15%)
Query: 1142 QVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSY------MLPEIPRCYQRLEFLGDA 1195
++ V + +F++ LL AL H SY + ++LEFLGDA
Sbjct: 2 HMNESERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDA 61
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN 1255
VL+ + LY KYP G L ++SA+ + + A+ S K L K + E
Sbjct: 62 VLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGR 121
Query: 1256 ITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCN--REVVFQSIRPLLE 1313
L D E+L AI++D G +E+ Q +E
Sbjct: 122 D---------------------RDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIE 160
Query: 1314 PMITPET 1320
++ E
Sbjct: 161 KIMKGEM 167
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.4 bits (181), Expect = 2e-15
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82
R YQ + N ++ L TG GKTLIA+M Y L K V + L P LV
Sbjct: 11 RIYQEVIYAKCKETNCLIVLPTGLGKTLIAMM---IAEYRLTKYGGKV-LMLAPTKPLVL 66
Query: 83 QQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN 142
Q AE+ + +L + ++ +V+V TPQ + + L L
Sbjct: 67 QHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 143 MIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
+ +++ DE H A G + Y I E+ + + P + G+TASP + E
Sbjct: 125 DVSLIVFDEAHRAVGNYAYVFIAREYKRQ------AKNPLVIGLTASPGSTPEKIME 175
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 68.9 bits (168), Expect = 2e-14
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 1188 RLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHAS 1247
L ++GDAV + I +L K + P L + ++ V+ A +
Sbjct: 10 ALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEE 68
Query: 1248 HELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNR--EVVF 1305
+ +R + S ++ E+L G + + R E+V+
Sbjct: 69 EAVLRRGR---------NANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVY 119
Query: 1306 QSIRPLLE 1313
++I L E
Sbjct: 120 KAIAVLEE 127
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 50.7 bits (121), Expect = 6e-08
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 17/130 (13%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+L +GD+ + L + + L +S A K+ F+ E
Sbjct: 9 LALAYMGDAVYEQYIRYHLLQKGKVR-PNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEE 67
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116
+ + G N+ S + ++ V++ + EALIG
Sbjct: 68 ---EEAVLRRGRNANSGTVPKNT-------------DVQTYRHSTAFEALIGYHHLLNNR 111
Query: 1117 NVGLIFLDRI 1126
+ +
Sbjct: 112 ERLDEIVYKA 121
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 68.8 bits (167), Expect = 6e-13
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
+K+ +I L+ + ++ + I+F TA + + L K K G S
Sbjct: 146 DKLKEIIREQLQRK--QNSKIIVFTNYRETAKKIVNEL-----VKDGIKAKRFVGQASKE 198
Query: 430 --QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487
+ S+++Q I++EF RG NV+VATS+ EEGLDV +LV+ ++P + IQ RG
Sbjct: 199 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 258
Query: 488 RA-RMQNSDYLLMVKSGD 504
R R ++++ G
Sbjct: 259 RTGRHMPGRVIILMAKGT 276
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 56.4 bits (135), Expect = 7e-09
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 22/174 (12%)
Query: 23 RNYQLEALENALKQNTIVF-LETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
YQ +A+ L + L T +G++LI +L R Y + +VP L
Sbjct: 115 HWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE----NYEGKILIIVPTTALT 170
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
Q A+ + + G ++ + ++
Sbjct: 171 TQMADDFVDY-------RLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWF 223
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKV 195
+ +++ DECH A GK + I++ + FG++ S K
Sbjct: 224 SQFGMMMNDECHLATGK-SISSIISGLNNC---------MFKFGLSGSLRDGKA 267
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 54.2 bits (129), Expect = 4e-08
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 31 ENALKQNTIVFL--ETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88
++ ++ + + G+GKT + + K + L P V+ + EA+
Sbjct: 3 DDIFRKKRLTIMDLHPGAGKTKRYLPAI---VREAIKRGLRTLI-LAPTRVVAAEMEEAL 58
Query: 89 KMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLI 148
+ +Y G + +M LS ++ ++I
Sbjct: 59 RGLP----IRYQTPAIRAEHTGREIVD--------LMCHATFTM-RLLSPIRVPNYNLII 105
Query: 149 LDECHH 154
+DE H
Sbjct: 106 MDEAHF 111
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.6 bits (125), Expect = 6e-08
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 36/169 (21%)
Query: 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R+YQ +ALE L + L TGSGKT +A+ + + + +VP + L
Sbjct: 72 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELST--------PTLIVVPTLALA 123
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
Q E + + + VG++ G +S ++ + + L + L
Sbjct: 124 EQWKERLGIFGEEYVGEFSG------RIKELKPLTVSTYDSAYVNAEKLGNRFML----- 172
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
LI DE HH + Y ++ + + P G+TA+
Sbjct: 173 -----LIFDEVHHLPAES---------YVQIAQMSIA--PFRLGLTATF 205
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 21/155 (13%), Positives = 35/155 (22%), Gaps = 27/155 (17%)
Query: 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLK 95
Q + TGSGK+ + Y + L P V + +
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGY--------KVLVLNPSVAATLGFGAYMSKAHGVD 60
Query: 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHA 155
G + T+ ++I DECH
Sbjct: 61 PNIRTGVRTITTGSPITYSTYGKFLADG--------------GCSGGAYDIIICDECHST 106
Query: 156 RGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
L + + + TA+P
Sbjct: 107 DATSILG-----IGTVLDQAETAGARLVVLATATP 136
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 49.3 bits (117), Expect = 7e-07
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 26 QLEALENAL--KQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83
Q++ + L + N + TGSGKT + L + + V
Sbjct: 31 QMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVAD 90
Query: 84 QAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNM 143
+ E++K + +LK+ K +G + + + ++V TP +LD + L
Sbjct: 91 EIESLKGNKNLKIAKIYGGKAIY-----PQIKALKNANIVVGTPGRILDHINRGTLNLKN 145
Query: 144 IKVLILDECHH 154
+K ILDE
Sbjct: 146 VKYFILDEADE 156
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 14/167 (8%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
Q EA+E +N ++ + T +GKTL+ + ++ ++VP L
Sbjct: 27 FPPQAEAVEKVFSGKNLLLAMPTAAGKTLL--AEMAMVREAIKGGKSL---YVVPLRALA 81
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
++ E+ K K K +G+ D + E + +++V T + +R +
Sbjct: 82 GEKYESFK-----KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWI 136
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
+ L++DE H + + + ++ + R+ G++A
Sbjct: 137 KAVSCLVVDEIHLLDSEKRG-ATLEILVTKMRRMNKA--LRVIGLSA 180
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 23/156 (14%)
Query: 35 KQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94
T++ G+GKT + + + R + A
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV----------------LAPTRVVLS 50
Query: 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH 154
++ + + + V F A + + M L + +N +V+I+DE H
Sbjct: 51 EMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVN-WEVIIMDEAHF 109
Query: 155 ARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
A +N MTA+P
Sbjct: 110 -LDPASIA-----ARGWAAHRARANESATILMTATP 139
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.2 bits (112), Expect = 6e-06
Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 12/130 (9%)
Query: 367 LLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNN 426
L T + + ++ R +IF L + L L
Sbjct: 16 LSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVAL-----GINAVAYYRGL 70
Query: 427 S----GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG---LDVQSCNLVIMFDPSRTV 479
+ + G + ++ + + + +
Sbjct: 71 DVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA 130
Query: 480 CSFIQSRGRA 489
S Q RGR
Sbjct: 131 VSRTQRRGRT 140
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.4 bits (109), Expect = 1e-05
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R Q + L+ ++ TG GKT + + L + P +LV
Sbjct: 45 RAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS-----LFLALKGKRCYVIFPTSLLV 99
Query: 82 PQQAEAIKM---HTDLKVG--KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL 136
Q AE I+ + + + + + + + ++++ T Q L
Sbjct: 100 IQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY-- 157
Query: 137 SYFKLNMIKVLILDECHH 154
+L + +D+
Sbjct: 158 --RELGHFDFIFVDDVDA 173
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 44.4 bits (104), Expect = 2e-05
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 432 QSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP-----SRTVCSFIQSR 486
++ EI+ + R G +V+V ++L EGLD+ +LV + D R+ S IQ+
Sbjct: 65 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 124
Query: 487 GRARMQ 492
GRA
Sbjct: 125 GRAARN 130
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.0 bits (100), Expect = 8e-05
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 406 LLSELLPRHCTWKTKYIAGNNSGIQCQ-------------SRKKQNEIVEEFRRGLVNVI 452
L E+L RH K +N + SR+++ EI+E FR G I
Sbjct: 83 KLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAI 142
Query: 453 VATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
V++ +L+EG+DV N+ ++ S + +IQ GR
Sbjct: 143 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 179
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (97), Expect = 8e-05
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 839 VCTPHNGQ---IYCITGVLGHLNANSLFTRN----NGSVTTYKKHYEERYGIQLCFDREP 891
V H GQ Y + V ++ F T ++++++Y +QL + P
Sbjct: 42 VEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLP 101
Query: 892 LLNGRRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRII 931
L + K ++ LP E+C I+
Sbjct: 102 CLQ------------------VGQEQKHTY-LPLEVCNIV 122
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 17/160 (10%)
Query: 23 RNYQLEALE-----NALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77
R YQ++ N L + + G GKTL I ++ ++ ++ + P
Sbjct: 14 RPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA---VFSDAKKENELTPSLVICPL 70
Query: 78 VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS 137
VL + E K L+ + D K ++ +++++ T +LL RL
Sbjct: 71 SVLKNWEEELSKFAPHLRFAVFHEDR---------SKIKLEDYDIILTTYAVLLRDTRLK 121
Query: 138 YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD 177
+ I + + + K A + +R+ TG
Sbjct: 122 EVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGT 161
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 1e-04
Identities = 14/68 (20%), Positives = 20/68 (29%)
Query: 1324 HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACK 1383
P++ L EY K T + T KK AK A +
Sbjct: 3 TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAE 62
Query: 1384 EVLKSLRA 1391
+ L+A
Sbjct: 63 AAINILKA 70
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81
R Q E ++ L ++ +V + TG GK+L + + V + P + L+
Sbjct: 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG--------LTVVVSPLISLM 78
Query: 82 PQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
Q + ++ + + + +L + P+ L+ L +
Sbjct: 79 KDQVDQLQANGV-AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH 137
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
+L +DE H +L + + +TA
Sbjct: 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT--LPFMALTA 182
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM 472
+ +S +K++ I++EFR G V+++T + GLDV +L+I
Sbjct: 49 WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 108
Query: 473 FDPSRTVCSFIQSRGRA--RMQNSDYLLMVKSGDSTTQSRLENYL 515
+D +I GR+ + + VK+ D +E Y
Sbjct: 109 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 153
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 40.5 bits (94), Expect = 4e-04
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 431 CQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC-----SFIQS 485
K+ ++ + R G + +V ++L EGLD+ +LV + D + S IQ+
Sbjct: 64 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 486 RGRAR 490
GRA
Sbjct: 124 IGRAA 128
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (90), Expect = 6e-04
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 1297 SGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTV 1356
SG + + + P+ P L E+C++ + +
Sbjct: 3 SGSSGSGIIKMAIRFDRRAYPPQIT---PKMCLLEWCRREKLPQPVYETVQRTIDRMFCS 59
Query: 1357 EVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
V + ++ T D KK A++ A L+S
Sbjct: 60 VVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQ 92
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.8 bits (89), Expect = 0.001
Identities = 18/148 (12%), Positives = 52/148 (35%), Gaps = 17/148 (11%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429
E+ L L ++ ++F + + +
Sbjct: 15 ERFEALCRLLKN----KEFYGLVFCKTKRDT-----------KELASMLRDIGFKAGAIH 59
Query: 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489
S+ ++ +++ F++ + +++AT ++ G+DV N VI + + S++ GR
Sbjct: 60 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 119
Query: 490 R--MQNSDYLLMVKSGDSTTQSRLENYL 515
+ + ++ + +E +
Sbjct: 120 GRAGKKGKAISIINRREYKKLRYIERAM 147
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Score = 35.9 bits (82), Expect = 0.002
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 1325 PVRELTEYCQKNHFSMKKPVASRISGKA-AVTVEVQANGRLFEHTFLDADKKTAKKVACK 1383
PV L E + + + + ++ SG + F T K+ AK+VA +
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 1384 EVLKSLRA 1391
++L +
Sbjct: 62 KLLTKFKT 69
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.003
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 1316 ITPETMRFHPVRELTEYCQKNHFSMKK-PVASRISGKAAVTVEVQANGRLFEHTFLDADK 1374
++P+ +PV L E + + + + V + F K
Sbjct: 2 VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 61
Query: 1375 KTAKKVACKEVLKSL 1389
K AK+ A ++L +
Sbjct: 62 KLAKRNAAAKMLLRV 76
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.004
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 1324 HPVRELTEYCQKNHFS-MKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVAC 1382
V L EY Q+ + V +G + + + KK AK A
Sbjct: 10 SEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAA 68
Query: 1383 KEVLKSLRASF 1393
+ L+ L F
Sbjct: 69 RATLEILIPDF 79
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 35.4 bits (81), Expect = 0.004
Identities = 11/67 (16%), Positives = 22/67 (32%)
Query: 1324 HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACK 1383
P+ ++ E K + ++ V KK +KK A +
Sbjct: 8 SPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAE 67
Query: 1384 EVLKSLR 1390
++L L+
Sbjct: 68 KMLVELQ 74
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1396 | |||
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 100.0 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.97 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.96 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.95 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.95 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.93 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.92 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.91 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.91 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.91 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.91 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.89 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.89 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.89 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.89 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.89 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.88 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.87 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.87 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.87 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.87 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.86 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.85 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.84 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.82 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.81 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.79 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.78 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.78 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.77 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.77 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.76 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.76 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.76 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.74 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.68 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.68 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.65 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.64 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.64 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.64 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.63 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.59 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.2 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 98.99 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.97 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 98.97 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 98.94 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.91 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 98.9 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.88 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 98.84 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.84 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.83 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.83 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.79 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.79 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.71 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.71 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.68 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.56 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.39 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.33 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.12 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.12 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.1 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.04 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 98.01 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 97.99 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.87 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 97.52 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.46 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.13 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.1 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.8 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.78 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.49 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.42 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 96.31 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.91 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.69 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 95.59 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 95.52 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 95.49 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 95.49 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.3 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 95.04 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 94.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.94 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 94.9 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 94.86 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.84 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.47 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 94.23 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.15 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 93.92 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.72 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 93.66 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.61 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 93.53 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 93.36 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.2 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 93.04 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.75 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.14 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 91.81 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.64 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.77 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 90.62 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 90.23 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.32 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 89.28 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.2 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.83 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.83 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.73 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.6 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.93 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 84.85 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.73 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 84.19 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 84.13 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.41 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.23 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.15 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 83.12 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 82.92 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 82.54 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 82.53 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 82.01 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 81.59 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 81.55 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 81.54 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.48 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 81.28 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.1 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.63 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 80.46 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 80.26 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.22 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.5e-34 Score=240.04 Aligned_cols=137 Identities=32% Similarity=0.521 Sum_probs=127.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
Q ss_conf 99999881951179789999732688888989886411345557776799999999849999921799999992091689
Q 000607 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCY 1230 (1396)
Q Consensus 1151 ~~~le~~lgy~f~~~~Ll~~AltH~S~~~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~L~~lrs~lv~n~~l 1230 (1396)
++.+|++|||+|+|+.||.+||||+||. ...+|||||||||+||+++++.|+|.+||+.++|.||.+|+.+|||.+|
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~---~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~L 78 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYS---KKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 78 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTC---SSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8899999898628889999986685768---8755099999998887545578998508775167887777776413676
Q ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHH
Q ss_conf 99999839815773089357787877686543201698877654468971467899997650255069886999997631
Q 000607 1231 ALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1231 a~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~EA~iGAi~~D~g~~~~~~~~~~~~ 1310 (1396)
|.+|.++||+++++.+++. ..+|++||+|||++||||+|+|.+...+++|+.+
T Consensus 79 a~~a~~lgl~~~i~~~~~~---------------------------~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~ 131 (148)
T d2nuga1 79 NLLAQKLELHKFIRIKRGK---------------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFYK 131 (148)
T ss_dssp HHHHHTTTGGGTCBSCTTC---------------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC---------------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 6578885088998752642---------------------------0103657899998877642268779999999999
Q ss_pred CCCCCCC
Q ss_conf 0145657
Q 000607 1311 LLEPMIT 1317 (1396)
Q Consensus 1311 ~l~~~~~ 1317 (1396)
++.|.+.
T Consensus 132 l~~~~i~ 138 (148)
T d2nuga1 132 LFKEDIL 138 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.97 E-value=2.5e-29 Score=205.67 Aligned_cols=269 Identities=18% Similarity=0.140 Sum_probs=169.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH
Q ss_conf 89899947981289999999999999946999948999928853189999999871697088995898865678010587
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++|+.+|||+|||++++..+.+.. .. .++++++++||++|+.|+++.++.... .+....+. ..
T Consensus 10 ~~~lv~~~TGsGKT~~~l~~~~~~~--~~--~~~~~lvi~Ptr~La~q~~~~l~~~~~-~~~~~~~~-----------~~ 73 (305)
T d2bmfa2 10 RLTIMDLHPGAGKTKRYLPAIVREA--IK--RGLRTLILAPTRVVAAEMEEALRGLPI-RYQTPAIR-----------AE 73 (305)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHH--HH--HTCCEEEEESSHHHHHHHHHHTTTSCC-BCCC-----------------
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH--HH--CCCEEEEECCHHHHHHHHHHHHHCCCC-CEEEEEEE-----------EC
T ss_conf 9499997999978799999999998--72--699899982389999999999854875-21113785-----------01
Q ss_pred HHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 40159199956999999573017543653599993431013788099999999973203899999919998134777989
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKV 195 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~ 195 (1396)
......++++|++.|...... ...+.+++++|+||||++... ......+..... .....+++++|||+.....
T Consensus 74 ~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~---~~~~~~~l~~~~---~~~~~~~v~~SAT~~~~~~ 146 (305)
T d2bmfa2 74 HTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPA---SIAARGYISTRV---EMGEAAGIFMTATPPGSRD 146 (305)
T ss_dssp --CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH---HHTSCEEEEECSSCTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHC-CCCCCCEEEEEEEEEEECCHH---HHHHHHHHHHHH---CCCCCEEEEEECCCCCCEE
T ss_conf 257653013774899999845-853154008985301112520---578889999841---6653138994157876433
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99646699999999988277289604732320236687401472568998624699999999999999986542101115
Q 000607 196 SSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNE 275 (1396)
Q Consensus 196 ~~~~~~~~~~i~~Le~~L~s~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~ 275 (1396)
... ....+..... . ..+..
T Consensus 147 ~~~------------------------------~~~~~~~~~~--~--~~~~~--------------------------- 165 (305)
T d2bmfa2 147 PFP------------------------------QSNAPIMDEE--R--EIPER--------------------------- 165 (305)
T ss_dssp SSC------------------------------CCSSCEEEEE--C--CCCCS---------------------------
T ss_pred EEC------------------------------CCCCCCEEEE--E--ECCHH---------------------------
T ss_conf 402------------------------------3478612799--8--61588---------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999999999999999999996788999999998601235101231025525899999989999999873359985444
Q 000607 276 AQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSI 355 (1396)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 355 (1396)
T Consensus 166 -------------------------------------------------------------------------------- 165 (305)
T d2bmfa2 166 -------------------------------------------------------------------------------- 165 (305)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHH
Q ss_conf 88876667889862899999999953028999039999630788999999997335878996135881589976778988
Q 000607 356 GDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRK 435 (1396)
Q Consensus 356 ~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~ 435 (1396)
.. .... ..+. ....++||||+++..+..++..|++. ++++..+||.. .
T Consensus 166 ------~~-----~~~~----~~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~------~-- 213 (305)
T d2bmfa2 166 ------SW-----NSGH----EWVT----DFKGKTVWFVPSIKAGNDIAACLRKN-----GKKVIQLSRKT------F-- 213 (305)
T ss_dssp ------CC-----SSCC----HHHH----SSCSCEEEECSCHHHHHHHHHHHHHH-----TCCCEECCTTC------H--
T ss_pred ------HH-----HHHH----HHHH----HHCCCEEEEECCHHHHHHHHHHHHHC-----CCCEEEECCCC------H--
T ss_conf ------89-----9999----9999----60799899963099999999999867-----99899957838------4--
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEE----------EECC----------CCCHHHHHHHHHCCCCCC--
Q ss_conf 999999998359812999803454555787535899----------9379----------985778998640136789--
Q 000607 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI----------MFDP----------SRTVCSFIQSRGRARMQN-- 493 (1396)
Q Consensus 436 ~r~~~l~~Fr~g~~niLVaT~v~eeGIDIp~~~~VI----------~fD~----------p~s~~~yiQr~GRA~R~g-- 493 (1396)
.+....|++|..+++|||++++.|+|++ .+.|| .||. |.|..+|+||.||++|.|
T Consensus 214 --~~~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~ 290 (305)
T d2bmfa2 214 --DSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKN 290 (305)
T ss_dssp --HHHGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSC
T ss_pred --HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCC
T ss_conf --7777543100011355567887257888-4089975874146573389876388044569988983241186828999
Q ss_pred CCEEEEEECC
Q ss_conf 8099999659
Q 000607 494 SDYLLMVKSG 503 (1396)
Q Consensus 494 s~~i~lv~~~ 503 (1396)
+.+.++....
T Consensus 291 ~~~~~~~~~~ 300 (305)
T d2bmfa2 291 ENDQYIYMGE 300 (305)
T ss_dssp CCEEEEECSC
T ss_pred CEEEEEECCC
T ss_conf 2699998998
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=6.5e-28 Score=196.39 Aligned_cols=177 Identities=27% Similarity=0.346 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CCE
Q ss_conf 62121999999999860898999479812899999999999999469999489999288531899999998716---970
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DLK 95 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~---~l~ 95 (1396)
.+.||+||.++++.++++|+|+++|||+|||+++++++...... .+++++|++|+++|+.||++.+++++ +.+
T Consensus 7 ~~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~~----~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~ 82 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (200)
T ss_dssp HHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78988999999999963996999189972889999999999970----69818997370577778899999863355420
Q ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88995898865678010587401591999569999995730175436535999934310137880999999999732038
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~ 175 (1396)
+..+.++... ..+...+.+.+|+++|++.+.+.+.+..+.+++++++|+||||++.+++.+..+...+...
T Consensus 83 v~~~~~~~~~-----~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~---- 153 (200)
T d1wp9a1 83 IVALTGEKSP-----EERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ---- 153 (200)
T ss_dssp EEEECSCSCH-----HHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH----
T ss_pred EEEEECCCCH-----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHC----
T ss_conf 1342036645-----6777765114222343202577876313311566618998621131221689999999865----
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 99999919998134777989996466999999999882772896
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT 219 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~ 219 (1396)
...+++++|||||.... ..+.++...++.....
T Consensus 154 --~~~~~~l~~SATp~~~~---------~~~~~~~~~l~~~~i~ 186 (200)
T d1wp9a1 154 --AKNPLVIGLTASPGSTP---------EKIMEVINNLGIEHIE 186 (200)
T ss_dssp --CSSCCEEEEESCSCSSH---------HHHHHHHHHTTCCEEE
T ss_pred --CCCCCEEEEEECCCCCH---------HHHHHHHHCCCCEEEE
T ss_conf --89985799996179739---------9999998469954999
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.95 E-value=9.9e-28 Score=195.21 Aligned_cols=127 Identities=26% Similarity=0.310 Sum_probs=113.6
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH
Q ss_conf 99999998200355888897999998624586634881246644446887899999998539899220069886402419
Q 000607 959 AVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNA 1038 (1396)
Q Consensus 959 a~~l~~~l~~~~~~~~~~~~~~ll~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~ 1038 (1396)
-+++++.|+|+|++. .++.+||||+|+....||||||||||++|+++++.++|..||+.++|.||..|+.+|||.
T Consensus 2 l~~le~~igy~F~n~-----~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~ 76 (148)
T d2nuga1 2 LEQLEKKLGYTFKDK-----SLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEE 76 (148)
T ss_dssp HHHHHHHHTCCCSSH-----HHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHCCCCCCH-----HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 889999989862888-----999998668576887550999999988875455789985087751678877777764136
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99998896697443122345789855799999987667644467864222461011561246799999999760598167
Q 000607 1039 ALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENV 1118 (1396)
Q Consensus 1039 ~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~AD~vEAliGA~~~~~G~~~ 1118 (1396)
+|+.+|.++||++||+. .++. ..+|++||+|||+|||+|+|+|.+.
T Consensus 77 ~La~~a~~lgl~~~i~~---------~~~~-------------------------~~~kilad~~EAiiGAiylD~g~~~ 122 (148)
T d2nuga1 77 FFNLLAQKLELHKFIRI---------KRGK-------------------------INETIIGDVFEALWAAVYIDSGRDA 122 (148)
T ss_dssp HHHHHHHTTTGGGTCBS---------CTTC-------------------------CCHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHH---------CCCC-------------------------CHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 76657888508899875---------2642-------------------------0103657899998877642268779
Q ss_pred --HHHHHH
Q ss_conf --998774
Q 000607 1119 --GLIFLD 1124 (1396)
Q Consensus 1119 --a~~~~~ 1124 (1396)
+.+++.
T Consensus 123 ~~~~~~i~ 130 (148)
T d2nuga1 123 NFTRELFY 130 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=1.9e-25 Score=180.16 Aligned_cols=134 Identities=31% Similarity=0.413 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHH-HCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf 2899999999953-02899903999963078899999999733587899613588158997--67789889999999983
Q 000607 369 TEKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFR 445 (1396)
Q Consensus 369 s~K~~~L~~~L~~-~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~--~~~m~~~~r~~~l~~Fr 445 (1396)
+||+..|.++|.. +...++.++||||+++.++..+++.|.+ .++++..++|.... ..+|+.++|+++++.|+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~ 216 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK-----DGIKAKRFVGQASKENDRGLSQREQKLILDEFA 216 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH-----TTCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHH
T ss_conf 828999999999999718998489996718867999999997-----699648860566433420102288999999987
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCEEEEEECCCCCH
Q ss_conf 598129998034545557875358999379985778998640136789-80999996599433
Q 000607 446 RGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTT 507 (1396)
Q Consensus 446 ~g~~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~ 507 (1396)
+|++++||||++++||||+|+|++||+||+|||+..|+||+||++|.+ +.++.|+..+..++
T Consensus 217 ~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~ee 279 (286)
T d1wp9a2 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 279 (286)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHH
T ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHH
T ss_conf 699829997144020366888998999589989899999998578799988999983898899
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.92 E-value=7.2e-25 Score=176.42 Aligned_cols=164 Identities=24% Similarity=0.250 Sum_probs=117.2
Q ss_pred CCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCC---C
Q ss_conf 621219999999998608-989994798128999999999999994699994899992885318999999987169---7
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---L 94 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~---l 94 (1396)
...||+||.+++..++++ ++++.+|||+|||+++.++++.+... ...+++|+||+++|+.||++.+.++.. .
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~----~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~ 186 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 465646777877999854972168871158307889999986532----5632899976722578999999875036534
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 08899589886567801058740159199956999999573017543653599993431013788099999999973203
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~ 174 (1396)
.+..+.++.... .......+|+++|+|.+.+... ..++++++||+|||||+.++ .+..+|..
T Consensus 187 ~~~~~~~g~~~~-------~~~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~~a~-~~~~il~~------- 248 (282)
T d1rifa_ 187 MIKKIGGGASKD-------DKYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK-SISSIISG------- 248 (282)
T ss_dssp GEEECSTTCSST-------TCCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH-HHHHHTTT-------
T ss_pred CCEEECCEECCC-------CCCCCCCEEEEEEEEHHHHHCC---CCCCCCCEEEEECCCCCCCH-HHHHHHHH-------
T ss_conf 530340200256-------5233232699986403222021---00578879999899788832-09999974-------
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 89999991999813477798999646699999999988277
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS 215 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s 215 (1396)
..+.+.++||||||...... .-.|+..++.
T Consensus 249 --~~~~~~rlGlTaT~~~~~~~---------~~~l~g~~Gp 278 (282)
T d1rifa_ 249 --LNNCMFKFGLSGSLRDGKAN---------IMQYVGMFGE 278 (282)
T ss_dssp --CTTCCEEEEECSSCCTTSTT---------HHHHHHHHCE
T ss_pred --CCCCCEEEEEEEECCCCCCC---------EEEEEEECCC
T ss_conf --61889699999615998734---------4898420677
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=4.5e-24 Score=171.20 Aligned_cols=128 Identities=18% Similarity=0.372 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|.++|.. .+.++||||+++.++..++..|+.. ++.+..++|. ++..+|..++++|++|+
T Consensus 14 ~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~~-----g~~~~~~~~~------~~~~~r~~~~~~f~~~~ 78 (155)
T d1hv8a2 14 NERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGD------LSQSQREKVIRLFKQKK 78 (155)
T ss_dssp GGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSS------SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCC----CCCCEEEEECCHHHHHHHHHHHCCC-----CCCCCCCCCC------CHHHHHHHHHHHHHCCC
T ss_conf 9999999999726----9998999979448998887652334-----3222233331------00113456665541211
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCCCCHHHHH
Q ss_conf 129998034545557875358999379985778998640136789--809999965994339999
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i 511 (1396)
.++||||+++++|+|+|.|++||+||+|+|+.+|+||.||++|.| +.++.++.+.+....+.+
T Consensus 79 ~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i 143 (155)
T d1hv8a2 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI 143 (155)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 12553036776543221276799964999999999887763747997369999866899999999
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=7.3e-24 Score=169.82 Aligned_cols=127 Identities=23% Similarity=0.407 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|.++|... +..++||||+++.+++.++..|... ++.+..+||. |++++|.+++++|++|+
T Consensus 17 ~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~-----g~~~~~~h~~------~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 17 RQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHAR------MKQQERNKVFHEFRQGK 82 (171)
T ss_dssp GGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTT------SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEEEHHHHHHHHHHCC-----CCCCCCCCCC------CCHHHHHHHHHHCCCCC
T ss_conf 99999999999848---9876599972241356767765013-----3443334333------21145665532113686
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCCCCHHH
Q ss_conf 129998034545557875358999379985778998640136789--8099999659943399
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQS 509 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~ 509 (1396)
.++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.| +.++.++..++....+
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~ 145 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY 145 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHH
T ss_pred CCCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
T ss_conf 311012017654104662489996487602777877755314179961799985789999999
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1e-23 Score=168.80 Aligned_cols=129 Identities=22% Similarity=0.343 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|.+++... ...++||||+++.+++.++..|... ++.+..+||. |++.+|.+++++|+.|+
T Consensus 12 e~K~~~L~~ll~~~---~~~k~iIF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~------~~~~~r~~~l~~f~~~~ 77 (162)
T d1fuka_ 12 EYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSD------LPQQERDTIMKEFRSGS 77 (162)
T ss_dssp GGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTT------SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEECHHHHHHHHHHHC-----CCEEEEECCC------CCHHHHHHHHHHHHHCC
T ss_conf 78999999999848---9885899998870699999888654-----9559995167------75236778999876403
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCCCCHHHHH
Q ss_conf 129998034545557875358999379985778998640136789--809999965994339999
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i 511 (1396)
.++||||+++++|+|+|++++||+||+|+++..|+||.||++|.| |.++.+++.++......+
T Consensus 78 ~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i 142 (162)
T d1fuka_ 78 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 142 (162)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHH
T ss_pred CCEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 64565156234465577750899934514677887650144547986479998179999999999
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=8.9e-24 Score=169.25 Aligned_cols=139 Identities=29% Similarity=0.333 Sum_probs=110.6
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 98621219999999998608-98999479812899999999999999469999489999288531899999998716970
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLK 95 (1396)
Q Consensus 17 ~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~ 95 (1396)
.....||+||.++++.++++ +.++.+|||+|||++++.++.++ +++++|+||+++|+.||.+.++.+....
T Consensus 66 ~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~Liv~p~~~L~~q~~~~~~~~~~~~ 137 (206)
T d2fz4a1 66 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIFGEEY 137 (206)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGGCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHH--------CCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 89998499999999999967990999578998264377678774--------6724578724224899999998615511
Q ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88995898865678010587401591999569999995730175436535999934310137880999999999732038
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~ 175 (1396)
++.+.|.... ..+|+++|++.+......- .+++++||+|||||+.++ .+.+++..
T Consensus 138 ~~~~~~~~~~-------------~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~-~~~~i~~~-------- 192 (206)
T d2fz4a1 138 VGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE-SYVQIAQM-------- 192 (206)
T ss_dssp EEEESSSCBC-------------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTT-THHHHHHT--------
T ss_pred HHHCCCCCCC-------------CCCCCCCEEHHHHHHHHHH---CCCCCEEEEECCEECCCH-HHHHHHHC--------
T ss_conf 1101465321-------------0210012322555536765---775779999898217837-99999850--------
Q ss_pred CCCCCCEEEEEECCC
Q ss_conf 999999199981347
Q 000607 176 GDSNLPRIFGMTASP 190 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp 190 (1396)
...++++|||||+
T Consensus 193 --~~~~~~lgLTATl 205 (206)
T d2fz4a1 193 --SIAPFRLGLTATF 205 (206)
T ss_dssp --CCCSEEEEEEESC
T ss_pred --CCCCCEEEEECCC
T ss_conf --6898489995589
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-23 Score=167.82 Aligned_cols=126 Identities=22% Similarity=0.318 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|.+++... ...++||||+++.++..++..|+.. ++.+..+||. |++++|.+++++|++|+
T Consensus 19 ~~K~~~L~~ll~~~---~~~k~iiF~~~~~~~~~~~~~l~~~-----~~~~~~~~~~------~~~~~r~~~~~~fk~g~ 84 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGD------MPQKERESIMKEFRSGA 84 (168)
T ss_dssp THHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTT------SCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEHHHHHHHHHHHHHC-----CCCHHHHHHH------HHHHHHHHHHHHHHCCC
T ss_conf 99999999999847---8776399960588878888776630-----4431333112------25789999999986388
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCCCCHH
Q ss_conf 129998034545557875358999379985778998640136789--809999965994339
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~ 508 (1396)
.++||||+++++|+|+|.+++||+||+|++...|+||.||++|.| +.++.++..++....
T Consensus 85 ~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~ 146 (168)
T d2j0sa2 85 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRIL 146 (168)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHH
T ss_pred CCEEECCCHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHH
T ss_conf 40774144100565535765689933776787887661044526997479999778999999
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.91 E-value=1.8e-22 Score=160.74 Aligned_cols=124 Identities=26% Similarity=0.336 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 89999999995302899903999963078899999999733587899613588158997677898899999999835981
Q 000607 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV 449 (1396)
Q Consensus 370 ~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~~ 449 (1396)
.++..|+..+.+. ...+.++||||+++..++.++..|+.. ++++..+||+ |++.+|.+++++||+|++
T Consensus 15 ~qvd~ll~~i~~~-~~~~~~~iif~~~~~~~~~~~~~l~~~-----g~~~~~~hg~------~~~~eR~~~l~~Fr~g~~ 82 (181)
T d1t5la2 15 GQIDDLIGEIRER-VERNERTLVTTLTKKMAEDLTDYLKEA-----GIKVAYLHSE------IKTLERIEIIRDLRLGKY 82 (181)
T ss_dssp THHHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS------CCHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHH-HHCCCEEEEEEEHHHHHHHHHHHHHHC-----CCCEEEECCC------CCHHHHHHHHHHHHCCCC
T ss_conf 8499999999999-962982899961034667888878767-----9404674178------638899999999978998
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEECCCC-----CHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 2999803454555787535899937998-----5778998640136789809999965994
Q 000607 450 NVIVATSILEEGLDVQSCNLVIMFDPSR-----TVCSFIQSRGRARMQNSDYLLMVKSGDS 505 (1396)
Q Consensus 450 niLVaT~v~eeGIDIp~~~~VI~fD~p~-----s~~~yiQr~GRA~R~gs~~i~lv~~~~~ 505 (1396)
++||||+++++|||+|++++||+||+|. +..+|+||.|||+|.|..+..+......
T Consensus 83 ~vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~~~~ 143 (181)
T d1t5la2 83 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTIT 143 (181)
T ss_dssp SEEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred CEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 8897624777138999978899956996455435899999987624566745674021145
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=7.1e-23 Score=163.32 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=128.6
Q ss_pred CCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCC--C
Q ss_conf 8621219999999998608-989994798128999999999999994699994899992885318999999987169--7
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD--L 94 (1396)
Q Consensus 18 ~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~--l 94 (1396)
....|++||.++++.++++ |+++++|||+|||++|.+.+..... .++++++++|+++|+.|+.+.++++.+ .
T Consensus 22 g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~-----~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~ 96 (202)
T d2p6ra3 22 GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-----KGGKSLYVVPLRALAGEKYESFKKWEKIGL 96 (202)
T ss_dssp ---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHTTTTTTTC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCCCEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999984999899868998511789999998762-----257603316627899999999999863244
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC---HHHHHHHHHHH
Q ss_conf 088995898865678010587401591999569999995730175436535999934310137880---99999999973
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQ---YACIMTEFYHR 171 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~---y~~im~~f~~~ 171 (1396)
++....|+.... .......+|+++|++.+...+.+....+..++++|+||||++.++.. +..++..+..
T Consensus 97 ~v~~~~~~~~~~-------~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~- 168 (202)
T d2p6ra3 97 RIGISTGDYESR-------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR- 168 (202)
T ss_dssp CEEEECSSCBCC-------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH-
T ss_pred CCEEECCCCCCC-------CCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHH-
T ss_conf 310002674332-------212232212540108998887511001103222246587775355431379999999986-
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 2038999999199981347779899964669999999998827728960
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC 220 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~~ 220 (1396)
.....++++||||..+ ..++.++|++..+..
T Consensus 169 -----~~~~~~~l~lSATl~n-------------~~~~~~~l~~~~~~s 199 (202)
T d2p6ra3 169 -----MNKALRVIGLSATAPN-------------VTEIAEWLDADYYVS 199 (202)
T ss_dssp -----HCTTCEEEEEECCCTT-------------HHHHHHHTTCEEEEC
T ss_pred -----CCCCCCEEEECCCCCC-------------HHHHHHHCCCCEEEC
T ss_conf -----5999838998178875-------------999998708982117
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=4.6e-22 Score=158.01 Aligned_cols=162 Identities=22% Similarity=0.273 Sum_probs=127.2
Q ss_pred CCCCCCHHHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC--
Q ss_conf 98621219999999998608--98999479812899999999999999469999489999288531899999998716--
Q 000607 17 DTLPFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 17 ~~~~~~R~yQ~e~~e~al~~--n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
.....|.+.|.++++.++++ |+|+.++||+|||+++.+++.+. ....++.++++++||++|+.|+.+.++.+.
T Consensus 22 ~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~---~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~ 98 (208)
T d1hv8a1 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL---VNENNGIEAIILTPTRELAIQVADEIESLKGN 98 (208)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH---SCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCCC---CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999999998499974644100344440020333211---11246750699840333220334556665036
Q ss_pred -CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf -9708899589886567801058740159199956999999573017543653599993431013788099999999973
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~ 171 (1396)
+.++..+.|+.+.. .....+.+++|+|+||+.|.+.+.++.+.++++.++|+||||++.+.+.+..+ ......
T Consensus 99 ~~~~v~~~~g~~~~~-----~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i-~~I~~~ 172 (208)
T d1hv8a1 99 KNLKIAKIYGGKAIY-----PQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDV-EKILNA 172 (208)
T ss_dssp SCCCEEEECTTSCHH-----HHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHH-HHHHHT
T ss_pred CCEEEEEEECCCCHH-----HHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHH-HHHHHH
T ss_conf 770799852897869-----99986089999998869999999769977666869999884876108871779-999985
Q ss_pred HCCCCCCCCCEEEEEECCCCC
Q ss_conf 203899999919998134777
Q 000607 172 LLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.....+++++|||...
T Consensus 173 -----~~~~~Q~i~~SAT~~~ 188 (208)
T d1hv8a1 173 -----CNKDKRILLFSATMPR 188 (208)
T ss_dssp -----SCSSCEEEEECSSCCH
T ss_pred -----CCCCCEEEEEECCCCH
T ss_conf -----8998859999702798
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1e-22 Score=162.31 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|+++|... .+.++||||+++..++.++..|... ++.+..+||. |++.+|.+++++|++|+
T Consensus 15 ~~k~~~L~~~l~~~---~~~~~IIF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~------~~~~~r~~~~~~f~~g~ 80 (200)
T d1oywa3 15 FKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAG------LENNVRADVQEKFQRDD 80 (200)
T ss_dssp SSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT------SCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHC---CCCCEEEEEEEEHHHHHHHHHHCCC-----CCEEEEECCC------CCHHHHHHHHHHHHCCC
T ss_conf 76899999999856---9998899982231167764432447-----8535775388------71777899998874134
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCCC
Q ss_conf 129998034545557875358999379985778998640136789--809999965994
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDS 505 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~ 505 (1396)
+++||||+++++|||+|++++||+||+|+++.+|+||.|||+|.| +.+++++...+.
T Consensus 81 ~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~ 139 (200)
T d1oywa3 81 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 139 (200)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CEEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHH
T ss_conf 30787402345316887888999877751168898875453137777258775178898
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.9e-22 Score=160.54 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
+.|...|.++|... +..++||||+++.++..++..|+.. ++++..+||+ |++.+|.+++++|++|+
T Consensus 12 ~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l~~~L~~~-----~~~~~~ihg~------~~~~~r~~~l~~F~~g~ 77 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRG------MPQEERLSRYQQFKDFQ 77 (168)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT------SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC---CCCEEEEEEEEEECCHHHHHHHCCC-----CCCCCCCCCC------CCHHHHHHHHHHHCCCC
T ss_conf 99999999999838---9981999980344110133343012-----4443211122------21022221122111222
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEEC
Q ss_conf 129998034545557875358999379985778998640136789--809999965
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKS 502 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~ 502 (1396)
+++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.| +.++.++..
T Consensus 78 ~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~ 133 (168)
T d1t5ia_ 78 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 133 (168)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred CEEEECCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 11441233011001204413443221132214576542231528985189999884
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.2e-22 Score=156.69 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=128.1
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 98621219999999998608-98999479812899999999999999469999489999288531899999998716---
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 17 ~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.....|.+.|..+++.+++| |+++.++||||||+++++++.+. ........++++++||++|+.|.++.++++.
T Consensus 35 ~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~--l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~ 112 (222)
T d2j0sa1 35 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC--LDIQVRETQALILAPTRELAVQIQKGLLALGDYM 112 (222)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHT--CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCC--CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 79999999999999999879986997574341454404540110--0333467425775552888899999999984756
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97088995898865678010587401591999569999995730175436535999934310137880999999999732
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~ 172 (1396)
++++..+.|+.+.+ ........+.+|+|+||+++.+.+.++.+.++++.++|+||||.+.+.. +...+...+..
T Consensus 113 ~i~~~~~~g~~~~~----~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~-f~~~i~~I~~~- 186 (222)
T d2j0sa1 113 NVQCHACIGGTNVG----EDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG-FKEQIYDVYRY- 186 (222)
T ss_dssp TCCEEEECTTSCHH----HHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT-THHHHHHHHTT-
T ss_pred CEEEEEEEECCCCH----HHHHHHCCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCHHHHHHCC-CHHHHHHHHHH-
T ss_conf 34588875112102----4678751487388679875776120010344423035542246765257-39999999996-
Q ss_pred CCCCCCCCCEEEEEECCCCC
Q ss_conf 03899999919998134777
Q 000607 173 LETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~ 192 (1396)
.....+++++|||...
T Consensus 187 ----l~~~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 187 ----LPPATQVVLISATLPH 202 (222)
T ss_dssp ----SCTTCEEEEEESCCCH
T ss_pred ----CCCCCEEEEEEEECCH
T ss_conf ----8988879999972888
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-21 Score=152.71 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=128.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 55798621219999999998608-98999479812899999999999999469999489999288531899999998716
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 14 ~~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~ 92 (1396)
........|++.|.++++.+++| |+++.++||||||+++++++... ......+.++++++||++|+.|..+.++.+.
T Consensus 16 l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~--~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 93 (207)
T d1t6na_ 16 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ--LEPVTGQVSVLVMCHTRELAFQISKEYERFS 93 (207)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--CCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEE--ECCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99879999999999999999849985777223332120013440321--0246778628998512203678999999998
Q ss_pred ----CCEEEEEECCCCCCCCCCCCHHHH-HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf ----970889958988656780105874-015919995699999957301754365359999343101378809999999
Q 000607 93 ----DLKVGKYWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 93 ----~l~v~~~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~ 167 (1396)
..++..+.|+.... ...... ...++|+|+||+.+.+.+..+.+.++++.++|+||||.+.+...+...+..
T Consensus 94 ~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~ 169 (207)
T d1t6na_ 94 KYMPNVKVAVFFGGLSIK----KDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 169 (207)
T ss_dssp TTSTTCCEEEESCCSCHH----HHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCHH----HHHHHHHHCCCCEEEECCCHHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCHHHHHH
T ss_conf 438875167884565488----9999987368998990854643202588255430303402344445413785999999
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 9973203899999919998134777
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.... .....+++++|||...
T Consensus 170 I~~~-----~~~~~Q~il~SAT~~~ 189 (207)
T d1t6na_ 170 IFRM-----TPHEKQVMMFSATLSK 189 (207)
T ss_dssp HHHT-----SCSSSEEEEEESCCCT
T ss_pred HHHH-----CCCCCEEEEEEEECCH
T ss_conf 9974-----8898879999400888
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.87 E-value=1.3e-20 Score=148.57 Aligned_cols=173 Identities=18% Similarity=0.175 Sum_probs=129.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHH-------HCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 55798621219999999998608-98999479812899999999999999-------46999948999928853189999
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYL-------LRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 14 ~~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~-------~~~~~~k~~liLvPt~~Lv~Q~~ 85 (1396)
........|.+.|.++++.+++| |+++.++||+|||+++++.+...... .....+.++++|+||++|+.|+.
T Consensus 36 L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCHH
T ss_conf 99879998989999983664279978998777777511319999999972221112456777836999535144301001
Q ss_pred HHHHHH---CCCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf 999871---69708899589886567801058740159199956999999573017543653599993431013788099
Q 000607 86 EAIKMH---TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA 162 (1396)
Q Consensus 86 ~~i~~~---~~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~ 162 (1396)
+.+... .++++..+.|+...+ .........++|+|+||+.|.+.+..+.+.+.++.++|+||||++.... +.
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~-f~ 190 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTH----SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG-FE 190 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSH----HHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT-CH
T ss_pred EEEEECCCCCCCEEEEEECCCHHH----HHHHHCCCCCCEEECCHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHHC-CH
T ss_conf 011100357882799994452035----7776403687344067788776772692652664124420344554321-39
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 999999973203899999919998134777
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.-+....... .......++++++|||...
T Consensus 191 ~~i~~Il~~~-~~~~~~~~Q~il~SAT~~~ 219 (238)
T d1wrba1 191 PQIRKIIEES-NMPSGINRQTLMFSATFPK 219 (238)
T ss_dssp HHHHHHHHSS-CCCCGGGCEEEEEESSCCH
T ss_pred HHHHHHHHHH-CCCCCCCCEEEEEEEECCH
T ss_conf 9999999984-3899899889999632798
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.8e-21 Score=149.93 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=127.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 55798621219999999998608-98999479812899999999999999469999489999288531899999998716
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 14 ~~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~ 92 (1396)
........|++.|.++++.+++| |+++.++||||||+++++++.. ......++.++++++||++|+.|..+.++...
T Consensus 18 l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~--~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~ 95 (206)
T d1veca_ 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE--RLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHH--HCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHH--CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 9987999999999999999986998874436740011212464132--02102567524998403016689999999875
Q ss_pred ----CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf ----9708899589886567801058740159199956999999573017543653599993431013788099999999
Q 000607 93 ----DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEF 168 (1396)
Q Consensus 93 ----~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f 168 (1396)
+..+....|+.... .........++|+|+||+.+.+.+..+.+.++++.++|+||||.+.+. .+...+...
T Consensus 96 ~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~i~~I 170 (206)
T d1veca_ 96 KHMGGAKVMATTGGTNLR----DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDI 170 (206)
T ss_dssp TTSSSCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST-TTHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCHH----HHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCC-CHHHHHHHH
T ss_conf 115676421236774088----899988751670894796331123311000155406998414200112-229999999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 973203899999919998134777
Q 000607 169 YHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.... ....+++++|||...
T Consensus 171 ~~~~-----~~~~Q~~l~SAT~~~ 189 (206)
T d1veca_ 171 ILTL-----PKNRQILLYSATFPL 189 (206)
T ss_dssp HHHS-----CTTCEEEEEESCCCH
T ss_pred HHHC-----CCCCEEEEEEECCCH
T ss_conf 9868-----998879999944998
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=5.4e-22 Score=157.51 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CC
Q ss_conf 621219999999998608-98999479812899999999999999469999489999288531899999998716---97
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~---~l 94 (1396)
...|+++|.+++..+++| |+++.+|||+|||+++++++..... ++++++|++|+++|+.||++.++++. ++
T Consensus 41 ~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~-----~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~ 115 (237)
T d1gkub1 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL-----KGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 115 (237)
T ss_dssp TCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT-----TSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-----HCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf 59998999999999977997799926897699999999999987-----4583899944499999999999999998499
Q ss_pred EE----EEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCH-HHHHHH--
Q ss_conf 08----89958988656780105874015919995699999957301754365359999343101378809-999999--
Q 000607 95 KV----GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQY-ACIMTE-- 167 (1396)
Q Consensus 95 ~v----~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y-~~im~~-- 167 (1396)
++ +.+.++ ...+....+.....+.+|+|+||+.+.+. ...+.+++++|+||||++.+.+.. .+....
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g 189 (237)
T d1gkub1 116 GTENLIGYYHGR--IPKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILKASKNVDKLLHLLG 189 (237)
T ss_dssp SGGGSEEECCSS--CCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred CEEEEEEEEECC--CCHHHHHHHHCCCCCCCEECCCHHHHHHH----HHHCCCCCEEEEECHHHHHHCCCCHHHHHHHCC
T ss_conf 469998554225--41235655540344442322686999975----443477888999992666433421457888618
Q ss_pred HHHHH--CCCCCCCCCEEEEEECCCCCC
Q ss_conf 99732--038999999199981347779
Q 000607 168 FYHRL--LETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 168 f~~~~--~~~~~~~~p~ilgLTATp~~~ 193 (1396)
|.... ........++++++|||+..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 190 FHYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 7399999986278888599990789945
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.4e-20 Score=148.24 Aligned_cols=119 Identities=26% Similarity=0.393 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999530289990399996307889999999973358789961358815899767789889999999983598129
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNV 451 (1396)
Q Consensus 372 ~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~~ni 451 (1396)
+..|++.+.+.. .++.++||||.++.+++.++..|+.. |+++..+||. |++.+|.+++++|++|++.|
T Consensus 17 v~dll~~i~~~~-~~g~r~lvfc~t~~~~~~l~~~L~~~-----Gi~a~~~Hg~------~~~~eR~~~l~~F~~G~~~v 84 (174)
T d1c4oa2 17 ILDLMEGIRERA-ARGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHE------LDAFKRQALIRDLRLGHYDC 84 (174)
T ss_dssp HHHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT------CCHHHHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHC-----CCCEEEEECC------CCHHHHHHHHHHHHCCCEEE
T ss_conf 999999999998-65983899982303799999999865-----9725898615------54188999999997798699
Q ss_pred EEEECCCCCCCCCCCCCEEEEECCCC-----CHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99803454555787535899937998-----5778998640136789809999965
Q 000607 452 IVATSILEEGLDVQSCNLVIMFDPSR-----TVCSFIQSRGRARMQNSDYLLMVKS 502 (1396)
Q Consensus 452 LVaT~v~eeGIDIp~~~~VI~fD~p~-----s~~~yiQr~GRA~R~gs~~i~lv~~ 502 (1396)
||||+++++|||+|++++||+||+|. +..+|+|+.|||+|.+...+++...
T Consensus 85 LVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~ 140 (174)
T d1c4oa2 85 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYAD 140 (174)
T ss_dssp EEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99635642113677773899803654455301677998861443047870689626
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-20 Score=148.51 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=125.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC--
Q ss_conf 798621219999999998608-98999479812899999999999999469999489999288531899999998716--
Q 000607 16 ADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 16 ~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
......|.+.|..++..++.| |+++.++||||||+++++++.+. ......+.++++++||++|+.|.++.++.+.
T Consensus 29 ~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~--i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~ 106 (218)
T d2g9na1 29 AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ--IELDLKATQALVLAPTRELAQQIQKVVMALGDY 106 (218)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHH--CCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHE--ECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 889999999999999999769988997256254455433102220--003666751899824511235677777651244
Q ss_pred -CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf -9708899589886567801058740159199956999999573017543653599993431013788099999999973
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~ 171 (1396)
+..+....|+..... .........++|+|+||+.+.+.+..+...++++.++|+||||.+.+.. +...+...+..
T Consensus 107 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~-f~~~~~~Il~~ 182 (218)
T d2g9na1 107 MGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG-FKDQIYDIFQK 182 (218)
T ss_dssp TTCCEEEECC--CCCS---TTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT-CHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHH---HHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCHHHCCC-HHHHHHHHHHH
T ss_conf 3216876302453067---7888764887799967815777886288324653489864021021276-08999999996
Q ss_pred HCCCCCCCCCEEEEEECCCCC
Q ss_conf 203899999919998134777
Q 000607 172 LLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~ 192 (1396)
. ....+++++|||...
T Consensus 183 ~-----~~~~Q~il~SAT~~~ 198 (218)
T d2g9na1 183 L-----NSNTQVVLLSATMPS 198 (218)
T ss_dssp S-----CTTCEEEEEESCCCH
T ss_pred C-----CCCCEEEEEEECCCH
T ss_conf 8-----999869999805998
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=5.9e-20 Score=144.17 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=124.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC-
Q ss_conf 5798621219999999998608-98999479812899999999999999469999489999288531899999998716-
Q 000607 15 SADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 15 ~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~- 92 (1396)
.......|++.|.++++.+++| |+++.++||||||+++++.+.. .......+.++++++||++|+.|....+..+.
T Consensus 26 ~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~--~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~ 103 (212)
T d1qdea_ 26 FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ--RIDTSVKAPQALMLAPTRELALQIQKVVMALAF 103 (212)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH--HCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH--HHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 987999999999999999986998774456530100466766676--650367786148970448886666654001222
Q ss_pred --CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf --970889958988656780105874015919995699999957301754365359999343101378809999999997
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 --~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~ 170 (1396)
...+....|+.... .......+++|+|+||+.+.+.+..+.+.++++.++|+||||.+.+..-.. .+...+.
T Consensus 104 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~-~v~~I~~ 177 (212)
T d1qdea_ 104 HMDIKVHACIGGTSFV-----EDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKE-QIYQIFT 177 (212)
T ss_dssp TSCCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHH-HHHHHHH
T ss_pred CCCCCEEEEEECCCHH-----HHHHHHCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEHHHHHHCCCCHHH-HHHHHHH
T ss_conf 3321113675326616-----799984699199979975522234673536864077530244531444399-9999998
Q ss_pred HHCCCCCCCCCEEEEEECCCCC
Q ss_conf 3203899999919998134777
Q 000607 171 RLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.. ....+++++|||...
T Consensus 178 ~~-----~~~~Q~vl~SAT~~~ 194 (212)
T d1qdea_ 178 LL-----PPTTQVVLLSATMPN 194 (212)
T ss_dssp HS-----CTTCEEEEEESSCCH
T ss_pred HC-----CCCCEEEEEEEECCH
T ss_conf 58-----988869999861898
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=9.9e-21 Score=149.23 Aligned_cols=160 Identities=15% Similarity=0.096 Sum_probs=110.8
Q ss_pred CCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE
Q ss_conf 8621219999999998608-989994798128999999999999994699994899992885318999999987169708
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKV 96 (1396)
Q Consensus 18 ~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v 96 (1396)
+...+|+||.++++.+++| |+++++|||+|||+++.+++.. ..+++++++|+++|+.|+.+.++..... .
T Consensus 22 g~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~--------~~~~~~~v~P~~~L~~q~~~~l~~~~~~-~ 92 (206)
T d1oywa2 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--------LNGLTVVVSPLISLMKDQVDQLQANGVA-A 92 (206)
T ss_dssp CCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--------SSSEEEEECSCHHHHHHHHHHHHHTTCC-E
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH--------CCCCEEEECCCHHHHHHHHHHHHHHCCC-C
T ss_conf 999999899999999986998899867889975231202554--------2672478626406666689999763566-5
Q ss_pred EEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC-HHH---HHHHHHHHH
Q ss_conf 8995898865678010587401591999569999995730175436535999934310137880-999---999999732
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQ-YAC---IMTEFYHRL 172 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~-y~~---im~~f~~~~ 172 (1396)
....+...................+|+++|++.+.....+.......+.++|+||||++..... +.. .+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~-- 170 (206)
T d1oywa2 93 ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ-- 170 (206)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHCHHHCCCCHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH--
T ss_conf 322111124520567788762884699970301100010242210022243000125650226650899999999997--
Q ss_pred CCCCCCCCCEEEEEECCCCC
Q ss_conf 03899999919998134777
Q 000607 173 LETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~ 192 (1396)
. ....+++|||||+..
T Consensus 171 ---~-~~~~~ii~lSATl~~ 186 (206)
T d1oywa2 171 ---R-FPTLPFMALTATADD 186 (206)
T ss_dssp ---H-CTTSCEEEEESCCCH
T ss_pred ---H-CCCCCEEEEEECCCH
T ss_conf ---5-899835999948997
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=4.2e-19 Score=138.58 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=129.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH-
Q ss_conf 55798621219999999998608-9899947981289999999999999946999948999928853189999999871-
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH- 91 (1396)
Q Consensus 14 ~~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~- 91 (1396)
........|++.|.+++..+++| |+++.++||+|||+++++.+.. .......+.++++++|+..++.|........
T Consensus 16 L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (206)
T d1s2ma1 16 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE--KVKPKLNKIQALIMVPTRELALQTSQVVRTLG 93 (206)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHH--HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCC--CCCCCCCCCCCEEECCCHHHHHHHHHHHHHCC
T ss_conf 9987999999999999999986998898658762144443033110--02322234432032351121133544333204
Q ss_pred --CCCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf --697088995898865678010587401591999569999995730175436535999934310137880999999999
Q 000607 92 --TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 92 --~~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~ 169 (1396)
.++++...+|+.... .........++|+|+||+.|.+.+..+.+.++++.++|+||||++.+. .+...+...+
T Consensus 94 ~~~~~~~~~~~g~~~~~----~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~-~f~~~v~~I~ 168 (206)
T d1s2ma1 94 KHCGISCMVTTGGTNLR----DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIEQIL 168 (206)
T ss_dssp TTTTCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH-HHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHH----HHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECHHHHHHH-HHHHHHHHHH
T ss_conf 44670688523763014----677775256549998975333334321010122207776221344300-2477999999
Q ss_pred HHHCCCCCCCCCEEEEEECCCC
Q ss_conf 7320389999991999813477
Q 000607 170 HRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
.. .....+++++|||..
T Consensus 169 ~~-----l~~~~Q~il~SATl~ 185 (206)
T d1s2ma1 169 SF-----LPPTHQSLLFSATFP 185 (206)
T ss_dssp TT-----SCSSCEEEEEESCCC
T ss_pred HH-----CCCCCEEEEEEEECC
T ss_conf 86-----898888999987388
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.81 E-value=1.1e-19 Score=142.47 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=110.9
Q ss_pred CCCCHHHHHHHHHHHHC---------C-CEEEEECCCCHHHHHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCHHHHHH
Q ss_conf 62121999999999860---------8-9899947981289999999999999946--9999489999288531899999
Q 000607 19 LPFARNYQLEALENALK---------Q-NTIVFLETGSGKTLIAIMLLRSYAYLLR--KPSPFVAVFLVPKVVLVPQQAE 86 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~---------~-n~Ii~~~TGsGKT~iailli~~l~~~~~--~~~~k~~liLvPt~~Lv~Q~~~ 86 (1396)
...+|+||.+++..+.+ + ++|+++++|+|||++++.++..+..... .+..++++|+||. .|+.||.+
T Consensus 53 ~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHH
T ss_conf 01020999999999999877354126874698747878899999999999998460116887737998050-45578999
Q ss_pred HHHHHCC--CEEEEEECCCCCCCCCCCCHHHH------HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9987169--70889958988656780105874------015919995699999957301754365359999343101378
Q 000607 87 AIKMHTD--LKVGKYWGDMGVDFWDGATWKEE------MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 87 ~i~~~~~--l~v~~~~G~~~~~~~~~~~~~~~------~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~ 158 (1396)
++.++++ ..+..++|+..... . ...... ....+|+++|++.+..... .+...+++++|+||||++.+.
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~ 207 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEI-D-SKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS 207 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHH-H-HHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHCCCCEEEEEEECCHHHHH-H-HHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--CCCCCCEEEEECCCCCCCCCC
T ss_conf 88763577525999968627778-8-8998765303766661399986123222200--033421145411423220132
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 8099999999973203899999919998134777989
Q 000607 159 HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKV 195 (1396)
Q Consensus 159 ~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~ 195 (1396)
.+-......-. ..+++++|||||+.++.
T Consensus 208 ~s~~~~a~~~l---------~~~~rllLTGTPi~N~~ 235 (298)
T d1z3ix2 208 DNQTYLALNSM---------NAQRRVLISGTPIQNDL 235 (298)
T ss_dssp CHHHHHHHHHH---------CCSEEEEECSSCSGGGG
T ss_pred CCHHHHHHHCC---------CCCEEEEECCHHHHHHH
T ss_conf 20345644213---------41125652260776666
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=2e-18 Score=134.10 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=108.0
Q ss_pred CCCCCCHHHHHHHHHHHHC-----CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9862121999999999860-----89899947981289999999999999946999948999928853189999999871
Q 000607 17 DTLPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 17 ~~~~~~R~yQ~e~~e~al~-----~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~ 91 (1396)
.....+|+||.+++..+.. .++|+++++|+|||++++.++.++.. .....+++++||. .++.||.+++.++
T Consensus 8 ~~~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~---~~~~~~~LIv~p~-~l~~~W~~e~~~~ 83 (230)
T d1z63a1 8 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK---ENELTPSLVICPL-SVLKNWEEELSKF 83 (230)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH---TTCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH---CCCCCCCCEECCH-HHHHHHHHHHHHH
T ss_conf 65045069999999999986216998799858998869999873554421---2355644110535-5426777777764
Q ss_pred CC-CEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 69-70889958988656780105874015919995699999957301754365359999343101378809999999997
Q 000607 92 TD-LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 92 ~~-l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~ 170 (1396)
.. ..+..+.+... . ....+.+|+++|++.+.+.-. +.--.+.++|+||||++.+.......+ ..
T Consensus 84 ~~~~~~~~~~~~~~-~--------~~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~s~~~~~--~~- 148 (230)
T d1z63a1 84 APHLRFAVFHEDRS-K--------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKA--VK- 148 (230)
T ss_dssp CTTSCEEECSSSTT-S--------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHH--HH-
T ss_pred CCCCCCEEECCCCC-H--------HHCCCCCEEEEEHHHHHHHHH---HHCCCCEEEEEEHHHCCCCCCHHHHHH--HH-
T ss_conf 02544101014210-0--------002576889854999986888---741651399997100344322055666--54-
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 320389999991999813477798
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
. ....++++|||||+.++
T Consensus 149 ~------l~a~~r~~LTgTPi~n~ 166 (230)
T d1z63a1 149 E------LKSKYRIALTGTPIENK 166 (230)
T ss_dssp T------SCEEEEEEECSSCSTTC
T ss_pred H------HCCCEEEEEECCHHHHH
T ss_conf 4------04655799725267767
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.78 E-value=4e-20 Score=145.24 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64113455577767999999998499999217999999920916899999983981577308935778787768654320
Q 000607 1185 CYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKL 1264 (1396)
Q Consensus 1185 ~yerLefLGDavL~~~v~~~l~~~~p~~~~~~L~~lrs~lv~n~~la~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~ 1264 (1396)
|...|||||||||+++++.|+|.++| .+||.||.+|+++|||.+||.++.++++++++.......... .+
T Consensus 7 ~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~---------Gr 76 (127)
T d1u61a_ 7 NSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRR---------GR 76 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHH---------HT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCC---------CC
T ss_conf 84778987899999999999997189-990179999999924999999999907677764033431016---------77
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHC
Q ss_conf 16988776544689714678999976502550698869999976310
Q 000607 1265 SLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPL 1311 (1396)
Q Consensus 1265 ~~~~~~~~~~~~~~~k~l~D~~EA~iGAi~~D~g~~~~~~~~~~~~~ 1311 (1396)
..............++.+||+|||+|||+|+|+|+ +++++++.+.
T Consensus 77 n~~~~~~~k~~~~~~y~lad~fEAliGalYLd~~~--e~~~~~i~~~ 121 (127)
T d1u61a_ 77 NANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNR--ERLDEIVYKA 121 (127)
T ss_dssp CCCSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHH
T ss_conf 55477777666514777605999999999991888--9999999999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=4e-19 Score=138.66 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHC----C---CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 8763345579862121999999999860----8---98999479812899999999999999469999489999288531
Q 000607 8 SDTTEEVSADTLPFARNYQLEALENALK----Q---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 8 ~~~~~~~~~~~~~~~R~yQ~e~~e~al~----~---n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~L 80 (1396)
....+.......+.+.+-|.++++.+.+ + +.++..+||||||.+|+.++..... .++.+++++||..|
T Consensus 70 ~~l~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~-----~g~q~~~m~Pt~~L 144 (264)
T d1gm5a3 70 GKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-----AGFQTAFMVPTSIL 144 (264)
T ss_dssp THHHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-----HTSCEEEECSCHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-----CCCCEEEEEEHHHH
T ss_conf 5999998840046678037888999998762367531566635355665999999999885-----13550587404766
Q ss_pred HHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCHHHHHC-CCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 899999998716---97088995898865678010587401-59199956999999573017543653599993431013
Q 000607 81 VPQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 81 v~Q~~~~i~~~~---~l~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~ 156 (1396)
+.|+++.+++++ +.++..++|..... .....|..... ..+|+|+|...+.+. +.+.+++++|+||-|+..
T Consensus 145 a~Qh~~~~~~~f~~~~~~v~~l~~~~~~~-~r~~~~~~~~~g~~~iiIGThsl~~~~-----~~f~~LglviiDEqH~fg 218 (264)
T d1gm5a3 145 AIQHYRRTVESFSKFNIHVALLIGATTPS-EKEKIKSGLRNGQIDVVIGTHALIQED-----VHFKNLGLVIIDEQHRFG 218 (264)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHH-HHHHHHHHHHSSCCCEEEECTTHHHHC-----CCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCHH-HHHHHHHHHHCCCCCEEEEEHHHHCCC-----CCCCCCCEEEECCCCCCC
T ss_conf 57899999886201231211101101369-999999999779979999653885489-----874556225632421002
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 7880999999999732038999999199981347779
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 157 ~~~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
-.. + ..+. .....+.++.|||||+.+
T Consensus 219 v~Q------r----~~l~-~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 219 VKQ------R----EALM-NKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp --------------CCCC-SSSSCCCEEEEESSCCCH
T ss_pred HHH------H----HHHH-HHCCCCCEEEEECCCCHH
T ss_conf 434------7----9999-718699989997988999
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.77 E-value=4.6e-18 Score=131.72 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=120.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC-
Q ss_conf 5798621219999999998608-98999479812899999999999999469999489999288531899999998716-
Q 000607 15 SADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 15 ~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~- 92 (1396)
.......|++.|.++++.+++| |+++.+|||||||+++++++.+. ..........++++|+..++.|.+..+....
T Consensus 17 ~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (209)
T d1q0ua_ 17 KTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK--IKPERAEVQAVITAPTRELATQIYHETLKITK 94 (209)
T ss_dssp HHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHH--CCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9879999999999999999879976866244421331444310012--45444444422223333214778888876412
Q ss_pred ------CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf ------97088995898865678010587401591999569999995730175436535999934310137880999999
Q 000607 93 ------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 93 ------~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~ 166 (1396)
...+....|..... ..-.....+++|+|+||+.+.+.+.+....++++.++|+||||++.+.. +...+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~-f~~~v~ 169 (209)
T d1q0ua_ 95 FCPKDRMIVARCLIGGTDKQ----KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG-FITDVD 169 (209)
T ss_dssp TSCGGGCCCEEEECCCSHHH----HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT-CHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHH----HHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC-CHHHHH
T ss_conf 23334321100025620367----7888746675499834710122332101344553389996023011314-099999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 99973203899999919998134777
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..... ..+..+++++|||...
T Consensus 170 ~I~~~-----~~~~~Q~il~SATl~~ 190 (209)
T d1q0ua_ 170 QIAAR-----MPKDLQMLVFSATIPE 190 (209)
T ss_dssp HHHHT-----SCTTCEEEEEESCCCG
T ss_pred HHHHH-----CCCCCEEEEEECCCCH
T ss_conf 99997-----8998879999721998
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.77 E-value=2.8e-17 Score=126.62 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 86289999999995302899903999963078899999999733587899613588158997677898899999999835
Q 000607 367 LLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446 (1396)
Q Consensus 367 ~~s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~ 446 (1396)
..|.|+..|.++|.......+.|+|||++++.+...+.+.|... ++.+..++|. ++.++|..++++|++
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~-----g~~~~~l~G~------~~~~~R~~~i~~F~~ 166 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGT------MSIKKRAKIVERFNN 166 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSS------CCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH-----HCCCCCCCCC------HHHHHHHHHHHHHHC
T ss_conf 01789999999999988751895168863014567999997630-----0241101110------027889999986510
Q ss_pred CCE---EEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCC----CEEEEEECCCC
Q ss_conf 981---299980345455578753589993799857789986401367898----09999965994
Q 000607 447 GLV---NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDS 505 (1396)
Q Consensus 447 g~~---niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~ 505 (1396)
+.. -+|++|.++++|+|++.++.||.||++||+..+.|+.||+.|.|+ .++.|+..+..
T Consensus 167 ~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~Ti 232 (346)
T d1z3ix1 167 PSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 232 (346)
T ss_dssp TTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred CCCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCH
T ss_conf 234330254033144433565643079994578861558676333403489984389998738989
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=6.1e-19 Score=137.47 Aligned_cols=116 Identities=27% Similarity=0.380 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
+.|+..|.+++..+ .+.++||||+++.++..|.+.|. +..++|. ++..+|++++++|++|+
T Consensus 78 ~~K~~~l~~ll~~~---~~~k~lvf~~~~~~~~~l~~~l~----------~~~i~g~------~~~~~R~~~l~~F~~~~ 138 (200)
T d2fwra1 78 KNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFL----------IPAITHR------TSREEREEILEGFRTGR 138 (200)
T ss_dssp SHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSS------SCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHCC----------CCEEECC------CCHHHHHHHHHHHHCCC
T ss_conf 88999999999967---79807999475999999876338----------5525579------99999999998863487
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCC-----CEEEEEECC
Q ss_conf 1299980345455578753589993799857789986401367898-----099999659
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS-----DYLLMVKSG 503 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs-----~~i~lv~~~ 503 (1396)
+++||+|+++++|+|+|.|++||.||+|||+..|+|+.||++|.|. .++.|+.++
T Consensus 139 ~~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 139 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 035430210210257998888999679979999999987448799998679999995299
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.2e-18 Score=130.86 Aligned_cols=166 Identities=18% Similarity=0.124 Sum_probs=121.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-----C--CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 898763345579862121999999999860-----8--989994798128999999999999994699994899992885
Q 000607 6 MESDTTEEVSADTLPFARNYQLEALENALK-----Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKV 78 (1396)
Q Consensus 6 ~~~~~~~~~~~~~~~~~R~yQ~e~~e~al~-----~--n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~ 78 (1396)
.+.+..+.......+.+.+=|..+++.+.+ . +.+++.+||||||.+|+.++..... .++.+++++||.
T Consensus 40 ~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~-----~g~qv~~l~Pt~ 114 (233)
T d2eyqa3 40 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVLVPTT 114 (233)
T ss_dssp CCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEECCHH
T ss_conf 987999766640011346048889999999985457667089838887728999999999997-----689569974688
Q ss_pred CCHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCHHHHHC-CCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 31899999998716---97088995898865678010587401-591999569999995730175436535999934310
Q 000607 79 VLVPQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH 154 (1396)
Q Consensus 79 ~Lv~Q~~~~i~~~~---~l~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~ 154 (1396)
.|+.|+++.+++.+ +.++..++|...... ....|..... ..+|+|+|...+.+ ++.+.++.|||+||-|+
T Consensus 115 ~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~~~g~~~iviGths~l~~-----~~~f~~LgLiIiDEeH~ 188 (233)
T d2eyqa3 115 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLLQS-----DVKFKDLGLLIVDEEHR 188 (233)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHHHS-----CCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCEEEEEHHHHCC-----CCCCCCCCCEEEECHHH
T ss_conf 76799999999987247977976357653126-9999999967997889742023306-----77655546302223123
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 137880999999999732038999999199981347779
Q 000607 155 ARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 155 ~~~~~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
..- .+...--.+ ...+.++.+||||+..
T Consensus 189 fg~----kQ~~~l~~~-------~~~~~~l~~SATPipr 216 (233)
T d2eyqa3 189 FGV----RHKERIKAM-------RANVDILTLTATPIPR 216 (233)
T ss_dssp SCH----HHHHHHHHH-------HTTSEEEEEESSCCCH
T ss_pred HHH----HHHHHHHHH-------CCCCCEEEEECCHHHH
T ss_conf 325----789999961-------8899889996551099
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.76 E-value=3.5e-19 Score=139.10 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48812466444468878999999985398992200698864024199999889669744312234578985579999998
Q 000607 993 DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGS 1072 (1396)
Q Consensus 993 ~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~ 1072 (1396)
..|...|||||||||+++++.|+|..+| .+||.||..|+.+|+|.+|++++.+.+++.|+.......-+|-.... .
T Consensus 5 ~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~~---~ 80 (127)
T d1u61a_ 5 QLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNAN---S 80 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCC---S
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC---C
T ss_conf 4484778987899999999999997189-99017999999992499999999990767776403343101677554---7
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 766764446786422246101156124679999999976059816799877421
Q 000607 1073 YELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1073 ~~~~~~~~~~~~~~~~~~~~~~~~k~~AD~vEAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
.. .........+.+||++||+|||+|+|+|.+.+..++.+.
T Consensus 81 ----~~---------~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~ 121 (127)
T d1u61a_ 81 ----GT---------VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 121 (127)
T ss_dssp ----SC---------CCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CC---------CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----77---------776665147776059999999999918889999999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.74 E-value=1.3e-17 Score=128.68 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=89.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 98999479812899999999999999469999489999288531899999998716970889958988656780105874
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
..|+.+|||+|||+++...+. ..++++++++|++.|+.||++.+.+..+...+...++....
T Consensus 10 ~~ll~apTGsGKT~~~~~~~~--------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAYA--------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTIT---------- 71 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHHH--------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC----------
T ss_pred EEEEEECCCCCHHHHHHHHHH--------HCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------
T ss_conf 899996887799999999999--------86993999767699999999999998520246430012211----------
Q ss_pred HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 01591999569999995730175436535999934310137880999999999732038999999199981347
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
....+.++|++.+..... ..+++++++|+||||++... .+.. +....... ......+++||||||
T Consensus 72 -~~~~~~~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~-~~~~-~~~~l~~~---~~~~~~~~l~~TATP 136 (136)
T d1a1va1 72 -TGSPITYSTYGKFLADGG---CSGGAYDIIICDECHSTDAT-SILG-IGTVLDQA---ETAGARLVVLATATP 136 (136)
T ss_dssp -CCCSEEEEEHHHHHHTTG---GGGCCCSEEEEETTTCCSHH-HHHH-HHHHHHHT---TTTTCSEEEEEESSC
T ss_pred -CCCCEEEEEEEEECCCCC---HHHHCCCEEEEECCCCCCHH-HHHH-HHHHHHHH---HHCCCCCEEEEECCC
T ss_conf -344227886410002353---02415999998255535887-8999-99999999---877997299992799
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.68 E-value=3.4e-17 Score=126.03 Aligned_cols=132 Identities=18% Similarity=0.127 Sum_probs=86.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH
Q ss_conf 89899947981289999999999999946999948999928853189999999871697088995898865678010587
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++.+|||+|||++++..+...... .++++++++|++.++.|+.+.+... .+....+... ..
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~~~~~----~~~~vli~~p~~~l~~q~~~~~~~~---~~~~~~~~~~---------~~ 71 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL---DVKFHTQAFS---------AH 71 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS---CEEEESSCCC---------CC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHH---HHHHCCCCCC---------CC
T ss_conf 967998179988559999999997531----3851565312106889999875324---3220112000---------12
Q ss_pred HHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 40159199956999999573017543653599993431013788099-99999997320389999991999813477
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA-CIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~-~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
......+.++|.+.+..... ....+.+++++|+||||++..+.... ..+..+.. ....++++|||||.
T Consensus 72 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-------~~~~~~l~lTATPp 140 (140)
T d1yksa1 72 GSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-------ANESATILMTATPP 140 (140)
T ss_dssp CCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-------TTSCEEEEECSSCT
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-------CCCCCEEEEECCCC
T ss_conf 23333002426999999984-16654642089975433467543999999999825-------79999899982999
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=5e-16 Score=118.37 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 62899999999953028999039999630788999999997335878996135881589976778988999999998359
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g 447 (1396)
.|+|+..|.+++.+.. .++.++||||+.+.+.+.+...+... .+..+..++|. ++..+|++++++|+++
T Consensus 67 ~S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~i~G~------~~~~~R~~~i~~F~~~ 135 (244)
T d1z5za1 67 RSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGE------LSKKERDDIISKFQNN 135 (244)
T ss_dssp TCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH----HCSCCCEECTT------SCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHC-CCCCCEEEEEECEEHHHHHHHHHHHH----CCCEEEEEECC------CCHHCCCHHHHHHHCC
T ss_conf 2068999999887641-46662599960100677899998761----35128999666------4200011045544301
Q ss_pred C-EEEEE-EECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCC----CEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8-12999-80345455578753589993799857789986401367898----099999659943399999999988989
Q 000607 448 L-VNVIV-ATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDSTTQSRLENYLASGNKM 521 (1396)
Q Consensus 448 ~-~niLV-aT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~~~~~i~~~~~~E~~m 521 (1396)
. ..+|+ +|.++++|+|++.|+.||.||++||+..+.|+.||+.|.|+ .++.++..+.. .+.+.+.......+
T Consensus 136 ~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Ti--ee~i~~~~~~K~~~ 213 (244)
T d1z5za1 136 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL--EEKIDQLLAFKRSL 213 (244)
T ss_dssp TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH--HHHHHHHHHHCHHH
T ss_pred CCCHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCEEEEEEEECCCH--HHHHHHHHHHHHHH
T ss_conf 2100101431123566211200143204712446777654250156499972599998618999--99999999999999
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.2e-15 Score=114.18 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 99903999963078899999999733587899613588158997677898899999999835981299980345455578
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDV 464 (1396)
Q Consensus 385 ~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~~niLVaT~v~eeGIDI 464 (1396)
..+.++.+.|+.......+...+++..| .+++..+||. |+..++++++.+|++|+++|||||.|.|.||||
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p---~~~i~~lHGk------m~~~eke~im~~F~~g~~~ILv~TtvIEvGiDv 99 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVP---EARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDI 99 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCT---TSCEEECCSS------CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHHCC---CEEEEEEEEC------CCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCC
T ss_conf 8699599997175212668888887477---3379999722------688889999999982986268875534404689
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCC--CCEEEEEEC
Q ss_conf 7535899937998-5778998640136789--809999965
Q 000607 465 QSCNLVIMFDPSR-TVCSFIQSRGRARMQN--SDYLLMVKS 502 (1396)
Q Consensus 465 p~~~~VI~fD~p~-s~~~yiQr~GRA~R~g--s~~i~lv~~ 502 (1396)
|+++++|..+... -+.++.|.+||++|.+ |.|+++.+.
T Consensus 100 pnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 100 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred CCCCEEEEECCHHCCCCCCCCCCCEEEECCCCCEEEEEECC
T ss_conf 98769987130003311222302335536766548998568
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=7.6e-16 Score=117.16 Aligned_cols=111 Identities=19% Similarity=0.289 Sum_probs=86.6
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCC---CC----------------------CEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 99039999630788999999997335878---99----------------------613588158997677898899999
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRH---CT----------------------WKTKYIAGNNSGIQCQSRKKQNEI 440 (1396)
Q Consensus 386 ~~~~~IIFv~~r~ta~~L~~~L~~~~p~~---~~----------------------~~~~~i~G~~~~~~~m~~~~r~~~ 440 (1396)
++.++||||++|..+..++..|....... .. ..+++.||+ |++.+|..+
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~------l~~~~r~~i 112 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG------LLNGQRRVV 112 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT------SCHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHH
T ss_conf 69968999689999999999999988753022578999887512355699999985117888777------625668999
Q ss_pred HHHHHCCCEEEEEEECCCCCCCCCCCCCEEEE-------ECCCCCHHHHHHHHHCCCCCC----CCEEEEEEC
Q ss_conf 99983598129998034545557875358999-------379985778998640136789----809999965
Q 000607 441 VEEFRRGLVNVIVATSILEEGLDVQSCNLVIM-------FDPSRTVCSFIQSRGRARMQN----SDYLLMVKS 502 (1396)
Q Consensus 441 l~~Fr~g~~niLVaT~v~eeGIDIp~~~~VI~-------fD~p~s~~~yiQr~GRA~R~g----s~~i~lv~~ 502 (1396)
.+.|++|.+++||||+++++|||+|+.++||. ++.|.+..+|+|+.|||||.| |.++++...
T Consensus 113 e~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~ 185 (201)
T d2p6ra4 113 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 185 (201)
T ss_dssp HHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHCCCCEEEEECHHHHHHCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECC
T ss_conf 9998679814997041887523799746999514204687477999999987544689999972599999689
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.64 E-value=3.1e-16 Score=119.74 Aligned_cols=100 Identities=21% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 99039999630788999999997335878996135881589976778988999999998359812999803454555787
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~~niLVaT~v~eeGIDIp 465 (1396)
++.++||||+++..++.|+..|+.. ++++..+||. |+. +.|++|+.++||||+++++||| |
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~-----G~~~~~~H~~------~~~-------~~~~~~~~~vlvaTd~~~~GiD-~ 94 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVAL-----GINAVAYYRG------LDV-------SVIPTNGDVVVVATDALMTGFT-G 94 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHH-----TCEEEEECTT------CCS-------CCCTTSSCEEEEESSSSCSSSC-C
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCC-----CCCHHHHHCC------CHH-------HHHHHHHCCEEEHHHHHHHCCC-C
T ss_conf 8998999909589999999998352-----6320334235------305-------4432331121410688870254-3
Q ss_pred CCCEEEEEC----CCCCHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 535899937----998577899864013678980999996599
Q 000607 466 SCNLVIMFD----PSRTVCSFIQSRGRARMQNSDYLLMVKSGD 504 (1396)
Q Consensus 466 ~~~~VI~fD----~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~ 504 (1396)
+++.||++| +|.+..+|+||.|||+|.....+.++.+++
T Consensus 95 ~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gRg~~G~~~~i~~~e 137 (138)
T d1jr6a_ 95 DFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 137 (138)
T ss_dssp CBSEEEECSEETTEECCHHHHHHHHTTBCSSSCEEEEECCSSC
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 3461777776477999999998686230489982899973799
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=3.2e-17 Score=126.18 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECHHHHHHH--------HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999953028999039999630788999--------9999973358789961358815899767789889999999
Q 000607 371 KIVCLIESLLEYRGVEDIRCIIFVERVITAIV--------LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVE 442 (1396)
Q Consensus 371 K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~--------L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~ 442 (1396)
+...+.+.+... -..+.++.+.|+.+..... ....|.+. .++++++..+||. |++.+++++++
T Consensus 14 ~~~~v~~~I~~e-l~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~--~~p~~~v~~lHG~------m~~~eke~~m~ 84 (206)
T d1gm5a4 14 RVNEVYEFVRQE-VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE--VFPEFKLGLMHGR------LSQEEKDRVML 84 (206)
T ss_dssp THHHHHHHHHHH-TTTSCCBCCBCCCC--------CHHHHHHHSGGGS--CC---CBCCCCSS------SCCSCSHHHHH
T ss_pred CHHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEEEEC------CCHHHHHHHHH
T ss_conf 299999999999-97499889997514455321101367899999985--0899728898603------65999999999
Q ss_pred HHHCCCEEEEEEECCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHHCCCCCC--CCEEEEEECCCCCHHHHHH
Q ss_conf 98359812999803454555787535899937998-5778998640136789--8099999659943399999
Q 000607 443 EFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 443 ~Fr~g~~niLVaT~v~eeGIDIp~~~~VI~fD~p~-s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i~ 512 (1396)
+|++|+++|||||+|+|.|||||++++||.++.|. ...++.|.+||++|.+ |.+++++.+.+....++++
T Consensus 85 ~F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~ 157 (206)
T d1gm5a4 85 EFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 157 (206)
T ss_dssp HHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred HHHCCCEEEEEEEHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHEEECCCCCEEEEEECCCCCCCHHHHH
T ss_conf 9977987899970243104552678489998048863778876520212121254057652243221113444
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=1.1e-17 Score=129.28 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
..|+..|.++|..+ +.++||||+++.++..++..|+. . +||. |++.+|.+++++|++|+
T Consensus 11 ~~~~~~l~~~l~~~----~~~~iif~~~~~~~~~l~~~l~~------~-----~hg~------~~~~~R~~~~~~f~~g~ 69 (248)
T d1gkub2 11 DESISTLSSILEKL----GTGGIIYARTGEEAEEIYESLKN------K-----FRIG------IVTATKKGDYEKFVEGE 69 (248)
T ss_dssp CCCTTTTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTT------S-----SCEE------ECTTSSSHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHHHH------H-----CCCC------CCHHHHHHHHHHHHHCC
T ss_conf 36899999999983----97989998987899999999987------3-----4378------99999999999998279
Q ss_pred EEEEEEE----CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 1299980----34545557875-3589993799857789986401367898
Q 000607 449 VNVIVAT----SILEEGLDVQS-CNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 449 ~niLVaT----~v~eeGIDIp~-~~~VI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
+++|||| +++++|||+|. +++||+||+|+ |+|+.||++|.|.
T Consensus 70 ~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~ 116 (248)
T d1gkub2 70 IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116 (248)
T ss_dssp CSEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCH
T ss_pred CEEEEEECCCCCHHHHCCCCCCCCCEEEEECCCC----CHHHHHHHHCCCC
T ss_conf 8599996666024651367665401899967974----0000545631674
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.59 E-value=8.6e-16 Score=116.80 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=86.8
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHH----------HHHHHHHHCCCEEEEEEE
Q ss_conf 9903999963078899999999733587899613588158997677898899----------999999835981299980
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQ----------NEIVEEFRRGLVNVIVAT 455 (1396)
Q Consensus 386 ~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r----------~~~l~~Fr~g~~niLVaT 455 (1396)
++.++||||++|..++.++..|+.. ++++..+||.. ++..+ .++++.|+.|+.+++|+|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~-----Gi~a~~~Hggl------sq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT 103 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVAL-----GINAVAYYRGL------DVSVIPTSGDVVVVATDALMTGFTGDFDSVIDC 103 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTS------CGGGSCSSSSEEEEECTTC---CCCCBSEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHC-----CCCEEEEECCC------HHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6998999879689999999999777-----98789975894------077787312057778999998865998389998
Q ss_pred CCCCC---CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCEEEEE
Q ss_conf 34545---557875358999379985778998640136789-8099999
Q 000607 456 SILEE---GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMV 500 (1396)
Q Consensus 456 ~v~ee---GIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv 500 (1396)
+++++ |+|++.+.+||+||.|.|..+|+||+||++|.. |.+..+.
T Consensus 104 ~~~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~~l~ 152 (299)
T d1a1va2 104 NTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVA 152 (299)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEEEEESC
T ss_pred EEHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 6201047878878516999689998989987621443799981698971
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.20 E-value=5.8e-11 Score=85.10 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=79.3
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 99039999630788999999997335878996135881589976778988999999998359812999803454555787
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~~niLVaT~v~eeGIDIp 465 (1396)
.+.+++|||.++..+..++..|+.. +.++..+||.. ...+ .++|++|+.++||||+++|.|+||
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~-----g~~V~~l~~~~------~~~e----~~~~~~~~~~~~~~t~~~~~~~~~- 98 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT------FERE----YPTIKQKKPDFILATDIAEMGANL- 98 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS------CC------------CCCSEEEESSSTTCCTTC-
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCC------CHHH----HHHHHCCCCCEEEEECHHHHCEEC-
T ss_conf 5998999949999999999999866-----98099976867------5767----766515776789970036536412-
Q ss_pred CCCEEEE---------ECC----------CCCHHHHHHHHHCCCCCCC--CEEEEEE
Q ss_conf 5358999---------379----------9857789986401367898--0999996
Q 000607 466 SCNLVIM---------FDP----------SRTVCSFIQSRGRARMQNS--DYLLMVK 501 (1396)
Q Consensus 466 ~~~~VI~---------fD~----------p~s~~~yiQr~GRA~R~gs--~~i~lv~ 501 (1396)
++..||. ||. |.+..+..||+||+||.+. .++.+..
T Consensus 99 ~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 99 CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp CCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CCEEEEECCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 733898668500003565878826873242689999986466666678860899938
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.3e-09 Score=76.34 Aligned_cols=69 Identities=20% Similarity=0.092 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCCC-EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 579255999999835998776522205896-0899999999999997886269999999999999999442
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGK-AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1322 ~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~-~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~ 1391 (1396)
..+|++.|+|+||+.+...|.|.+....|+ ..|.|.|.++|..++ .|.|.|||.|++.||+.||+.|..
T Consensus 8 ~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~~~-~g~G~sKK~Aeq~AA~~AL~~L~~ 77 (85)
T d1x47a1 8 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYG-SGTASSKKLAKNKAARATLEILIP 77 (85)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCEEEE-CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9598899999999829999973787547898888999999999974-478412999999999999999988
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=1.3e-09 Score=76.23 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEEEECCEEEEEEEEE-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57925599999983599877652220589608999999999999978862-699999999999999994420
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLD-ADKKTAKKVACKEVLKSLRAS 1392 (1396)
Q Consensus 1322 ~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~g~g-~skk~Ak~~AA~~aL~~L~~~ 1392 (1396)
..+||+.|+||||+.++..|.|.+..++.+..|++.|.++|..++ .+.| .|||+|++.||+.||+.|...
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~~~~-s~~g~~SKK~AEq~AA~~AL~~Lg~~ 95 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQ-STLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEE-ESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCEEEE-CCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 998789999999863999976887622557777799998884765-16774538999999999999983898
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.8e-09 Score=75.31 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=60.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCC---CEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 7664357925599999983599877652220589---608999999999999978862699999999999999994
Q 000607 1317 TPETMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1317 ~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L 1389 (1396)
.+.....||++.|+|+|++.++..|.|.+..+.| ...|+|.|.+++.. + +|.|.|||+|++.||+.||+.|
T Consensus 3 ~~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~-~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 3 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-E-IGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCEE-E-CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 976678897899999999749999979986643267775279999954224-1-1364529999999999999869
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=1.7e-09 Score=75.47 Aligned_cols=65 Identities=26% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCC---CEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 925599999983599877652220589---608999999999999978862699999999999999994
Q 000607 1324 HPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1324 ~p~~~L~e~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L 1389 (1396)
|+|+.|+|+||+.++..|.|.+....| ...|+|.|.++|..++ .|.|+|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~-~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA-TGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEEEE-EEEECCHHHHHHHHHHHHHHHH
T ss_conf 9178999999974999997999996688888429999998999999-9872899999999999999986
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.5e-09 Score=75.92 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC---CEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57925599999983599877652220589---608999999999999978862699999999999999994420
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRAS 1392 (1396)
Q Consensus 1322 ~~~p~~~L~e~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~ 1392 (1396)
..+|++.|+|+||+.++..|.|++..+.| ...|+|.|+++|.. . +|.|.|||+||+.||+.||+.|+..
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~-~g~g~SKK~Ae~~AA~~aL~~l~~~ 76 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-A-TGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEEEE-C-CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8881999999999649999979850244567750699999996564-0-2320378999999999999996766
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=98.90 E-value=2.3e-09 Score=74.59 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 255999999835998776522205896---0899999999999997886269999999999999999442
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1325 p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~ 1391 (1396)
|+++|+|+|++.++..|.|.+..+.|+ +.|+|.|.++|.. . +|.|.|||+|++.||+.||+.|+.
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~-~g~g~sKK~Aeq~AA~~aL~~L~s 69 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-E-TGSGTSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE-E-ECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8389999999759999838999843787774168999986678-7-637672999999999999998459
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8.5e-10 Score=77.44 Aligned_cols=73 Identities=27% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3579255999999835998776522205896---08999999999999978862699999999999999994420999
Q 000607 1321 MRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPG 1395 (1396)
Q Consensus 1321 ~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~~~ 1395 (1396)
.+.++++.|+||||++++. +.|.+....|+ +.|+|.|.++|..++ +|.|.|||+|++.||+.||+.|.+..++
T Consensus 11 ~~~~y~s~LqE~~Qk~~~~-p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~-~g~G~sKK~Aeq~AA~~aL~~L~~~~~~ 86 (90)
T d1qu6a1 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFP-EGEGRSKKEAKNAAAKLAVEILNKEKKA 86 (90)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCC-EEECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCCHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCEEEEEEEECCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9778999999999982999-85799871079887447999997756640-5678769999999999999999830778
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.4e-09 Score=72.80 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79255999999835998776522205896---089999999999999788626999999999999999944209
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1323 ~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~ 1393 (1396)
.+|++.|+|||++.+. .|.|.+..++|+ +.|+|.|.+++. .+ .|.|+|||+|++.||+.||+.|+...
T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~-~g~g~sKK~Aeq~AA~~al~~L~~~~ 72 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TC-TGEGTSKKLAKHRAAEAAINILKANA 72 (73)
T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EE-EECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCEEEEEEEEEEE-EE-EECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 5877999999996798-988998653589887179999999889-98-86146599999999999999987427
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.84 E-value=5.1e-09 Score=72.36 Aligned_cols=65 Identities=22% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9255999999835998776522205896---089999999999999788626999999999999999944
Q 000607 1324 HPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1324 ~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~ 1390 (1396)
|||+.|+||||+.++..|.|.+....|+ +.|+|.|.++|.. + .|.|.|||.|++.||..||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~-~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-T-LGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEE-E-EEECCCHHHHHHHHHHHHHHHHC
T ss_conf 90789999999759999989999841888784799999988779-9-99509999999999999999739
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1.9e-09 Score=75.16 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=61.8
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEECCCC---CEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4357925599999983599877652220589---608999999999999978862699999999999999994420999
Q 000607 1320 TMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPG 1395 (1396)
Q Consensus 1320 ~~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~~~ 1395 (1396)
+.+.+++.+|+|+||++++.+. |.+..+.| .+.|+|.|+++|..++ .|.|.|||+||+.||+.||..|......
T Consensus 4 ~~~~~yk~~L~E~~Qk~~~~~~-y~~~~~~Gp~h~~~F~~~v~v~g~~~~-~g~g~sKK~Aeq~AA~~aL~~L~~~~~~ 80 (85)
T d1x49a1 4 DTPGFYMDKLNKYRQMHGVAIT-YKELSTSGPPHDRRFTFQVLIDEKEFP-EAKGRSKQEARNAAAKLAVDILDNENKV 80 (85)
T ss_dssp CCTTHHHHHHHHHHHHHTCCEE-EEEEEEESCSSSCEEEEEEEESSCCCC-CEEESSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCEEEEEEECCCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9813399999999986699975-899872189887458998841846750-5566559999999999999999871765
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=9e-09 Score=70.71 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 255999999835998776522205896---089999999999999788626999999999999999944209999
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPGT 1396 (1396)
Q Consensus 1325 p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~~~~ 1396 (1396)
.++.|+|+||++++.+. |.... .|+ ..|+|.|.|+|+.++ .|.|.|||+|++.||+.||+.|....|.+
T Consensus 1 Y~s~L~E~~Qk~~~~~~-~~~~~-~G~~h~~~F~~~v~v~~~~~~-~g~G~sKK~Aeq~AA~~Al~~L~~~~~~~ 72 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVN-YEQCE-PNSELPQRFICKCKIGQTMYG-TGSGVTKQEAKQLAAKEAYQKLLKSPPKT 72 (76)
T ss_dssp HHHHHHHHHHHTTCCEE-EEECC-CSSSSSCCEEEEEEESSCEEE-EEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHCCCCC-CCCCC-CCCCCCCCEEEEEEECCEEEC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 94899999998689976-44477-698999758999999999957-85762799999999999999997048877
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=8.3e-09 Score=70.95 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEECCC--CCEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 35792559999998359987765222058--9608999999999999978862699999999999999994420999
Q 000607 1321 MRFHPVRELTEYCQKNHFSMKKPVASRIS--GKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFPG 1395 (1396)
Q Consensus 1321 ~~~~p~~~L~e~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~~~ 1395 (1396)
...||++.|+|+||+++..+. |.....+ +...|.|.|.++|+.++ .|.|.|||+||+.||+.||+.|.....+
T Consensus 12 ~~~n~~s~L~E~~Qk~~~~~~-y~~~~~g~~h~~~F~~~v~i~g~~~~-~g~G~sKK~Akq~AA~~Al~~L~~~~~~ 86 (89)
T d1qu6a2 12 SMGNYIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQKEYS-IGTGSTKQEAKQLAAKLAYLQILSEETG 86 (89)
T ss_dssp CCCCCHHHHHHHHHHSCCEEE-EEEEEECSSSSSEEEEEEEEETTBCC-EEEESSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHCCCCCC-EEEECCCCCCCCCEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 532899999999996288764-26631578788756999998970366-6565269999999999999999703798
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.79 E-value=8.6e-08 Score=64.27 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 62899999999953028999039999630788999999997335878996135881589976778988999999998359
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g 447 (1396)
...|..++++.+... ...+..+||++.++...+.++.+|++. +++...++... . +++..+-...-.
T Consensus 16 ~~eK~~AIi~eV~~~-~~~grPVLIgT~SIe~SE~ls~~L~~~-----gi~h~vLnAk~-------~-~~Ea~II~~Ag~ 81 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQR-YMTGQPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKN-------H-EREAQIIEEAGQ 81 (175)
T ss_dssp HHHHHHHHHHHHHHH-HHHTCCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSC-------H-HHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHC-----CCCCEEEHHHH-------H-HHHHHHHHHCCC
T ss_conf 999999999999999-965998899968199999999999975-----99712210226-------8-998888875137
Q ss_pred CEEEEEEECCCCCCCCCCCC--------CEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEECCC
Q ss_conf 81299980345455578753--------58999379985778998640136789--80999996599
Q 000607 448 LVNVIVATSILEEGLDVQSC--------NLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGD 504 (1396)
Q Consensus 448 ~~niLVaT~v~eeGIDIp~~--------~~VI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~ 504 (1396)
.-.|.|||+++++|.||.-- =+||.-..+.+.+...|.+||++|.| +.+.++++-+|
T Consensus 82 ~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 82 KGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp TTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCEEEHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCCCEEEEECCH
T ss_conf 9816644558870887566388985798589984048526678888423442078745189999087
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=1.4e-08 Score=69.46 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCC--CCEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 792559999998359987765222058--96089999999999999788626999999999999999944209
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRIS--GKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1323 ~~p~~~L~e~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~ 1393 (1396)
.++|+.|+||||+.++. +.|.+...+ ....|+|.|.++|..+.+.|.|.|||+|++.||+.||+.|.+.+
T Consensus 6 ~~~Ks~LqE~~qk~k~~-P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~ 77 (99)
T d1whqa_ 6 SGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CSSHHHHHHHHHHTTCC-CEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCC-CEEEEECCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66889999999868999-8699840247888608999985165431005775288999999999999999859
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=2.8e-08 Score=67.47 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCC--CEEEEEEEEE-----CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7925599999983599877652220589--6089999999-----999999788626999999999999999944209
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISG--KAAVTVEVQA-----NGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1323 ~~p~~~L~e~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~-----~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~ 1393 (1396)
.|||+.|+||||+++.. |.|.+...+. ...|+|+|.+ ++..++ +|.|.|||+|++.||+.||+.|.+.+
T Consensus 26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~-~G~G~sKK~AEq~AA~~~l~~L~~~g 101 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFA-REHGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEE-ECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCC-CCEEEEEECCCCCCEEEEEEEEEEECCCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 47999999999867999-965985542688995999999942125976776-40626099999999999999999748
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.68 E-value=6.1e-09 Score=71.83 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 3579255999999835998776522205896---0899999999999997886269999999999999999442
Q 000607 1321 MRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1321 ~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~ 1391 (1396)
...+|++.|+|+|+++++. +.|.+..+.|+ +.|+|.|.+++.. + .|.|.|||+||+.||+.||+.|++
T Consensus 5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~-~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-T-EGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-E-EECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCEEEEEEEEEEEEE-E-EECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7889899999999967989-708999713798870899999982147-6-605676999999999999999870
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=5.6e-08 Score=65.51 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCC--EEEEEEEEE-CCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 43579255999999835998776522205896--089999999-9999997886269999999999999999442
Q 000607 1320 TMRFHPVRELTEYCQKNHFSMKKPVASRISGK--AAVTVEVQA-NGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1320 ~~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~--~~~~~~v~~-~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~ 1391 (1396)
.+..|+|+.|++||++.+.. |.|++...+|+ ..|.|.|.+ ++..++ .|.|.|||.|++.||+.||+.++.
T Consensus 3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~-~g~g~SKK~AEq~AA~~aL~~~~~ 75 (81)
T d1t4oa_ 3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLG-TGVGRNIKIAGIRAAENALRDKKM 75 (81)
T ss_dssp CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEE-EEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCEEEEEEEECCCEEE-ECCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 55568999999998308998-57997014787889889999996682587-645330108999999999983228
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=2.1e-07 Score=61.75 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 579255999999835998776522205896---08999999999999978862699999999999999994420
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRAS 1392 (1396)
Q Consensus 1322 ~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~ 1392 (1396)
..||++.|+|+|++.. |++....|+ +.|+|.|.++|... .|.|.|||+||+.||+.||+.|.+-
T Consensus 3 ~Knpv~~L~E~~~~~~-----y~~~~~~G~~h~~~F~~~v~v~~~~~--~g~G~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 3 GKNPVMILNELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCSCE-----EEEEECCCCTTTCCEEEEEECSSCEE--EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCE-----EEEEEEECCCCCCEEEEEEEECCEEE--EECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8798999999765986-----89925168998973999999999999--8168988999999999999998746
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.6e-06 Score=55.95 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 579255999999835998776522205896---089999999999999788626999999999999999944209
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1322 ~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~~~ 1393 (1396)
..+|+.+|+|+.+ .+.|.+..+.|+ +.|+|.|.++|..+ .|.|.|||+||+.||+.||+.|+...
T Consensus 11 ~~n~~~~L~e~~~-----~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~--~g~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T d2dmya1 11 LMNALMRLNQIRP-----GLQYKLLSQSGPVHAPVFTMSVDVDGTTY--EASGPSKKTAKLHVAVKVLQAMGYPT 78 (84)
T ss_dssp CTHHHHHHHHHSC-----SCCCEEEEEESCSSSCEEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHCC-----CCEEEEEEEECCCCCCEEEEEEEECCEEE--ECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 4499999987078-----98699977068988975999999999999--85899989999999999999948899
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=3e-05 Score=47.58 Aligned_cols=152 Identities=22% Similarity=0.210 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH---HHHHHHHHCCCEEE
Q ss_conf 121999999999860898999479812899999999999999469999489999288531899---99999871697088
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ---QAEAIKMHTDLKVG 97 (1396)
Q Consensus 21 ~~R~yQ~e~~e~al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q---~~~~i~~~~~l~v~ 97 (1396)
.|++.|.-.--. +..+-|..|.||=|||+++.+++.-. -+ .|+.+-+++..--|+.- |...+-+++|+.|+
T Consensus 80 RhyDVQLiGgi~-L~~G~iaem~TGEGKTL~a~l~a~l~--al---~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg 153 (273)
T d1tf5a3 80 FPFKVQLMGGVA-LHDGNIAEMKTGEGKTLTSTLPVYLN--AL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 153 (273)
T ss_dssp CCCHHHHHHHHH-HHTTSEEECCTTSCHHHHHHHHHHHH--HT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEHHHHHHHHH-HHHHHHEEECCCCCCHHHHHHHHHHH--HH---CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 773047899999-87655302068875103999999999--96---6998569715730033124577679998298734
Q ss_pred EEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHH-HHHHHC------CCCCCCEEEEEEECCCCCCCCC-----------
Q ss_conf 9958988656780105874015919995699999-957301------7543653599993431013788-----------
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLS------YFKLNMIKVLILDECHHARGKH----------- 159 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~------~~~~~~i~liI~DEaH~~~~~~----------- 159 (1396)
....++..+ -....=.+||+.+|..-|- |.|+.. ......+.+.|+||++.+.=+.
T Consensus 154 ~~~~~~~~~------~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~ 227 (273)
T d1tf5a3 154 LNLNSMSKD------EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQS 227 (273)
T ss_dssp ECCTTSCHH------HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CCCCCCCHH------HHHHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHHHHHCCCCCEEECCCC
T ss_conf 565545777------77777607835502555544441143325866645688878999753466253468855853686
Q ss_pred -CHHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf -09999-9999973203899999919998134777
Q 000607 160 -QYACI-MTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 160 -~y~~i-m~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
....| .+.|+. ..+++-|||+|...
T Consensus 228 ~~~a~it~q~~f~--------~y~~l~gmtgta~~ 254 (273)
T d1tf5a3 228 MTLATITFQNYFR--------MYEKLAGMTGTAKT 254 (273)
T ss_dssp EEEEEEEHHHHHT--------TSSEEEEEESCCGG
T ss_pred CCHHHHHHHHHHH--------HHHHHHCCCCCCHH
T ss_conf 4154644999999--------99998577463077
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.12 E-value=9.2e-05 Score=44.39 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 62899999999953028999039999630788999999997335878996135881589976778988999999998359
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g 447 (1396)
...|..++++-+.... ..+..+||.+.++...+.++.+|.+. +++...+.... ..+-.+++. +.|
T Consensus 16 ~~~K~~Avv~ei~~~h-~~GqPVLVGT~SVe~SE~lS~lL~~~-----gi~h~vLNAK~-------herEAeIIA--qAG 80 (219)
T d1nkta4 16 EEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKY-------HEQEATIIA--VAG 80 (219)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSC-------HHHHHHHHH--TTT
T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHH-----CCCHHCCCHHH-------HHHHHHHHH--HCC
T ss_conf 8999999999999999-66998899617599999999999872-----53432241046-------888889999--646
Q ss_pred C-EEEEEEECCCCCCCCCCC----------------------------------------------------CCEEEEEC
Q ss_conf 8-129998034545557875----------------------------------------------------35899937
Q 000607 448 L-VNVIVATSILEEGLDVQS----------------------------------------------------CNLVIMFD 474 (1396)
Q Consensus 448 ~-~niLVaT~v~eeGIDIp~----------------------------------------------------~~~VI~fD 474 (1396)
. -.|-|||+++++|.||.- -=+||-..
T Consensus 81 ~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTE 160 (219)
T d1nkta4 81 RRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTE 160 (219)
T ss_dssp STTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECS
T ss_pred CCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 68837962000478776464686015567776541467312878999999877788899888777777744996798425
Q ss_pred CCCCHHHHHHHHHCCCCCC--CCEEEEEECC
Q ss_conf 9985778998640136789--8099999659
Q 000607 475 PSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 475 ~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
...|.+---|-+||++|.| +...++++-+
T Consensus 161 rHeSrRIDnQLRGRsGRQGDPGsSrFflSLe 191 (219)
T d1nkta4 161 RHESRRIDNQLRGRSGRQGDPGESRFYLSLG 191 (219)
T ss_dssp CCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 5665555533026664568975125677446
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.10 E-value=4e-06 Score=53.36 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 9255999999835998776522205896---0899999999999997886269999999999999999442
Q 000607 1324 HPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1324 ~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak~~AA~~aL~~L~~ 1391 (1396)
.|++.|+++.+.. ..+.|.+..+.|+ ..|+|.|.++|... .|.|.|||+||+.||+.||+.|.+
T Consensus 5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~--~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF--EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEE--EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHCC--CCCEEEEEEEECCCCCCEEEEEEEECCEEE--ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9819999998518--998799987128999964999999999999--918874999999999999999853
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.01 E-value=2.2e-07 Score=61.62 Aligned_cols=84 Identities=10% Similarity=-0.075 Sum_probs=58.1
Q ss_pred CCCCCCCEEECCCCCEEEEEE---EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCCH
Q ss_conf 446668488637489049998---43289998996766888745199899988384313599742752025533333111
Q 000607 831 TCKIHNSLVCTPHNGQIYCIT---GVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSK 907 (1396)
Q Consensus 831 ~~~~~~~~V~~~~~~~~Y~v~---~v~~dl~p~S~~~~~~~~~~ty~~y~~~k~~~~i~~~~qPll~~~~~~~~~n~l~~ 907 (1396)
...+.+.+|++.|+++.|.+. ++.++.||.+.+.. ....+|.+||+.+|++ +.+||||..+.-.+.+
T Consensus 184 ~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~--~~~~s~ieYYk~~Yni---D~~QPlLvs~~k~~~~----- 253 (322)
T d1u04a1 184 PLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYW--NTPEAKLEFYRKFGQV---DLKQPAILAKFASKIK----- 253 (322)
T ss_dssp TTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHCSC---CTTSCEEEEEESCC-------
T ss_pred HHHEECEEEEECCCCCCEECCHHHCCCCCCCCCCEECC--CCCCCHHHHHHHHCCC---CCCCCEEEEECCCCCC-----
T ss_conf 46301649975057866104412027756586622225--8966399999984599---9778559875134567-----
Q ss_pred HHHCCCCCCCCCEEEECCCCCCCC
Q ss_conf 211026899752055063322101
Q 000607 908 CRQQKQKEPSKISFELPPELCRII 931 (1396)
Q Consensus 908 ~~~~~~~~~~~~~~~L~pelC~~~ 931 (1396)
......++|+||||.+.
T Consensus 254 -------~~~~~~i~LiPELc~lT 270 (322)
T d1u04a1 254 -------KNKNYKIYLLPQLVVPT 270 (322)
T ss_dssp ----------CCCEEECTTTEEEE
T ss_pred -------CCCCEEEEECHHHHHHC
T ss_conf -------99840799716765551
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=4.4e-06 Score=53.10 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=58.6
Q ss_pred CCCCEEECCCC---CEEEEEEEECCCCCCCCCCCCCC----CCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCC
Q ss_conf 66848863748---90499984328999899676688----874519989998838431359974275202553333311
Q 000607 834 IHNSLVCTPHN---GQIYCITGVLGHLNANSLFTRNN----GSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS 906 (1396)
Q Consensus 834 ~~~~~V~~~~~---~~~Y~v~~v~~dl~p~S~~~~~~----~~~~ty~~y~~~k~~~~i~~~~qPll~~~~~~~~~n~l~ 906 (1396)
+.+.-|.+.|. .+.|.|.++.++.++.+.|+..+ +...|+.+||+.+|++.+.++++|+|.+..-.
T Consensus 37 Lkgl~V~~~h~~~~~r~y~I~gl~~~~~~~~~F~~~~~~g~~~~iTV~~YFk~~Y~~~L~~p~lP~l~vg~~~------- 109 (126)
T d1si2a_ 37 IKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQ------- 109 (126)
T ss_dssp HTTCEEEECTTTTCCCEEEEEEEEEEETTTCEEECC------CEEEHHHHHHHTSCCCCSCTTSEEEEESCGG-------
T ss_pred HCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEECCCC-------
T ss_conf 3882999955898853699730237888775342015778852788999999871963479998889857899-------
Q ss_pred HHHHCCCCCCCCCEEEECCCCCCC
Q ss_conf 121102689975205506332210
Q 000607 907 KCRQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 907 ~~~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
.-++||+|+|.+
T Consensus 110 ------------k~~~lP~Elc~I 121 (126)
T d1si2a_ 110 ------------KHTYLPLEVCNI 121 (126)
T ss_dssp ------------GCEEEEGGGEEE
T ss_pred ------------CCEEECCEEEEE
T ss_conf ------------986976684595
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=3.5e-05 Score=47.16 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2199999999986089-89994798128999999999999994699994899992885318999999987
Q 000607 22 ARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~R~yQ~e~~e~al~~n-~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~ 90 (1396)
.-+.|.+++..++.++ ++|..+.|+|||.+...++..+.... ..++.++++++||-.-+.+..+.+..
T Consensus 149 ~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~-~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 149 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-SSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 6638999999997088599976898875216999999999987-52698289843759999999988877
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.0001 Score=44.07 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=54.8
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCEEEE--E----CCEEEEEEECCCCCCCCCC---CCCCCHHHHHHHHHHHHHHH
Q ss_conf 8122359999996425999999998538999--1----9829999992899998655---65689999999999999999
Q 000607 555 ATLSSSVSLIYFYCSRLPSDGYFKPTPKFHI--N----KEMGICTLYLPNNCPIQTV---IAQGNIKTLKQAACLEACKK 625 (1396)
Q Consensus 555 l~~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~----~~~~~~~v~LP~~~p~~~~---~~~~~~~~Ak~~aa~~a~~~ 625 (1396)
.+++++.+.|+.||++.- ..|.|.+ . ...|.|+|.++..-.=..+ -.-.|||.|++.||..|+++
T Consensus 23 wt~~n~Ks~LqE~~Qk~k------~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~ 96 (113)
T d1uila_ 23 WTLENAKARLNQYFQKEK------IQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQ 96 (113)
T ss_dssp CCHHHHHHHHHHHHHHSC------CCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCC------CCCCEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 701479999999998679------99965985542688995999999942125976776406260999999999999999
Q ss_pred HHHCCCCC
Q ss_conf 99729899
Q 000607 626 LHQIGALT 633 (1396)
Q Consensus 626 L~~~g~ld 633 (1396)
|++.|.|+
T Consensus 97 L~~~g~i~ 104 (113)
T d1uila_ 97 LYHLGVIE 104 (113)
T ss_dssp HHHHTSSC
T ss_pred HHHCCCCC
T ss_conf 99748867
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.46 E-value=0.00017 Score=42.68 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 21999999999860898999479812899999999999999469999489999288531899999998716
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 22 ~R~yQ~e~~e~al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~ 92 (1396)
+.+=|.++++. ..++++|.++.|||||.+++..+..+...... +..+++++++|+.++....+.+.+..
T Consensus 2 L~~eQ~~av~~-~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 2 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC-CHHHEEEEECCHHHHHHHHHHHHHHC
T ss_conf 69899999819-99998999628843899999999999995699-95578999686999999999999853
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.13 E-value=0.00084 Score=38.10 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 2199999999986089899947981289999999999999946999948999928853189999999871
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 22 ~R~yQ~e~~e~al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~ 91 (1396)
+.+=|.++++. ..+.++|.++.|||||.+++-.+.++..... .+..+++++++++..+......+...
T Consensus 12 L~~eQ~~~v~~-~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~-~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 12 LNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp SCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCHHHEEEEECCHHHHHHHHHHHHHH
T ss_conf 78999999829-9999899952986689999999999998089-98789375766498999899999862
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.80 E-value=0.005 Score=33.02 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHC----C--CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 62121999999999860----8--98999479812899999999999999469999489999288531899999998716
Q 000607 19 LPFARNYQLEALENALK----Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~----~--n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~ 92 (1396)
.+.|-.-|-++++.+.+ | ..++..-||||||++...++... ++.+++|+|+..++.|+++.++.++
T Consensus 9 ~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~--------~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 9 PYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV--------NKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH--------TCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 88999988899999999986599858996778748999999999973--------9998999489999999999999874
Q ss_pred CCEEEEEE
Q ss_conf 97088995
Q 000607 93 DLKVGKYW 100 (1396)
Q Consensus 93 ~l~v~~~~ 100 (1396)
+-+...+.
T Consensus 81 ~~~~v~~f 88 (413)
T d1t5la1 81 PHNAVEYF 88 (413)
T ss_dssp TTSEEEEE
T ss_pred CCCCEEEC
T ss_conf 87745432
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.011 Score=30.85 Aligned_cols=111 Identities=18% Similarity=0.272 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
|.|-......+...- ..+.++++.+.+..-|...+..+++..+. .++.+..++|. ++.+++.++..+.++|+
T Consensus 115 SGKT~Va~~a~~~~~-~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~-~~~~v~~l~~~------~~~~~r~~~~~~~~~g~ 186 (264)
T d1gm5a3 115 SGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSK-FNIHVALLIGA------TTPSEKEKIKSGLRNGQ 186 (264)
T ss_dssp SSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSS------SCHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHH-HCCCCEEEEEEHHHHHHHHHHHHHHHHHH-CCCCCEEECCC------CCHHHHHHHHHHHHCCC
T ss_conf 566599999999988-51355058740476657899999886201-23121110110------13699999999997799
Q ss_pred EEEEEEE-CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 1299980-3454555787535899937998577899864013
Q 000607 449 VNVIVAT-SILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 449 ~niLVaT-~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA 489 (1396)
.+|+|+| +++.+.+.+.+..+||.=.-... .+.||.+-.
T Consensus 187 ~~iiIGThsl~~~~~~f~~LglviiDEqH~f--gv~Qr~~l~ 226 (264)
T d1gm5a3 187 IDVVIGTHALIQEDVHFKNLGLVIIDEQHRF--GVKQREALM 226 (264)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESCCCC-------CCCC
T ss_pred CCEEEEEHHHHCCCCCCCCCCEEEECCCCCC--CHHHHHHHH
T ss_conf 7999965388548987455622563242100--243479999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0087 Score=31.44 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHC----C---C-EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 21999999999860----8---9-89994798128999999999999994699994899992885318999999987169
Q 000607 22 ARNYQLEALENALK----Q---N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 22 ~R~yQ~e~~e~al~----~---n-~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
.+|||.++++...+ + + .+++.|.|+|||..|..+++.+.- ..+.... +. .. ...+..+.....
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~--~~~~~~~-----~~-~~-~~~~~~i~~~~~ 73 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC--QQPQGHK-----SC-GH-CRGCQLMQAGTH 73 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC--SSCBTTB-----CC-SC-SHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCC-----CC-CC-CCHHHHHHHCCC
T ss_conf 871219999999999985996737988899987599999999982101--0123212-----23-34-201556543034
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 70889958988656780105874015919995699999957301754365359999343101378
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 94 l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~ 158 (1396)
..+..+..+........... ..+.+.+.. .-......++|+||+|.+...
T Consensus 74 ~~~~~~~~~~~~~~i~~~~i--------------r~l~~~~~~-~~~~~~~kviIide~d~l~~~ 123 (207)
T d1a5ta2 74 PDYYTLAPEKGKNTLGVDAV--------------REVTEKLNE-HARLGGAKVVWVTDAALLTDA 123 (207)
T ss_dssp TTEEEECCCTTCSSBCHHHH--------------HHHHHHTTS-CCTTSSCEEEEESCGGGBCHH
T ss_pred CCCCHHHHHHCCCCCCCCHH--------------HHHHHHHHH-CCCCCCCCEEEECHHHHHHHH
T ss_conf 31101234313453332114--------------677653211-003576404773134420000
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.011 Score=30.80 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=65.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEE
Q ss_conf 99489999288531899999998716-97088995898865678010587401591999569999995730175436535
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKMHT-DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK 145 (1396)
Q Consensus 67 ~~k~~liLvPt~~Lv~Q~~~~i~~~~-~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~ 145 (1396)
.+.+++|+||.+.-....++.+++.+ +++++.++|.++.+..+....+-.-...+|+|||.=+ .--++..+.+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvI------EvGiDvpnA~ 103 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII------ETGIDIPTAN 103 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT------GGGSCCTTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEHHH------HHCCCCCCCC
T ss_conf 6995999971752126688888874773379999722688889999999982986268875534------4046899876
Q ss_pred EEEEECCCCCCC
Q ss_conf 999934310137
Q 000607 146 VLILDECHHARG 157 (1396)
Q Consensus 146 liI~DEaH~~~~ 157 (1396)
+||+..|+++.-
T Consensus 104 ~iiI~~a~rfGL 115 (211)
T d2eyqa5 104 TIIIERADHFGL 115 (211)
T ss_dssp EEEETTTTSSCH
T ss_pred EEEEECCHHCCC
T ss_conf 998713000331
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.011 Score=30.69 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCEEEE--E----CCEEEEEEECCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2359999996425999999998538999--1----9829999992899998655--656899999999999999999972
Q 000607 558 SSSVSLIYFYCSRLPSDGYFKPTPKFHI--N----KEMGICTLYLPNNCPIQTV--IAQGNIKTLKQAACLEACKKLHQI 629 (1396)
Q Consensus 558 ~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~----~~~~~~~v~LP~~~p~~~~--~~~~~~~~Ak~~aa~~a~~~L~~~ 629 (1396)
.+-.+.|+.||++= ...|.|.+ . ...|.|+|.+... .-+ -..+|||.|++.||-.|+..|.+.
T Consensus 6 ~~~Ks~LqE~~qk~------k~~P~Y~~~~~G~~h~~~F~~~v~v~g~---~~~~~g~g~sKK~AEq~AA~~al~~L~~~ 76 (99)
T d1whqa_ 6 SGIKNFLYAWCGKR------KMTPAYEIRAVGNKNRQKFMCEVRVEGF---NYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CSSHHHHHHHHHHT------TCCCEEEEEEEECSSSEEEEEEEECTTC---SCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC------CCCCEEEEECCCCCCCCEEEEEEEECCC---CCEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 66889999999868------9998699840247888608999985165---43100577528899999999999999985
Q ss_pred CCCCCCCCCCC
Q ss_conf 98998877620
Q 000607 630 GALTDNLLPDI 640 (1396)
Q Consensus 630 g~ldd~L~P~~ 640 (1396)
|++...-+|..
T Consensus 77 ~~~~~~~~P~~ 87 (99)
T d1whqa_ 77 NEVKSEEVPAV 87 (99)
T ss_dssp TSSCTTTSCCC
T ss_pred CCCCHHHCCCC
T ss_conf 99985448887
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.033 Score=27.67 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 28999999999530289990399996307889999999973358789961358815899767789889999999983598
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~K~~~L~~~L~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~~~~m~~~~r~~~l~~Fr~g~ 448 (1396)
|.|-...+..+.... ..+.++++.+.+..-+...+..+++..+. -+.++..++|.. +.+++.++.++..+|+
T Consensus 87 sGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~-~~~~v~~l~~~~------~~~~~~~~~~~~~~g~ 158 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMISRFR------SAKEQTQILAEVAEGK 158 (233)
T ss_dssp TTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTT-TTCCEEEESTTS------CHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHHHHH-CCCEEEECCCCC------CCHHHHHHHHHHHCCC
T ss_conf 772899999999999-76895699746887679999999998724-797797635765------3126999999996799
Q ss_pred EEEEEEEC-CCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 12999803-4545557875358999379985778998640
Q 000607 449 VNVIVATS-ILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487 (1396)
Q Consensus 449 ~niLVaT~-v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~G 487 (1396)
.+++|.|. .+...+.+++..+||.=+-... +|-|+.+
T Consensus 159 ~~iviGths~l~~~~~f~~LgLiIiDEeH~f--g~kQ~~~ 196 (233)
T d2eyqa3 159 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRF--GVRHKER 196 (233)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEEESGGGS--CHHHHHH
T ss_pred CCEEEEEHHHHCCCCCCCCCCCEEEECHHHH--HHHHHHH
T ss_conf 7889742023306776555463022231233--2578999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.04 Score=27.11 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=65.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 8999479812899999999999999469999489999288-531899999998716970889958988656780105874
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt-~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
++++.|||+|||.+.+-+..++ ...+.+..++-+.| +.=+..|-+.+.+..++.+...... .+ +
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~----~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~--~d------~--- 76 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQF----EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--AD------S--- 76 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----HTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTT--CC------H---
T ss_pred EEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CC------H---
T ss_conf 9998999999899999999999----9779947998232136661204555434338862113568--77------9---
Q ss_pred HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC--CCCEEEEEECCCCC
Q ss_conf 01591999569999995730175436535999934310137880999999999732038999--99919998134777
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS--NLPRIFGMTASPIK 192 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~~~~--~~p~ilgLTATp~~ 192 (1396)
..++.+... .......+++++|=+=+...+.....-++.+.... +.... +.-.+|.|+|+-..
T Consensus 77 ----------~~~l~~~~~--~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~-~~~~~~~p~~~~LVl~a~~~~ 141 (211)
T d2qy9a2 77 ----------ASVIFDAIQ--AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVM-KKLDVEAPHEVMLTIDASTGQ 141 (211)
T ss_dssp ----------HHHHHHHHH--HHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHH-TTTCTTCCSEEEEEEEGGGTH
T ss_pred ----------HHHHHHHHH--HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCEEEEEHHCCCCC
T ss_conf ----------999999999--99876998899656887632077899999999998-530466860012200123576
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.012 Score=30.48 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCEEEE-EC----CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2359999996425999999998538999-19----829999992899998655656899999999999999999
Q 000607 558 SSSVSLIYFYCSRLPSDGYFKPTPKFHI-NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 558 ~~ai~ll~~yC~~Lp~d~~~~~~P~~~~-~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
-+.+++|+.||++.. ...|.|.+ .. ..|.|+|.+... .+ ..-..+|||.|++.||-.|...|
T Consensus 9 K~p~s~LqE~~Qk~~-----~~~p~Y~~~~~~g~~~~F~~~v~i~g~-~~-~~g~G~sKK~Aeq~AA~~AL~~L 75 (85)
T d1x47a1 9 KSEVCILHEYMQRVL-----KVRPVYNFFECENPSEPFGASVTIDGV-TY-GSGTASSKKLAKNKAARATLEIL 75 (85)
T ss_dssp CCHHHHHHHHHHHHT-----CSCCEEEEEECSSSSCCEEEEEEETTE-EE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCCEEEEEEECCE-EE-ECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 598899999999829-----999973787547898888999999999-97-44784129999999999999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.045 Score=26.71 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99999998608----98999479812899999999999999469999489999288
Q 000607 26 QLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 26 Q~e~~e~al~~----n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt 77 (1396)
|.+.++.+++. +.|++.+.|+|||.+|..+...+.. ....+.-++++.|.
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~--~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCCCTTTEEEECCS
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCEEEEECC
T ss_conf 7899999996699855998898998889999999999843--45679988998077
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.028 Score=28.13 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=50.2
Q ss_pred CEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEE------ECCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 078122359999996425999999998538999------19829999992899998655656899999999999999999
Q 000607 553 TIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHI------NKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 553 A~l~~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~------~~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
--++..+-++.|+.||++- ...|.|.+ ....|.|+|.+.... + ..-.-+|||.||+.||-+|..+|
T Consensus 9 ~~~~~~n~~s~L~E~~Qk~------~~~~~y~~~~~g~~h~~~F~~~v~i~g~~-~-~~g~G~sKK~Akq~AA~~Al~~L 80 (89)
T d1qu6a2 9 EGLSMGNYIGLINRIAQKK------RLTVNYEQCASGVHGPEGFHYKCKMGQKE-Y-SIGTGSTKQEAKQLAAKLAYLQI 80 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHS------CCEEEEEEEEECSSSSSEEEEEEEEETTB-C-CEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHC------CCCCCEEEECCCCCCCCCEEEEEEECCCC-C-CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6765328999999999962------88764266315787887569999989703-6-66565269999999999999999
Q ss_pred HHCC
Q ss_conf 9729
Q 000607 627 HQIG 630 (1396)
Q Consensus 627 ~~~g 630 (1396)
....
T Consensus 81 ~~~~ 84 (89)
T d1qu6a2 81 LSEE 84 (89)
T ss_dssp HHCC
T ss_pred HCCC
T ss_conf 7037
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.016 Score=29.67 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCEEEE----ECCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 122359999996425999999998538999----1982999999289999865565689999999999999999997298
Q 000607 556 TLSSSVSLIYFYCSRLPSDGYFKPTPKFHI----NKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGA 631 (1396)
Q Consensus 556 ~~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~----~~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~~g~ 631 (1396)
..-+-.+.|+.||++-- ...|.|.+ ....|.|+|.+... .+..-...+|||.|+++||..|+++| |.
T Consensus 24 ~~~~pKs~LqE~~Qk~~-----~~~P~Y~~~~~~~~~~F~~~V~v~g~-~~~s~~g~~SKK~AEq~AA~~AL~~L---g~ 94 (128)
T d1whna_ 24 PQITPKMCLLEWCRREK-----LPQPVYETVQRTIDRMFCSVVTVAEQ-KYQSTLWDKSKKLAEQTAAIVCLRSQ---GL 94 (128)
T ss_dssp TTCCHHHHHHHHHHHTT-----CCCCCCCEEECSSSCCEEEEEEETTE-EEEESSCBSSHHHHHHHHHHHHHHHH---TC
T ss_pred CCCCHHHHHHHHHHHCC-----CCCCEEEEEECCCCCCCEEEEEECCE-EEECCCCCCCHHHHHHHHHHHHHHHH---CC
T ss_conf 89987899999998639-----99976887622557777799998884-76516774538999999999999983---89
Q ss_pred CCCC
Q ss_conf 9988
Q 000607 632 LTDN 635 (1396)
Q Consensus 632 ldd~ 635 (1396)
.+.+
T Consensus 95 ~~~~ 98 (128)
T d1whna_ 95 PEGR 98 (128)
T ss_dssp SSST
T ss_pred CCCC
T ss_conf 8887
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.015 Score=29.96 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHC-C----CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 1999999999860-8----98999479812899999999999
Q 000607 23 RNYQLEALENALK-Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 R~yQ~e~~e~al~-~----n~Ii~~~TGsGKT~iailli~~l 59 (1396)
++...+.+..+.. + +++++.|.|+|||.++-.+++++
T Consensus 16 ~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 16 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 399999999999769987859988999998899999999762
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.039 Score=27.16 Aligned_cols=73 Identities=8% Similarity=-0.036 Sum_probs=53.8
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCEEEE--E-----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8122359999996425999999998538999--1-----98299999928999986556568999999999999999999
Q 000607 555 ATLSSSVSLIYFYCSRLPSDGYFKPTPKFHI--N-----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLH 627 (1396)
Q Consensus 555 l~~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~-----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~ 627 (1396)
-|..+-++.|+.||++- ...|.|.. . ...|.|+|.+.... + ..-.-.|||.|++.||-.|...|-
T Consensus 4 ~~~~~yk~~L~E~~Qk~------~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~~-~-~~g~g~sKK~Aeq~AA~~aL~~L~ 75 (85)
T d1x49a1 4 DTPGFYMDKLNKYRQMH------GVAITYKELSTSGPPHDRRFTFQVLIDEKE-F-PEAKGRSKQEARNAAAKLAVDILD 75 (85)
T ss_dssp CCTTHHHHHHHHHHHHH------TCCEEEEEEEEESCSSSCEEEEEEEESSCC-C-CCEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC------CCCCEEEEEEECCCCCCCEEEEEEECCCEE-E-ECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98133999999999866------999758998721898874589988418467-5-055665599999999999999998
Q ss_pred HCCCCCCC
Q ss_conf 72989988
Q 000607 628 QIGALTDN 635 (1396)
Q Consensus 628 ~~g~ldd~ 635 (1396)
+.+..|.+
T Consensus 76 ~~~~~~s~ 83 (85)
T d1x49a1 76 NENKVDCH 83 (85)
T ss_dssp TTCCCCSS
T ss_pred HCCCCCCC
T ss_conf 71765655
|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute 2 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.97 E-value=0.022 Score=28.82 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=45.7
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEC
Q ss_conf 90499984328999899676688874519989998838431359974275202553333311121102689975205506
Q 000607 845 GQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKISFELP 924 (1396)
Q Consensus 845 ~~~Y~v~~v~~dl~p~S~~~~~~~~~~ty~~y~~~k~~~~i~~~~qPll~~~~~~~~~n~l~~~~~~~~~~~~~~~~~L~ 924 (1396)
+|.|.|.++...-+-...|+ .+++..|-.+||++ |++.+.+++-|.|.+..-. + -.++|
T Consensus 54 ~R~~~I~glt~~~a~~~~F~-~dg~~itV~~YF~~-~~~~Lk~p~lPcl~vG~~~------------------k-~~ylP 112 (123)
T d1t2sa_ 54 PRVYRVNGLSRAPASSETFE-HDGKKVTIASYFHS-RNYPLKFPQLHCLNVGSSI------------------K-SILLP 112 (123)
T ss_dssp CEEEEECEEEEEETTTCEEE-ETTEEEEHHHHHHH-TTCCCSCTTSEEEEEECSS------------------S-EEEEC
T ss_pred CCEEEECCCCCCCHHCCEEC-CCCEEEEHHHHHHH-HCCCCCCCCCCEEEECCCC------------------C-CCEEC
T ss_conf 73699813788863225553-79918889999998-5954348997679967888------------------8-72855
Q ss_pred CCCCCC
Q ss_conf 332210
Q 000607 925 PELCRI 930 (1396)
Q Consensus 925 pelC~~ 930 (1396)
.|+|.+
T Consensus 113 mElc~I 118 (123)
T d1t2sa_ 113 IELCSI 118 (123)
T ss_dssp GGGEEE
T ss_pred HHHEEE
T ss_conf 502786
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.94 E-value=0.068 Score=25.56 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=65.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 8999479812899999999999999469999489999288-531899999998716970889958988656780105874
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt-~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
++++.|||+|||.+.+.+..++.. .+.+..++-+.| |.=+..|-+.+.+..++.+..... +.+. .
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~----~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~--~~d~------~-- 79 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVD----EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE--GADP------A-- 79 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST--TCCH------H--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCH------H--
T ss_conf 999899999889999999999997----7990699960133420467888776432764103677--7768------9--
Q ss_pred HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC--EEEEEECCCC
Q ss_conf 01591999569999995730175436535999934310137880999999999732038999999--1999813477
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLP--RIFGMTASPI 191 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~~~~~~p--~ilgLTATp~ 191 (1396)
.++..... .....+.++|++|=+=+...+.....-+..+.... .......| .+|.|+|+-.
T Consensus 80 -----------~~~~~~~~--~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~-~~~~~~~p~~~~LVl~a~~~ 142 (213)
T d1vmaa2 80 -----------AVAFDAVA--HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVV-KKKIPDAPHETLLVIDATTG 142 (213)
T ss_dssp -----------HHHHHHHH--HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHG-GGTCTTCCSEEEEEEEGGGH
T ss_pred -----------HHHHHHHH--HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCEEEEEECCCCC
T ss_conf -----------98788789--99876999899824553301688889988887664-20256665025786212348
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=94.90 E-value=0.07 Score=25.49 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHC----C-C-EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 121999999999860----8-9-899947981289999999999999946999948999928853189999999871697
Q 000607 21 FARNYQLEALENALK----Q-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 21 ~~R~yQ~e~~e~al~----~-n-~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l 94 (1396)
.|+.=|-++++.+.+ + + ..+..-+||||+++...++... ++.++||+|+...+.|+++.++.+.+-
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~--------~rp~LvVt~~~~~A~~l~~dL~~~l~~ 79 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL--------GRPALVLAPNKILAAQLAAEFRELFPE 79 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 999877999999999986699737985688878999999999985--------999999918999999999999986476
Q ss_pred EEEEE
Q ss_conf 08899
Q 000607 95 KVGKY 99 (1396)
Q Consensus 95 ~v~~~ 99 (1396)
....+
T Consensus 80 ~~v~~ 84 (408)
T d1c4oa1 80 NAVEY 84 (408)
T ss_dssp SEEEE
T ss_pred CCEEE
T ss_conf 64556
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.04 Score=27.10 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=46.8
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCEEEE---E----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 359999996425999999998538999---1----9829999992899998655656899999999999999999972
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHI---N----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQI 629 (1396)
Q Consensus 559 ~ai~ll~~yC~~Lp~d~~~~~~P~~~~---~----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~~ 629 (1396)
+.++.|+.||++- ...|.|.+ . ...|.|+|.+.. +...-.-+|||.|++.||-.|...|...
T Consensus 3 ~Pis~L~E~~qk~------~~~p~y~~~~~~Gp~h~~~F~~~v~v~~---~~~~g~g~sKK~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 3 TPIQVLHEYGMKT------KNIPVYECERSDVQIHVPTFTFRVTVGD---ITCTGEGTSKKLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CHHHHHHHHHHHT------TCCCEEEEEEEECSSSSCEEEEEEEETT---EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC------CCCCEEEEEEEECCCCCCEEEEEEEEEE---EEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8779999999967------9898899865358988717999999988---9988614659999999999999998742
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.072 Score=25.40 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=26.6
Q ss_pred HHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998608----9899947981289999999999999
Q 000607 26 QLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 26 Q~e~~e~al~~----n~Ii~~~TGsGKT~iailli~~l~~ 61 (1396)
..+.+..+++. +.++..|+|+|||.++-.+++++..
T Consensus 20 ~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 20 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999999998699885999899999849999999999709
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.70 E-value=0.078 Score=25.17 Aligned_cols=128 Identities=16% Similarity=0.072 Sum_probs=67.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 8999479812899999999999999469999489999288-531899999998716970889958988656780105874
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt-~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
++++.|||+|||.+.+-+..++. ..+.+..++-+.| |.=+.+|-+.+.+..++.+..... ..+.
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~----~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~--~~d~--------- 73 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQ----NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDP--------- 73 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH----TTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCT--TCCH---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHH----HCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCC--CCCH---------
T ss_conf 99989999988999999999999----77990799981366654026676405456823896167--7427---------
Q ss_pred HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEEECCCCC
Q ss_conf 0159199956999999573017543653599993431013788099999999973203-899999919998134777
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE-TGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~-~~~~~~p~ilgLTATp~~ 192 (1396)
...+.+... .......++|++|=+=+...+.....-+..+...... ....+...+|-|+|+-..
T Consensus 74 ----------~~~~~~~~~--~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~ 138 (207)
T d1okkd2 74 ----------AALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 138 (207)
T ss_dssp ----------HHHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT
T ss_pred ----------HHHHHHHHH--HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
T ss_conf ----------889999899--99987999997175222311277888877777776532567873599996200471
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.47 E-value=0.025 Score=28.43 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=5.8
Q ss_pred CEEEEEEECCCCC
Q ss_conf 8299999928999
Q 000607 588 EMGICTLYLPNNC 600 (1396)
Q Consensus 588 ~~~~~~v~LP~~~ 600 (1396)
++.++.+.+|+.+
T Consensus 105 ~G~Rv~~v~~p~s 117 (323)
T d1g6oa_ 105 NGERVQIVLSPVT 117 (323)
T ss_dssp TSCEEEEECTTTS
T ss_pred CCEEEEEECCCCC
T ss_conf 8538998246765
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.082 Score=25.04 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCEEEE---E----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2359999996425999999998538999---1----9829999992899998655656899999999999999999
Q 000607 558 SSSVSLIYFYCSRLPSDGYFKPTPKFHI---N----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 558 ~~ai~ll~~yC~~Lp~d~~~~~~P~~~~---~----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
.+-++.|+.||++--. ..|.|.+ . ...|.|+|.+.. ....-..+|||.|++.||-+|...|
T Consensus 6 ~~P~s~LqE~~Q~~~~-----~~P~Y~~~~~~g~~h~~~F~~~v~v~~---~~~~g~g~SKK~Ae~~AA~~aL~~l 73 (89)
T d1uhza_ 6 SGPISRLAQIQQARKE-----KEPDYILLSERGMPRRREFVMQVKVGN---EVATGTGPNKKIAKKNAAEAMLLQL 73 (89)
T ss_dssp SCHHHHHHHHHHHTTS-----CCCEEEEEEEESCSTTCEEEEEEEETT---EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCC-----CCCEEEECCCCCCCCCEEEEEEEEEEE---EECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8819999999996499-----999798502445677506999999965---6402320378999999999999996
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.15 E-value=0.099 Score=24.50 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHH-----CC----C----EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 2199999999986-----08----9----8999479812899999999999999
Q 000607 22 ARNYQLEALENAL-----KQ----N----TIVFLETGSGKTLIAIMLLRSYAYL 62 (1396)
Q Consensus 22 ~R~yQ~e~~e~al-----~~----n----~Ii~~~TGsGKT~iailli~~l~~~ 62 (1396)
=|+-|.+.+..++ ++ | .+++.|+|+|||.++-.++..+...
T Consensus 20 ~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~ 73 (287)
T d1w5sa2 20 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA 73 (287)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 789999999999999997499888853489967899989999999999998754
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.074 Score=25.30 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCEEEE---EC----CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22359999996425999999998538999---19----829999992899998655656899999999999999999
Q 000607 557 LSSSVSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 557 ~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
-.+.++.|+.||++-- ...|.|.+ .+ ..|.|.|.+- .+...-.-.|||.|++.||-.|..+|
T Consensus 8 ~~npks~LqE~~q~~~-----~~~P~Y~~~~~~g~~h~~~F~~~v~v~---~~~~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 8 ECNPVGALQELVVQKG-----WRLPEYTVTQESGPAHRKEFTMTCRVE---RFIEIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCHHHHHHHHHHHHT-----CCCCEEEEEEEECCSSSCEEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCC-----CCCCEEEEEEEECCCCCCCEEEEEEEC---CEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8897899999999749-----999979986643267775279999954---22411364529999999999999869
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.72 E-value=0.12 Score=23.86 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=50.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 89994798128999999999999994699994899992885318999999987169708899589886567801058740
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
++++.++|+|||+.+..+..++.. .+..++++ +...+..+....+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------- 86 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK-----RGYRVIYS-SADDFAQAMVEHLKKG-------------------------- 86 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH-----TTCCEEEE-EHHHHHHHHHHHHHHT--------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CCCCEEEE-CHHHHHHHHHHHHHCC--------------------------
T ss_conf 799888998399999999987446-----76504884-4378799999998716--------------------------
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 159199956999999573017543653599993431013788099999999973
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~ 171 (1396)
..+.+.+. +...+++++|+.|.+.++......+-..+..
T Consensus 87 --------~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~ 125 (213)
T d1l8qa2 87 --------TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNT 125 (213)
T ss_dssp --------CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred --------CHHHHHHH-------HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf --------62667898-------7621301011265505865778899999998
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.11 Score=24.08 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCEEEE--E-----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 122359999996425999999998538999--1-----982999999289999865565689999999999999999997
Q 000607 556 TLSSSVSLIYFYCSRLPSDGYFKPTPKFHI--N-----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQ 628 (1396)
Q Consensus 556 ~~~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~-----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~ 628 (1396)
+..+-++.|+.||++- ...|.|.+ . ...|.|+|.+... .+ ..-.-+|||.|++.||-.|+..|.+
T Consensus 11 ~~~~y~s~LqE~~Qk~------~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~-~~-~~g~G~sKK~Aeq~AA~~aL~~L~~ 82 (90)
T d1qu6a1 11 SAGFFMEELNTYRQKQ------GVVLKYQELPNSGPPHDRRFTFQVIIDGR-EF-PEGEGRSKKEAKNAAAKLAVEILNK 82 (90)
T ss_dssp SSCSHHHHHHHHHHHH------TCCCEEEEEESCBTTTBCCEEEEEESSSS-CC-CEEECCSSHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHH------CCCCCEEEEEEECCCCCCEEEEEEEECCE-EE-ECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9778999999999982------99985799871079887447999997756-64-0567876999999999999999983
Q ss_pred C
Q ss_conf 2
Q 000607 629 I 629 (1396)
Q Consensus 629 ~ 629 (1396)
-
T Consensus 83 ~ 83 (90)
T d1qu6a1 83 E 83 (90)
T ss_dssp C
T ss_pred H
T ss_conf 0
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.61 E-value=0.13 Score=23.75 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCE-EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf 898-9994798128999999999999994699994899992--8853189999999871697088995898865678010
Q 000607 36 QNT-IVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV--PKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGAT 112 (1396)
Q Consensus 36 ~n~-Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLv--Pt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~ 112 (1396)
.++ +++.|||+|||.+...+..++.. .++++.+++ ..+.-+.+|-+.+.+..++.+..........
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-----~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~------ 78 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-----KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE------ 78 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-----TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH------
T ss_conf 868999899999889999999999997-----799279995443464088889999986288631112442036------
Q ss_pred HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 5874015919995699999957301754365359999343101378809999999997320389999991999813477
Q 000607 113 WKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 113 ~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
........ .......+++++|=+-+...+.....-+..+.... .....++.+.|+-.
T Consensus 79 ---------------~~~~~~~~--~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~-----~~~~~llv~~a~~~ 135 (207)
T d1ls1a2 79 ---------------SIRRRVEE--KARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-----GPDEVLLVLDAMTG 135 (207)
T ss_dssp ---------------HHHHHHHH--HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-----CCSEEEEEEEGGGT
T ss_pred ---------------HHHHHHHH--HHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHC-----CCCEEEEEECCCCC
T ss_conf ---------------78888988--87633676403345442000036688999998631-----87369998434556
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.53 E-value=0.13 Score=23.66 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCEEEE--E-----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2359999996425999999998538999--1-----98299999928999986556568999999999999999999729
Q 000607 558 SSSVSLIYFYCSRLPSDGYFKPTPKFHI--N-----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIG 630 (1396)
Q Consensus 558 ~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~-----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~~g 630 (1396)
-+.+++|+.||.. +.|.+ . ...|.|++.+=.. .-.-.-+|||.||+.||-.|+..|.+..
T Consensus 4 Knpv~~L~E~~~~----------~~y~~~~~~G~~h~~~F~~~v~v~~~---~~~g~G~SKK~Ak~~AA~~aL~~L~~~~ 70 (71)
T d2b7va1 4 KNPVMILNELRPG----------LKYDFLSESGESHAKSFVMSVVVDGQ---FFEGSGRNKKLAKARAAQSALATVFNLH 70 (71)
T ss_dssp SCHHHHHHHHCCS----------CEEEEEECCCCTTTCCEEEEEECSSC---EEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCC----------CEEEEEEEECCCCCCEEEEEEEECCE---EEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 7989999997659----------86899251689989739999999999---9981689889999999999999987468
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=93.36 E-value=0.092 Score=24.69 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEE---EC----CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999996425999999998538999---19----8299999928999986556568999999999999999999
Q 000607 561 VSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLH 627 (1396)
Q Consensus 561 i~ll~~yC~~Lp~d~~~~~~P~~~~---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~ 627 (1396)
++.|+.||++..- ..|.|.+ .+ ..|.|+|.+.. ....-..+|||.|++.||-.|...|.
T Consensus 3 v~~LqE~~q~~~~-----~~P~Y~~~~~~G~~h~~~F~~~v~v~~---~~~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 3 VGSLQELAVQKGW-----RLPEYTVAQESGPPHKREFTITCRVET---FVETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHTC-----CCCEEEEEEEESCGGGCEEEEEEEETT---EEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-----CCCEEEEEEEECCCCCCCEEEEEEEEE---EEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 3899999997599-----998389998437877741689999866---78763767299999999999999845
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.20 E-value=0.03 Score=27.89 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 08989994798128999999999
Q 000607 35 KQNTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 35 ~~n~Ii~~~TGsGKT~iailli~ 57 (1396)
+.|+++..|||+|||++|--+.+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 56479989999889999999998
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.16 Score=23.17 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEE-E-----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996425999999998538999-1-----982999999289999865565689999999999999999997298
Q 000607 561 VSLIYFYCSRLPSDGYFKPTPKFHI-N-----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGA 631 (1396)
Q Consensus 561 i~ll~~yC~~Lp~d~~~~~~P~~~~-~-----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~~g~ 631 (1396)
+++|+.||++-- ..+.|.. . ...|.|+|.+-... + ..-.-.|||.|++.||-.|+.+|.+...
T Consensus 2 ~s~L~E~~Qk~~------~~~~~~~~~~G~~h~~~F~~~v~v~~~~-~-~~g~G~sKK~Aeq~AA~~Al~~L~~~~~ 70 (76)
T d1x48a1 2 IGLVNSFAQKKK------LSVNYEQCEPNSELPQRFICKCKIGQTM-Y-GTGSGVTKQEAKQLAAKEAYQKLLKSPP 70 (76)
T ss_dssp HHHHHHHHHHTT------CCEEEEECCCSSSSSCCEEEEEEESSCE-E-EEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHC------CCCCCCCCCCCCCCCCCEEEEEEECCEE-E-CCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 489999999868------9976444776989997589999999999-5-7857627999999999999999970488
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.16 Score=23.12 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9899947981289999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~ 58 (1396)
+++++.|.|+|||+.|-.+..+
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4887668988835999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.14 E-value=0.076 Score=25.24 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=19.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 898999479812899999999999
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~~l 59 (1396)
++++++.|||+|||++|-.+...+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 669998999988889999986213
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.81 E-value=0.14 Score=23.52 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=44.0
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCEEEE---E----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 359999996425999999998538999---1----9829999992899998655656899999999999999999
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHI---N----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 559 ~ai~ll~~yC~~Lp~d~~~~~~P~~~~---~----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
+..+.|+.||++-. ...|.|.+ . ...|.|+|.+.. ....-.-+|||.|++.||-.|...|
T Consensus 1 d~Ks~LqE~~q~~~-----~~~P~Y~~~~~~g~~h~~~F~~~v~v~~---~~~~g~g~sKK~Aeq~AA~~aL~~L 67 (68)
T d2nuga2 1 DYKTILQEITQKRW-----KERPEYRLISVEGPHHKKKFIVEAKIKE---YRTLGEGKSKKEAEQRAAEELIKLL 67 (68)
T ss_dssp CHHHHHHHHHHHHH-----SCCCEEEEEEEESCGGGCEEEEEEEETT---EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC-----CCCCEEEEEEEECCCCCCEEEEEEEECC---EEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 90789999999759-----9999899998418887847999999887---7999950999999999999999973
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.64 E-value=0.23 Score=22.05 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHC----------CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCHHHHHHHHHH
Q ss_conf 21999999999860----------89899947981289999999999999946999948-99992885318999999987
Q 000607 22 ARNYQLEALENALK----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFV-AVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~R~yQ~e~~e~al~----------~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~-~liLvPt~~Lv~Q~~~~i~~ 90 (1396)
=|+.|.+.+..++. +++++..|+|+|||.++-.+... +.....-+ +.+-+.......+....+..
T Consensus 20 ~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (276)
T d1fnna2 20 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL----YKDKTTARFVYINGFIYRNFTAIIGEIAR 95 (276)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH----HTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH----HHCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 77999999999999998578988881688898999899999999999----75446885787323001124666545677
Q ss_pred HCCCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 16970889958988656780105874015919995699999957301754365359999343101378
Q 000607 91 HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 91 ~~~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~ 158 (1396)
..+.... ..| . +...+...+............+++||.++....
T Consensus 96 ~~~~~~~-~~~---------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 139 (276)
T d1fnna2 96 SLNIPFP-RRG---------L--------------SRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD 139 (276)
T ss_dssp HTTCCCC-SSC---------C--------------CHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHH
T ss_pred HHHHHHH-HHC---------C--------------CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 6433455-532---------5--------------435789999998752065433203688875354
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.00 E-value=0.27 Score=21.64 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=60.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 8999479812899999999999999469999489999288-531899999998716970889958988656780105874
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt-~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
++++.|||+|||.+.+-+..++.. .+.+..++-+.+ +.=+..|-+.+.+..++.+...... .+ ..
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~----~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~--~~------~~-- 80 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKK----KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE--KD------VV-- 80 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHH----TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTC--CC------HH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCC--HH------HH--
T ss_conf 999899999989999999999997----79936999720235515678987401468422302441--02------44--
Q ss_pred HCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH--HHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 0159199956999999573017543653599993431013788099--999999973203899999919998134777
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA--CIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~--~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..+.+.+. .......++|++|=+=+...+.... .-|..+.... .....++-|+|+-..
T Consensus 81 -----------~~~~~a~~--~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~-----~~~~~~LVl~a~~~~ 140 (211)
T d1j8yf2 81 -----------GIAKRGVE--KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI-----KPDEVTLVIDASIGQ 140 (211)
T ss_dssp -----------HHHHHHHH--HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH-----CCSEEEEEEEGGGGG
T ss_pred -----------HHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEEECCCCC
T ss_conf -----------78999998--7402677369985377676313667899999998625-----976689998435684
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.77 E-value=0.28 Score=21.50 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=45.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 89994798128999999999999994699994899992885318999999987169708899589886567801058740
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.+++.|.|+|||..|.+++..+...... . ..|. ..+ ..+..+.......+..+.+....
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~-~------~~~~-~~~-~~~~~i~~~~~~~~~~~~~~~~~------------ 95 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLNCETGI-T------ATPC-GVC-DNCREIEQGRFVDLIEIDAASRT------------ 95 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHCTTCS-C------SSCC-SCS-HHHHHHHHTCCTTEEEEETTCSS------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC-C------CCCC-CCC-HHHHHHHCCCCCEEEEECCHHCC------------
T ss_conf 9888899875899999999984685566-6------6755-542-47999974798707996112007------------
Q ss_pred CCCCEEEECHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCC
Q ss_conf 1591999569999995730175--4365359999343101378
Q 000607 118 SKHEVLVMTPQILLDGLRLSYF--KLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~--~~~~i~liI~DEaH~~~~~ 158 (1396)
..+.+.+.+..... ......++|+||+|.+..+
T Consensus 96 --------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~ 130 (239)
T d1njfa_ 96 --------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 130 (239)
T ss_dssp --------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH
T ss_pred --------CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
T ss_conf --------89999999999974652599879999781108999
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.62 E-value=0.057 Score=26.08 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCEEEE--E-C----CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2359999996425999999998538999--1-9----829999992899998655656899999999999999999972
Q 000607 558 SSSVSLIYFYCSRLPSDGYFKPTPKFHI--N-K----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQI 629 (1396)
Q Consensus 558 ~~ai~ll~~yC~~Lp~d~~~~~~P~~~~--~-~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L~~~ 629 (1396)
.+.++.|+.||++-. ..|.|.+ . + ..|.|+|.+.. ....-.-+|||.|++.||-.|+..|.++
T Consensus 7 k~Pvs~L~E~~q~~~------~~~~y~~~~~~G~~h~~~F~~~v~v~~---~~~~g~G~SKK~Aeq~AA~~al~~L~~l 76 (76)
T d1ekza_ 7 KSPISQVHEIGIKRN------MTVHFKVLREEGPAHMKNFITACIVGS---IVTEGEGNGKKVSKKRAAEKMLVELQKL 76 (76)
T ss_dssp SCHHHHHHHHHHHTT------CCCEEEESSSCCSSSCSCSSEEEEETT---EEEEECCCSTTSSSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHCC------CCCEEEEEEEECCCCCEEEEEEEEEEE---EEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 898999999999679------897089997137988708999999821---4766056769999999999999998709
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=90.23 E-value=0.31 Score=21.20 Aligned_cols=93 Identities=8% Similarity=0.022 Sum_probs=63.9
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHH
Q ss_conf 99999999469999489999288531899999998716970889958988656780105874015919995699999957
Q 000607 55 LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGL 134 (1396)
Q Consensus 55 li~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l 134 (1396)
++.++.+... .+.++++.|+++.-+...++.++.+ ++++..++|++.........-+-.-...+|+|+|- .+
T Consensus 20 ll~~i~~~~~--~g~r~lvfc~t~~~~~~l~~~L~~~-Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~ 91 (174)
T d1c4oa2 20 LMEGIRERAA--RGERTLVTVLTVRMAEELTSFLVEH-GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL 91 (174)
T ss_dssp HHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC
T ss_pred HHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE-----EE
T ss_conf 9999999986--5983899982303799999999865-97258986155418899999999779869999635-----64
Q ss_pred HHCCCCCCCEEEEEEECCCCCC
Q ss_conf 3017543653599993431013
Q 000607 135 RLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 135 ~~~~~~~~~i~liI~DEaH~~~ 156 (1396)
...++..+++++|+=.++...
T Consensus 92 -~~GiDip~V~~Vi~~~~~~~~ 112 (174)
T d1c4oa2 92 -REGLDIPEVSLVAILDADKEG 112 (174)
T ss_dssp -CTTCCCTTEEEEEETTTTSCS
T ss_pred -EEECCCCCCCEEEEECCCCCC
T ss_conf -211367777389980365445
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.32 E-value=0.37 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+++++.|.|+|||++|-.+..++
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHC
T ss_conf 67866899888228999999982
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.28 E-value=0.37 Score=20.73 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEE---E----CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 59999996425999999998538999---1----9829999992899998655656899999999999999999
Q 000607 560 SVSLIYFYCSRLPSDGYFKPTPKFHI---N----KEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 560 ai~ll~~yC~~Lp~d~~~~~~P~~~~---~----~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aa~~a~~~L 626 (1396)
-.+.|+.||++-- ...|.|.+ . ...|.|.|.+-... + ..-..+|||.|++.||-.|+..|
T Consensus 2 ~Ks~LqE~~Qk~~-----~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~-~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 2 YKTALQEIVQSEH-----KVPPEYILVRTEKNDGDRIFVVEVRVNGKT-I-ATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp HHHHHHHHHHHHH-----SSCCEEEEEEEECCTTSCEEEEEEEETTEE-E-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----CCCCEEEEEEEECCCCCCEEEEEEEECCEE-E-EEEEECCHHHHHHHHHHHHHHHH
T ss_conf 1789999999749-----999979999966888884299999989999-9-99872899999999999999986
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.20 E-value=0.38 Score=20.69 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHHHHHC-C----C--EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 9999860-8----9--89994798128999999999999994699994899992885318999999
Q 000607 29 ALENALK-Q----N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEA 87 (1396)
Q Consensus 29 ~~e~al~-~----n--~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~ 87 (1396)
.++.++. | + +.++.+.|+|||.+++.++..... .+..++|+----.+-..+++.
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk-----~g~~v~yiDtE~~~~~~~a~~ 104 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-----AGGTCAFIDAEHALDPVYARA 104 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSCCCCHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-----CCCEEEEEECCCCCCHHHHHH
T ss_conf 9999756798667547898058765227999999999970-----799899998876589999998
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=0.46 Score=20.11 Aligned_cols=127 Identities=21% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 2121999999999860----8989994798128999999999999994699---99489999288531899999998716
Q 000607 20 PFARNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKP---SPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 20 ~~~R~yQ~e~~e~al~----~n~Ii~~~TGsGKT~iailli~~l~~~~~~~---~~k~~liLvPt~~Lv~Q~~~~i~~~~ 92 (1396)
..-|+=..+-+..++. .|.+++.+.|.|||-++--+.+.+... +.+ .+++++.+-+. .|
T Consensus 20 ~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~-~vp~~l~~~~i~~l~~~-~l------------ 85 (268)
T d1r6bx2 20 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG-DVPEVMADCTIYSLDIG-SL------------ 85 (268)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHT-CSCGGGTTCEEEECCCC---------------
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCEEEEEEEC-HH------------
T ss_conf 63809999999999954766896798889886779999999999817-84500035412786405-67------------
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC---CCHHHHHHHHH
Q ss_conf 970889958988656780105874015919995699999957301754365359999343101378---80999999999
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQYACIMTEFY 169 (1396)
Q Consensus 93 ~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~---~~y~~im~~f~ 169 (1396)
+.|.... ..|...+ ...+.. +.-..=.++++||.|.+.+. .....-+..+.
T Consensus 86 ------iag~~~~-----g~~e~r~-------------~~i~~~--~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~L 139 (268)
T d1r6bx2 86 ------LAGTKYR-----GDFEKRF-------------KALLKQ--LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI 139 (268)
T ss_dssp -------CCCCCS-----SCHHHHH-------------HHHHHH--HSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH
T ss_pred ------HCCCCCC-----HHHHHHH-------------HHHHHH--HHCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHH
T ss_conf ------5067630-----0589999-------------999998--6126784688433698862777788641179876
Q ss_pred HHHCCCCCCCCCEEEEEECCC
Q ss_conf 732038999999199981347
Q 000607 170 HRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp 190 (1396)
.+. .....-+++| +.||
T Consensus 140 kp~---L~rg~i~vIg-atT~ 156 (268)
T d1r6bx2 140 KPL---LSSGKIRVIG-STTY 156 (268)
T ss_dssp SSC---SSSCCCEEEE-EECH
T ss_pred HHH---HHCCCCEEEE-ECCH
T ss_conf 488---7479875999-5799
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.83 E-value=0.46 Score=20.11 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHH
Q ss_conf 8989994798128999999999
Q 000607 36 QNTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~ 57 (1396)
++++++.|.|+|||+.+-.++.
T Consensus 39 ~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHH
T ss_conf 6468766998883089999998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.99 E-value=0.58 Score=19.46 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 860898999479812899999999999999469999489999288531
Q 000607 33 ALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 33 al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~L 80 (1396)
...++++|..+||+|||.....++..+.. .+..++++=|.-.+
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~-----~g~~~iiiD~kge~ 90 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTGLL-----RGDRMVIVDPNGDM 90 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHH-----TTCEEEEEEETTHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCHHH
T ss_conf 35265899907999689999999999984-----79988999687169
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.73 E-value=0.59 Score=19.38 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
.++++.|+|+|||.+|-.+..+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.60 E-value=0.29 Score=21.39 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=17.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHH
Q ss_conf 8989994798128999999999
Q 000607 36 QNTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~ 57 (1396)
+|++...|||+|||.+|=.+.+
T Consensus 69 ~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 5324418998637899999986
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.93 E-value=0.43 Score=20.28 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHC-C---CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999999999860-8---98999479812899999999999
Q 000607 24 NYQLEALENALK-Q---NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~e~al~-~---n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+-..+.+..+++ + +++++.|.|+|||.+|-.+++++
T Consensus 30 ~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 30 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999985999769997899974879999999998
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=84.85 E-value=0.43 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHHHHCC-C--EEEEECCCCHHHHHHH
Q ss_conf 99998608-9--8999479812899999
Q 000607 29 ALENALKQ-N--TIVFLETGSGKTLIAI 53 (1396)
Q Consensus 29 ~~e~al~~-n--~Ii~~~TGsGKT~iai 53 (1396)
+++.+++| | ++.+..||||||++..
T Consensus 105 lv~~~l~G~n~tifaYGqTGSGKTyTm~ 132 (362)
T d1v8ka_ 105 LVQTIFEGGKATCFAYGQTGSGKTHTMG 132 (362)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf 9999874168138863257888860333
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.73 E-value=0.66 Score=19.08 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99999998608----989994798128999999999999
Q 000607 26 QLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 26 Q~e~~e~al~~----n~Ii~~~TGsGKT~iailli~~l~ 60 (1396)
..+.+..+++. +.|++.|.|+|||.+|-.+++++.
T Consensus 23 ~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 23 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999999999869987499988999870546999999972
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.19 E-value=0.47 Score=20.05 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.5
Q ss_pred HHHHHHCC-C--EEEEECCCCHHHHHH
Q ss_conf 99998608-9--899947981289999
Q 000607 29 ALENALKQ-N--TIVFLETGSGKTLIA 52 (1396)
Q Consensus 29 ~~e~al~~-n--~Ii~~~TGsGKT~ia 52 (1396)
+++.+++| | ++.+.+||||||++.
T Consensus 67 lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 67 IVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCEEC
T ss_conf 999997699864231014688773312
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.13 E-value=0.7 Score=18.92 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=37.4
Q ss_pred HCCCEEEEECCCCHHHHHHHHHHHHHHHHHC-------CCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6089899947981289999999999999946-------999948999928853189999999871
Q 000607 34 LKQNTIVFLETGSGKTLIAIMLLRSYAYLLR-------KPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 34 l~~n~Ii~~~TGsGKT~iailli~~l~~~~~-------~~~~k~~liLvPt~~Lv~Q~~~~i~~~ 91 (1396)
++|.+||.++-|||||.+.+..+..+..... .-....++.|+=|+.-+....+.|...
T Consensus 15 ~~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~ 79 (485)
T d1w36b1 15 LQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (485)
T ss_dssp CSSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 99996899718448899999999999861754322347998252867641799999999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.41 E-value=0.32 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=18.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+++++.|+|+|||.+|-.+..++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988979988999999999986
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.23 E-value=0.76 Score=18.68 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHCC------CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 99998608------989994798128999999999999994699994899992885318999999987
Q 000607 29 ALENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 29 ~~e~al~~------n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~ 90 (1396)
.++.++.| -++++.++|+|||..+.-++..... .+..++++.-. .-..+..+....
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~-----~~~~~~~is~e-~~~~~~~~~~~~ 75 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-----NKERAILFAYE-ESRAQLLRNAYS 75 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-----TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-----HCCCCCEEECC-CCHHHHHHHHHH
T ss_conf 798845689869849999918999999999999999987-----23244112126-799999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.15 E-value=0.77 Score=18.66 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+++++.|+|+|||..|-.+..++
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.12 E-value=0.77 Score=18.65 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=26.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 898999479812899999999999999469999489999288
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt 77 (1396)
+++++..+.|+|||..+..++..+.. .+.+...+.++.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~----~~~~v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS----SGVPVDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH----TTCCCEEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----CCCEEEEEEECC
T ss_conf 69999889997199999999999997----799799998455
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=0.45 Score=20.18 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 0898999479812899999999999
Q 000607 35 KQNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 35 ~~n~Ii~~~TGsGKT~iailli~~l 59 (1396)
++++++..+.|+|||.+|-.+..++
T Consensus 2 ~k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9749998999999999999999996
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=82.54 E-value=0.81 Score=18.50 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=23.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 9994798128999999999999994699994899992
Q 000607 39 IVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 39 Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLv 75 (1396)
|..-.||.|||.+++.+...+.+ .|++++++=
T Consensus 6 i~gt~~GVGKTtvs~~La~aLa~-----~G~rVl~id 37 (224)
T d1byia_ 6 VTGTDTEVGKTVASCALLQAAKA-----AGYRTAGYK 37 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH-----TTCCEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-----CCCEEEEEC
T ss_conf 99899994299999999999997-----799399988
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Probab=82.53 E-value=0.6 Score=19.34 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=18.5
Q ss_pred HHHHHHHCC-C--EEEEECCCCHHHHHH
Q ss_conf 999998608-9--899947981289999
Q 000607 28 EALENALKQ-N--TIVFLETGSGKTLIA 52 (1396)
Q Consensus 28 e~~e~al~~-n--~Ii~~~TGsGKT~ia 52 (1396)
.+++.+++| | ++.+..||||||++.
T Consensus 70 plv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 70 PTVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCEEE
T ss_conf 9999765247603872146787763243
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=82.01 E-value=0.62 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 898999479812899999999999
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 36 ~n~Ii~~~TGsGKT~iailli~~l 59 (1396)
-++++..+.|||||.+|-.+...+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=81.59 E-value=0.5 Score=19.87 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred HHHHHHCC-C--EEEEECCCCHHHHHH
Q ss_conf 99998608-9--899947981289999
Q 000607 29 ALENALKQ-N--TIVFLETGSGKTLIA 52 (1396)
Q Consensus 29 ~~e~al~~-n--~Ii~~~TGsGKT~ia 52 (1396)
+++.+++| | ++.+..||||||++.
T Consensus 66 lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 66 LVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf 999996698503552234787762016
|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif1a [TaxId: 10090]
Probab=81.55 E-value=0.69 Score=18.97 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHHHHHCC-C--EEEEECCCCHHHHHH
Q ss_conf 99998608-9--899947981289999
Q 000607 29 ALENALKQ-N--TIVFLETGSGKTLIA 52 (1396)
Q Consensus 29 ~~e~al~~-n--~Ii~~~TGsGKT~ia 52 (1396)
+++.+++| | ++.+..||||||++.
T Consensus 78 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 78 MLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf 999987335710563025788774162
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.54 E-value=0.88 Score=18.27 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9999999998608----98999479812899999999999
Q 000607 24 NYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~e~al~~----n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+-..+.+..+++. +++++.|+|+|||..+-++++++
T Consensus 20 ~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 20 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999976999859998899877558999999985
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.48 E-value=0.88 Score=18.26 Aligned_cols=82 Identities=9% Similarity=-0.013 Sum_probs=43.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 89994798128999999999999994699994899992885318999999987169708899589886567801058740
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.++..|+.||||.-.+..+..+ . ..+++++++-|...-... .. ...-.+.
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~---~--~~g~~v~~ikp~~D~R~~--~~--------~~~~~~~--------------- 54 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRF---Q--IAQYKCLVIKYAKDTRYS--SS--------FCTHDRN--------------- 54 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---H--TTTCCEEEEEETTCCC------------------------------------
T ss_pred EEEEECCCCHHHHHHHHHHHHH---H--HCCCCEEEEECCCCCCCC--CE--------EEECCCC---------------
T ss_conf 9999141678999999999999---9--869909999324023776--45--------6504788---------------
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 159199956999999573017543653599993431013
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~ 156 (1396)
....+.+......... +.+.+.|.+||||-+.
T Consensus 55 ~~~~~~~~~~~~~~~~-------~~~~d~I~IDEaQFf~ 86 (133)
T d1xbta1 55 TMEALPACLLRDVAQE-------ALGVAVIGIDEGQFFP 86 (133)
T ss_dssp ---CEEESSGGGGHHH-------HHTCSEEEESSGGGCT
T ss_pred CCEEEEEECHHHHHHH-------HCCCCEEEEEHHHHHH
T ss_conf 4000566311566655-------2355368730667777
|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]
Probab=81.28 E-value=0.61 Score=19.29 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=18.5
Q ss_pred HHHHHHCC-C--EEEEECCCCHHHHHH
Q ss_conf 99998608-9--899947981289999
Q 000607 29 ALENALKQ-N--TIVFLETGSGKTLIA 52 (1396)
Q Consensus 29 ~~e~al~~-n--~Ii~~~TGsGKT~ia 52 (1396)
+++.+++| | ++.+..||||||++.
T Consensus 72 lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 72 ILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHHHCCCCCEEEEEEECCCCCEEEE
T ss_conf 688885158723875430245532884
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.10 E-value=0.91 Score=18.17 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=36.9
Q ss_pred HHHHHHC-C-----C-EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 9999860-8-----9-899947981289999999999999946999948999928853189999999
Q 000607 29 ALENALK-Q-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 29 ~~e~al~-~-----n-~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i 88 (1396)
.++.++. + . +.++.+.|+|||.+++.++..... .+..++|+-.--.+...+++.+
T Consensus 47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-----~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-----TTCEEEEEESSCCCCHHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-----CCCEEEEEECCCCCCHHHHHHH
T ss_conf 8987556698666336999648874889999999998754-----8988999989766799999980
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.63 E-value=0.7 Score=18.91 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+.+.+.|||+|||..|-.+.+.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 89997787500699999998633
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.46 E-value=0.88 Score=18.25 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHCC-----C-EEEEECCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCC
Q ss_conf 999998608-----9-89994798128999999999999994-69999489999288531
Q 000607 28 EALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLL-RKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 28 e~~e~al~~-----n-~Ii~~~TGsGKT~iailli~~l~~~~-~~~~~k~~liLvPt~~L 80 (1396)
+.++.++.| . ++++.++|+|||..+.-++....... ....+..++++.-....
T Consensus 21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (251)
T d1szpa2 21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF 80 (251)
T ss_dssp HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHH
T ss_conf 789963179986996999983899988999999999863124312689639999402307
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.26 E-value=0.59 Score=19.39 Aligned_cols=13 Identities=0% Similarity=0.281 Sum_probs=4.8
Q ss_pred EEEECCCCCHHHH
Q ss_conf 9993799857789
Q 000607 470 VIMFDPSRTVCSF 482 (1396)
Q Consensus 470 VI~fD~p~s~~~y 482 (1396)
++.|+...+=.+|
T Consensus 128 i~aYGqtGSGKT~ 140 (368)
T d2ncda_ 128 IFAYGQTGSGKTY 140 (368)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCCCE
T ss_conf 7731157875606
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.22 E-value=0.97 Score=17.98 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 98999479812899999999999
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Ii~~~TGsGKT~iailli~~l 59 (1396)
+++++.|+|+|||..|-.+.+++
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 38988979987888999999984
|